Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421470 | XP_024634043.1 | 94.855 | 311 | 13 | 1 | 1 | 308 | 1 | 311 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421470 | sp|Q84LH3|WEX_ARATH | 47.163 | 282 | 128 | 6 | 26 | 292 | 9 | 284 | 4.10e-79 | 245 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421470 | A0A396IWX4 | 94.855 | 311 | 13 | 1 | 1 | 308 | 1 | 311 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0372920 | Msa0421470 | 0.946394 | 5.021807e-105 | -8.615850e-47 |
| Msa0421470 | Msa0467450 | 0.881549 | 2.188057e-70 | -8.615850e-47 |
| Msa0421470 | Msa0745640 | 0.909854 | 3.590333e-82 | -8.615850e-47 |
| Msa0421470 | Msa1266200 | 0.826794 | 2.230389e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421470 | MtrunA17_Chr3g0121831 | 94.855 | 311 | 13 | 1 | 1 | 308 | 1 | 311 | 0.0 | 541 |
| Msa0421470 | MtrunA17_Chr7g0241401 | 39.860 | 143 | 82 | 4 | 135 | 275 | 84 | 224 | 2.12e-25 | 101 |
| Msa0421470 | MtrunA17_Chr7g0241341 | 35.862 | 145 | 90 | 3 | 137 | 280 | 45 | 187 | 3.29e-23 | 94.7 |
| Msa0421470 | MtrunA17_Chr7g0241411 | 36.986 | 146 | 88 | 4 | 137 | 280 | 80 | 223 | 1.06e-21 | 91.7 |
| Msa0421470 | MtrunA17_Chr4g0070431 | 34.731 | 167 | 100 | 6 | 118 | 280 | 38 | 199 | 2.55e-17 | 79.3 |
| Msa0421470 | MtrunA17_Chr7g0241391 | 33.846 | 130 | 82 | 3 | 154 | 280 | 81 | 209 | 2.26e-13 | 68.2 |
| Msa0421470 | MtrunA17_Chr1g0192551 | 33.133 | 166 | 88 | 8 | 137 | 291 | 375 | 528 | 2.74e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421470 | AT4G13870.2 | 47.163 | 282 | 128 | 6 | 26 | 292 | 9 | 284 | 4.17e-80 | 245 |
| Msa0421470 | AT4G13870.1 | 47.163 | 282 | 125 | 7 | 26 | 292 | 9 | 281 | 1.11e-77 | 238 |
| Msa0421470 | AT4G13885.1 | 42.342 | 111 | 27 | 1 | 182 | 292 | 186 | 259 | 2.49e-19 | 86.3 |
| Msa0421470 | AT1G56310.2 | 32.727 | 165 | 91 | 6 | 137 | 290 | 381 | 536 | 1.62e-12 | 68.2 |
| Msa0421470 | AT1G56310.1 | 32.727 | 165 | 91 | 6 | 137 | 290 | 381 | 536 | 1.62e-12 | 68.2 |
Find 82 sgRNAs with CRISPR-Local
Find 387 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCTTGGTTTCTCTATC+AGG | 0.185259 | 3_2:+70412495 | Msa0421470:CDS |
| GTAGTGATGGCGGTGGGTTT+GGG | 0.208962 | 3_2:-70408848 | None:intergenic |
| GGTAGTGATGGCGGTGGGTT+TGG | 0.223276 | 3_2:-70408849 | None:intergenic |
| TCGGCAACTTCCTGGGCATC+TGG | 0.234563 | 3_2:-70413212 | None:intergenic |
| GATTATTTCATATCCATTAA+AGG | 0.237423 | 3_2:+70410844 | Msa0421470:CDS |
| AGTTGCTCCTTTGACAAATA+AGG | 0.254115 | 3_2:-70412448 | None:intergenic |
| AAGGTCTTCCACACCTTTAA+TGG | 0.256939 | 3_2:-70410857 | None:intergenic |
| GTTCTTCATCTAATTCATTC+TGG | 0.263565 | 3_2:+70410608 | Msa0421470:CDS |
| GATTGGCGGTGATGCTTCTA+AGG | 0.264433 | 3_2:+70410813 | Msa0421470:CDS |
| GCAAAATAAGAATGGGGAAT+TGG | 0.279134 | 3_2:+70412419 | Msa0421470:CDS |
| TTCCCACAAAACTTCATTAC+AGG | 0.290923 | 3_2:-70409396 | None:intergenic |
| CAGGTAACCTCATCTTTAAA+TGG | 0.311083 | 3_2:-70409377 | None:intergenic |
| ATCCAGTAGACTTGATTTCT+TGG | 0.335829 | 3_2:-70413384 | None:intergenic |
| CAAAATAAGAATGGGGAATT+GGG | 0.341744 | 3_2:+70412420 | Msa0421470:CDS |
| GACGGCGGCTGCTGCGGCGA+GGG | 0.351741 | 3_2:-70408898 | None:intergenic |
| TCAAGATCTTCCTGGGATAA+AGG | 0.355915 | 3_2:-70408794 | None:intergenic |
| ATCGTTCAGGCGAAGGAAAA+AGG | 0.359248 | 3_2:+70408720 | Msa0421470:CDS |
| CTCTCTTTCTCACCTTCTCC+AGG | 0.359477 | 3_2:+70408962 | Msa0421470:CDS |
| GATGCAAGACCCCACTTATT+CGG | 0.360319 | 3_2:-70410913 | None:intergenic |
| CAATGGCTTCAAGATCTTCC+TGG | 0.382197 | 3_2:-70408802 | None:intergenic |
| ACGGCGGCTGCTGCGGCGAG+GGG | 0.394600 | 3_2:-70408897 | None:intergenic |
| GTGAGAGATGAAGGGACGTT+TGG | 0.414413 | 3_2:-70408870 | None:intergenic |
| TCCAGTAGACTTGATTTCTT+GGG | 0.427807 | 3_2:-70413383 | None:intergenic |
| GATATTTACAAGGTTGGAGC+GGG | 0.430491 | 3_2:+70410790 | Msa0421470:intron |
| TACAAGGTTGGAGCGGGGAT+TGG | 0.439136 | 3_2:+70410796 | Msa0421470:intron |
| CAATCGGATTTGACATTGAG+TGG | 0.443247 | 3_2:+70409514 | Msa0421470:CDS |
| TCCCAAGAAATCAAGTCTAC+TGG | 0.444531 | 3_2:+70413382 | Msa0421470:three_prime_UTR |
| GGTGAGAAAGAGAGAGAAGG+TGG | 0.448106 | 3_2:-70408953 | None:intergenic |
| CGACGGCGGCTGCTGCGGCG+AGG | 0.448728 | 3_2:-70408899 | None:intergenic |
| AAGGTTGGAGCGGGGATTGG+CGG | 0.452888 | 3_2:+70410799 | Msa0421470:intron |
| CGGCGGCTGCTGCGGCGAGG+GGG | 0.457764 | 3_2:-70408896 | None:intergenic |
| AAGCCCAGCAAAATAAGAAT+GGG | 0.463753 | 3_2:+70412412 | Msa0421470:CDS |
| TAGTGATGGCGGTGGGTTTG+GGG | 0.478100 | 3_2:-70408847 | None:intergenic |
| GTGGGAAAATTATGTACAGC+AGG | 0.478430 | 3_2:+70409412 | Msa0421470:CDS |
| TTTGATTAGCGTGATAAGAA+AGG | 0.480610 | 3_2:-70410876 | None:intergenic |
| TAGGTGGAGGTCCGAATAAG+TGG | 0.494543 | 3_2:+70410902 | Msa0421470:CDS |
| CGGCAACTTCCTGGGCATCT+GGG | 0.500387 | 3_2:-70413211 | None:intergenic |
| AGATTGAAGAGTGGCGTCAA+TGG | 0.502315 | 3_2:-70408819 | None:intergenic |
| GAAGCCCAGCAAAATAAGAA+TGG | 0.502994 | 3_2:+70412411 | Msa0421470:CDS |
| CACTCAATGTCAAATCCGAT+TGG | 0.505854 | 3_2:-70409513 | None:intergenic |
| TTGATGGATCGTTCAGGCGA+AGG | 0.513572 | 3_2:+70408713 | Msa0421470:exon |
| GTAAGCGACGGCGGCTGCTG+CGG | 0.524183 | 3_2:-70408904 | None:intergenic |
| GGAGACTCCTTATTTGTCAA+AGG | 0.525820 | 3_2:+70412441 | Msa0421470:CDS |
| AGTAAAAGCTGTAGATTTCG+AGG | 0.526432 | 3_2:-70410635 | None:intergenic |
| TAAAGATCTCCCAGATGCCC+AGG | 0.529380 | 3_2:+70413202 | Msa0421470:CDS |
| GTGAGAAAGAGAGAGAAGGT+GGG | 0.530800 | 3_2:-70408952 | None:intergenic |
| CGTTTGGTAGTGATGGCGGT+GGG | 0.536538 | 3_2:-70408854 | None:intergenic |
| CTCGCATTCGCACACGAATG+AGG | 0.537585 | 3_2:-70408771 | None:intergenic |
