Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467450 | XP_024634043.1 | 92.283 | 311 | 17 | 1 | 1 | 304 | 1 | 311 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467450 | sp|Q84LH3|WEX_ARATH | 46.763 | 278 | 131 | 4 | 26 | 288 | 9 | 284 | 1.17e-79 | 246 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467450 | A0A396IWX4 | 92.283 | 311 | 17 | 1 | 1 | 304 | 1 | 311 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0372920 | Msa0467450 | 0.845398 | 4.164007e-59 | -8.615850e-47 |
| Msa0421470 | Msa0467450 | 0.881549 | 2.188057e-70 | -8.615850e-47 |
| Msa0467450 | Msa0745640 | 0.836870 | 7.261815e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467450 | MtrunA17_Chr3g0121831 | 92.283 | 311 | 17 | 1 | 1 | 304 | 1 | 311 | 0.0 | 533 |
| Msa0467450 | MtrunA17_Chr7g0241401 | 39.860 | 143 | 82 | 4 | 131 | 271 | 84 | 224 | 2.32e-25 | 101 |
| Msa0467450 | MtrunA17_Chr7g0241341 | 35.862 | 145 | 90 | 3 | 133 | 276 | 45 | 187 | 3.33e-23 | 94.7 |
| Msa0467450 | MtrunA17_Chr7g0241411 | 36.986 | 146 | 88 | 4 | 133 | 276 | 80 | 223 | 8.13e-22 | 92.0 |
| Msa0467450 | MtrunA17_Chr4g0070431 | 34.731 | 167 | 100 | 6 | 114 | 276 | 38 | 199 | 2.54e-17 | 79.3 |
| Msa0467450 | MtrunA17_Chr7g0241391 | 33.846 | 130 | 82 | 3 | 150 | 276 | 81 | 209 | 2.51e-13 | 68.2 |
| Msa0467450 | MtrunA17_Chr1g0192551 | 33.133 | 166 | 88 | 8 | 133 | 287 | 375 | 528 | 2.25e-12 | 67.4 |
| Msa0467450 | MtrunA17_Chr7g0241381 | 29.231 | 130 | 90 | 2 | 149 | 276 | 53 | 182 | 8.46e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0467450 | AT4G13870.2 | 46.763 | 278 | 131 | 4 | 26 | 288 | 9 | 284 | 1.19e-80 | 246 |
| Msa0467450 | AT4G13870.1 | 46.763 | 278 | 128 | 5 | 26 | 288 | 9 | 281 | 3.85e-78 | 239 |
| Msa0467450 | AT4G13885.1 | 42.342 | 111 | 27 | 1 | 178 | 288 | 186 | 259 | 2.72e-19 | 85.9 |
| Msa0467450 | AT1G56310.2 | 32.727 | 165 | 91 | 6 | 133 | 286 | 381 | 536 | 1.75e-12 | 68.2 |
| Msa0467450 | AT1G56310.1 | 32.727 | 165 | 91 | 6 | 133 | 286 | 381 | 536 | 1.75e-12 | 68.2 |
Find 77 sgRNAs with CRISPR-Local
Find 391 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTCTTGGTTTCTCTATC+AGG | 0.185259 | 3_3:+68738780 | Msa0467450:CDS |
| TCGGCAACTTCCTGGGCATC+TGG | 0.234563 | 3_3:-68739497 | None:intergenic |
| GATTATTTCATATCCATTAA+AGG | 0.237423 | 3_3:+68737130 | Msa0467450:CDS |
| AGTTGCTCCTTTGACAAATA+AGG | 0.254115 | 3_3:-68738733 | None:intergenic |
| AAGGTCTTCCACACCTTTAA+TGG | 0.256939 | 3_3:-68737143 | None:intergenic |
| GTTCTTCATCTAATTCATTC+TGG | 0.263565 | 3_3:+68736894 | Msa0467450:CDS |
| GATTGGCGGTGATGCTTCTA+AGG | 0.264433 | 3_3:+68737099 | Msa0467450:CDS |
| GCAAAATAAGAATGGGGAAT+TGG | 0.279134 | 3_3:+68738704 | Msa0467450:CDS |
| TTCCCACAAAACTTCATTAC+AGG | 0.290923 | 3_3:-68735689 | None:intergenic |
| CAGGTAACCTCATCTTTAAA+TGG | 0.311083 | 3_3:-68735670 | None:intergenic |
| ATCCAGTAGACTTGATTTCT+TGG | 0.335829 | 3_3:-68739669 | None:intergenic |
| CAAAATAAGAATGGGGAATT+GGG | 0.341744 | 3_3:+68738705 | Msa0467450:CDS |
| ATCGTTCAGGCGATGGAAAA+AGG | 0.346617 | 3_3:+68734766 | Msa0467450:CDS |
| GACGGCCGCTGCTGCGGCGA+GGG | 0.355367 | 3_3:-68734932 | None:intergenic |
| TCAAGATCTTCCTGGGATAA+AGG | 0.355915 | 3_3:-68734840 | None:intergenic |
| CTCTCTTTCTCACCTTCTCC+AGG | 0.359477 | 3_3:+68734996 | Msa0467450:CDS |
| GATGCAAGACCCCACTTATT+CGG | 0.360319 | 3_3:-68737199 | None:intergenic |
| ACGGCCGCTGCTGCGGCGAG+GGG | 0.363429 | 3_3:-68734931 | None:intergenic |
| CAATGGCTTCAAGATCTTCC+TGG | 0.382197 | 3_3:-68734848 | None:intergenic |
| GACATTTACAAGGTTGGAGC+GGG | 0.411059 | 3_3:+68737076 | Msa0467450:intron |
| TCCAGTAGACTTGATTTCTT+GGG | 0.427807 | 3_3:-68739668 | None:intergenic |
| CGGCCGCTGCTGCGGCGAGG+GGG | 0.437907 | 3_3:-68734930 | None:intergenic |
| TACAAGGTTGGAGCGGGGAT+TGG | 0.439136 | 3_3:+68737082 | Msa0467450:intron |
| CAATCGGATTTGACATTGAG+TGG | 0.443247 | 3_3:+68735807 | Msa0467450:CDS |
| TCCCAAGAAATCAAGTCTAC+TGG | 0.444531 | 3_3:+68739667 | Msa0467450:three_prime_UTR |
| GGTGAGAAAGAGAGAGAAGG+TGG | 0.448106 | 3_3:-68734987 | None:intergenic |
| AAGGTTGGAGCGGGGATTGG+CGG | 0.452888 | 3_3:+68737085 | Msa0467450:intron |
| GGGAGAGTGAGAGATGAAGT+TGG | 0.460016 | 3_3:-68734910 | None:intergenic |
| AAGCCCAGCAAAATAAGAAT+GGG | 0.463753 | 3_3:+68738697 | Msa0467450:CDS |
| CGACGGCCGCTGCTGCGGCG+AGG | 0.474703 | 3_3:-68734933 | None:intergenic |
| GTGGGAAAATTATGTACAGC+AGG | 0.478430 | 3_3:+68735705 | Msa0467450:CDS |
| TTTGATTAGCGTGATAAGAA+AGG | 0.480610 | 3_3:-68737162 | None:intergenic |
| TAGGTGGAGGTCCGAATAAG+TGG | 0.494543 | 3_3:+68737188 | Msa0467450:CDS |
| CGGCAACTTCCTGGGCATCT+GGG | 0.500387 | 3_3:-68739496 | None:intergenic |
| GTGAGAGATGAAGTTGGTGG+TGG | 0.501151 | 3_3:-68734904 | None:intergenic |
| AGATTGAAGAGTGGCGTCAA+TGG | 0.502315 | 3_3:-68734865 | None:intergenic |
| GAAGCCCAGCAAAATAAGAA+TGG | 0.502994 | 3_3:+68738696 | Msa0467450:CDS |
| TTGATGGATCGTTCAGGCGA+TGG | 0.505411 | 3_3:+68734759 | Msa0467450:exon |
| CACTCAATGTCAAATCCGAT+TGG | 0.505854 | 3_3:-68735806 | None:intergenic |
| TGGGAGAGAAGATTGAAGAG+TGG | 0.509346 | 3_3:-68734874 | None:intergenic |
| GGAGACTCCTTATTTGTCAA+AGG | 0.525820 | 3_3:+68738726 | Msa0467450:CDS |
| AGTAAAAGCTGTAGATTTCG+AGG | 0.526432 | 3_3:-68736921 | None:intergenic |
| TAAAGATCTCCCAGATGCCC+AGG | 0.529380 | 3_3:+68739487 | Msa0467450:CDS |
| GTGAGAAAGAGAGAGAAGGT+GGG | 0.530800 | 3_3:-68734986 | None:intergenic |
| CTCGCATTCGCACACGAATG+AGG | 0.537585 | 3_3:-68734817 | None:intergenic |
| GTAAGCGACGGCCGCTGCTG+CGG | 0.540903 | 3_3:-68734938 | None:intergenic |
| AATGGCTTCAAGATCTTCCT+GGG | 0.547393 | 3_3:-68734847 | None:intergenic |
| TGCAAGGCCATTTAAAGATG+AGG | 0.550092 | 3_3:+68735663 | Msa0467450:intron |
