AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0281530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281530 MtrunA17_Chr2g0295871 98.204 167 3 0 1 167 1 167 4.18e-118 330
Msa0281530 MtrunA17_Chr6g0479151 87.500 160 20 0 1 160 1 160 8.56e-99 281
Msa0281530 MtrunA17_Chr1g0192201 83.333 168 27 1 1 167 1 168 1.45e-94 271
Msa0281530 MtrunA17_Chr1g0192171 82.738 168 28 1 1 167 1 168 6.65e-94 269
Msa0281530 MtrunA17_Chr1g0192161 67.442 129 41 1 19 146 9 137 6.02e-51 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0281530 AT3G16640.1 75.595 168 40 1 1 167 1 168 9.90e-92 264
Msa0281530 AT3G05540.1 79.167 168 34 1 1 167 1 168 3.23e-87 253

Find 69 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAACCTGATTAAATTTAA+TGG 0.163949 2_3:+17005203 None:intergenic
TGGAAATATGAGAGGTATAA+AGG 0.266222 2_3:-17007319 Msa0281530:five_prime_UTR
TTTGACAAGAAGCAGTTTCT+TGG 0.278246 2_3:-17005829 Msa0281530:CDS
TTGTTTCTCTGCATCTAGTT+TGG 0.281317 2_3:+17005774 None:intergenic
CCATTCTCAATTTCCTTGTA+TGG 0.282615 2_3:+17006223 None:intergenic
CTACTTTGCTTATGCTTTGA+AGG 0.304287 2_3:-17005377 Msa0281530:CDS
CCAACCTGATTAAATTTAAT+GGG 0.313635 2_3:+17005204 None:intergenic
TGTTTCTCTGCATCTAGTTT+GGG 0.318203 2_3:+17005775 None:intergenic
CATTCCCATTAAATTTAATC+AGG 0.326772 2_3:-17005208 Msa0281530:three_prime_UTR
GAGCTTGCCGAGCAAGTATT+TGG 0.326857 2_3:+17005720 None:intergenic
GTGTACTTTATTTATATCCT+AGG 0.357322 2_3:+17007278 None:intergenic
GTTTACCAGGATCTCCTTAC+CGG 0.366225 2_3:-17007137 Msa0281530:intron
TGGAATGTTGTGGGAGGTTG+AGG 0.377236 2_3:-17006203 Msa0281530:CDS
TGGTGTGCAGTGGGTTACTA+AGG 0.380033 2_3:-17006090 Msa0281530:intron
CATAAGGAATGTCAGTTGTC+TGG 0.382147 2_3:-17005146 Msa0281530:three_prime_UTR
GAATTCTTGTGCAGCTTTGT+TGG 0.382904 2_3:-17005472 Msa0281530:intron
TGTTGACGTATTCAGACTTC+AGG 0.392904 2_3:-17005976 Msa0281530:intron
ATTGAAGAGTTAACTGTCTC+TGG 0.397853 2_3:+17007167 None:intergenic
AGTTTCTTGGCTTTGTTAAG+AGG 0.407714 2_3:-17005816 Msa0281530:CDS
TTCAATCATGTTGGTTTACC+AGG 0.411320 2_3:-17007150 Msa0281530:exon
CCCATTAAATTTAATCAGGT+TGG 0.415483 2_3:-17005204 Msa0281530:three_prime_UTR
AACTGCTTCTTGTCAAAAGC+AGG 0.440893 2_3:+17005835 None:intergenic
CGAGAGTTGAGACTATGATT+TGG 0.445273 2_3:-17005269 Msa0281530:three_prime_UTR
TGTTGATGACACAGCTGTTA+AGG 0.453047 2_3:-17006009 Msa0281530:CDS
CATTCTCAATTTCCTTGTAT+GGG 0.457372 2_3:+17006224 None:intergenic
AACTGTCTCTGGATCGCTCC+TGG 0.460431 2_3:+17007178 None:intergenic
TGTACTTTATTTATATCCTA+GGG 0.469434 2_3:+17007279 None:intergenic
ATCAACCCCTCTTCACTCTC+AGG 0.472927 2_3:-17007246 Msa0281530:five_prime_UTR
TAAGCAAAGTAGAGAAATGT+TGG 0.475842 2_3:+17005388 None:intergenic
AGAGGTTCACTTACAATTGA+AGG 0.484964 2_3:+17005692 None:intergenic
ATTTACCGGTAAGGAGATCC+TGG 0.491049 2_3:+17007132 None:intergenic
CTGTTTAAGAAGCACATTGA+GGG 0.491843 2_3:-17005748 Msa0281530:CDS
GTTGTGGGAGGTTGAGGGAA+AGG 0.495448 2_3:-17006197 Msa0281530:intron
CCATACAAGGAAATTGAGAA+TGG 0.509500 2_3:-17006223 Msa0281530:CDS