| GGGGAGAGAAGATTGAAGAG+TGG | 0.538363 | 3_2:-70408828 | None:intergenic |
| GAGGAAGTGGGACCTGGAGA+AGG | 0.539535 | 3_2:-70408974 | None:intergenic |
| AATGGCTTCAAGATCTTCCT+GGG | 0.547393 | 3_2:-70408801 | None:intergenic |
| TGCAAGGCCATTTAAAGATG+AGG | 0.550092 | 3_2:+70409370 | Msa0421470:intron |
| TTTCATATCCATTAAAGGTG+TGG | 0.552455 | 3_2:+70410849 | Msa0421470:CDS |
| ACGTTTGGTAGTGATGGCGG+TGG | 0.565650 | 3_2:-70408855 | None:intergenic |
| GAGATGATGCAAATTCCAAT+CGG | 0.569168 | 3_2:+70409498 | Msa0421470:CDS |
| CAGCAGGACATTTAATGATG+TGG | 0.569177 | 3_2:+70409428 | Msa0421470:CDS |
| ACTTCTACAGGTGTTCCACC+CGG | 0.569270 | 3_2:+70410539 | Msa0421470:intron |
| GACAAAAGTAGTGAAGTTGA+TGG | 0.571140 | 3_2:+70413233 | Msa0421470:CDS |
| TGGAGACCCACCTTCAAAAG+AGG | 0.572553 | 3_2:+70409534 | Msa0421470:CDS |
| CGAATGCGAGCCTTTATCCC+AGG | 0.575805 | 3_2:+70408784 | Msa0421470:CDS |
| CCAAGAAGCAAAAGCATCTG+TGG | 0.579851 | 3_2:-70412482 | None:intergenic |
| TATCACGCTAATCAAAAGCT+AGG | 0.580739 | 3_2:+70410883 | Msa0421470:CDS |
| AGGAGGAGCTTGGTTTCGAG+CGG | 0.580987 | 3_2:+70408744 | Msa0421470:CDS |
| GAAGGGACGTTTGGTAGTGA+TGG | 0.582694 | 3_2:-70408861 | None:intergenic |
| CACTACACAGACATGAGATA+CGG | 0.589449 | 3_2:-70413272 | None:intergenic |
| GAAGGTGAGAAAGAGAGAGA+AGG | 0.591518 | 3_2:-70408956 | None:intergenic |
| GTAAAAGCTGTAGATTTCGA+GGG | 0.592056 | 3_2:-70410634 | None:intergenic |
| TGAAGAGCGATGAGCGATGT+GGG | 0.592673 | 3_2:-70408926 | None:intergenic |
| AGGTGGAGGTCCGAATAAGT+GGG | 0.596759 | 3_2:+70410903 | Msa0421470:CDS |
| ATGAGATACGGTCATTGTTG+CGG | 0.601141 | 3_2:-70413260 | None:intergenic |
| GCTAATCAAAAGCTAGGTGG+AGG | 0.615154 | 3_2:+70410889 | Msa0421470:CDS |
| CTTCTACAGGTGTTCCACCC+GGG | 0.615423 | 3_2:+70410540 | Msa0421470:intron |
| TTGAAGAGCGATGAGCGATG+TGG | 0.628089 | 3_2:-70408927 | None:intergenic |
| TGAGCGATGTGGGTAAGCGA+CGG | 0.634153 | 3_2:-70408916 | None:intergenic |
| GGGACGTTTGGTAGTGATGG+CGG | 0.643409 | 3_2:-70408858 | None:intergenic |
| TGATATTTACAAGGTTGGAG+CGG | 0.649599 | 3_2:+70410789 | Msa0421470:intron |
| CACGCTAATCAAAAGCTAGG+TGG | 0.649833 | 3_2:+70410886 | Msa0421470:CDS |
| AATAGAAACCTTCAAAACTG+AGG | 0.653917 | 3_2:-70410666 | None:intergenic |
| ATATTTACAAGGTTGGAGCG+GGG | 0.669237 | 3_2:+70410791 | Msa0421470:intron |
| AGCCCAGCAAAATAAGAATG+GGG | 0.678211 | 3_2:+70412413 | Msa0421470:CDS |
| GCGATGTGGGTAAGCGACGG+CGG | 0.679689 | 3_2:-70408913 | None:intergenic |
| GGTGGAGGTCCGAATAAGTG+GGG | 0.701955 | 3_2:+70410904 | Msa0421470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATATTATTATGAC+AGG | + | chr3_2:70411270-70411289 | Msa0421470:intron | 10.0% |
| !!! | ATTTTTATATTATTATGACA+GGG | + | chr3_2:70411271-70411290 | Msa0421470:intron | 10.0% |
| !! | ATCAATTAAATTAAAAATAC+CGG | - | chr3_2:70413429-70413448 | None:intergenic | 10.0% |
| !!! | TATTAAAGTATTGTAGTTTT+AGG | - | chr3_2:70410442-70410461 | None:intergenic | 15.0% |
| !! | ATATTACTTATTATAATTGC+AGG | - | chr3_2:70411473-70411492 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTAGACATCAT+CGG | + | chr3_2:70411680-70411699 | Msa0421470:intron | 15.0% |
| !! | AGATAACAATTAAAAGATTT+AGG | + | chr3_2:70411811-70411830 | Msa0421470:intron | 15.0% |
| !! | GATAACAATTAAAAGATTTA+GGG | + | chr3_2:70411812-70411831 | Msa0421470:intron | 15.0% |
| !!! | TGAAAATTCTAAAACTTATT+TGG | + | chr3_2:70411881-70411900 | Msa0421470:intron | 15.0% |
| !! | ATTGATTGAATTTACTATTT+AGG | - | chr3_2:70413072-70413091 | None:intergenic | 15.0% |
| !! | AGTAAAGTAATCAATATAGT+GGG | - | chr3_2:70409008-70409027 | None:intergenic | 20.0% |
| !! | AAGTAAAGTAATCAATATAG+TGG | - | chr3_2:70409009-70409028 | None:intergenic | 20.0% |
| !!! | ATTTCATCAATATTTCCTTT+TGG | + | chr3_2:70409311-70409330 | Msa0421470:intron | 20.0% |
| !! | AAGTTTATTAGAAAACCAAA+AGG | - | chr3_2:70409329-70409348 | None:intergenic | 20.0% |
| !!! | AGAAAATTCGATGTTTTTAT+TGG | + | chr3_2:70409803-70409822 | Msa0421470:intron | 20.0% |
| !!! | AAAAAAGTAATTTGAAGTTG+TGG | - | chr3_2:70410475-70410494 | None:intergenic | 20.0% |
| !! | TATGATGTTTGATATTTACA+AGG | + | chr3_2:70410780-70410799 | Msa0421470:intron | 20.0% |
| !! | GATTATTTCATATCCATTAA+AGG | + | chr3_2:70410844-70410863 | Msa0421470:CDS | 20.0% |
| !! | TTTAAAAAACAGAATCAAAC+AGG | - | chr3_2:70411838-70411857 | None:intergenic | 20.0% |
| !!! | ATGTTTTTAGTTTTGGAAAT+TGG | - | chr3_2:70412008-70412027 | None:intergenic | 20.0% |
| !! | AATTTCCAAAACTAAAAACA+TGG | + | chr3_2:70412007-70412026 | Msa0421470:intron | 20.0% |
| !!! | ATGTGGTATATTTTCATTAA+TGG | + | chr3_2:70412032-70412051 | Msa0421470:intron | 20.0% |
| !!! | TTTTAAATGTGTTGTATCTT+AGG | - | chr3_2:70412954-70412973 | None:intergenic | 20.0% |
| ! | TAAAGTAATCAATATAGTGG+GGG | - | chr3_2:70409006-70409025 | None:intergenic | 25.0% |
| ! | GTAAAGTAATCAATATAGTG+GGG | - | chr3_2:70409007-70409026 | None:intergenic | 25.0% |
| ! | ATCTCAGTGTTAACTTATAT+TGG | + | chr3_2:70409098-70409117 | Msa0421470:intron | 25.0% |
| !!! | TATTGTTTTACTGGCTTAAT+TGG | + | chr3_2:70409171-70409190 | Msa0421470:intron | 25.0% |
| !! | AATCTCATAATGGTTCTATT+TGG | + | chr3_2:70409232-70409251 | Msa0421470:intron | 25.0% |
| !! | TATTTTGTAGAGAAAGAGAT+AGG | - | chr3_2:70409278-70409297 | None:intergenic | 25.0% |
| !!! | ATGTCTTTTTTATTGTTGCA+AGG | + | chr3_2:70409354-70409373 | Msa0421470:intron | 25.0% |
| !!! | TCTTTTCTTCAATGCTTTTT+AGG | - | chr3_2:70409473-70409492 | None:intergenic | 25.0% |
| !! | TTGCCAATATTGTTACTTAA+AGG | - | chr3_2:70409641-70409660 | None:intergenic | 25.0% |
| ! | TTTGGTATTTGTATCTGTTT+GGG | + | chr3_2:70409736-70409755 | Msa0421470:intron | 25.0% |