| TTTCATATCCATTAAAGGTG+TGG | 0.552455 | 3_3:+68737135 | Msa0467450:CDS |
| AAGGAAGTGGGACCTGGAGA+AGG | 0.558794 | 3_3:-68735008 | None:intergenic |
| GAGATGATGCAAATTCCAAT+CGG | 0.569168 | 3_3:+68735791 | Msa0467450:CDS |
| CAGCAGGACATTTAATGATG+TGG | 0.569177 | 3_3:+68735721 | Msa0467450:CDS |
| ACTTCTACAGGTGTTCCACC+CGG | 0.569270 | 3_3:+68736825 | Msa0467450:intron |
| GACAAAAGTAGTGAAGTTGA+TGG | 0.571140 | 3_3:+68739518 | Msa0467450:CDS |
| TGGAGACCCACCTTCAAAAG+AGG | 0.572553 | 3_3:+68735827 | Msa0467450:CDS |
| CGAATGCGAGCCTTTATCCC+AGG | 0.575805 | 3_3:+68734830 | Msa0467450:CDS |
| CCAAGAAGCAAAAGCATCTG+TGG | 0.579851 | 3_3:-68738767 | None:intergenic |
| TATCACGCTAATCAAAAGCT+AGG | 0.580739 | 3_3:+68737169 | Msa0467450:CDS |
| AGGAGGAGCTTGGTTTCGAG+CGG | 0.580987 | 3_3:+68734790 | Msa0467450:CDS |
| TGAGAGATGAAGTTGGTGGT+GGG | 0.583728 | 3_3:-68734903 | None:intergenic |
| CACTACACAGACATGAGATA+CGG | 0.589449 | 3_3:-68739557 | None:intergenic |
| GAAGGTGAGAAAGAGAGAGA+AGG | 0.591518 | 3_3:-68734990 | None:intergenic |
| GTAAAAGCTGTAGATTTCGA+GGG | 0.592056 | 3_3:-68736920 | None:intergenic |
| TGAAGAGCGATGAGCGATGT+GGG | 0.592673 | 3_3:-68734960 | None:intergenic |
| AGGTGGAGGTCCGAATAAGT+GGG | 0.596759 | 3_3:+68737189 | Msa0467450:CDS |
| ATGAGATACGGTCATTGTTG+CGG | 0.601141 | 3_3:-68739545 | None:intergenic |
| AGAGTGAGAGATGAAGTTGG+TGG | 0.606417 | 3_3:-68734907 | None:intergenic |
| GCTAATCAAAAGCTAGGTGG+AGG | 0.615154 | 3_3:+68737175 | Msa0467450:CDS |
| CTTCTACAGGTGTTCCACCC+GGG | 0.615423 | 3_3:+68736826 | Msa0467450:intron |
| TTGAAGAGCGATGAGCGATG+TGG | 0.628089 | 3_3:-68734961 | None:intergenic |
| TGAGCGATGTGGGTAAGCGA+CGG | 0.634153 | 3_3:-68734950 | None:intergenic |
| CACGCTAATCAAAAGCTAGG+TGG | 0.649833 | 3_3:+68737172 | Msa0467450:CDS |
| AATAGAAACCTTCAAAACTG+AGG | 0.653917 | 3_3:-68736952 | None:intergenic |
| TGACATTTACAAGGTTGGAG+CGG | 0.658927 | 3_3:+68737075 | Msa0467450:intron |
| ACATTTACAAGGTTGGAGCG+GGG | 0.659916 | 3_3:+68737077 | Msa0467450:intron |
| AGCCCAGCAAAATAAGAATG+GGG | 0.678211 | 3_3:+68738698 | Msa0467450:CDS |
| GGTGGAGGTCCGAATAAGTG+GGG | 0.701955 | 3_3:+68737190 | Msa0467450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTTATATTATTATGAC+AGG | + | chr3_3:68737556-68737575 | Msa0467450:intron | 10.0% |
| !!! | ATTTTTATATTATTATGACA+GGG | + | chr3_3:68737557-68737576 | Msa0467450:intron | 10.0% |
| !! | ATCAATTAAATTAAAAATAC+CGG | - | chr3_3:68739714-68739733 | None:intergenic | 10.0% |
| !! | TATTAAATAAATCTCTGTTT+AGG | - | chr3_3:68735242-68735261 | None:intergenic | 15.0% |
| !!! | TACTTTTTGTTTACTTATAT+TGG | + | chr3_3:68735391-68735410 | Msa0467450:intron | 15.0% |
| !!! | TATTAAAGTATTGTAGTTTT+AGG | - | chr3_3:68736728-68736747 | None:intergenic | 15.0% |
| !! | ATATTACTTATTATAATTGC+AGG | - | chr3_3:68737758-68737777 | None:intergenic | 15.0% |
| !!! | ATATAATTTTTAGACATCAT+CGG | + | chr3_3:68737965-68737984 | Msa0467450:intron | 15.0% |
| !! | AGATAACAATTAAAAGATTT+AGG | + | chr3_3:68738096-68738115 | Msa0467450:intron | 15.0% |
| !! | GATAACAATTAAAAGATTTA+GGG | + | chr3_3:68738097-68738116 | Msa0467450:intron | 15.0% |
| !!! | TGAAAATTCTAAAACTTATT+TGG | + | chr3_3:68738166-68738185 | Msa0467450:intron | 15.0% |
| !! | ATTGATTGAATTTACTATTT+AGG | - | chr3_3:68739357-68739376 | None:intergenic | 15.0% |
| !! | AGTAAAGTAATCAATATAGT+GGG | - | chr3_3:68735042-68735061 | None:intergenic | 20.0% |
| !! | AAGTAAAGTAATCAATATAG+TGG | - | chr3_3:68735043-68735062 | None:intergenic | 20.0% |
| !! | TGAAAACAAAATTCAAATAC+TGG | - | chr3_3:68735311-68735330 | None:intergenic | 20.0% |
| !! | ATAGAAAAATTATGAGATTC+AGG | - | chr3_3:68735524-68735543 | None:intergenic | 20.0% |
| !!! | CTCATAATTTTTCTATTTCA+TGG | + | chr3_3:68735528-68735547 | Msa0467450:intron | 20.0% |
| !!! | ATTTCATCAATATTTCCTTT+TGG | + | chr3_3:68735604-68735623 | Msa0467450:intron | 20.0% |
| !! | AAGTTTATTAGAAAACCAAA+AGG | - | chr3_3:68735622-68735641 | None:intergenic | 20.0% |
| !!! | AGAAAATTCGATGTTTTTAT+TGG | + | chr3_3:68736096-68736115 | Msa0467450:intron | 20.0% |
| !!! | AAAAAAGTAATTTGAAGTTG+TGG | - | chr3_3:68736761-68736780 | None:intergenic | 20.0% |
| !! | GATTATTTCATATCCATTAA+AGG | + | chr3_3:68737130-68737149 | Msa0467450:CDS | 20.0% |
| !! | TTTAAAAAACAGAATCAAAC+AGG | - | chr3_3:68738123-68738142 | None:intergenic | 20.0% |
| !!! | ATGTTTTTAGTTTTGGAAAT+TGG | - | chr3_3:68738293-68738312 | None:intergenic | 20.0% |
| !! | AATTTCCAAAACTAAAAACA+TGG | + | chr3_3:68738292-68738311 | Msa0467450:intron | 20.0% |
| !!! | ATGTGGTATATTTTCATTAA+TGG | + | chr3_3:68738317-68738336 | Msa0467450:intron | 20.0% |
| !!! | TTTTAAATGTGTTGTATCTT+AGG | - | chr3_3:68739239-68739258 | None:intergenic | 20.0% |
| ! | TAAAGTAATCAATATAGTGG+GGG | - | chr3_3:68735040-68735059 | None:intergenic | 25.0% |
| ! | GTAAAGTAATCAATATAGTG+GGG | - | chr3_3:68735041-68735060 | None:intergenic | 25.0% |
| ! | ACTGGAAATCAACATAAATT+GGG | - | chr3_3:68735118-68735137 | None:intergenic | 25.0% |
| ! | AACTGGAAATCAACATAAAT+TGG | - | chr3_3:68735119-68735138 | None:intergenic | 25.0% |
| !!! | TATGTTGATTTCCAGTTTAT+AGG | + | chr3_3:68735122-68735141 | Msa0467450:intron | 25.0% |
| !! | TATTTTCTCTTCCTATAAAC+TGG | - | chr3_3:68735136-68735155 | None:intergenic | 25.0% |
| ! | GTGTAAATGAATTTAACACT+AGG | - | chr3_3:68735195-68735214 | None:intergenic | 25.0% |
| ! | GTTAAATTCATTTACACTGA+CGG | + | chr3_3:68735198-68735217 | Msa0467450:intron | 25.0% |
| !! | TATTTTGTAGAGAAAGAGAT+AGG | - | chr3_3:68735571-68735590 | None:intergenic | 25.0% |
| !!! | ATGTCTTTTTTATTGTTGCA+AGG | + | chr3_3:68735647-68735666 | Msa0467450:intron | 25.0% |