TGCTGAAGGTGGGGAAGATG+AGG 0.510874 2_3:-17006033 Msa0281530:CDS
GGTGTGCAGTGGGTTACTAA+GGG 0.531247 2_3:-17006089 Msa0281530:intron
CACGAACTCACTTTGCAACC+AGG 0.535097 2_3:-17007196 Msa0281530:five_prime_UTR
GGGCAGTGTAGAACTGTTGT+GGG 0.540841 2_3:+17005067 None:intergenic
AGGGCAGTGTAGAACTGTTG+TGG 0.541721 2_3:+17005066 None:intergenic
CTTGGTCTTCGCCTACTACA+AGG 0.543755 2_3:-17005425 Msa0281530:CDS
AGAAGTTAGATTTACCGGTA+AGG 0.548047 2_3:+17007123 None:intergenic
AGTTAACTCTTCAATCATGT+TGG 0.548862 2_3:-17007159 Msa0281530:exon
GGTGCTAACGCTTCTGCTGA+AGG 0.551924 2_3:-17006047 Msa0281530:CDS
GTCAGACTCTTACCCATACA+AGG 0.558314 2_3:-17006236 Msa0281530:CDS
AGCAGCACCATCCTTGTAGT+AGG 0.558714 2_3:+17005414 None:intergenic
GAGCGACCTGAGAGTGAAGA+GGG 0.563744 2_3:+17007240 None:intergenic
CTAACGCTTCTGCTGAAGGT+GGG 0.564433 2_3:-17006043 Msa0281530:CDS
GGAATGTTGTGGGAGGTTGA+GGG 0.570757 2_3:-17006202 Msa0281530:CDS
GTTCGTGCGGTGAAACAACA+AGG 0.571140 2_3:+17007212 None:intergenic
GCTAACGCTTCTGCTGAAGG+TGG 0.574811 2_3:-17006044 Msa0281530:CDS
CATGCATGATGATGGTAGCT+TGG 0.577740 2_3:-17005443 Msa0281530:CDS
ATACTTGCTCGGCAAGCTCA+AGG 0.590353 2_3:-17005716 Msa0281530:CDS
TAACGCTTCTGCTGAAGGTG+GGG 0.592268 2_3:-17006042 Msa0281530:CDS
AATTGAGAATGGAATGTTGT+GGG 0.596224 2_3:-17006212 Msa0281530:CDS
GGAGCAACCAAATACTTGCT+CGG 0.601945 2_3:-17005727 Msa0281530:CDS
GCTGTTTAAGAAGCACATTG+AGG 0.605157 2_3:-17005749 Msa0281530:CDS
GTCTTCGCCTACTACAAGGA+TGG 0.605413 2_3:-17005421 Msa0281530:CDS
GGAGTTGTTGAAGTAGACAT+TGG 0.611147 2_3:-17006068 Msa0281530:CDS
GGTGAGAGCATGCATGATGA+TGG 0.613806 2_3:-17005451 Msa0281530:CDS
GCTGAAGGTGGGGAAGATGA+GGG 0.626588 2_3:-17006032 Msa0281530:CDS
ACATGTCGTGCATAGAAGAG+TGG 0.632986 2_3:+17005014 None:intergenic
GCGGTGAAACAACAAGGGTA+CGG 0.639411 2_3:+17007218 None:intergenic
GGAGCGACCTGAGAGTGAAG+AGG 0.646314 2_3:+17007239 None:intergenic
TGAGAATGGAATGTTGTGGG+AGG 0.663472 2_3:-17006209 Msa0281530:CDS
GGTTGCAAAGTGAGTTCGTG+CGG 0.700992 2_3:+17007199 None:intergenic
AATTTGAAAGAAGAAACCCT+AGG 0.704412 2_3:-17007295 Msa0281530:five_prime_UTR
AGCGACCTGAGAGTGAAGAG+GGG 0.713708 2_3:+17007241 None:intergenic
AAATTGAGAATGGAATGTTG+TGG 0.718062 2_3:-17006213 Msa0281530:CDS
TTCGTGCGGTGAAACAACAA+GGG 0.729258 2_3:+17007213 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATCTAATAATAAAAAAAG+CGG + chr2_3:17005264-17005283 None:intergenic 15.0%
!!! TTGTTGTTATTTTAATTCAT+TGG - chr2_3:17005330-17005349 Msa0281530:three_prime_UTR 15.0%
!! TTTCAAAAAATACTATATCT+GGG + chr2_3:17005435-17005454 None:intergenic 15.0%
!!! TTTTCAAAAAATACTATATC+TGG + chr2_3:17005436-17005455 None:intergenic 15.0%
!! ATATAAAACAATATAACAGA+GGG + chr2_3:17005602-17005621 None:intergenic 15.0%
!! AATATAAAACAATATAACAG+AGG + chr2_3:17005603-17005622 None:intergenic 15.0%
!!! ATATCAATAAGTTCAAATTT+TGG - chr2_3:17005639-17005658 Msa0281530:intron 15.0%
!!! TTTTTGTTTGAAATATGTTA+TGG - chr2_3:17006014-17006033 Msa0281530:CDS 15.0%
!! AACAAAAACATGATAAATTA+GGG + chr2_3:17007025-17007044 None:intergenic 15.0%