| !! | AAACATCGAATTTTCTTTAC+TGG | - | chr3_2:70409799-70409818 | None:intergenic | 25.0% |
| !! | TTTTCTTCTAGTCAATTGTT+TGG | + | chr3_2:70409906-70409925 | Msa0421470:intron | 25.0% |
| ! | GGTTTCTATTTACTTTAAAC+TGG | + | chr3_2:70410679-70410698 | Msa0421470:intron | 25.0% |
| ! | ATGTTTGATATTTACAAGGT+TGG | + | chr3_2:70410784-70410803 | Msa0421470:intron | 25.0% |
| !!! | CTGTTTTGATAGAAGTTTTT+CGG | - | chr3_2:70410944-70410963 | None:intergenic | 25.0% |
| ! | TACCAGATATAACATAAGAA+TGG | - | chr3_2:70411138-70411157 | None:intergenic | 25.0% |
| ! | AAAATAAATTCTTCCCCAAA+AGG | - | chr3_2:70411256-70411275 | None:intergenic | 25.0% |
| ! | TAAACTATACATGTAATGTC+AGG | - | chr3_2:70411334-70411353 | None:intergenic | 25.0% |
| !!! | ACTAGCACATTTTTTTAAAG+CGG | - | chr3_2:70411406-70411425 | None:intergenic | 25.0% |
| !! | GCAAAACATAAAACAGTTTT+GGG | - | chr3_2:70411931-70411950 | None:intergenic | 25.0% |
| !! | AGCAAAACATAAAACAGTTT+TGG | - | chr3_2:70411932-70411951 | None:intergenic | 25.0% |
| !!! | CATTTCCATGTTTTTAGTTT+TGG | - | chr3_2:70412015-70412034 | None:intergenic | 25.0% |
| ! | AAACTAAAAACATGGAAATG+TGG | + | chr3_2:70412015-70412034 | Msa0421470:intron | 25.0% |
| !!! | ATGGCATTTTAGTAAATAAG+TGG | + | chr3_2:70412051-70412070 | Msa0421470:intron | 25.0% |
| ! | AAGAAATAAGATTATCAAGC+AGG | + | chr3_2:70412103-70412122 | Msa0421470:intron | 25.0% |
| ! | AAATAAAAAACGGTGGAAAA+TGG | - | chr3_2:70412268-70412287 | None:intergenic | 25.0% |
| ! | AGGCCAAAGAAAATAAAAAA+CGG | - | chr3_2:70412278-70412297 | None:intergenic | 25.0% |
| ! | TAAAAGTTAATCTAGTTGCA+GGG | + | chr3_2:70412628-70412647 | Msa0421470:intron | 25.0% |
| ! | TAGAAACTTAAGTATGAGAT+AGG | + | chr3_2:70412658-70412677 | Msa0421470:intron | 25.0% |
| !!! | GTGCTTTGTTATTGTTTTAC+TGG | + | chr3_2:70409162-70409181 | Msa0421470:intron | 30.0% |
| !! | TGGAAACAGATGATTAGTTT+AGG | + | chr3_2:70409191-70409210 | Msa0421470:intron | 30.0% |
| ATAGAACCATTATGAGATTC+AGG | - | chr3_2:70409231-70409250 | None:intergenic | 30.0% | |
| AAAGAGATAGGATAAGTCTT+CGG | - | chr3_2:70409266-70409285 | None:intergenic | 30.0% | |
| ! | TTACCTGTAATGAAGTTTTG+TGG | + | chr3_2:70409393-70409412 | Msa0421470:CDS | 30.0% |
| !! | TACCTGTAATGAAGTTTTGT+GGG | + | chr3_2:70409394-70409413 | Msa0421470:CDS | 30.0% |
| GTAATAGAGTCAATACAACT+AGG | - | chr3_2:70409610-70409629 | None:intergenic | 30.0% | |
| ! | CCAATATTGTTACTTAAAGG+CGG | - | chr3_2:70409638-70409657 | None:intergenic | 30.0% |
| !!! | TTGATCAACTAGTTTTGGTT+TGG | + | chr3_2:70409718-70409737 | Msa0421470:intron | 30.0% |
| GTTTGGTATTTGTATCTGTT+TGG | + | chr3_2:70409735-70409754 | Msa0421470:intron | 30.0% | |
| TGAAAAGATAAGAACATAGG+TGG | - | chr3_2:70409998-70410017 | None:intergenic | 30.0% | |
| TGCTGAAAAGATAAGAACAT+AGG | - | chr3_2:70410001-70410020 | None:intergenic | 30.0% | |
| !!! | GAAAGTTTTGGAAAAAAGGA+AGG | + | chr3_2:70410089-70410108 | Msa0421470:intron | 30.0% |
| CAAGTGGAAGAAATAACATT+GGG | + | chr3_2:70410114-70410133 | Msa0421470:intron | 30.0% | |
| GGGAACTAAAAAGTTGTATT+GGG | + | chr3_2:70410195-70410214 | Msa0421470:intron | 30.0% | |
| GGAACTAAAAAGTTGTATTG+GGG | + | chr3_2:70410196-70410215 | Msa0421470:intron | 30.0% | |
| GAACTAAAAAGTTGTATTGG+GGG | + | chr3_2:70410197-70410216 | Msa0421470:intron | 30.0% | |
| !!! | TGTAGTTTTAGGCTTTGTTT+GGG | - | chr3_2:70410431-70410450 | None:intergenic | 30.0% |
| !!! | TTGTAGTTTTAGGCTTTGTT+TGG | - | chr3_2:70410432-70410451 | None:intergenic | 30.0% |
| GTATTGTATGAAACTTCTAC+AGG | + | chr3_2:70410527-70410546 | Msa0421470:intron | 30.0% | |
| GTTCTTCATCTAATTCATTC+TGG | + | chr3_2:70410608-70410627 | Msa0421470:CDS | 30.0% | |
| AATAGAAACCTTCAAAACTG+AGG | - | chr3_2:70410669-70410688 | None:intergenic | 30.0% | |
| ! | TTGTTTTCCTTTCTATCTGT+AGG | + | chr3_2:70410718-70410737 | Msa0421470:intron | 30.0% |
| ATTAGTTCCTACAGATAGAA+AGG | - | chr3_2:70410728-70410747 | None:intergenic | 30.0% | |
| TTTCATATCCATTAAAGGTG+TGG | + | chr3_2:70410849-70410868 | Msa0421470:CDS | 30.0% | |
| TTTGATTAGCGTGATAAGAA+AGG | - | chr3_2:70410879-70410898 | None:intergenic | 30.0% | |
| CGAAAAACTTCTATCAAAAC+AGG | + | chr3_2:70410942-70410961 | Msa0421470:CDS | 30.0% | |
| CATATTTCTTAAAAACCGAC+TGG | + | chr3_2:70410978-70410997 | Msa0421470:intron | 30.0% | |
| ! | ATCAGGTGTTTGAAGAATTT+TGG | - | chr3_2:70411030-70411049 | None:intergenic | 30.0% |
| AAAATTCTTCAAACACCTGA+TGG | + | chr3_2:70411029-70411048 | Msa0421470:intron | 30.0% | |
| CACCATTCTTATGTTATATC+TGG | + | chr3_2:70411133-70411152 | Msa0421470:intron | 30.0% | |
| ! | GTTTCCTTTGAAAGTTTCTT+CGG | + | chr3_2:70411158-70411177 | Msa0421470:intron | 30.0% |
| ! | TCAATGCTTTAACTACCTTT+TGG | + | chr3_2:70411238-70411257 | Msa0421470:intron | 30.0% |
| ! | CAATGCTTTAACTACCTTTT+GGG | + | chr3_2:70411239-70411258 | Msa0421470:intron | 30.0% |
| ! | AATGCTTTAACTACCTTTTG+GGG | + | chr3_2:70411240-70411259 | Msa0421470:intron | 30.0% |
| !!! | TTTTTTTAAAGCGGATAGAG+AGG | - | chr3_2:70411397-70411416 | None:intergenic | 30.0% |
| ATTTCCAATTACTGAGTAGT+AGG | + | chr3_2:70411508-70411527 | Msa0421470:intron | 30.0% | |
| TTTACCTACTACTCAGTAAT+TGG | - | chr3_2:70411515-70411534 | None:intergenic | 30.0% | |
| ! | ATGCTGATTAAGTTCTTCAA+AGG | + | chr3_2:70411636-70411655 | Msa0421470:intron | 30.0% |
| ! | TGCTGATTAAGTTCTTCAAA+GGG | + | chr3_2:70411637-70411656 | Msa0421470:intron | 30.0% |
| AACTGAAAACACAATCAAAC+AGG | + | chr3_2:70412195-70412214 | Msa0421470:intron | 30.0% | |
| GGAAAATGGATACTAAAGAA+AGG | - | chr3_2:70412254-70412273 | None:intergenic | 30.0% | |
| CCAAAGAAAATAAAAAACGG+TGG | - | chr3_2:70412275-70412294 | None:intergenic | 30.0% | |
