AlfalfaGEDB | Msa0372920

M. sativa cultivar zhongmu-4 / Msa0372920

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008408 GO:0009987 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:1901360
PFAM: PF01612.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372920	XP_024634043.1	94.855	311	13	1	1	308	1	311	0.0	541

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372920	sp\|Q84LH3\|WEX_ARATH	47.163	282	128	6	26	292	9	284	4.10e-79	245

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372920	A0A396IWX4	94.855	311	13	1	1	308	1	311	0.0	541

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0372920	Msa0421470	0.946394	5.021807e-105	-8.615850e-47
Msa0372920	Msa0467450	0.845398	4.164007e-59	-8.615850e-47
Msa0372920	Msa0745640	0.872752	2.497783e-67	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372920	MtrunA17_Chr3g0121831	94.855	311	13	1	1	308	1	311	0.0	541
Msa0372920	MtrunA17_Chr7g0241401	39.860	143	82	4	135	275	84	224	2.12e-25	101
Msa0372920	MtrunA17_Chr7g0241341	35.862	145	90	3	137	280	45	187	3.29e-23	94.7
Msa0372920	MtrunA17_Chr7g0241411	36.986	146	88	4	137	280	80	223	1.06e-21	91.7
Msa0372920	MtrunA17_Chr4g0070431	34.731	167	100	6	118	280	38	199	2.55e-17	79.3
Msa0372920	MtrunA17_Chr7g0241391	33.846	130	82	3	154	280	81	209	2.26e-13	68.2
Msa0372920	MtrunA17_Chr1g0192551	33.133	166	88	8	137	291	375	528	2.74e-12	67.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0372920	AT4G13870.2	47.163	282	128	6	26	292	9	284	4.17e-80	245
Msa0372920	AT4G13870.1	47.163	282	125	7	26	292	9	281	1.11e-77	238
Msa0372920	AT4G13885.1	42.342	111	27	1	182	292	186	259	2.49e-19	86.3
Msa0372920	AT1G56310.2	32.727	165	91	6	137	290	381	536	1.62e-12	68.2
Msa0372920	AT1G56310.1	32.727	165	91	6	137	290	381	536	1.62e-12	68.2

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Find 82 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCCCAGCAAAATAAGAAT+GGG	0.463753	3_1:-71765247	Msa0372920:CDS
AAGGTCTTCCACACCTTTAA+TGG	0.256939	3_1:+71766811	None:intergenic
AAGGTTGGAGCGGGGATTGG+CGG	0.452888	3_1:-71766869	Msa0372920:CDS
AATAGAAACCTTCAAAACTG+AGG	0.653917	3_1:+71767002	None:intergenic
AATGGCTTCAAGATCTTCCT+GGG	0.547393	3_1:+71769131	None:intergenic
ACGGCGGCTGCTGCGGCGAG+GGG	0.394600	3_1:+71769035	None:intergenic
ACGTTTGGTAGTGATGGCGG+TGG	0.565650	3_1:+71769077	None:intergenic
ACTTCTACAGGTGTTCCACC+CGG	0.569270	3_1:-71767129	Msa0372920:intron
AGATTGAAGAGTGGCGTCAA+TGG	0.502315	3_1:+71769113	None:intergenic
AGCCCAGCAAAATAAGAATG+GGG	0.678211	3_1:-71765246	Msa0372920:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTCCAATTAAGCCAGTAAAA+CGG	+	chr3_1:71764958-71764977	None:intergenic	30.0%
GTAATAGAGTCAATACAACT+AGG	+	chr3_1:71765396-71765415	None:intergenic	30.0%
TTTGGCATTTGTATCTGTTT+GGG	-	chr3_1:71765522-71765541	Msa0372920:intron	30.0%
TGAAAAGATAAGAACATAGG+TGG	+	chr3_1:71765785-71765804	None:intergenic	30.0%
TGCTGAAAAGATAAGAACAT+AGG	+	chr3_1:71765788-71765807	None:intergenic	30.0%
CAAGTGGAAGAAATAACATT+GGG	-	chr3_1:71765901-71765920	Msa0372920:intron	30.0%
GGGAACTAAAAAGTTGTATT+GGG	-	chr3_1:71765982-71766001	Msa0372920:intron	30.0%
GGAACTAAAAAGTTGTATTG+GGG	-	chr3_1:71765983-71766002	Msa0372920:intron	30.0%
GAACTAAAAAGTTGTATTGG+GGG	-	chr3_1:71765984-71766003	Msa0372920:intron	30.0%
GTATTGTATGAAACTTCTAC+AGG	-	chr3_1:71766314-71766333	Msa0372920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	71764228	71769249	71764228	ID=Msa0372920;Name=Msa0372920
chr3_1	mRNA	71764228	71769249	71764228	ID=Msa0372920-mRNA-1;Parent=Msa0372920;Name=Msa0372920-mRNA-1;_AED=0.05;_eAED=0.05;_QI=11\|1\|1\|1\|1\|1\|6\|182\|308
chr3_1	exon	71764228	71764484	71764228	ID=Msa0372920-mRNA-1:exon:15805;Parent=Msa0372920-mRNA-1
chr3_1	exon	71765165	71765275	71765165	ID=Msa0372920-mRNA-1:exon:15804;Parent=Msa0372920-mRNA-1
chr3_1	exon	71766727	71766888	71766727	ID=Msa0372920-mRNA-1:exon:15803;Parent=Msa0372920-mRNA-1
chr3_1	exon	71767011	71767141	71767011	ID=Msa0372920-mRNA-1:exon:15802;Parent=Msa0372920-mRNA-1
chr3_1	exon	71768136	71768315	71768136	ID=Msa0372920-mRNA-1:exon:15801;Parent=Msa0372920-mRNA-1
chr3_1	exon	71768971	71769249	71768971	ID=Msa0372920-mRNA-1:exon:15800;Parent=Msa0372920-mRNA-1
chr3_1	five_prime_UTR	71769239	71769249	71769239	ID=Msa0372920-mRNA-1:five_prime_utr;Parent=Msa0372920-mRNA-1
chr3_1	CDS	71768971	71769238	71768971	ID=Msa0372920-mRNA-1:cds;Parent=Msa0372920-mRNA-1
chr3_1	CDS	71768136	71768315	71768136	ID=Msa0372920-mRNA-1:cds;Parent=Msa0372920-mRNA-1
chr3_1	CDS	71767011	71767141	71767011	ID=Msa0372920-mRNA-1:cds;Parent=Msa0372920-mRNA-1
chr3_1	CDS	71766727	71766888	71766727	ID=Msa0372920-mRNA-1:cds;Parent=Msa0372920-mRNA-1
chr3_1	CDS	71765165	71765275	71765165	ID=Msa0372920-mRNA-1:cds;Parent=Msa0372920-mRNA-1
chr3_1	CDS	71764410	71764484	71764410	ID=Msa0372920-mRNA-1:cds;Parent=Msa0372920-mRNA-1
chr3_1	three_prime_UTR	71764228	71764409	71764228	ID=Msa0372920-mRNA-1:three_prime_utr;Parent=Msa0372920-mRNA-1