!! AGATCTAATAATAAAAAAAG+CGG + chr2_3:17005264-17005283 None:intergenic 15.0%
!!! TTGTTGTTATTTTAATTCAT+TGG - chr2_3:17005330-17005349 Msa0281530:three_prime_UTR 15.0%
!! TTTCAAAAAATACTATATCT+GGG + chr2_3:17005435-17005454 None:intergenic 15.0%
!!! TTTTCAAAAAATACTATATC+TGG + chr2_3:17005436-17005455 None:intergenic 15.0%
!! ATATAAAACAATATAACAGA+GGG + chr2_3:17005602-17005621 None:intergenic 15.0%
!! AATATAAAACAATATAACAG+AGG + chr2_3:17005603-17005622 None:intergenic 15.0%
!!! ATATCAATAAGTTCAAATTT+TGG - chr2_3:17005639-17005658 Msa0281530:intron 15.0%
!!! TTTTTGTTTGAAATATGTTA+TGG - chr2_3:17006014-17006033 Msa0281530:CDS 15.0%
!! AACAAAAACATGATAAATTA+GGG + chr2_3:17007025-17007044 None:intergenic 15.0%
!!! TGTACTTTATTTATATCCTA+GGG + chr2_3:17005060-17005079 None:intergenic 20.0%
!! CAATAAGTAAAAGTCATAAT+TGG + chr2_3:17005302-17005321 None:intergenic 20.0%
!!! TTATTTTAATTCATTGGATC+TGG - chr2_3:17005336-17005355 Msa0281530:three_prime_UTR 20.0%
!!! GGTTTCTAGATTTTAAAAAT+CGG + chr2_3:17005502-17005521 None:intergenic 20.0%
!! AATTAAAAATGTATCATCCA+AGG + chr2_3:17006413-17006432 None:intergenic 20.0%
!!! TGATTGTAATATTTGTCTTT+TGG - chr2_3:17006808-17006827 Msa0281530:intron 20.0%
!! ACAAAAACATGATAAATTAG+GGG + chr2_3:17007024-17007043 None:intergenic 20.0%
!! GAACAAAAACATGATAAATT+AGG + chr2_3:17007026-17007045 None:intergenic 20.0%
!!! TGTACTTTATTTATATCCTA+GGG + chr2_3:17005060-17005079 None:intergenic 20.0%
!! CAATAAGTAAAAGTCATAAT+TGG + chr2_3:17005302-17005321 None:intergenic 20.0%
!!! TTATTTTAATTCATTGGATC+TGG - chr2_3:17005336-17005355 Msa0281530:three_prime_UTR 20.0%
!!! GGTTTCTAGATTTTAAAAAT+CGG + chr2_3:17005502-17005521 None:intergenic 20.0%
!! AATTAAAAATGTATCATCCA+AGG + chr2_3:17006413-17006432 None:intergenic 20.0%
!!! TGATTGTAATATTTGTCTTT+TGG - chr2_3:17006808-17006827 Msa0281530:intron 20.0%
!! ACAAAAACATGATAAATTAG+GGG + chr2_3:17007024-17007043 None:intergenic 20.0%
!! GAACAAAAACATGATAAATT+AGG + chr2_3:17007026-17007045 None:intergenic 20.0%
!! GTGTACTTTATTTATATCCT+AGG + chr2_3:17005061-17005080 None:intergenic 25.0%
! TGCTGCACAAATAAAAATAA+TGG + chr2_3:17005523-17005542 None:intergenic 25.0%
!! TTGAGGGAATTTTATGATTA+CGG - chr2_3:17005668-17005687 Msa0281530:intron 25.0%
!!! TTCTGAATTAGTTCTAATAG+AGG - chr2_3:17005726-17005745 Msa0281530:CDS 25.0%
!!! TCTGAATTAGTTCTAATAGA+GGG - chr2_3:17005727-17005746 Msa0281530:CDS 25.0%
!! AAATCTAAGATCTGACTATT+GGG + chr2_3:17005872-17005891 None:intergenic 25.0%
!! TGTTTGAAATATGTTATGGT+TGG - chr2_3:17006018-17006037 Msa0281530:CDS 25.0%
!! CGATACATATCATATTTTGT+AGG - chr2_3:17006065-17006084 Msa0281530:CDS 25.0%
!! AGCTAAAAACTATTTGCTTT+TGG - chr2_3:17006226-17006245 Msa0281530:CDS 25.0%
!!! TTTTGTTGTGTTGACTTTAT+AGG - chr2_3:17006473-17006492 Msa0281530:intron 25.0%
! CATTCCCATTAAATTTAATC+AGG - chr2_3:17007128-17007147 Msa0281530:intron 25.0%
! CCAACCTGATTAAATTTAAT+GGG + chr2_3:17007135-17007154 None:intergenic 25.0%
! TCCAACCTGATTAAATTTAA+TGG + chr2_3:17007136-17007155 None:intergenic 25.0%