| !!! | CCACCGTTTTTTATTTTCTT+TGG | + | chr3_2:70412272-70412291 | Msa0421470:intron | 30.0% |
| !!! | TTTTATTTTCTTTGGCCTTG+CGG | + | chr3_2:70412280-70412299 | Msa0421470:intron | 30.0% |
| GCTGCAAAAATAAATAAGCT+TGG | - | chr3_2:70412387-70412406 | None:intergenic | 30.0% | |
| CAAAATAAGAATGGGGAATT+GGG | + | chr3_2:70412420-70412439 | Msa0421470:CDS | 30.0% | |
| GGTAATAAGGAATTCTTTGA+TGG | + | chr3_2:70412516-70412535 | Msa0421470:intron | 30.0% | |
| TGTCATGATTTGATAGAGTT+TGG | + | chr3_2:70412564-70412583 | Msa0421470:intron | 30.0% | |
| CTAAAAGTTAATCTAGTTGC+AGG | + | chr3_2:70412627-70412646 | Msa0421470:intron | 30.0% | |
| AAAAGTTAATCTAGTTGCAG+GGG | + | chr3_2:70412629-70412648 | Msa0421470:intron | 30.0% | |
| GACAAATAGATTAAGAGAGT+TGG | - | chr3_2:70413022-70413041 | None:intergenic | 30.0% | |
| ! | TTTACTATTTAGGACTCGTA+CGG | - | chr3_2:70413062-70413081 | None:intergenic | 30.0% |
| ACAAGTTTGAAAACAAGATG+AGG | - | chr3_2:70413112-70413131 | None:intergenic | 30.0% | |
| ! | TCTGCAAAAGTATACAAGAA+CGG | - | chr3_2:70413178-70413197 | None:intergenic | 30.0% |
| !! | ATCAACTTCACTACTTTTGT+CGG | - | chr3_2:70413234-70413253 | None:intergenic | 30.0% |
| TAAAAATACCGGCCATAAAA+GGG | - | chr3_2:70413418-70413437 | None:intergenic | 30.0% | |
| TTAAAAATACCGGCCATAAA+AGG | - | chr3_2:70413419-70413438 | None:intergenic | 30.0% | |
| !! | AACATTTTGATGGATCGTTC+AGG | + | chr3_2:70408707-70408726 | Msa0421470:exon | 35.0% |
| ! | TAATCAATATAGTGGGGGAA+AGG | - | chr3_2:70409001-70409020 | None:intergenic | 35.0% |
| AGTTAACACTGAGATTCACT+AGG | - | chr3_2:70409093-70409112 | None:intergenic | 35.0% | |
| ! | TATGAGATTCAGGTTCTGTT+TGG | - | chr3_2:70409221-70409240 | None:intergenic | 35.0% |
| ACAGAACCTGAATCTCATAA+TGG | + | chr3_2:70409222-70409241 | Msa0421470:intron | 35.0% | |
| ! | CTCATAATGGTTCTATTTGG+TGG | + | chr3_2:70409235-70409254 | Msa0421470:intron | 35.0% |
| AAGAGATAGGATAAGTCTTC+GGG | - | chr3_2:70409265-70409284 | None:intergenic | 35.0% | |
| CAGGTAACCTCATCTTTAAA+TGG | - | chr3_2:70409380-70409399 | None:intergenic | 35.0% | |
| TTCCCACAAAACTTCATTAC+AGG | - | chr3_2:70409399-70409418 | None:intergenic | 35.0% | |
| GAGATGATGCAAATTCCAAT+CGG | + | chr3_2:70409498-70409517 | Msa0421470:CDS | 35.0% | |
| ! | TCTTGTTATGTTCAAGTAGC+TGG | + | chr3_2:70409568-70409587 | Msa0421470:intron | 35.0% |
| TATGTTCAAGTAGCTGGTTA+TGG | + | chr3_2:70409574-70409593 | Msa0421470:intron | 35.0% | |
| CCGCCTTTAAGTAACAATAT+TGG | + | chr3_2:70409635-70409654 | Msa0421470:intron | 35.0% | |
| !! | GGAAGTTGATCAACTAGTTT+TGG | + | chr3_2:70409713-70409732 | Msa0421470:intron | 35.0% |
| !! | TATCAACCTAGTTGTTTCTC+TGG | - | chr3_2:70409770-70409789 | None:intergenic | 35.0% |
| !! | AGAGAAACAACTAGGTTGAT+AGG | + | chr3_2:70409769-70409788 | Msa0421470:intron | 35.0% |
| ! | TTATTGGTTGAAGAACCTCA+AGG | + | chr3_2:70409819-70409838 | Msa0421470:intron | 35.0% |
| TATACTGCTATTCCCATGAA+AGG | - | chr3_2:70409855-70409874 | None:intergenic | 35.0% | |
| AGCACTTGTAAGTTGTAAGT+GGG | - | chr3_2:70409879-70409898 | None:intergenic | 35.0% | |
| AAGCACTTGTAAGTTGTAAG+TGG | - | chr3_2:70409880-70409899 | None:intergenic | 35.0% | |
| !! | CAATTGTTTGGCTCTTTACT+CGG | + | chr3_2:70409918-70409937 | Msa0421470:intron | 35.0% |
| AGTTGCAACAAAGCTATTAC+AGG | - | chr3_2:70409968-70409987 | None:intergenic | 35.0% | |
| ! | TTGTTCCTTTTGTGACTGTA+AGG | + | chr3_2:70410034-70410053 | Msa0421470:intron | 35.0% |
| !!! | TAAGGCTTTGTTTGCGATTT+TGG | + | chr3_2:70410052-70410071 | Msa0421470:intron | 35.0% |
| !!! | AGGGGAAAGTTTTGGAAAAA+AGG | + | chr3_2:70410085-70410104 | Msa0421470:intron | 35.0% |
| GCAAGTGGAAGAAATAACAT+TGG | + | chr3_2:70410113-70410132 | Msa0421470:intron | 35.0% | |
| TGGAAGAAATAACATTGGGA+GGG | + | chr3_2:70410118-70410137 | Msa0421470:intron | 35.0% | |
| ATACAAAACCCTCCTCATAT+AGG | + | chr3_2:70410173-70410192 | Msa0421470:intron | 35.0% | |
| TACAAAACCCTCCTCATATA+GGG | + | chr3_2:70410174-70410193 | Msa0421470:intron | 35.0% | |
| !!! | CTTTTTAGTTCCCCTATATG+AGG | - | chr3_2:70410188-70410207 | None:intergenic | 35.0% |
| GGGGAACTAAAAAGTTGTAT+TGG | + | chr3_2:70410194-70410213 | Msa0421470:intron | 35.0% | |
| TAAAAAGTTGTATTGGGGGA+GGG | + | chr3_2:70410201-70410220 | Msa0421470:intron | 35.0% | |
| GTGGAAAATATAGAGGGAAA+TGG | - | chr3_2:70410369-70410388 | None:intergenic | 35.0% | |
| GTAAAAGCTGTAGATTTCGA+GGG | - | chr3_2:70410637-70410656 | None:intergenic | 35.0% | |
| AGTAAAAGCTGTAGATTTCG+AGG | - | chr3_2:70410638-70410657 | None:intergenic | 35.0% | |
| !! | TGAAGATTCCTCAGTTTTGA+AGG | + | chr3_2:70410658-70410677 | Msa0421470:CDS | 35.0% |
| TGATATTTACAAGGTTGGAG+CGG | + | chr3_2:70410789-70410808 | Msa0421470:intron | 35.0% | |
| TATCACGCTAATCAAAAGCT+AGG | + | chr3_2:70410883-70410902 | Msa0421470:CDS | 35.0% | |
| AAAAGTTTCTTTGTGCCATC+AGG | - | chr3_2:70411047-70411066 | None:intergenic | 35.0% | |
| ! | TTTTTATGCCCTTCCAAAAC+TGG | + | chr3_2:70411064-70411083 | Msa0421470:intron | 35.0% |
| ATAACATAAGAATGGTGAGC+AGG | - | chr3_2:70411130-70411149 | None:intergenic | 35.0% | |
| ! | TTTTCCTTATCTCTGGATAC+AGG | - | chr3_2:70411184-70411203 | None:intergenic | 35.0% |
| GTATCCAGAGATAAGGAAAA+TGG | + | chr3_2:70411184-70411203 | Msa0421470:intron | 35.0% | |
| AACATTCCATTCGTTTAGTG+GGG | - | chr3_2:70411219-70411238 | None:intergenic | 35.0% | |
| GAACATTCCATTCGTTTAGT+GGG | - | chr3_2:70411220-70411239 | None:intergenic | 35.0% | |
| TGAACATTCCATTCGTTTAG+TGG | - | chr3_2:70411221-70411240 | None:intergenic | 35.0% | |
| ACTTAATCAGCATTGTGCAA+GGG | - | chr3_2:70411629-70411648 | None:intergenic | 35.0% | |