Gene Sequence

>Msa0372920

ATGGATCGTTCAGGCGAAGGAAAAAGGGAGGAGGAGCTTGGTTTCGAGCGGCTCGCCTCATTCGTGTGCGAATGCGAGCCTTTATCCCAGGAAGATCTTGAAGCCATTGACGCCACTCTTCAATCTTCTCTCCCCAAACCCACCGCCATCACTACCAAACGTCCCTTCATCTCTCACTCTCCCCCTCGCCGCAGCAGCCGCCGTCGCTTACCCACATCGCTCATCGCTCTTCAACTCCCACCTTCTCTCTCTTTCTCACCTTCTCCAGGCCATTTAAAGATGAGGTTACCTGTAATGAAGTTTTGTGGGAAAATTATGTACAGCAGGACATTTAATGATGTGGAGAAAGCTGTAACAAAGTTCCTAAAAAGCATTGAAGAAAAGAAAAGAGAGATGATGCAAATTCCAATCGGATTTGACATTGAGTGGAGACCCACCTTCAAAAGAGGTGTTCCACCCGGGAAAACAGCAGTGATGCAGATATGTTGTGACACTAATCATTGTCTTGTTCTTCATCTAATTCATTCTGGAATCCCTCGAAATCTACAGCTTTTACTTGAAGATTCCTCAGTTTTGAAGGTTGGAGCGGGGATTGGCGGTGATGCTTCTAAGGTTTTGAGAGATTATTTCATATCCATTAAAGGTGTGGAAGACCTTTCTTATCACGCTAATCAAAAGCTAGGTGGAGGTCCGAATAAGTGGGGTCTTGCATCTTTGACTGAAAAACTTCTATCAAAACAGCTTAAGAAGCCCAGCAAAATAAGAATGGGGAATTGGGAGACTCCTTATTTGTCAAAGGAGCAACTAGAGTATGCTGCCACAGATGCTTTTGCTTCTTGGTTTCTCTATCAGACTATTAAAGATCTCCCAGATGCCCAGGAAGTTGCCGACAAAAGTAGTGAAGTTGATGGTGCACCGCAACAATGA

Protein sequence

>Msa0372920

MDRSGEGKREEELGFERLASFVCECEPLSQEDLEAIDATLQSSLPKPTAITTKRPFISHSPPRRSSRRRLPTSLIALQLPPSLSFSPSPGHLKMRLPVMKFCGKIMYSRTFNDVEKAVTKFLKSIEEKKREMMQIPIGFDIEWRPTFKRGVPPGKTAVMQICCDTNHCLVLHLIHSGIPRNLQLLLEDSSVLKVGAGIGGDASKVLRDYFISIKGVEDLSYHANQKLGGGPNKWGLASLTEKLLSKQLKKPSKIRMGNWETPYLSKEQLEYAATDAFASWFLYQTIKDLPDAQEVADKSSEVDGAPQQ*