!! GATTTTTCTTGTGTTTCATA+AGG - chr2_3:17007174-17007193 Msa0281530:five_prime_UTR 25.0%
!!! AAAGCACTTTTAAATACAGA+GGG + chr2_3:17007292-17007311 None:intergenic 25.0%
!!! AAAAGCACTTTTAAATACAG+AGG + chr2_3:17007293-17007312 None:intergenic 25.0%
!! GTGTACTTTATTTATATCCT+AGG + chr2_3:17005061-17005080 None:intergenic 25.0%
! TGCTGCACAAATAAAAATAA+TGG + chr2_3:17005523-17005542 None:intergenic 25.0%
!! TTGAGGGAATTTTATGATTA+CGG - chr2_3:17005668-17005687 Msa0281530:intron 25.0%
!!! TTCTGAATTAGTTCTAATAG+AGG - chr2_3:17005726-17005745 Msa0281530:CDS 25.0%
!!! TCTGAATTAGTTCTAATAGA+GGG - chr2_3:17005727-17005746 Msa0281530:CDS 25.0%
!! AAATCTAAGATCTGACTATT+GGG + chr2_3:17005872-17005891 None:intergenic 25.0%
!! TGTTTGAAATATGTTATGGT+TGG - chr2_3:17006018-17006037 Msa0281530:CDS 25.0%
!! CGATACATATCATATTTTGT+AGG - chr2_3:17006065-17006084 Msa0281530:CDS 25.0%
!! AGCTAAAAACTATTTGCTTT+TGG - chr2_3:17006226-17006245 Msa0281530:CDS 25.0%
!!! TTTTGTTGTGTTGACTTTAT+AGG - chr2_3:17006473-17006492 Msa0281530:intron 25.0%
! CATTCCCATTAAATTTAATC+AGG - chr2_3:17007128-17007147 Msa0281530:intron 25.0%
! CCAACCTGATTAAATTTAAT+GGG + chr2_3:17007135-17007154 None:intergenic 25.0%
! TCCAACCTGATTAAATTTAA+TGG + chr2_3:17007136-17007155 None:intergenic 25.0%
!! GATTTTTCTTGTGTTTCATA+AGG - chr2_3:17007174-17007193 Msa0281530:five_prime_UTR 25.0%
!!! AAAGCACTTTTAAATACAGA+GGG + chr2_3:17007292-17007311 None:intergenic 25.0%
!!! AAAAGCACTTTTAAATACAG+AGG + chr2_3:17007293-17007312 None:intergenic 25.0%
!! GGAATTTTTGGAAATATGAG+AGG - chr2_3:17005009-17005028 Msa0281530:three_prime_UTR 30.0%
! TGGAAATATGAGAGGTATAA+AGG - chr2_3:17005017-17005036 Msa0281530:three_prime_UTR 30.0%
AATTTGAAAGAAGAAACCCT+AGG - chr2_3:17005041-17005060 Msa0281530:three_prime_UTR 30.0%
AGTTAACTCTTCAATCATGT+TGG - chr2_3:17005177-17005196 Msa0281530:three_prime_UTR 30.0%
ATGAGAGAAGTTAGATTTAC+CGG + chr2_3:17005221-17005240 None:intergenic 30.0%
!! TTTTATTTGTGCAGCATAGT+AGG - chr2_3:17005527-17005546 Msa0281530:intron 30.0%
! TCAAATTTTGGATGAGATTG+AGG - chr2_3:17005651-17005670 Msa0281530:intron 30.0%
! CAAATTTTGGATGAGATTGA+GGG - chr2_3:17005652-17005671 Msa0281530:intron 30.0%
GTTCTAATAGAGGGATAATT+CGG - chr2_3:17005736-17005755 Msa0281530:CDS 30.0%
TTCTAATAGAGGGATAATTC+GGG - chr2_3:17005737-17005756 Msa0281530:CDS 30.0%
ACTGCATCATATTAACAAAC+AGG + chr2_3:17005774-17005793 None:intergenic 30.0%
! TGTTTGTTAATATGATGCAG+TGG - chr2_3:17005773-17005792 Msa0281530:CDS 30.0%
! CAAATCTAAGATCTGACTAT+TGG + chr2_3:17005873-17005892 None:intergenic 30.0%
CATTCTCAATTTCCTTGTAT+GGG + chr2_3:17006115-17006134 None:intergenic 30.0%
AAATTGAGAATGGAATGTTG+TGG - chr2_3:17006123-17006142 Msa0281530:intron 30.0%
AATTGAGAATGGAATGTTGT+GGG - chr2_3:17006124-17006143 Msa0281530:intron 30.0%
TATCATCCAAGGATATAAAG+AGG + chr2_3:17006402-17006421 None:intergenic 30.0%
!! AATTACACTCTGAAATCAAG+TGG + chr2_3:17006452-17006471 None:intergenic 30.0%
TAAGCAAAGTAGAGAAATGT+TGG + chr2_3:17006951-17006970 None:intergenic 30.0%