| AACTTAATCAGCATTGTGCA+AGG | - | chr3_2:70411630-70411649 | None:intergenic | 35.0% | |
| ATGACTAGTGGAGAAGAAAA+TGG | - | chr3_2:70411764-70411783 | None:intergenic | 35.0% | |
| ! | AGAACTGCTGAATAGTGTTT+TGG | + | chr3_2:70411972-70411991 | Msa0421470:intron | 35.0% |
| AAGCCCAGCAAAATAAGAAT+GGG | + | chr3_2:70412412-70412431 | Msa0421470:CDS | 35.0% | |
| !!! | TTCCCCATTCTTATTTTGCT+GGG | - | chr3_2:70412418-70412437 | None:intergenic | 35.0% |
| !!! | ATTCCCCATTCTTATTTTGC+TGG | - | chr3_2:70412419-70412438 | None:intergenic | 35.0% |
| GCAAAATAAGAATGGGGAAT+TGG | + | chr3_2:70412419-70412438 | Msa0421470:CDS | 35.0% | |
| AGTTGCTCCTTTGACAAATA+AGG | - | chr3_2:70412451-70412470 | None:intergenic | 35.0% | |
| GGTTTCTCTATCAGGTAATA+AGG | + | chr3_2:70412503-70412522 | Msa0421470:intron | 35.0% | |
| TTTGAGTGATTAAGAGATGG+AGG | - | chr3_2:70412895-70412914 | None:intergenic | 35.0% | |
| GTGTTTGAGTGATTAAGAGA+TGG | - | chr3_2:70412898-70412917 | None:intergenic | 35.0% | |
| TAACACACGATACTATACAG+TGG | + | chr3_2:70412924-70412943 | Msa0421470:intron | 35.0% | |
| TACGGGGACATGATAAAATA+AGG | - | chr3_2:70413044-70413063 | None:intergenic | 35.0% | |
| ! | TTACTATTTAGGACTCGTAC+GGG | - | chr3_2:70413061-70413080 | None:intergenic | 35.0% |
| GTTTGAAAACAAGATGAGGT+TGG | - | chr3_2:70413108-70413127 | None:intergenic | 35.0% | |
| TACAAGAACGGTTGTATTAC+TGG | - | chr3_2:70413166-70413185 | None:intergenic | 35.0% | |
| GACAAAAGTAGTGAAGTTGA+TGG | + | chr3_2:70413233-70413252 | Msa0421470:CDS | 35.0% | |
| TCCAGTAGACTTGATTTCTT+GGG | - | chr3_2:70413386-70413405 | None:intergenic | 35.0% | |
| ATCCAGTAGACTTGATTTCT+TGG | - | chr3_2:70413387-70413406 | None:intergenic | 35.0% | |
| TCAAGATCTTCCTGGGATAA+AGG | - | chr3_2:70408797-70408816 | None:intergenic | 40.0% | |
| AATGGCTTCAAGATCTTCCT+GGG | - | chr3_2:70408804-70408823 | None:intergenic | 40.0% | |
| ACTGGAAATCAACAGAATGC+AGG | - | chr3_2:70409065-70409084 | None:intergenic | 40.0% | |
| !! | TGCATTCTGTTGATTTCCAG+TGG | + | chr3_2:70409064-70409083 | Msa0421470:intron | 40.0% |
| TGCAAGGCCATTTAAAGATG+AGG | + | chr3_2:70409370-70409389 | Msa0421470:intron | 40.0% | |
| GTGGGAAAATTATGTACAGC+AGG | + | chr3_2:70409412-70409431 | Msa0421470:CDS | 40.0% | |
| CAGCAGGACATTTAATGATG+TGG | + | chr3_2:70409428-70409447 | Msa0421470:CDS | 40.0% | |
| CACTCAATGTCAAATCCGAT+TGG | - | chr3_2:70409516-70409535 | None:intergenic | 40.0% | |
| CAATCGGATTTGACATTGAG+TGG | + | chr3_2:70409514-70409533 | Msa0421470:CDS | 40.0% | |
| !! | AACCAACCTCTTTTGAAGGT+GGG | - | chr3_2:70409543-70409562 | None:intergenic | 40.0% |
| ! | ACCTTCAAAAGAGGTTGGTT+CGG | + | chr3_2:70409543-70409562 | Msa0421470:intron | 40.0% |
| TAGTATGCCTACAAGAGTGA+AGG | + | chr3_2:70409692-70409711 | Msa0421470:intron | 40.0% | |
| TCAACTTCCTTCACTCTTGT+AGG | - | chr3_2:70409702-70409721 | None:intergenic | 40.0% | |
| ! | TTTGTATCTGTTTGGGACCA+CGG | + | chr3_2:70409743-70409762 | Msa0421470:intron | 40.0% |
| ! | AAAGGACGTTTTCTTCCTTG+AGG | - | chr3_2:70409837-70409856 | None:intergenic | 40.0% |
| AGGAAGAAAACGTCCTTTCA+TGG | + | chr3_2:70409839-70409858 | Msa0421470:intron | 40.0% | |
| GGAAGAAAACGTCCTTTCAT+GGG | + | chr3_2:70409840-70409859 | Msa0421470:intron | 40.0% | |
| TTACTCGGTCACATAGCTTA+TGG | + | chr3_2:70409933-70409952 | Msa0421470:intron | 40.0% | |
| CAAAGCCTTACAGTCACAAA+AGG | - | chr3_2:70410042-70410061 | None:intergenic | 40.0% | |
| !!! | GCTTTGTTTGCGATTTTGGA+GGG | + | chr3_2:70410056-70410075 | Msa0421470:intron | 40.0% |
| !! | CTTTGTTTGCGATTTTGGAG+GGG | + | chr3_2:70410057-70410076 | Msa0421470:intron | 40.0% |
| GTGGAAGAAATAACATTGGG+AGG | + | chr3_2:70410117-70410136 | Msa0421470:intron | 40.0% | |
| GGAAGAAATAACATTGGGAG+GGG | + | chr3_2:70410119-70410138 | Msa0421470:intron | 40.0% | |
| ACAAAACCCTCCTCATATAG+GGG | + | chr3_2:70410175-70410194 | Msa0421470:intron | 40.0% | |
| TTAGTTCCCCTATATGAGGA+GGG | - | chr3_2:70410184-70410203 | None:intergenic | 40.0% | |
| ! | TTTAGTTCCCCTATATGAGG+AGG | - | chr3_2:70410185-70410204 | None:intergenic | 40.0% |
| CTAAAAAGTTGTATTGGGGG+AGG | + | chr3_2:70410200-70410219 | Msa0421470:intron | 40.0% | |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | - | chr3_2:70410424-70410443 | None:intergenic | 40.0% |
| GATATTTACAAGGTTGGAGC+GGG | + | chr3_2:70410790-70410809 | Msa0421470:intron | 40.0% | |
| ATATTTACAAGGTTGGAGCG+GGG | + | chr3_2:70410791-70410810 | Msa0421470:intron | 40.0% | |
| AAGGTCTTCCACACCTTTAA+TGG | - | chr3_2:70410860-70410879 | None:intergenic | 40.0% | |
| !!! | TTAACCAGCCAGTTTTGGAA+GGG | - | chr3_2:70411075-70411094 | None:intergenic | 40.0% |
| ! | TCATGTTAACCAGCCAGTTT+TGG | - | chr3_2:70411080-70411099 | None:intergenic | 40.0% |
| TAAGAATGGTGAGCAGGTTT+GGG | - | chr3_2:70411124-70411143 | None:intergenic | 40.0% | |
| ATAAGAATGGTGAGCAGGTT+TGG | - | chr3_2:70411125-70411144 | None:intergenic | 40.0% | |
| TTATGACAGGGAGTCTATGT+AGG | + | chr3_2:70411283-70411302 | Msa0421470:intron | 40.0% | |
| ATAGAGAGGTAGGTCATATG+TGG | - | chr3_2:70411383-70411402 | None:intergenic | 40.0% | |
| ! | TTTAAAGCGGATAGAGAGGT+AGG | - | chr3_2:70411393-70411412 | None:intergenic | 40.0% |
| GCAACAATACAGATGACTAG+TGG | - | chr3_2:70411776-70411795 | None:intergenic | 40.0% | |
| AAACAATCAAGCAGACGCAT+GGG | - | chr3_2:70412230-70412249 | None:intergenic | 40.0% | |
| AAAACAATCAAGCAGACGCA+TGG | - | chr3_2:70412231-70412250 | None:intergenic | 40.0% | |
| GAAGCCCAGCAAAATAAGAA+TGG | + | chr3_2:70412411-70412430 | Msa0421470:CDS | 40.0% | |
| AGCCCAGCAAAATAAGAATG+GGG | + | chr3_2:70412413-70412432 | Msa0421470:CDS | 40.0% | |
| ! | GGAGACTCCTTATTTGTCAA+AGG | + | chr3_2:70412441-70412460 | Msa0421470:CDS | 40.0% |