| !!! | TCTTTTCTTCAATGCTTTTT+AGG | - | chr3_3:68735766-68735785 | None:intergenic | 25.0% |
| !! | TTGCCAATATTGTTACTTAA+AGG | - | chr3_3:68735934-68735953 | None:intergenic | 25.0% |
| ! | TTTGGTATTTGTATCTGTTT+GGG | + | chr3_3:68736029-68736048 | Msa0467450:intron | 25.0% |
| !! | AAACATCGAATTTTCTTTAC+TGG | - | chr3_3:68736092-68736111 | None:intergenic | 25.0% |
| !! | TAACAGTTTTCTTCATTGTT+TGG | + | chr3_3:68736193-68736212 | Msa0467450:intron | 25.0% |
| ! | GGTTTCTATTTACTTTAAAC+TGG | + | chr3_3:68736965-68736984 | Msa0467450:intron | 25.0% |
| ! | TATGATGTTTGACATTTACA+AGG | + | chr3_3:68737066-68737085 | Msa0467450:intron | 25.0% |
| !!! | CTGTTTTGATAGAAGTTTTT+CGG | - | chr3_3:68737230-68737249 | None:intergenic | 25.0% |
| ! | TACCAGATATAACATAAGAA+TGG | - | chr3_3:68737424-68737443 | None:intergenic | 25.0% |
| ! | AAAATAAATTCTTCCCCAAA+AGG | - | chr3_3:68737542-68737561 | None:intergenic | 25.0% |
| ! | TAAACTATACATGTAATGTC+AGG | - | chr3_3:68737620-68737639 | None:intergenic | 25.0% |
| !!! | ACTAGCACATTTTTTTAAAG+CGG | - | chr3_3:68737692-68737711 | None:intergenic | 25.0% |
| !! | GCAAAACATAAAACAGTTTT+GGG | - | chr3_3:68738216-68738235 | None:intergenic | 25.0% |
| !! | AGCAAAACATAAAACAGTTT+TGG | - | chr3_3:68738217-68738236 | None:intergenic | 25.0% |
| !!! | CATTTCCATGTTTTTAGTTT+TGG | - | chr3_3:68738300-68738319 | None:intergenic | 25.0% |
| ! | AAACTAAAAACATGGAAATG+TGG | + | chr3_3:68738300-68738319 | Msa0467450:intron | 25.0% |
| !!! | ATGGCATTTTAGTAAATTAG+TGG | + | chr3_3:68738336-68738355 | Msa0467450:intron | 25.0% |
| ! | AAGAAATAAGATTATCAAGC+AGG | + | chr3_3:68738388-68738407 | Msa0467450:intron | 25.0% |
| ! | AAATAAAAAACGGTGGAAAA+TGG | - | chr3_3:68738553-68738572 | None:intergenic | 25.0% |
| ! | AGGCCAAAGAAAATAAAAAA+CGG | - | chr3_3:68738563-68738582 | None:intergenic | 25.0% |
| ! | TGTCATGATTTGATAAAGTT+TGG | + | chr3_3:68738849-68738868 | Msa0467450:intron | 25.0% |
| ! | TAAAAGTTAATCTAGTTGCA+GGG | + | chr3_3:68738913-68738932 | Msa0467450:intron | 25.0% |
| ! | TAGAAACTTAAGTATGAGAT+AGG | + | chr3_3:68738943-68738962 | Msa0467450:intron | 25.0% |
| TTCCAATTAAGCCAGTAAAA+CGG | - | chr3_3:68735469-68735488 | None:intergenic | 30.0% | |
| !! | TTTACTGGCTTAATTGGAAA+CGG | + | chr3_3:68735470-68735489 | Msa0467450:intron | 30.0% |
| ! | TTACCTGTAATGAAGTTTTG+TGG | + | chr3_3:68735686-68735705 | Msa0467450:CDS | 30.0% |
| !! | TACCTGTAATGAAGTTTTGT+GGG | + | chr3_3:68735687-68735706 | Msa0467450:CDS | 30.0% |
| GTAATAGAGTCAATACAACT+AGG | - | chr3_3:68735903-68735922 | None:intergenic | 30.0% | |
| ! | CCAATATTGTTACTTAAAGG+CGG | - | chr3_3:68735931-68735950 | None:intergenic | 30.0% |
| !!! | TTGATCAACTAGTTTTGGTT+TGG | + | chr3_3:68736011-68736030 | Msa0467450:intron | 30.0% |
| GTTTGGTATTTGTATCTGTT+TGG | + | chr3_3:68736028-68736047 | Msa0467450:intron | 30.0% | |
| TGAAAAGATAAGAACATAGG+TGG | - | chr3_3:68736285-68736304 | None:intergenic | 30.0% | |
| TGCTGAAAAGATAAGAACAT+AGG | - | chr3_3:68736288-68736307 | None:intergenic | 30.0% | |
| !!! | GAAAGTTTTGGAAAAAAGGA+AGG | + | chr3_3:68736376-68736395 | Msa0467450:intron | 30.0% |
| CAAGTGGAAGAAATAACATT+GGG | + | chr3_3:68736401-68736420 | Msa0467450:intron | 30.0% | |
| GGGAACTAAAAAGTTGTATT+GGG | + | chr3_3:68736482-68736501 | Msa0467450:intron | 30.0% | |
| GGAACTAAAAAGTTGTATTG+GGG | + | chr3_3:68736483-68736502 | Msa0467450:intron | 30.0% | |
| GAACTAAAAAGTTGTATTGG+GGG | + | chr3_3:68736484-68736503 | Msa0467450:intron | 30.0% | |
| !!! | TGTAGTTTTAGGCTTTGTTT+GGG | - | chr3_3:68736717-68736736 | None:intergenic | 30.0% |
| !!! | TTGTAGTTTTAGGCTTTGTT+TGG | - | chr3_3:68736718-68736737 | None:intergenic | 30.0% |
| GTATTGTATGAAACTTCTAC+AGG | + | chr3_3:68736813-68736832 | Msa0467450:intron | 30.0% | |
| GTTCTTCATCTAATTCATTC+TGG | + | chr3_3:68736894-68736913 | Msa0467450:CDS | 30.0% | |
| AATAGAAACCTTCAAAACTG+AGG | - | chr3_3:68736955-68736974 | None:intergenic | 30.0% | |
| ! | TTGTTTTCCTTTCTATCTGT+AGG | + | chr3_3:68737004-68737023 | Msa0467450:intron | 30.0% |
| ATTAGTTCCTACAGATAGAA+AGG | - | chr3_3:68737014-68737033 | None:intergenic | 30.0% | |
| ATGTTTGACATTTACAAGGT+TGG | + | chr3_3:68737070-68737089 | Msa0467450:intron | 30.0% | |
| TTTCATATCCATTAAAGGTG+TGG | + | chr3_3:68737135-68737154 | Msa0467450:CDS | 30.0% | |
| TTTGATTAGCGTGATAAGAA+AGG | - | chr3_3:68737165-68737184 | None:intergenic | 30.0% | |
| CGAAAAACTTCTATCAAAAC+AGG | + | chr3_3:68737228-68737247 | Msa0467450:CDS | 30.0% | |
| CATATTTCTTAAAAACCGAC+TGG | + | chr3_3:68737264-68737283 | Msa0467450:intron | 30.0% | |
| ! | ATCAGGTGTTTGAAGAATTT+TGG | - | chr3_3:68737316-68737335 | None:intergenic | 30.0% |
| AAAATTCTTCAAACACCTGA+TGG | + | chr3_3:68737315-68737334 | Msa0467450:intron | 30.0% | |
| CACCATTCTTATGTTATATC+TGG | + | chr3_3:68737419-68737438 | Msa0467450:intron | 30.0% | |
| ! | GTTTCCTTTGAAAGTTTCTT+CGG | + | chr3_3:68737444-68737463 | Msa0467450:intron | 30.0% |
| ! | TTTTCCTTATCTCTAGATAC+AGG | - | chr3_3:68737470-68737489 | None:intergenic | 30.0% |
| GTATCTAGAGATAAGGAAAA+TGG | + | chr3_3:68737470-68737489 | Msa0467450:intron | 30.0% | |
| ! | TCAATGCTTTAACTACCTTT+TGG | + | chr3_3:68737524-68737543 | Msa0467450:intron | 30.0% |
| ! | CAATGCTTTAACTACCTTTT+GGG | + | chr3_3:68737525-68737544 | Msa0467450:intron | 30.0% |
| ! | AATGCTTTAACTACCTTTTG+GGG | + | chr3_3:68737526-68737545 | Msa0467450:intron | 30.0% |
| !!! | TTTTTTTAAAGCGGATAGAG+AGG | - | chr3_3:68737683-68737702 | None:intergenic | 30.0% |
| ATTTCCAATTACTGAGTAGT+AGG | + | chr3_3:68737793-68737812 | Msa0467450:intron | 30.0% | |
| TTTACCTACTACTCAGTAAT+TGG | - | chr3_3:68737800-68737819 | None:intergenic | 30.0% | |