CCCATTAAATTTAATCAGGT+TGG - chr2_3:17007132-17007151 Msa0281530:intron 30.0%
!! GGAATTTTTGGAAATATGAG+AGG - chr2_3:17005009-17005028 Msa0281530:three_prime_UTR 30.0%
! TGGAAATATGAGAGGTATAA+AGG - chr2_3:17005017-17005036 Msa0281530:three_prime_UTR 30.0%
AATTTGAAAGAAGAAACCCT+AGG - chr2_3:17005041-17005060 Msa0281530:three_prime_UTR 30.0%
AGTTAACTCTTCAATCATGT+TGG - chr2_3:17005177-17005196 Msa0281530:three_prime_UTR 30.0%
ATGAGAGAAGTTAGATTTAC+CGG + chr2_3:17005221-17005240 None:intergenic 30.0%
!! TTTTATTTGTGCAGCATAGT+AGG - chr2_3:17005527-17005546 Msa0281530:intron 30.0%
! TCAAATTTTGGATGAGATTG+AGG - chr2_3:17005651-17005670 Msa0281530:intron 30.0%
! CAAATTTTGGATGAGATTGA+GGG - chr2_3:17005652-17005671 Msa0281530:intron 30.0%
GTTCTAATAGAGGGATAATT+CGG - chr2_3:17005736-17005755 Msa0281530:CDS 30.0%
TTCTAATAGAGGGATAATTC+GGG - chr2_3:17005737-17005756 Msa0281530:CDS 30.0%
ACTGCATCATATTAACAAAC+AGG + chr2_3:17005774-17005793 None:intergenic 30.0%
! TGTTTGTTAATATGATGCAG+TGG - chr2_3:17005773-17005792 Msa0281530:CDS 30.0%
! CAAATCTAAGATCTGACTAT+TGG + chr2_3:17005873-17005892 None:intergenic 30.0%
CATTCTCAATTTCCTTGTAT+GGG + chr2_3:17006115-17006134 None:intergenic 30.0%
AAATTGAGAATGGAATGTTG+TGG - chr2_3:17006123-17006142 Msa0281530:intron 30.0%
AATTGAGAATGGAATGTTGT+GGG - chr2_3:17006124-17006143 Msa0281530:intron 30.0%
TATCATCCAAGGATATAAAG+AGG + chr2_3:17006402-17006421 None:intergenic 30.0%
!! AATTACACTCTGAAATCAAG+TGG + chr2_3:17006452-17006471 None:intergenic 30.0%
TAAGCAAAGTAGAGAAATGT+TGG + chr2_3:17006951-17006970 None:intergenic 30.0%
CCCATTAAATTTAATCAGGT+TGG - chr2_3:17007132-17007151 Msa0281530:intron 30.0%
ATTGAAGAGTTAACTGTCTC+TGG + chr2_3:17005172-17005191 None:intergenic 35.0%
!! TTCAATCATGTTGGTTTACC+AGG - chr2_3:17005186-17005205 Msa0281530:three_prime_UTR 35.0%
AGAAGTTAGATTTACCGGTA+AGG + chr2_3:17005216-17005235 None:intergenic 35.0%
! CATATTCTGATTTTCTGTGC+TGG - chr2_3:17005400-17005419 Msa0281530:CDS 35.0%
TAACCAATAAAACAGAGCAC+AGG + chr2_3:17005577-17005596 None:intergenic 35.0%
TCTAATAGAGGGATAATTCG+GGG - chr2_3:17005738-17005757 Msa0281530:CDS 35.0%
TCGAACCATAGGATTAAGAT+CGG - chr2_3:17005810-17005829 Msa0281530:CDS 35.0%
ATATGTTATGGTTGGATGCT+TGG - chr2_3:17006026-17006045 Msa0281530:CDS 35.0%
CCATTCTCAATTTCCTTGTA+TGG + chr2_3:17006116-17006135 None:intergenic 35.0%
CCATACAAGGAAATTGAGAA+TGG - chr2_3:17006113-17006132 Msa0281530:intron 35.0%
TGACGTAGTTATGTTACACT+TGG - chr2_3:17006195-17006214 Msa0281530:intron 35.0%
GACGTAGTTATGTTACACTT+GGG - chr2_3:17006196-17006215 Msa0281530:intron 35.0%
ACGTAGTTATGTTACACTTG+GGG - chr2_3:17006197-17006216 Msa0281530:intron 35.0%
!! CAAGGATATAAAGAGGTGTT+TGG + chr2_3:17006395-17006414 None:intergenic 35.0%
CAAACACCTCTTTATATCCT+TGG - chr2_3:17006393-17006412 Msa0281530:intron 35.0%
TTTGACAAGAAGCAGTTTCT+TGG - chr2_3:17006507-17006526 Msa0281530:intron 35.0%
!! AGTTTCTTGGCTTTGTTAAG+AGG - chr2_3:17006520-17006539 Msa0281530:intron 35.0%
! TGTTTCTCTGCATCTAGTTT+GGG + chr2_3:17006564-17006583 None:intergenic 35.0%