| TGCTTCTTGGTTTCTCTATC+AGG | + | chr3_2:70412495-70412514 | Msa0421470:CDS | 40.0% | |
| TTAATCTAGTTGCAGGGGAT+TGG | + | chr3_2:70412634-70412653 | Msa0421470:intron | 40.0% | |
| CATGGAGTGATGTACACTAA+TGG | - | chr3_2:70412786-70412805 | None:intergenic | 40.0% | |
| AGTGATTAAGAGATGGAGGA+TGG | - | chr3_2:70412891-70412910 | None:intergenic | 40.0% | |
| ! | TACTATTTAGGACTCGTACG+GGG | - | chr3_2:70413060-70413079 | None:intergenic | 40.0% |
| ATGAGATACGGTCATTGTTG+CGG | - | chr3_2:70413263-70413282 | None:intergenic | 40.0% | |
| CACTACACAGACATGAGATA+CGG | - | chr3_2:70413275-70413294 | None:intergenic | 40.0% | |
| TCCCAAGAAATCAAGTCTAC+TGG | + | chr3_2:70413382-70413401 | Msa0421470:three_prime_UTR | 40.0% | |
| ! | GGATGATTCAGTCCCTTTTA+TGG | + | chr3_2:70413403-70413422 | Msa0421470:three_prime_UTR | 40.0% |
| ATCGTTCAGGCGAAGGAAAA+AGG | + | chr3_2:70408720-70408739 | Msa0421470:CDS | 45.0% | |
| TCGTTCAGGCGAAGGAAAAA+GGG | + | chr3_2:70408721-70408740 | Msa0421470:CDS | 45.0% | |
| CAATGGCTTCAAGATCTTCC+TGG | - | chr3_2:70408805-70408824 | None:intergenic | 45.0% | |
| AGATTGAAGAGTGGCGTCAA+TGG | - | chr3_2:70408822-70408841 | None:intergenic | 45.0% | |
| GTGAGAAAGAGAGAGAAGGT+GGG | - | chr3_2:70408955-70408974 | None:intergenic | 45.0% | |
| GAAGGTGAGAAAGAGAGAGA+AGG | - | chr3_2:70408959-70408978 | None:intergenic | 45.0% | |
| ! | AATATAGTGGGGGAAAGGAG+AGG | - | chr3_2:70408996-70409015 | None:intergenic | 45.0% |
| TCAACAGAATGCAGGAACAG+TGG | - | chr3_2:70409057-70409076 | None:intergenic | 45.0% | |
| GAGATTCACTAGGAATCCAC+TGG | - | chr3_2:70409083-70409102 | None:intergenic | 45.0% | |
| !! | GAACCAACCTCTTTTGAAGG+TGG | - | chr3_2:70409544-70409563 | None:intergenic | 45.0% |
| ! | ACCGAACCAACCTCTTTTGA+AGG | - | chr3_2:70409547-70409566 | None:intergenic | 45.0% |
| !!! | GGCTTTGTTTGCGATTTTGG+AGG | + | chr3_2:70410055-70410074 | Msa0421470:intron | 45.0% |
| !! | TTTGCGATTTTGGAGGGGAA+GGG | + | chr3_2:70410062-70410081 | Msa0421470:intron | 45.0% |
| GGAAAAAAGGAAGGAGCAAG+TGG | + | chr3_2:70410098-70410117 | Msa0421470:intron | 45.0% | |
| AGAAATAACATTGGGAGGGG+AGG | + | chr3_2:70410122-70410141 | Msa0421470:intron | 45.0% | |
| GAAATAACATTGGGAGGGGA+GGG | + | chr3_2:70410123-70410142 | Msa0421470:intron | 45.0% | |
| TGGGGGGTGGAAAATATAGA+GGG | - | chr3_2:70410375-70410394 | None:intergenic | 45.0% | |
| TTGGGGGGTGGAAAATATAG+AGG | - | chr3_2:70410376-70410395 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr3_2:70410420-70410439 | None:intergenic | 45.0% |
| CACGCTAATCAAAAGCTAGG+TGG | + | chr3_2:70410886-70410905 | Msa0421470:CDS | 45.0% | |
| GCTAATCAAAAGCTAGGTGG+AGG | + | chr3_2:70410889-70410908 | Msa0421470:CDS | 45.0% | |
| GATGCAAGACCCCACTTATT+CGG | - | chr3_2:70410916-70410935 | None:intergenic | 45.0% | |
| AACCGACTGGATTGTGTACA+TGG | + | chr3_2:70410991-70411010 | Msa0421470:intron | 45.0% | |
| ACCGACTGGATTGTGTACAT+GGG | + | chr3_2:70410992-70411011 | Msa0421470:intron | 45.0% | |
| TCCCATGTACACAATCCAGT+CGG | - | chr3_2:70410996-70411015 | None:intergenic | 45.0% | |
| !!! | GTTAACCAGCCAGTTTTGGA+AGG | - | chr3_2:70411076-70411095 | None:intergenic | 45.0% |
| CAGGCCGAAGAAACTTTCAA+AGG | - | chr3_2:70411165-70411184 | None:intergenic | 45.0% | |
| ! | GCGTCCATTTTCCTTATCTC+TGG | - | chr3_2:70411191-70411210 | None:intergenic | 45.0% |
| ACAGGGAGTCTATGTAGGTT+TGG | + | chr3_2:70411288-70411307 | Msa0421470:intron | 45.0% | |
| GTCATATGTGGCATTAGAGC+TGG | - | chr3_2:70411371-70411390 | None:intergenic | 45.0% | |
| TTGTGCAAGGGACAAAACTC+TGG | - | chr3_2:70411617-70411636 | None:intergenic | 45.0% | |
| AGCAGACGCATGGGAATTAA+GGG | - | chr3_2:70412221-70412240 | None:intergenic | 45.0% | |
| AAGCAGACGCATGGGAATTA+AGG | - | chr3_2:70412222-70412241 | None:intergenic | 45.0% | |
| TCAAATTTGTCCTCTCCGCA+AGG | - | chr3_2:70412298-70412317 | None:intergenic | 45.0% | |
| TGCGGAGAGGACAAATTTGA+AGG | + | chr3_2:70412298-70412317 | Msa0421470:intron | 45.0% | |
| !! | CCAAGAAGCAAAAGCATCTG+TGG | - | chr3_2:70412485-70412504 | None:intergenic | 45.0% |
| ! | CCACAGATGCTTTTGCTTCT+TGG | + | chr3_2:70412482-70412501 | Msa0421470:CDS | 45.0% |
| GTACACTAATGGCAACAGAG+TGG | - | chr3_2:70412775-70412794 | None:intergenic | 45.0% | |
| !! | CGATGATGATGGAGAGTGTT+GGG | - | chr3_2:70412842-70412861 | None:intergenic | 45.0% |
| GATTAAGAGATGGAGGATGG+CGG | - | chr3_2:70412888-70412907 | None:intergenic | 45.0% | |
| ! | ACTTTTGTCGGCAACTTCCT+GGG | - | chr3_2:70413222-70413241 | None:intergenic | 45.0% |
| ! | TACTTTTGTCGGCAACTTCC+TGG | - | chr3_2:70413223-70413242 | None:intergenic | 45.0% |
| ! | GATTCAGTCCCTTTTATGGC+CGG | + | chr3_2:70413407-70413426 | Msa0421470:three_prime_UTR | 45.0% |
| ! | TTGATGGATCGTTCAGGCGA+AGG | + | chr3_2:70408713-70408732 | Msa0421470:exon | 50.0% |
| TTCAGGCGAAGGAAAAAGGG+AGG | + | chr3_2:70408724-70408743 | Msa0421470:CDS | 50.0% | |
| GGGGAGAGAAGATTGAAGAG+TGG | - | chr3_2:70408831-70408850 | None:intergenic | 50.0% | |
| !! | GAAGGGACGTTTGGTAGTGA+TGG | - | chr3_2:70408864-70408883 | None:intergenic | 50.0% |
| GTGAGAGATGAAGGGACGTT+TGG | - | chr3_2:70408873-70408892 | None:intergenic | 50.0% | |
| TGAAGAGCGATGAGCGATGT+GGG | - | chr3_2:70408929-70408948 | None:intergenic | 50.0% | |
| TTGAAGAGCGATGAGCGATG+TGG | - | chr3_2:70408930-70408949 | None:intergenic | 50.0% | |
| GGTGAGAAAGAGAGAGAAGG+TGG | - | chr3_2:70408956-70408975 | None:intergenic | 50.0% | |
| CTCTCTTTCTCACCTTCTCC+AGG | + | chr3_2:70408962-70408981 | Msa0421470:CDS | 50.0% | |
| CAGAATGCAGGAACAGTGGA+GGG | - | chr3_2:70409053-70409072 | None:intergenic | 50.0% | |