| ! | ATGCTGATTAAGTTCTTCAA+AGG | + | chr3_3:68737921-68737940 | Msa0467450:intron | 30.0% |
| ! | TGCTGATTAAGTTCTTCAAA+GGG | + | chr3_3:68737922-68737941 | Msa0467450:intron | 30.0% |
| AACTGAAAACACAATCAAAC+AGG | + | chr3_3:68738480-68738499 | Msa0467450:intron | 30.0% | |
| GGAAAATGGATACTAAAGAA+AGG | - | chr3_3:68738539-68738558 | None:intergenic | 30.0% | |
| CCAAAGAAAATAAAAAACGG+TGG | - | chr3_3:68738560-68738579 | None:intergenic | 30.0% | |
| !!! | CCACCGTTTTTTATTTTCTT+TGG | + | chr3_3:68738557-68738576 | Msa0467450:intron | 30.0% |
| !!! | TTTTATTTTCTTTGGCCTTG+CGG | + | chr3_3:68738565-68738584 | Msa0467450:intron | 30.0% |
| GCTGCAAAAATAAATAAGCT+TGG | - | chr3_3:68738672-68738691 | None:intergenic | 30.0% | |
| CAAAATAAGAATGGGGAATT+GGG | + | chr3_3:68738705-68738724 | Msa0467450:CDS | 30.0% | |
| GGTAATAAGGAATTCTTTGA+TGG | + | chr3_3:68738801-68738820 | Msa0467450:intron | 30.0% | |
| CTAAAAGTTAATCTAGTTGC+AGG | + | chr3_3:68738912-68738931 | Msa0467450:intron | 30.0% | |
| AAAAGTTAATCTAGTTGCAG+GGG | + | chr3_3:68738914-68738933 | Msa0467450:intron | 30.0% | |
| GACAAATAGATTAAGAGAGT+TGG | - | chr3_3:68739307-68739326 | None:intergenic | 30.0% | |
| ! | TTTACTATTTAGGACTCGTA+CGG | - | chr3_3:68739347-68739366 | None:intergenic | 30.0% |
| ACAAGTTTGAAAACAAGATG+AGG | - | chr3_3:68739397-68739416 | None:intergenic | 30.0% | |
| ! | TCTGCAAAAGTATACAAGAA+CGG | - | chr3_3:68739463-68739482 | None:intergenic | 30.0% |
| !! | ATCAACTTCACTACTTTTGT+CGG | - | chr3_3:68739519-68739538 | None:intergenic | 30.0% |
| TAAAAATACCGGCCATAAAA+GGG | - | chr3_3:68739703-68739722 | None:intergenic | 30.0% | |
| TTAAAAATACCGGCCATAAA+AGG | - | chr3_3:68739704-68739723 | None:intergenic | 30.0% | |
| !! | AACATTTTGATGGATCGTTC+AGG | + | chr3_3:68734753-68734772 | Msa0467450:exon | 35.0% |
| TCTCTGTTTAGGAACTTCAA+TGG | - | chr3_3:68735231-68735250 | None:intergenic | 35.0% | |
| ! | TGTTTTCATGTAAGTGCTTG+TGG | + | chr3_3:68735323-68735342 | Msa0467450:intron | 35.0% |
| ATTCCATCCAAGTTTCAAAC+TGG | + | chr3_3:68735354-68735373 | Msa0467450:intron | 35.0% | |
| !!! | TACCGTTTTACTGGCTTAAT+TGG | + | chr3_3:68735464-68735483 | Msa0467450:intron | 35.0% |
| !! | TGGAAACGGATGATTAGTTT+AGG | + | chr3_3:68735484-68735503 | Msa0467450:intron | 35.0% |
| AGAGATAGGATAAGTCTTCA+GGG | - | chr3_3:68735557-68735576 | None:intergenic | 35.0% | |
| AAGAGATAGGATAAGTCTTC+AGG | - | chr3_3:68735558-68735577 | None:intergenic | 35.0% | |
| CAGGTAACCTCATCTTTAAA+TGG | - | chr3_3:68735673-68735692 | None:intergenic | 35.0% | |
| TTCCCACAAAACTTCATTAC+AGG | - | chr3_3:68735692-68735711 | None:intergenic | 35.0% | |
| GAGATGATGCAAATTCCAAT+CGG | + | chr3_3:68735791-68735810 | Msa0467450:CDS | 35.0% | |
| ! | TCTTGTTATGTTCAAGTAGC+TGG | + | chr3_3:68735861-68735880 | Msa0467450:intron | 35.0% |
| TATGTTCAAGTAGCTGGTTA+TGG | + | chr3_3:68735867-68735886 | Msa0467450:intron | 35.0% | |
| CCGCCTTTAAGTAACAATAT+TGG | + | chr3_3:68735928-68735947 | Msa0467450:intron | 35.0% | |
| !! | GGAAGTTGATCAACTAGTTT+TGG | + | chr3_3:68736006-68736025 | Msa0467450:intron | 35.0% |
| !! | TATCAACCTAGTTGTTTCTC+TGG | - | chr3_3:68736063-68736082 | None:intergenic | 35.0% |
| !! | AGAGAAACAACTAGGTTGAT+AGG | + | chr3_3:68736062-68736081 | Msa0467450:intron | 35.0% |
| ! | TTATTGGTTGAAGAACCTCA+AGG | + | chr3_3:68736112-68736131 | Msa0467450:intron | 35.0% |
| TATACTGCTATTCCCATGAA+AGG | - | chr3_3:68736148-68736167 | None:intergenic | 35.0% | |
| AGCACTTGTAAGTTGTAAGT+GGG | - | chr3_3:68736172-68736191 | None:intergenic | 35.0% | |
| AAGCACTTGTAAGTTGTAAG+TGG | - | chr3_3:68736173-68736192 | None:intergenic | 35.0% | |
| !! | TCATTGTTTGGCTCTTTACT+CGG | + | chr3_3:68736205-68736224 | Msa0467450:intron | 35.0% |
| AGTTGCAACAAAGCTATTAC+AGG | - | chr3_3:68736255-68736274 | None:intergenic | 35.0% | |
| ! | TTGTTCCTTTTGTGACTGTA+AGG | + | chr3_3:68736321-68736340 | Msa0467450:intron | 35.0% |
| !!! | AGGGGAAAGTTTTGGAAAAA+AGG | + | chr3_3:68736372-68736391 | Msa0467450:intron | 35.0% |
| GCAAGTGGAAGAAATAACAT+TGG | + | chr3_3:68736400-68736419 | Msa0467450:intron | 35.0% | |
| TGGAAGAAATAACATTGGGA+GGG | + | chr3_3:68736405-68736424 | Msa0467450:intron | 35.0% | |
| ATACAAAACCCTCCTCATAT+AGG | + | chr3_3:68736460-68736479 | Msa0467450:intron | 35.0% | |
| TACAAAACCCTCCTCATATA+GGG | + | chr3_3:68736461-68736480 | Msa0467450:intron | 35.0% | |
| !!! | CTTTTTAGTTCCCCTATATG+AGG | - | chr3_3:68736475-68736494 | None:intergenic | 35.0% |
| GGGGAACTAAAAAGTTGTAT+TGG | + | chr3_3:68736481-68736500 | Msa0467450:intron | 35.0% | |
| TAAAAAGTTGTATTGGGGGA+GGG | + | chr3_3:68736488-68736507 | Msa0467450:intron | 35.0% | |
| GTGGAAAATATAGAGGGAAA+TGG | - | chr3_3:68736655-68736674 | None:intergenic | 35.0% | |
| GTAAAAGCTGTAGATTTCGA+GGG | - | chr3_3:68736923-68736942 | None:intergenic | 35.0% | |
| AGTAAAAGCTGTAGATTTCG+AGG | - | chr3_3:68736924-68736943 | None:intergenic | 35.0% | |
| !! | TGAAGATTCCTCAGTTTTGA+AGG | + | chr3_3:68736944-68736963 | Msa0467450:CDS | 35.0% |
| TATCACGCTAATCAAAAGCT+AGG | + | chr3_3:68737169-68737188 | Msa0467450:CDS | 35.0% | |
| AAAAGTTTCTTTGTGCCATC+AGG | - | chr3_3:68737333-68737352 | None:intergenic | 35.0% | |
| ! | TTTTTATGCCCTTCCAAAAC+TGG | + | chr3_3:68737350-68737369 | Msa0467450:intron | 35.0% |
| ATAACATAAGAATGGTGAGC+AGG | - | chr3_3:68737416-68737435 | None:intergenic | 35.0% | |
| AACATTCCATTCGTTTAGTG+GGG | - | chr3_3:68737505-68737524 | None:intergenic | 35.0% | |
| GAACATTCCATTCGTTTAGT+GGG | - | chr3_3:68737506-68737525 | None:intergenic | 35.0% | |
| TGAACATTCCATTCGTTTAG+TGG | - | chr3_3:68737507-68737526 | None:intergenic | 35.0% | |