! TTGTTTCTCTGCATCTAGTT+TGG + chr2_3:17006565-17006584 None:intergenic 35.0%
! CTGTTTAAGAAGCACATTGA+GGG - chr2_3:17006588-17006607 Msa0281530:intron 35.0%
AGAGGTTCACTTACAATTGA+AGG + chr2_3:17006647-17006666 None:intergenic 35.0%
TTCTTGAATGTGCATGATAG+AGG + chr2_3:17006665-17006684 None:intergenic 35.0%
TCTATCATGCACATTCAAGA+AGG - chr2_3:17006664-17006683 Msa0281530:intron 35.0%
CTACTTTGCTTATGCTTTGA+AGG - chr2_3:17006959-17006978 Msa0281530:intron 35.0%
ATTGAAGAGTTAACTGTCTC+TGG + chr2_3:17005172-17005191 None:intergenic 35.0%
!! TTCAATCATGTTGGTTTACC+AGG - chr2_3:17005186-17005205 Msa0281530:three_prime_UTR 35.0%
AGAAGTTAGATTTACCGGTA+AGG + chr2_3:17005216-17005235 None:intergenic 35.0%
! CATATTCTGATTTTCTGTGC+TGG - chr2_3:17005400-17005419 Msa0281530:CDS 35.0%
TAACCAATAAAACAGAGCAC+AGG + chr2_3:17005577-17005596 None:intergenic 35.0%
TCTAATAGAGGGATAATTCG+GGG - chr2_3:17005738-17005757 Msa0281530:CDS 35.0%
TCGAACCATAGGATTAAGAT+CGG - chr2_3:17005810-17005829 Msa0281530:CDS 35.0%
ATATGTTATGGTTGGATGCT+TGG - chr2_3:17006026-17006045 Msa0281530:CDS 35.0%
CCATTCTCAATTTCCTTGTA+TGG + chr2_3:17006116-17006135 None:intergenic 35.0%
CCATACAAGGAAATTGAGAA+TGG - chr2_3:17006113-17006132 Msa0281530:intron 35.0%
TGACGTAGTTATGTTACACT+TGG - chr2_3:17006195-17006214 Msa0281530:intron 35.0%
GACGTAGTTATGTTACACTT+GGG - chr2_3:17006196-17006215 Msa0281530:intron 35.0%
ACGTAGTTATGTTACACTTG+GGG - chr2_3:17006197-17006216 Msa0281530:intron 35.0%
!! CAAGGATATAAAGAGGTGTT+TGG + chr2_3:17006395-17006414 None:intergenic 35.0%
CAAACACCTCTTTATATCCT+TGG - chr2_3:17006393-17006412 Msa0281530:intron 35.0%
TTTGACAAGAAGCAGTTTCT+TGG - chr2_3:17006507-17006526 Msa0281530:intron 35.0%
!! AGTTTCTTGGCTTTGTTAAG+AGG - chr2_3:17006520-17006539 Msa0281530:intron 35.0%
! TGTTTCTCTGCATCTAGTTT+GGG + chr2_3:17006564-17006583 None:intergenic 35.0%
! TTGTTTCTCTGCATCTAGTT+TGG + chr2_3:17006565-17006584 None:intergenic 35.0%
! CTGTTTAAGAAGCACATTGA+GGG - chr2_3:17006588-17006607 Msa0281530:intron 35.0%
AGAGGTTCACTTACAATTGA+AGG + chr2_3:17006647-17006666 None:intergenic 35.0%
TTCTTGAATGTGCATGATAG+AGG + chr2_3:17006665-17006684 None:intergenic 35.0%
TCTATCATGCACATTCAAGA+AGG - chr2_3:17006664-17006683 Msa0281530:intron 35.0%
CTACTTTGCTTATGCTTTGA+AGG - chr2_3:17006959-17006978 Msa0281530:intron 35.0%
AAAGCGGAAAATTGAAGCGA+TGG + chr2_3:17005248-17005267 None:intergenic 40.0%
! TTGCCTGTGCTCTGTTTTAT+TGG - chr2_3:17005571-17005590 Msa0281530:intron 40.0%
AGTTGAGCAATTCGAACCAT+AGG - chr2_3:17005799-17005818 Msa0281530:CDS 40.0%
ACCATAGGATTAAGATCGGA+TGG - chr2_3:17005814-17005833 Msa0281530:CDS 40.0%
CGATCTCAATCCAAACGAAT+TGG - chr2_3:17005895-17005914 Msa0281530:intron 40.0%
CTCAATCCAAACGAATTGGT+TGG - chr2_3:17005899-17005918 Msa0281530:intron 40.0%
!! TATTTGCTTTTGGTGTGCAG+TGG - chr2_3:17006236-17006255 Msa0281530:CDS 40.0%
!! ATTTGCTTTTGGTGTGCAGT+GGG - chr2_3:17006237-17006256 Msa0281530:CDS 40.0%
GGAGTTGTTGAAGTAGACAT+TGG - chr2_3:17006268-17006287 Msa0281530:intron 40.0%