| ACAGAATGCAGGAACAGTGG+AGG | - | chr3_2:70409054-70409073 | None:intergenic | 50.0% | |
| TGGAGACCCACCTTCAAAAG+AGG | + | chr3_2:70409534-70409553 | Msa0421470:CDS | 50.0% | |
| GACCCACCTTCAAAAGAGGT+TGG | + | chr3_2:70409538-70409557 | Msa0421470:intron | 50.0% | |
| !! | CTAGTTGTTTCTCTGGTCCG+TGG | - | chr3_2:70409763-70409782 | None:intergenic | 50.0% |
| CACGGACCAGAGAAACAACT+AGG | + | chr3_2:70409761-70409780 | Msa0421470:intron | 50.0% | |
| !! | GTTTGCGATTTTGGAGGGGA+AGG | + | chr3_2:70410061-70410080 | Msa0421470:intron | 50.0% |
| ! | GTTGTATTGGGGGAGGGTTT+TGG | + | chr3_2:70410207-70410226 | Msa0421470:intron | 50.0% |
| !!! | TATTGGGGGAGGGTTTTGGA+GGG | + | chr3_2:70410211-70410230 | Msa0421470:intron | 50.0% |
| TTTGGGAGTTTGGAGGGAAG+GGG | - | chr3_2:70410414-70410433 | None:intergenic | 50.0% | |
| GTTTGGGAGTTTGGAGGGAA+GGG | - | chr3_2:70410415-70410434 | None:intergenic | 50.0% | |
| TGTTTGGGAGTTTGGAGGGA+AGG | - | chr3_2:70410416-70410435 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr3_2:70410421-70410440 | None:intergenic | 50.0% |
| ACTTCTACAGGTGTTCCACC+CGG | + | chr3_2:70410539-70410558 | Msa0421470:intron | 50.0% | |
| !!! | TGCATCACTGCTGTTTTCCC+GGG | - | chr3_2:70410560-70410579 | None:intergenic | 50.0% |
| !!! | CTGCATCACTGCTGTTTTCC+CGG | - | chr3_2:70410561-70410580 | None:intergenic | 50.0% |
| GATTGGCGGTGATGCTTCTA+AGG | + | chr3_2:70410813-70410832 | Msa0421470:CDS | 50.0% | |
| TAGGTGGAGGTCCGAATAAG+TGG | + | chr3_2:70410902-70410921 | Msa0421470:CDS | 50.0% | |
| AGGTGGAGGTCCGAATAAGT+GGG | + | chr3_2:70410903-70410922 | Msa0421470:CDS | 50.0% | |
| TATGCCCTTCCAAAACTGGC+TGG | + | chr3_2:70411068-70411087 | Msa0421470:intron | 50.0% | |
| ! | GCAGGTTTGGGACATTGAAG+TGG | - | chr3_2:70411112-70411131 | None:intergenic | 50.0% |
| TCGGCCTGTATCCAGAGATA+AGG | + | chr3_2:70411177-70411196 | Msa0421470:intron | 50.0% | |
| CTGTCTCCCCACTAAACGAA+TGG | + | chr3_2:70411210-70411229 | Msa0421470:intron | 50.0% | |
| !!! | TTTTCTTTGGCCTTGCGGAG+AGG | + | chr3_2:70412285-70412304 | Msa0421470:intron | 50.0% |
| !! | GTAGAGGGCATCAAGTGCAA+GGG | - | chr3_2:70412720-70412739 | None:intergenic | 50.0% |
| TGGGCAGCAGTAATGGTAGA+GGG | - | chr3_2:70412735-70412754 | None:intergenic | 50.0% | |
| ATGGGCAGCAGTAATGGTAG+AGG | - | chr3_2:70412736-70412755 | None:intergenic | 50.0% | |
| AGATGCATGGGCAGCAGTAA+TGG | - | chr3_2:70412742-70412761 | None:intergenic | 50.0% | |
| TAATGGCAACAGAGTGGCAG+TGG | - | chr3_2:70412769-70412788 | None:intergenic | 50.0% | |
| TGGTGAAAGGTGGTCAGTGA+CGG | - | chr3_2:70412813-70412832 | None:intergenic | 50.0% | |
| TGTTGGGTGGCAATGGTGAA+AGG | - | chr3_2:70412826-70412845 | None:intergenic | 50.0% | |
| !! | TGATGATGGAGAGTGTTGGG+TGG | - | chr3_2:70412839-70412858 | None:intergenic | 50.0% |
| !! | GCGATGATGATGGAGAGTGT+TGG | - | chr3_2:70412843-70412862 | None:intergenic | 50.0% |
| TAAAGATCTCCCAGATGCCC+AGG | + | chr3_2:70413202-70413221 | Msa0421470:CDS | 50.0% | |
| AGGCGAAGGAAAAAGGGAGG+AGG | + | chr3_2:70408727-70408746 | Msa0421470:CDS | 55.0% | |
| GGAAAAAGGGAGGAGGAGCT+TGG | + | chr3_2:70408734-70408753 | Msa0421470:CDS | 55.0% | |
| AGGAGGAGCTTGGTTTCGAG+CGG | + | chr3_2:70408744-70408763 | Msa0421470:CDS | 55.0% | |
| CTCGCATTCGCACACGAATG+AGG | - | chr3_2:70408774-70408793 | None:intergenic | 55.0% | |
| CGAATGCGAGCCTTTATCCC+AGG | + | chr3_2:70408784-70408803 | Msa0421470:CDS | 55.0% | |
| !! | TAGTGATGGCGGTGGGTTTG+GGG | - | chr3_2:70408850-70408869 | None:intergenic | 55.0% |
| !! | GTAGTGATGGCGGTGGGTTT+GGG | - | chr3_2:70408851-70408870 | None:intergenic | 55.0% |
| !! | CGTTTGGTAGTGATGGCGGT+GGG | - | chr3_2:70408857-70408876 | None:intergenic | 55.0% |
| !! | ACGTTTGGTAGTGATGGCGG+TGG | - | chr3_2:70408858-70408877 | None:intergenic | 55.0% |
| !! | GGGACGTTTGGTAGTGATGG+CGG | - | chr3_2:70408861-70408880 | None:intergenic | 55.0% |
| GGGGGAGAGTGAGAGATGAA+GGG | - | chr3_2:70408881-70408900 | None:intergenic | 55.0% | |
| AGGGGGAGAGTGAGAGATGA+AGG | - | chr3_2:70408882-70408901 | None:intergenic | 55.0% | |
| TGAGCGATGTGGGTAAGCGA+CGG | - | chr3_2:70408919-70408938 | None:intergenic | 55.0% | |
| AAAGGAGAGGAAGTGGGACC+TGG | - | chr3_2:70408983-70409002 | None:intergenic | 55.0% | |
| TGGGGGAAAGGAGAGGAAGT+GGG | - | chr3_2:70408989-70409008 | None:intergenic | 55.0% | |
| !! | CGATTTTGGAGGGGAAGGGA+GGG | + | chr3_2:70410066-70410085 | Msa0421470:intron | 55.0% |
| !! | GATTTTGGAGGGGAAGGGAG+GGG | + | chr3_2:70410067-70410086 | Msa0421470:intron | 55.0% |
| ! | GGGAAGGGAGGGGAAAGTTT+TGG | + | chr3_2:70410077-70410096 | Msa0421470:intron | 55.0% |
| !! | GTATTGGGGGAGGGTTTTGG+AGG | + | chr3_2:70410210-70410229 | Msa0421470:intron | 55.0% |
| !! | AAGGAAGGAAGGGCTTTGGG+GGG | - | chr3_2:70410391-70410410 | None:intergenic | 55.0% |
| ! | GAAGGAAGGAAGGGCTTTGG+GGG | - | chr3_2:70410392-70410411 | None:intergenic | 55.0% |
| GGAAGGAAGGAAGGGCTTTG+GGG | - | chr3_2:70410393-70410412 | None:intergenic | 55.0% | |
| GGGAAGGAAGGAAGGGCTTT+GGG | - | chr3_2:70410394-70410413 | None:intergenic | 55.0% | |
| AGGGAAGGGGAAGGAAGGAA+GGG | - | chr3_2:70410401-70410420 | None:intergenic | 55.0% | |
| TTTGGAGGGAAGGGGAAGGA+AGG | - | chr3_2:70410406-70410425 | None:intergenic | 55.0% | |
| CTTCTACAGGTGTTCCACCC+GGG | + | chr3_2:70410540-70410559 | Msa0421470:intron | 55.0% | |
| !!! | ATCACTGCTGTTTTCCCGGG+TGG | - | chr3_2:70410557-70410576 | None:intergenic | 55.0% |
| TACAAGGTTGGAGCGGGGAT+TGG | + | chr3_2:70410796-70410815 | Msa0421470:intron | 55.0% | |
| GGTGGAGGTCCGAATAAGTG+GGG | + | chr3_2:70410904-70410923 | Msa0421470:CDS | 55.0% | |
| AAGTGCAAGGGTGGAAGGCA+GGG | - | chr3_2:70412708-70412727 | None:intergenic | 55.0% | |