| ACTTAATCAGCATTGTGCAA+GGG | - | chr3_3:68737914-68737933 | None:intergenic | 35.0% | |
| AACTTAATCAGCATTGTGCA+AGG | - | chr3_3:68737915-68737934 | None:intergenic | 35.0% | |
| ATGACTAGTGGAGAAGAAAA+TGG | - | chr3_3:68738049-68738068 | None:intergenic | 35.0% | |
| ! | AGAACTGCTGAATAGTGTTT+TGG | + | chr3_3:68738257-68738276 | Msa0467450:intron | 35.0% |
| AAACAATCAAGCAGACACAT+GGG | - | chr3_3:68738515-68738534 | None:intergenic | 35.0% | |
| AAAACAATCAAGCAGACACA+TGG | - | chr3_3:68738516-68738535 | None:intergenic | 35.0% | |
| AAGCCCAGCAAAATAAGAAT+GGG | + | chr3_3:68738697-68738716 | Msa0467450:CDS | 35.0% | |
| !!! | TTCCCCATTCTTATTTTGCT+GGG | - | chr3_3:68738703-68738722 | None:intergenic | 35.0% |
| !!! | ATTCCCCATTCTTATTTTGC+TGG | - | chr3_3:68738704-68738723 | None:intergenic | 35.0% |
| GCAAAATAAGAATGGGGAAT+TGG | + | chr3_3:68738704-68738723 | Msa0467450:CDS | 35.0% | |
| AGTTGCTCCTTTGACAAATA+AGG | - | chr3_3:68738736-68738755 | None:intergenic | 35.0% | |
| GGTTTCTCTATCAGGTAATA+AGG | + | chr3_3:68738788-68738807 | Msa0467450:intron | 35.0% | |
| TTTGAGTGATTAAGAGATGG+AGG | - | chr3_3:68739180-68739199 | None:intergenic | 35.0% | |
| GTGTTTGAGTGATTAAGAGA+TGG | - | chr3_3:68739183-68739202 | None:intergenic | 35.0% | |
| TACGGGGACATGATAAAATA+AGG | - | chr3_3:68739329-68739348 | None:intergenic | 35.0% | |
| ! | TTACTATTTAGGACTCGTAC+GGG | - | chr3_3:68739346-68739365 | None:intergenic | 35.0% |
| GTTTGAAAACAAGATGAGGT+TGG | - | chr3_3:68739393-68739412 | None:intergenic | 35.0% | |
| TACAAGAACGGTTGTATTAC+TGG | - | chr3_3:68739451-68739470 | None:intergenic | 35.0% | |
| GACAAAAGTAGTGAAGTTGA+TGG | + | chr3_3:68739518-68739537 | Msa0467450:CDS | 35.0% | |
| TCCAGTAGACTTGATTTCTT+GGG | - | chr3_3:68739671-68739690 | None:intergenic | 35.0% | |
| ATCCAGTAGACTTGATTTCT+TGG | - | chr3_3:68739672-68739691 | None:intergenic | 35.0% | |
| TCAAGATCTTCCTGGGATAA+AGG | - | chr3_3:68734843-68734862 | None:intergenic | 40.0% | |
| AATGGCTTCAAGATCTTCCT+GGG | - | chr3_3:68734850-68734869 | None:intergenic | 40.0% | |
| !!! | AGTTGGTGGTGGGTTTTTTT+GGG | - | chr3_3:68734896-68734915 | None:intergenic | 40.0% |
| !!! | AAGTTGGTGGTGGGTTTTTT+TGG | - | chr3_3:68734897-68734916 | None:intergenic | 40.0% |
| ! | TAATCAATATAGTGGGGGAG+AGG | - | chr3_3:68735035-68735054 | None:intergenic | 40.0% |
| ! | CTATGAGCCAGTTTGAAACT+TGG | - | chr3_3:68735364-68735383 | None:intergenic | 40.0% |
| !! | GTGCTTTGTTACCGTTTTAC+TGG | + | chr3_3:68735455-68735474 | Msa0467450:intron | 40.0% |
| TATGAGATTCAGGCTCAGTT+TGG | - | chr3_3:68735514-68735533 | None:intergenic | 40.0% | |
| TGCAAGGCCATTTAAAGATG+AGG | + | chr3_3:68735663-68735682 | Msa0467450:intron | 40.0% | |
| GTGGGAAAATTATGTACAGC+AGG | + | chr3_3:68735705-68735724 | Msa0467450:CDS | 40.0% | |
| CAGCAGGACATTTAATGATG+TGG | + | chr3_3:68735721-68735740 | Msa0467450:CDS | 40.0% | |
| CACTCAATGTCAAATCCGAT+TGG | - | chr3_3:68735809-68735828 | None:intergenic | 40.0% | |
| CAATCGGATTTGACATTGAG+TGG | + | chr3_3:68735807-68735826 | Msa0467450:CDS | 40.0% | |
| !! | AACCAACCTCTTTTGAAGGT+GGG | - | chr3_3:68735836-68735855 | None:intergenic | 40.0% |
| ! | ACCTTCAAAAGAGGTTGGTT+CGG | + | chr3_3:68735836-68735855 | Msa0467450:intron | 40.0% |
| TAGTATGCCTACAAGAGTGA+AGG | + | chr3_3:68735985-68736004 | Msa0467450:intron | 40.0% | |
| TCAACTTCCTTCACTCTTGT+AGG | - | chr3_3:68735995-68736014 | None:intergenic | 40.0% | |
| ! | TTTGTATCTGTTTGGGACCA+CGG | + | chr3_3:68736036-68736055 | Msa0467450:intron | 40.0% |
| ! | AAAGGACGTTTTCTTCCTTG+AGG | - | chr3_3:68736130-68736149 | None:intergenic | 40.0% |
| AGGAAGAAAACGTCCTTTCA+TGG | + | chr3_3:68736132-68736151 | Msa0467450:intron | 40.0% | |
| GGAAGAAAACGTCCTTTCAT+GGG | + | chr3_3:68736133-68736152 | Msa0467450:intron | 40.0% | |
| TTACTCGGTCACATAGCTTA+TGG | + | chr3_3:68736220-68736239 | Msa0467450:intron | 40.0% | |
| CAAAGCCTTACAGTCACAAA+AGG | - | chr3_3:68736329-68736348 | None:intergenic | 40.0% | |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | + | chr3_3:68736339-68736358 | Msa0467450:intron | 40.0% |
| GTGGAAGAAATAACATTGGG+AGG | + | chr3_3:68736404-68736423 | Msa0467450:intron | 40.0% | |
| GGAAGAAATAACATTGGGAG+GGG | + | chr3_3:68736406-68736425 | Msa0467450:intron | 40.0% | |
| ACAAAACCCTCCTCATATAG+GGG | + | chr3_3:68736462-68736481 | Msa0467450:intron | 40.0% | |
| TTAGTTCCCCTATATGAGGA+GGG | - | chr3_3:68736471-68736490 | None:intergenic | 40.0% | |
| ! | TTTAGTTCCCCTATATGAGG+AGG | - | chr3_3:68736472-68736491 | None:intergenic | 40.0% |
| CTAAAAAGTTGTATTGGGGG+AGG | + | chr3_3:68736487-68736506 | Msa0467450:intron | 40.0% | |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | - | chr3_3:68736710-68736729 | None:intergenic | 40.0% |
| TGACATTTACAAGGTTGGAG+CGG | + | chr3_3:68737075-68737094 | Msa0467450:intron | 40.0% | |
| AAGGTCTTCCACACCTTTAA+TGG | - | chr3_3:68737146-68737165 | None:intergenic | 40.0% | |
| !!! | TTAACCAGCCAGTTTTGGAA+GGG | - | chr3_3:68737361-68737380 | None:intergenic | 40.0% |
| ! | TCATGTTAACCAGCCAGTTT+TGG | - | chr3_3:68737366-68737385 | None:intergenic | 40.0% |
| TAAGAATGGTGAGCAGGTTT+GGG | - | chr3_3:68737410-68737429 | None:intergenic | 40.0% | |
| ATAAGAATGGTGAGCAGGTT+TGG | - | chr3_3:68737411-68737430 | None:intergenic | 40.0% | |
| TTATGACAGGGAGTCTATGT+AGG | + | chr3_3:68737569-68737588 | Msa0467450:intron | 40.0% | |
| ATAGAGAGGTAGGTCATATG+TGG | - | chr3_3:68737669-68737688 | None:intergenic | 40.0% | |
| ! | TTTAAAGCGGATAGAGAGGT+AGG | - | chr3_3:68737679-68737698 | None:intergenic | 40.0% |
| GCAACAATACAGATGACTAG+TGG | - | chr3_3:68738061-68738080 | None:intergenic | 40.0% | |