!! TGTTGATGACACAGCTGTTA+AGG - chr2_3:17006327-17006346 Msa0281530:intron 40.0%
TGTTGACGTATTCAGACTTC+AGG - chr2_3:17006360-17006379 Msa0281530:intron 40.0%
! ACGTATTCAGACTTCAGGTT+AGG - chr2_3:17006365-17006384 Msa0281530:intron 40.0%
AACTGCTTCTTGTCAAAAGC+AGG + chr2_3:17006504-17006523 None:intergenic 40.0%
! GCTGTTTAAGAAGCACATTG+AGG - chr2_3:17006587-17006606 Msa0281530:intron 40.0%
! GAATTCTTGTGCAGCTTTGT+TGG - chr2_3:17006864-17006883 Msa0281530:intron 40.0%
CGAGAGTTGAGACTATGATT+TGG - chr2_3:17007067-17007086 Msa0281530:intron 40.0%
CATAAGGAATGTCAGTTGTC+TGG - chr2_3:17007190-17007209 Msa0281530:five_prime_UTR 40.0%
AAAGCGGAAAATTGAAGCGA+TGG + chr2_3:17005248-17005267 None:intergenic 40.0%
! TTGCCTGTGCTCTGTTTTAT+TGG - chr2_3:17005571-17005590 Msa0281530:intron 40.0%
AGTTGAGCAATTCGAACCAT+AGG - chr2_3:17005799-17005818 Msa0281530:CDS 40.0%
ACCATAGGATTAAGATCGGA+TGG - chr2_3:17005814-17005833 Msa0281530:CDS 40.0%
CGATCTCAATCCAAACGAAT+TGG - chr2_3:17005895-17005914 Msa0281530:intron 40.0%
CTCAATCCAAACGAATTGGT+TGG - chr2_3:17005899-17005918 Msa0281530:intron 40.0%
!! TATTTGCTTTTGGTGTGCAG+TGG - chr2_3:17006236-17006255 Msa0281530:CDS 40.0%
!! ATTTGCTTTTGGTGTGCAGT+GGG - chr2_3:17006237-17006256 Msa0281530:CDS 40.0%
GGAGTTGTTGAAGTAGACAT+TGG - chr2_3:17006268-17006287 Msa0281530:intron 40.0%
!! TGTTGATGACACAGCTGTTA+AGG - chr2_3:17006327-17006346 Msa0281530:intron 40.0%
TGTTGACGTATTCAGACTTC+AGG - chr2_3:17006360-17006379 Msa0281530:intron 40.0%
! ACGTATTCAGACTTCAGGTT+AGG - chr2_3:17006365-17006384 Msa0281530:intron 40.0%
AACTGCTTCTTGTCAAAAGC+AGG + chr2_3:17006504-17006523 None:intergenic 40.0%
! GCTGTTTAAGAAGCACATTG+AGG - chr2_3:17006587-17006606 Msa0281530:intron 40.0%
! GAATTCTTGTGCAGCTTTGT+TGG - chr2_3:17006864-17006883 Msa0281530:intron 40.0%
CGAGAGTTGAGACTATGATT+TGG - chr2_3:17007067-17007086 Msa0281530:intron 40.0%
CATAAGGAATGTCAGTTGTC+TGG - chr2_3:17007190-17007209 Msa0281530:five_prime_UTR 40.0%
TTCGTGCGGTGAAACAACAA+GGG + chr2_3:17005126-17005145 None:intergenic 45.0%
GTTTACCAGGATCTCCTTAC+CGG - chr2_3:17005199-17005218 Msa0281530:three_prime_UTR 45.0%
ATTTACCGGTAAGGAGATCC+TGG + chr2_3:17005207-17005226 None:intergenic 45.0%
GCCATCCGATCTTAATCCTA+TGG + chr2_3:17005818-17005837 None:intergenic 45.0%
CTGTAGCCAACCAATTCGTT+TGG + chr2_3:17005908-17005927 None:intergenic 45.0%
! CAAACGAATTGGTTGGCTAC+AGG - chr2_3:17005906-17005925 Msa0281530:intron 45.0%
GTCAGACTCTTACCCATACA+AGG - chr2_3:17006100-17006119 Msa0281530:intron 45.0%
TGAGAATGGAATGTTGTGGG+AGG - chr2_3:17006127-17006146 Msa0281530:intron 45.0%
GGAGCAACCAAATACTTGCT+CGG - chr2_3:17006609-17006628 Msa0281530:intron 45.0%
!! CATGCATGATGATGGTAGCT+TGG - chr2_3:17006893-17006912 Msa0281530:intron 45.0%
ACATGTCGTGCATAGAAGAG+TGG + chr2_3:17007325-17007344 None:intergenic 45.0%
TCTATGCACGACATGTCTCT+TGG - chr2_3:17007329-17007348 Msa0281530:five_prime_UTR 45.0%
CTATGCACGACATGTCTCTT+GGG - chr2_3:17007330-17007349 Msa0281530:five_prime_UTR 45.0%