| GCATCAAGTGCAAGGGTGGA+AGG | - | chr3_2:70412713-70412732 | None:intergenic | 55.0% | |
| !! | GGTAGAGGGCATCAAGTGCA+AGG | - | chr3_2:70412721-70412740 | None:intergenic | 55.0% |
| ! | GGCAGTGGTGGAAGATGCAT+GGG | - | chr3_2:70412754-70412773 | None:intergenic | 55.0% |
| ! | TGGCAGTGGTGGAAGATGCA+TGG | - | chr3_2:70412755-70412774 | None:intergenic | 55.0% |
| TGGGTGGCAATGGTGAAAGG+TGG | - | chr3_2:70412823-70412842 | None:intergenic | 55.0% | |
| !! | TGGAGAGTGTTGGGTGGCAA+TGG | - | chr3_2:70412833-70412852 | None:intergenic | 55.0% |
| CAGGGTGACAGCGATGATGA+TGG | - | chr3_2:70412853-70412872 | None:intergenic | 55.0% | |
| ! | TGGAGGATGGCGGTGATGAA+GGG | - | chr3_2:70412878-70412897 | None:intergenic | 55.0% |
| ! | ATGGAGGATGGCGGTGATGA+AGG | - | chr3_2:70412879-70412898 | None:intergenic | 55.0% |
| !! | GGTAGTGATGGCGGTGGGTT+TGG | - | chr3_2:70408852-70408871 | None:intergenic | 60.0% |
| GAGGAAGTGGGACCTGGAGA+AGG | - | chr3_2:70408977-70408996 | None:intergenic | 60.0% | |
| GTGGGGGAAAGGAGAGGAAG+TGG | - | chr3_2:70408990-70409009 | None:intergenic | 60.0% | |
| !! | GCGATTTTGGAGGGGAAGGG+AGG | + | chr3_2:70410065-70410084 | Msa0421470:intron | 60.0% |
| ACATTGGGAGGGGAGGGCTT+TGG | + | chr3_2:70410129-70410148 | Msa0421470:intron | 60.0% | |
| CATTGGGAGGGGAGGGCTTT+GGG | + | chr3_2:70410130-70410149 | Msa0421470:intron | 60.0% | |
| ATTGGGAGGGGAGGGCTTTG+GGG | + | chr3_2:70410131-70410150 | Msa0421470:intron | 60.0% | |
| GGGGAAGGAAGGAAGGGCTT+TGG | - | chr3_2:70410395-70410414 | None:intergenic | 60.0% | |
| GAGGGAAGGGGAAGGAAGGA+AGG | - | chr3_2:70410402-70410421 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGAAGGGGA+AGG | - | chr3_2:70410410-70410429 | None:intergenic | 60.0% | |
| AAGGTTGGAGCGGGGATTGG+CGG | + | chr3_2:70410799-70410818 | Msa0421470:intron | 60.0% | |
| AAGGCAGGGAAGGGAGGAAG+AGG | - | chr3_2:70412694-70412713 | None:intergenic | 60.0% | |
| CAAGGGTGGAAGGCAGGGAA+GGG | - | chr3_2:70412703-70412722 | None:intergenic | 60.0% | |
| CAAGTGCAAGGGTGGAAGGC+AGG | - | chr3_2:70412709-70412728 | None:intergenic | 60.0% | |
| !! | GAGGGCATCAAGTGCAAGGG+TGG | - | chr3_2:70412717-70412736 | None:intergenic | 60.0% |
| TGGCAACAGAGTGGCAGTGG+TGG | - | chr3_2:70412766-70412785 | None:intergenic | 60.0% | |
| GTGGTCAGTGACGGCAGTCA+TGG | - | chr3_2:70412804-70412823 | None:intergenic | 60.0% | |
| ! | TGGCGGTGATGAAGGGTGCA+GGG | - | chr3_2:70412871-70412890 | None:intergenic | 60.0% |
| ! | ATGGCGGTGATGAAGGGTGC+AGG | - | chr3_2:70412872-70412891 | None:intergenic | 60.0% |
| CGGCAACTTCCTGGGCATCT+GGG | - | chr3_2:70413214-70413233 | None:intergenic | 60.0% | |
| TCGGCAACTTCCTGGGCATC+TGG | - | chr3_2:70413215-70413234 | None:intergenic | 60.0% | |
| GCGATGTGGGTAAGCGACGG+CGG | - | chr3_2:70408916-70408935 | None:intergenic | 65.0% | |
| ! | TTGGGAGGGGAGGGCTTTGG+GGG | + | chr3_2:70410132-70410151 | Msa0421470:intron | 65.0% |
| !! | GAAGGAAGGGCTTTGGGGGG+TGG | - | chr3_2:70410388-70410407 | None:intergenic | 65.0% |
| GCAAGGGTGGAAGGCAGGGA+AGG | - | chr3_2:70412704-70412723 | None:intergenic | 65.0% | |
| GTAAGCGACGGCGGCTGCTG+CGG | - | chr3_2:70408907-70408926 | None:intergenic | 70.0% | |
| !! | TGGGAGGGGAGGGCTTTGGG+GGG | + | chr3_2:70410133-70410152 | Msa0421470:intron | 70.0% |
| GGGTGGAAGGCAGGGAAGGG+AGG | - | chr3_2:70412700-70412719 | None:intergenic | 70.0% | |
| !! | GGGAGGGGAGGGCTTTGGGG+GGG | + | chr3_2:70410134-70410153 | Msa0421470:intron | 75.0% |
| ! | ACGGCGGCTGCTGCGGCGAG+GGG | - | chr3_2:70408900-70408919 | None:intergenic | 80.0% |
| ! | GACGGCGGCTGCTGCGGCGA+GGG | - | chr3_2:70408901-70408920 | None:intergenic | 80.0% |
| ! | CGGCGGCTGCTGCGGCGAGG+GGG | - | chr3_2:70408899-70408918 | None:intergenic | 85.0% |
| ! | CGACGGCGGCTGCTGCGGCG+AGG | - | chr3_2:70408902-70408921 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 70408705 | 70413453 | 70408705 | ID=Msa0421470;Name=Msa0421470 |
| chr3_2 | mRNA | 70408705 | 70413453 | 70408705 | ID=Msa0421470-mRNA-1;Parent=Msa0421470;Name=Msa0421470-mRNA-1;_AED=0.05;_eAED=0.05;_QI=11|1|1|1|1|1|6|182|308 |
| chr3_2 | exon | 70408705 | 70408983 | 70408705 | ID=Msa0421470-mRNA-1:exon:16919;Parent=Msa0421470-mRNA-1 |
| chr3_2 | exon | 70409376 | 70409555 | 70409376 | ID=Msa0421470-mRNA-1:exon:16920;Parent=Msa0421470-mRNA-1 |
| chr3_2 | exon | 70410549 | 70410679 | 70410549 | ID=Msa0421470-mRNA-1:exon:16921;Parent=Msa0421470-mRNA-1 |
| chr3_2 | exon | 70410802 | 70410963 | 70410802 | ID=Msa0421470-mRNA-1:exon:16922;Parent=Msa0421470-mRNA-1 |
| chr3_2 | exon | 70412406 | 70412516 | 70412406 | ID=Msa0421470-mRNA-1:exon:16923;Parent=Msa0421470-mRNA-1 |
| chr3_2 | exon | 70413197 | 70413453 | 70413197 | ID=Msa0421470-mRNA-1:exon:16924;Parent=Msa0421470-mRNA-1 |
| chr3_2 | five_prime_UTR | 70408705 | 70408715 | 70408705 | ID=Msa0421470-mRNA-1:five_prime_utr;Parent=Msa0421470-mRNA-1 |
| chr3_2 | CDS | 70408716 | 70408983 | 70408716 | ID=Msa0421470-mRNA-1:cds;Parent=Msa0421470-mRNA-1 |
| chr3_2 | CDS | 70409376 | 70409555 | 70409376 | ID=Msa0421470-mRNA-1:cds;Parent=Msa0421470-mRNA-1 |
| chr3_2 | CDS | 70410549 | 70410679 | 70410549 | ID=Msa0421470-mRNA-1:cds;Parent=Msa0421470-mRNA-1 |
| chr3_2 | CDS | 70410802 | 70410963 | 70410802 | ID=Msa0421470-mRNA-1:cds;Parent=Msa0421470-mRNA-1 |
| chr3_2 | CDS | 70412406 | 70412516 | 70412406 | ID=Msa0421470-mRNA-1:cds;Parent=Msa0421470-mRNA-1 |
| chr3_2 | CDS | 70413197 | 70413271 | 70413197 | ID=Msa0421470-mRNA-1:cds;Parent=Msa0421470-mRNA-1 |
| chr3_2 | three_prime_UTR | 70413272 | 70413453 | 70413272 | ID=Msa0421470-mRNA-1:three_prime_utr;Parent=Msa0421470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