| AGCAGACACATGGGAATTAA+GGG | - | chr3_3:68738506-68738525 | None:intergenic | 40.0% | |
| AAGCAGACACATGGGAATTA+AGG | - | chr3_3:68738507-68738526 | None:intergenic | 40.0% | |
| GAAGCCCAGCAAAATAAGAA+TGG | + | chr3_3:68738696-68738715 | Msa0467450:CDS | 40.0% | |
| AGCCCAGCAAAATAAGAATG+GGG | + | chr3_3:68738698-68738717 | Msa0467450:CDS | 40.0% | |
| ! | GGAGACTCCTTATTTGTCAA+AGG | + | chr3_3:68738726-68738745 | Msa0467450:CDS | 40.0% |
| TGCTTCTTGGTTTCTCTATC+AGG | + | chr3_3:68738780-68738799 | Msa0467450:CDS | 40.0% | |
| TTAATCTAGTTGCAGGGGAT+TGG | + | chr3_3:68738919-68738938 | Msa0467450:intron | 40.0% | |
| CATGGAGTGATGTACACTAA+TGG | - | chr3_3:68739071-68739090 | None:intergenic | 40.0% | |
| AGTGATTAAGAGATGGAGGA+TGG | - | chr3_3:68739176-68739195 | None:intergenic | 40.0% | |
| ! | TACTATTTAGGACTCGTACG+GGG | - | chr3_3:68739345-68739364 | None:intergenic | 40.0% |
| ATGAGATACGGTCATTGTTG+CGG | - | chr3_3:68739548-68739567 | None:intergenic | 40.0% | |
| CACTACACAGACATGAGATA+CGG | - | chr3_3:68739560-68739579 | None:intergenic | 40.0% | |
| TCCCAAGAAATCAAGTCTAC+TGG | + | chr3_3:68739667-68739686 | Msa0467450:three_prime_UTR | 40.0% | |
| ! | GGATGATTCAGTCCCTTTTA+TGG | + | chr3_3:68739688-68739707 | Msa0467450:three_prime_UTR | 40.0% |
| ATCGTTCAGGCGATGGAAAA+AGG | + | chr3_3:68734766-68734785 | Msa0467450:CDS | 45.0% | |
| TCGTTCAGGCGATGGAAAAA+GGG | + | chr3_3:68734767-68734786 | Msa0467450:CDS | 45.0% | |
| CAATGGCTTCAAGATCTTCC+TGG | - | chr3_3:68734851-68734870 | None:intergenic | 45.0% | |
| AGATTGAAGAGTGGCGTCAA+TGG | - | chr3_3:68734868-68734887 | None:intergenic | 45.0% | |
| TGGGAGAGAAGATTGAAGAG+TGG | - | chr3_3:68734877-68734896 | None:intergenic | 45.0% | |
| !! | TGAGAGATGAAGTTGGTGGT+GGG | - | chr3_3:68734906-68734925 | None:intergenic | 45.0% |
| AGAGTGAGAGATGAAGTTGG+TGG | - | chr3_3:68734910-68734929 | None:intergenic | 45.0% | |
| GTGAGAAAGAGAGAGAAGGT+GGG | - | chr3_3:68734989-68735008 | None:intergenic | 45.0% | |
| GAAGGTGAGAAAGAGAGAGA+AGG | - | chr3_3:68734993-68735012 | None:intergenic | 45.0% | |
| ! | AATATAGTGGGGGAGAGGAA+AGG | - | chr3_3:68735030-68735049 | None:intergenic | 45.0% |
| TCACTGTTCCTGCATTCTGT+TGG | + | chr3_3:68735084-68735103 | Msa0467450:intron | 45.0% | |
| CCTAAATGCCAACAGAATGC+AGG | - | chr3_3:68735095-68735114 | None:intergenic | 45.0% | |
| CCTGCATTCTGTTGGCATTT+AGG | + | chr3_3:68735092-68735111 | Msa0467450:intron | 45.0% | |
| ! | GAGCCAGTTTGAAACTTGGA+TGG | - | chr3_3:68735360-68735379 | None:intergenic | 45.0% |
| !! | GAACCAACCTCTTTTGAAGG+TGG | - | chr3_3:68735837-68735856 | None:intergenic | 45.0% |
| ! | ACCGAACCAACCTCTTTTGA+AGG | - | chr3_3:68735840-68735859 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr3_3:68736343-68736362 | Msa0467450:intron | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | + | chr3_3:68736344-68736363 | Msa0467450:intron | 45.0% |
| GGAAAAAAGGAAGGAGCAAG+TGG | + | chr3_3:68736385-68736404 | Msa0467450:intron | 45.0% | |
| AGAAATAACATTGGGAGGGG+AGG | + | chr3_3:68736409-68736428 | Msa0467450:intron | 45.0% | |
| GAAATAACATTGGGAGGGGA+GGG | + | chr3_3:68736410-68736429 | Msa0467450:intron | 45.0% | |
| TGGGGGGTGGAAAATATAGA+GGG | - | chr3_3:68736661-68736680 | None:intergenic | 45.0% | |
| TTGGGGGGTGGAAAATATAG+AGG | - | chr3_3:68736662-68736681 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr3_3:68736706-68736725 | None:intergenic | 45.0% |
| GACATTTACAAGGTTGGAGC+GGG | + | chr3_3:68737076-68737095 | Msa0467450:intron | 45.0% | |
| ACATTTACAAGGTTGGAGCG+GGG | + | chr3_3:68737077-68737096 | Msa0467450:intron | 45.0% | |
| CACGCTAATCAAAAGCTAGG+TGG | + | chr3_3:68737172-68737191 | Msa0467450:CDS | 45.0% | |
| GCTAATCAAAAGCTAGGTGG+AGG | + | chr3_3:68737175-68737194 | Msa0467450:CDS | 45.0% | |
| GATGCAAGACCCCACTTATT+CGG | - | chr3_3:68737202-68737221 | None:intergenic | 45.0% | |
| AACCGACTGGATTGTGTACA+TGG | + | chr3_3:68737277-68737296 | Msa0467450:intron | 45.0% | |
| ACCGACTGGATTGTGTACAT+GGG | + | chr3_3:68737278-68737297 | Msa0467450:intron | 45.0% | |
| TCCCATGTACACAATCCAGT+CGG | - | chr3_3:68737282-68737301 | None:intergenic | 45.0% | |
| !!! | GTTAACCAGCCAGTTTTGGA+AGG | - | chr3_3:68737362-68737381 | None:intergenic | 45.0% |
| CAGGCCGAAGAAACTTTCAA+AGG | - | chr3_3:68737451-68737470 | None:intergenic | 45.0% | |
| TCGGCCTGTATCTAGAGATA+AGG | + | chr3_3:68737463-68737482 | Msa0467450:intron | 45.0% | |
| ACAGGGAGTCTATGTAGGTT+TGG | + | chr3_3:68737574-68737593 | Msa0467450:intron | 45.0% | |
| GTCATATGTGGCATTAGAGC+TGG | - | chr3_3:68737657-68737676 | None:intergenic | 45.0% | |
| TTGTGCAAGGGACAAAACTC+TGG | - | chr3_3:68737902-68737921 | None:intergenic | 45.0% | |
| !! | CCAAGAAGCAAAAGCATCTG+TGG | - | chr3_3:68738770-68738789 | None:intergenic | 45.0% |
| ! | CCACAGATGCTTTTGCTTCT+TGG | + | chr3_3:68738767-68738786 | Msa0467450:CDS | 45.0% |
| GTACACTAATGGCAACAGAG+TGG | - | chr3_3:68739060-68739079 | None:intergenic | 45.0% | |
| !! | CGATGATGATGGAGAGTGTT+GGG | - | chr3_3:68739127-68739146 | None:intergenic | 45.0% |
| GATTAAGAGATGGAGGATGG+CGG | - | chr3_3:68739173-68739192 | None:intergenic | 45.0% | |
| ! | ACTTTTGTCGGCAACTTCCT+GGG | - | chr3_3:68739507-68739526 | None:intergenic | 45.0% |
| ! | TACTTTTGTCGGCAACTTCC+TGG | - | chr3_3:68739508-68739527 | None:intergenic | 45.0% |
| ! | GATTCAGTCCCTTTTATGGC+CGG | + | chr3_3:68739692-68739711 | Msa0467450:three_prime_UTR | 45.0% |
| ! | TTGATGGATCGTTCAGGCGA+TGG | + | chr3_3:68734759-68734778 | Msa0467450:exon | 50.0% |
| TTCAGGCGATGGAAAAAGGG+AGG | + | chr3_3:68734770-68734789 | Msa0467450:CDS | 50.0% | |
| !! | GTGAGAGATGAAGTTGGTGG+TGG | - | chr3_3:68734907-68734926 | None:intergenic | 50.0% |
| GGGAGAGTGAGAGATGAAGT+TGG | - | chr3_3:68734913-68734932 | None:intergenic | 50.0% | |
| TGAAGAGCGATGAGCGATGT+GGG | - | chr3_3:68734963-68734982 | None:intergenic | 50.0% | |
| TTGAAGAGCGATGAGCGATG+TGG | - | chr3_3:68734964-68734983 | None:intergenic | 50.0% | |
| GGTGAGAAAGAGAGAGAAGG+TGG | - | chr3_3:68734990-68735009 | None:intergenic | 50.0% | |
| CTCTCTTTCTCACCTTCTCC+AGG | + | chr3_3:68734996-68735015 | Msa0467450:CDS | 50.0% | |
| GTTTACGCACGCACATGACA+TGG | + | chr3_3:68735156-68735175 | Msa0467450:intron | 50.0% | |
| TGGAGACCCACCTTCAAAAG+AGG | + | chr3_3:68735827-68735846 | Msa0467450:CDS | 50.0% | |
| GACCCACCTTCAAAAGAGGT+TGG | + | chr3_3:68735831-68735850 | Msa0467450:intron | 50.0% | |
| !! | CTAGTTGTTTCTCTGGTCCG+TGG | - | chr3_3:68736056-68736075 | None:intergenic | 50.0% |
| CACGGACCAGAGAAACAACT+AGG | + | chr3_3:68736054-68736073 | Msa0467450:intron | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | + | chr3_3:68736342-68736361 | Msa0467450:intron | 50.0% |
| TTTGCGAGTTTGGAGGGGAA+GGG | + | chr3_3:68736349-68736368 | Msa0467450:intron | 50.0% | |
| ! | GTTGTATTGGGGGAGGGTTT+TGG | + | chr3_3:68736494-68736513 | Msa0467450:intron | 50.0% |
| !!! | TATTGGGGGAGGGTTTTGGA+GGG | + | chr3_3:68736498-68736517 | Msa0467450:intron | 50.0% |
| TTTGGGAGTTTGGAGGGAAG+GGG | - | chr3_3:68736700-68736719 | None:intergenic | 50.0% | |
| GTTTGGGAGTTTGGAGGGAA+GGG | - | chr3_3:68736701-68736720 | None:intergenic | 50.0% | |
| TGTTTGGGAGTTTGGAGGGA+AGG | - | chr3_3:68736702-68736721 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr3_3:68736707-68736726 | None:intergenic | 50.0% |
| ACTTCTACAGGTGTTCCACC+CGG | + | chr3_3:68736825-68736844 | Msa0467450:intron | 50.0% | |
| !!! | TGCATCACTGCTGTTTTCCC+GGG | - | chr3_3:68736846-68736865 | None:intergenic | 50.0% |
| !!! | CTGCATCACTGCTGTTTTCC+CGG | - | chr3_3:68736847-68736866 | None:intergenic | 50.0% |
| GATTGGCGGTGATGCTTCTA+AGG | + | chr3_3:68737099-68737118 | Msa0467450:CDS | 50.0% | |
| TAGGTGGAGGTCCGAATAAG+TGG | + | chr3_3:68737188-68737207 | Msa0467450:CDS | 50.0% | |
| AGGTGGAGGTCCGAATAAGT+GGG | + | chr3_3:68737189-68737208 | Msa0467450:CDS | 50.0% | |
| TATGCCCTTCCAAAACTGGC+TGG | + | chr3_3:68737354-68737373 | Msa0467450:intron | 50.0% | |
| ! | GCAGGTTTGGGACATTGAAG+TGG | - | chr3_3:68737398-68737417 | None:intergenic | 50.0% |
| CTGTCTCCCCACTAAACGAA+TGG | + | chr3_3:68737496-68737515 | Msa0467450:intron | 50.0% | |
| !!! | TTTTCTTTGGCCTTGCGGAG+AGG | + | chr3_3:68738570-68738589 | Msa0467450:intron | 50.0% |
| TCACATTTGTCCTCTCCGCA+AGG | - | chr3_3:68738583-68738602 | None:intergenic | 50.0% | |
| TGCGGAGAGGACAAATGTGA+AGG | + | chr3_3:68738583-68738602 | Msa0467450:intron | 50.0% | |
| !! | GTAGAGGGCATCAAGTGCAA+GGG | - | chr3_3:68739005-68739024 | None:intergenic | 50.0% |
| TGGGCAGCAGTAATGGTAGA+GGG | - | chr3_3:68739020-68739039 | None:intergenic | 50.0% | |
| ATGGGCAGCAGTAATGGTAG+AGG | - | chr3_3:68739021-68739040 | None:intergenic | 50.0% | |
| AGATGCATGGGCAGCAGTAA+TGG | - | chr3_3:68739027-68739046 | None:intergenic | 50.0% | |
| TAATGGCAACAGAGTGGCAG+TGG | - | chr3_3:68739054-68739073 | None:intergenic | 50.0% | |
| TGGTGAAAGGTGGTCAGTGA+CGG | - | chr3_3:68739098-68739117 | None:intergenic | 50.0% | |
| TGTTGGGTGGCAATGGTGAA+AGG | - | chr3_3:68739111-68739130 | None:intergenic | 50.0% | |
| !! | TGATGATGGAGAGTGTTGGG+TGG | - | chr3_3:68739124-68739143 | None:intergenic | 50.0% |
| !! | GCGATGATGATGGAGAGTGT+TGG | - | chr3_3:68739128-68739147 | None:intergenic | 50.0% |
| TAAAGATCTCCCAGATGCCC+AGG | + | chr3_3:68739487-68739506 | Msa0467450:CDS | 50.0% | |
| AGGCGATGGAAAAAGGGAGG+AGG | + | chr3_3:68734773-68734792 | Msa0467450:CDS | 55.0% | |
| GGAAAAAGGGAGGAGGAGCT+TGG | + | chr3_3:68734780-68734799 | Msa0467450:CDS | 55.0% | |
| AGGAGGAGCTTGGTTTCGAG+CGG | + | chr3_3:68734790-68734809 | Msa0467450:CDS | 55.0% | |
| CTCGCATTCGCACACGAATG+AGG | - | chr3_3:68734820-68734839 | None:intergenic | 55.0% | |
| CGAATGCGAGCCTTTATCCC+AGG | + | chr3_3:68734830-68734849 | Msa0467450:CDS | 55.0% | |
| TGAGCGATGTGGGTAAGCGA+CGG | - | chr3_3:68734953-68734972 | None:intergenic | 55.0% | |
| AAGGAAGTGGGACCTGGAGA+AGG | - | chr3_3:68735011-68735030 | None:intergenic | 55.0% | |
| AGAGGAAAGGAAGTGGGACC+TGG | - | chr3_3:68735017-68735036 | None:intergenic | 55.0% | |
| TGGGGGAGAGGAAAGGAAGT+GGG | - | chr3_3:68735023-68735042 | None:intergenic | 55.0% | |
| GTTTGCGAGTTTGGAGGGGA+AGG | + | chr3_3:68736348-68736367 | Msa0467450:intron | 55.0% | |
| ! | GGGAAGGGAGGGGAAAGTTT+TGG | + | chr3_3:68736364-68736383 | Msa0467450:intron | 55.0% |
| !! | GTATTGGGGGAGGGTTTTGG+AGG | + | chr3_3:68736497-68736516 | Msa0467450:intron | 55.0% |
| !! | AAGGAAGGAAGGGCTTTGGG+GGG | - | chr3_3:68736677-68736696 | None:intergenic | 55.0% |
| ! | GAAGGAAGGAAGGGCTTTGG+GGG | - | chr3_3:68736678-68736697 | None:intergenic | 55.0% |
| GGAAGGAAGGAAGGGCTTTG+GGG | - | chr3_3:68736679-68736698 | None:intergenic | 55.0% | |
| GGGAAGGAAGGAAGGGCTTT+GGG | - | chr3_3:68736680-68736699 | None:intergenic | 55.0% | |
| AGGGAAGGGGAAGGAAGGAA+GGG | - | chr3_3:68736687-68736706 | None:intergenic | 55.0% | |
| TTTGGAGGGAAGGGGAAGGA+AGG | - | chr3_3:68736692-68736711 | None:intergenic | 55.0% | |
| CTTCTACAGGTGTTCCACCC+GGG | + | chr3_3:68736826-68736845 | Msa0467450:intron | 55.0% | |
| !!! | ATCACTGCTGTTTTCCCGGG+TGG | - | chr3_3:68736843-68736862 | None:intergenic | 55.0% |
| TACAAGGTTGGAGCGGGGAT+TGG | + | chr3_3:68737082-68737101 | Msa0467450:intron | 55.0% | |
| GGTGGAGGTCCGAATAAGTG+GGG | + | chr3_3:68737190-68737209 | Msa0467450:CDS | 55.0% | |
| AAGTGCAAGGGTGGAAGGCA+GGG | - | chr3_3:68738993-68739012 | None:intergenic | 55.0% | |
| GCATCAAGTGCAAGGGTGGA+AGG | - | chr3_3:68738998-68739017 | None:intergenic | 55.0% | |
| !! | GGTAGAGGGCATCAAGTGCA+AGG | - | chr3_3:68739006-68739025 | None:intergenic | 55.0% |
| ! | GGCAGTGGTGGAAGATGCAT+GGG | - | chr3_3:68739039-68739058 | None:intergenic | 55.0% |
| ! | TGGCAGTGGTGGAAGATGCA+TGG | - | chr3_3:68739040-68739059 | None:intergenic | 55.0% |
| TGGGTGGCAATGGTGAAAGG+TGG | - | chr3_3:68739108-68739127 | None:intergenic | 55.0% | |
| !! | TGGAGAGTGTTGGGTGGCAA+TGG | - | chr3_3:68739118-68739137 | None:intergenic | 55.0% |
| CAGGGTGACAGCGATGATGA+TGG | - | chr3_3:68739138-68739157 | None:intergenic | 55.0% | |
| ! | TGGAGGATGGCGGTGATGAA+GGG | - | chr3_3:68739163-68739182 | None:intergenic | 55.0% |
| ! | ATGGAGGATGGCGGTGATGA+AGG | - | chr3_3:68739164-68739183 | None:intergenic | 55.0% |
| GTGGGGGAGAGGAAAGGAAG+TGG | - | chr3_3:68735024-68735043 | None:intergenic | 60.0% | |
| CGAGTTTGGAGGGGAAGGGA+GGG | + | chr3_3:68736353-68736372 | Msa0467450:intron | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | + | chr3_3:68736354-68736373 | Msa0467450:intron | 60.0% | |
| ACATTGGGAGGGGAGGGCTT+TGG | + | chr3_3:68736416-68736435 | Msa0467450:intron | 60.0% | |
| CATTGGGAGGGGAGGGCTTT+GGG | + | chr3_3:68736417-68736436 | Msa0467450:intron | 60.0% | |
| ATTGGGAGGGGAGGGCTTTG+GGG | + | chr3_3:68736418-68736437 | Msa0467450:intron | 60.0% | |
| GGGGAAGGAAGGAAGGGCTT+TGG | - | chr3_3:68736681-68736700 | None:intergenic | 60.0% | |
| GAGGGAAGGGGAAGGAAGGA+AGG | - | chr3_3:68736688-68736707 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGAAGGGGA+AGG | - | chr3_3:68736696-68736715 | None:intergenic | 60.0% | |
| AAGGTTGGAGCGGGGATTGG+CGG | + | chr3_3:68737085-68737104 | Msa0467450:intron | 60.0% | |
| AAGGCAGGGAAGGGAGGAAG+AGG | - | chr3_3:68738979-68738998 | None:intergenic | 60.0% | |
| CAAGGGTGGAAGGCAGGGAA+GGG | - | chr3_3:68738988-68739007 | None:intergenic | 60.0% | |
| CAAGTGCAAGGGTGGAAGGC+AGG | - | chr3_3:68738994-68739013 | None:intergenic | 60.0% | |
| !! | GAGGGCATCAAGTGCAAGGG+TGG | - | chr3_3:68739002-68739021 | None:intergenic | 60.0% |
| TGGCAACAGAGTGGCAGTGG+TGG | - | chr3_3:68739051-68739070 | None:intergenic | 60.0% | |
| GTGGTCAGTGACGGCAGTCA+TGG | - | chr3_3:68739089-68739108 | None:intergenic | 60.0% | |
| ! | TGGCGGTGATGAAGGGTGCA+GGG | - | chr3_3:68739156-68739175 | None:intergenic | 60.0% |
| ! | ATGGCGGTGATGAAGGGTGC+AGG | - | chr3_3:68739157-68739176 | None:intergenic | 60.0% |
| CGGCAACTTCCTGGGCATCT+GGG | - | chr3_3:68739499-68739518 | None:intergenic | 60.0% | |
| TCGGCAACTTCCTGGGCATC+TGG | - | chr3_3:68739500-68739519 | None:intergenic | 60.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | + | chr3_3:68736352-68736371 | Msa0467450:intron | 65.0% | |
| ! | TTGGGAGGGGAGGGCTTTGG+GGG | + | chr3_3:68736419-68736438 | Msa0467450:intron | 65.0% |
| !! | GAAGGAAGGGCTTTGGGGGG+TGG | - | chr3_3:68736674-68736693 | None:intergenic | 65.0% |
| GCAAGGGTGGAAGGCAGGGA+AGG | - | chr3_3:68738989-68739008 | None:intergenic | 65.0% | |
| GTAAGCGACGGCCGCTGCTG+CGG | - | chr3_3:68734941-68734960 | None:intergenic | 70.0% | |
| !! | TGGGAGGGGAGGGCTTTGGG+GGG | + | chr3_3:68736420-68736439 | Msa0467450:intron | 70.0% |
| GGGTGGAAGGCAGGGAAGGG+AGG | - | chr3_3:68738985-68739004 | None:intergenic | 70.0% | |
| TCTCCCCCTCGCCGCAGCAG+CGG | + | chr3_3:68734927-68734946 | Msa0467450:CDS | 75.0% | |
| !! | GGGAGGGGAGGGCTTTGGGG+GGG | + | chr3_3:68736421-68736440 | Msa0467450:intron | 75.0% |
| ! | ACGGCCGCTGCTGCGGCGAG+GGG | - | chr3_3:68734934-68734953 | None:intergenic | 80.0% |
| ! | GACGGCCGCTGCTGCGGCGA+GGG | - | chr3_3:68734935-68734954 | None:intergenic | 80.0% |
| ! | CGGCCGCTGCTGCGGCGAGG+GGG | - | chr3_3:68734933-68734952 | None:intergenic | 85.0% |
| ! | CGACGGCCGCTGCTGCGGCG+AGG | - | chr3_3:68734936-68734955 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 68734751 | 68739738 | 68734751 | ID=Msa0467450;Name=Msa0467450 |
| chr3_3 | mRNA | 68734751 | 68739738 | 68734751 | ID=Msa0467450-mRNA-1;Parent=Msa0467450;Name=Msa0467450-mRNA-1;_AED=0.05;_eAED=0.05;_QI=11|1|1|1|1|1|6|182|304 |
| chr3_3 | exon | 68734751 | 68735017 | 68734751 | ID=Msa0467450-mRNA-1:exon:16009;Parent=Msa0467450-mRNA-1 |
| chr3_3 | exon | 68735669 | 68735848 | 68735669 | ID=Msa0467450-mRNA-1:exon:16010;Parent=Msa0467450-mRNA-1 |
| chr3_3 | exon | 68736835 | 68736965 | 68736835 | ID=Msa0467450-mRNA-1:exon:16011;Parent=Msa0467450-mRNA-1 |
| chr3_3 | exon | 68737088 | 68737249 | 68737088 | ID=Msa0467450-mRNA-1:exon:16012;Parent=Msa0467450-mRNA-1 |
| chr3_3 | exon | 68738691 | 68738801 | 68738691 | ID=Msa0467450-mRNA-1:exon:16013;Parent=Msa0467450-mRNA-1 |
| chr3_3 | exon | 68739482 | 68739738 | 68739482 | ID=Msa0467450-mRNA-1:exon:16014;Parent=Msa0467450-mRNA-1 |
| chr3_3 | five_prime_UTR | 68734751 | 68734761 | 68734751 | ID=Msa0467450-mRNA-1:five_prime_utr;Parent=Msa0467450-mRNA-1 |
| chr3_3 | CDS | 68734762 | 68735017 | 68734762 | ID=Msa0467450-mRNA-1:cds;Parent=Msa0467450-mRNA-1 |
| chr3_3 | CDS | 68735669 | 68735848 | 68735669 | ID=Msa0467450-mRNA-1:cds;Parent=Msa0467450-mRNA-1 |
| chr3_3 | CDS | 68736835 | 68736965 | 68736835 | ID=Msa0467450-mRNA-1:cds;Parent=Msa0467450-mRNA-1 |
| chr3_3 | CDS | 68737088 | 68737249 | 68737088 | ID=Msa0467450-mRNA-1:cds;Parent=Msa0467450-mRNA-1 |
| chr3_3 | CDS | 68738691 | 68738801 | 68738691 | ID=Msa0467450-mRNA-1:cds;Parent=Msa0467450-mRNA-1 |
| chr3_3 | CDS | 68739482 | 68739556 | 68739482 | ID=Msa0467450-mRNA-1:cds;Parent=Msa0467450-mRNA-1 |
| chr3_3 | three_prime_UTR | 68739557 | 68739738 | 68739557 | ID=Msa0467450-mRNA-1:three_prime_utr;Parent=Msa0467450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