TATGCACGACATGTCTCTTG+GGG - chr2_3:17007331-17007350 Msa0281530:five_prime_UTR 45.0%
TTCGTGCGGTGAAACAACAA+GGG + chr2_3:17005126-17005145 None:intergenic 45.0%
GTTTACCAGGATCTCCTTAC+CGG - chr2_3:17005199-17005218 Msa0281530:three_prime_UTR 45.0%
ATTTACCGGTAAGGAGATCC+TGG + chr2_3:17005207-17005226 None:intergenic 45.0%
GCCATCCGATCTTAATCCTA+TGG + chr2_3:17005818-17005837 None:intergenic 45.0%
CTGTAGCCAACCAATTCGTT+TGG + chr2_3:17005908-17005927 None:intergenic 45.0%
! CAAACGAATTGGTTGGCTAC+AGG - chr2_3:17005906-17005925 Msa0281530:intron 45.0%
GTCAGACTCTTACCCATACA+AGG - chr2_3:17006100-17006119 Msa0281530:intron 45.0%
TGAGAATGGAATGTTGTGGG+AGG - chr2_3:17006127-17006146 Msa0281530:intron 45.0%
GGAGCAACCAAATACTTGCT+CGG - chr2_3:17006609-17006628 Msa0281530:intron 45.0%
!! CATGCATGATGATGGTAGCT+TGG - chr2_3:17006893-17006912 Msa0281530:intron 45.0%
ACATGTCGTGCATAGAAGAG+TGG + chr2_3:17007325-17007344 None:intergenic 45.0%
!! AAAAAATAAAATAAAAAACA+TGG + chr2_3:17005983-17006002 None:intergenic 5.0%
!! AAAAAATAAAATAAAAAACA+TGG + chr2_3:17005983-17006002 None:intergenic 5.0%
ATCAACCCCTCTTCACTCTC+AGG - chr2_3:17005090-17005109 Msa0281530:three_prime_UTR 50.0%
GCGGTGAAACAACAAGGGTA+CGG + chr2_3:17005121-17005140 None:intergenic 50.0%
GTTCGTGCGGTGAAACAACA+AGG + chr2_3:17005127-17005146 None:intergenic 50.0%
GGTTGCAAAGTGAGTTCGTG+CGG + chr2_3:17005140-17005159 None:intergenic 50.0%
CACGAACTCACTTTGCAACC+AGG - chr2_3:17005140-17005159 Msa0281530:three_prime_UTR 50.0%
TGGAATGTTGTGGGAGGTTG+AGG - chr2_3:17006133-17006152 Msa0281530:intron 50.0%
GGAATGTTGTGGGAGGTTGA+GGG - chr2_3:17006134-17006153 Msa0281530:intron 50.0%
!! TGGTGTGCAGTGGGTTACTA+AGG - chr2_3:17006246-17006265 Msa0281530:CDS 50.0%
!! GGTGTGCAGTGGGTTACTAA+GGG - chr2_3:17006247-17006266 Msa0281530:CDS 50.0%
CTAACGCTTCTGCTGAAGGT+GGG - chr2_3:17006293-17006312 Msa0281530:intron 50.0%
TAACGCTTCTGCTGAAGGTG+GGG - chr2_3:17006294-17006313 Msa0281530:intron 50.0%
GAGCTTGCCGAGCAAGTATT+TGG + chr2_3:17006619-17006638 None:intergenic 50.0%
ATACTTGCTCGGCAAGCTCA+AGG - chr2_3:17006620-17006639 Msa0281530:intron 50.0%
! GGTGAGAGCATGCATGATGA+TGG - chr2_3:17006885-17006904 Msa0281530:intron 50.0%
! CTTGGTCTTCGCCTACTACA+AGG - chr2_3:17006911-17006930 Msa0281530:intron 50.0%
GTCTTCGCCTACTACAAGGA+TGG - chr2_3:17006915-17006934 Msa0281530:intron 50.0%
AGCAGCACCATCCTTGTAGT+AGG + chr2_3:17006925-17006944 None:intergenic 50.0%
GGGCAGTGTAGAACTGTTGT+GGG + chr2_3:17007272-17007291 None:intergenic 50.0%
AGGGCAGTGTAGAACTGTTG+TGG + chr2_3:17007273-17007292 None:intergenic 50.0%
ATCAACCCCTCTTCACTCTC+AGG - chr2_3:17005090-17005109 Msa0281530:three_prime_UTR 50.0%
GCGGTGAAACAACAAGGGTA+CGG + chr2_3:17005121-17005140 None:intergenic 50.0%
GTTCGTGCGGTGAAACAACA+AGG + chr2_3:17005127-17005146 None:intergenic 50.0%
GGTTGCAAAGTGAGTTCGTG+CGG + chr2_3:17005140-17005159 None:intergenic 50.0%
CACGAACTCACTTTGCAACC+AGG - chr2_3:17005140-17005159 Msa0281530:three_prime_UTR 50.0%
TGGAATGTTGTGGGAGGTTG+AGG - chr2_3:17006133-17006152 Msa0281530:intron 50.0%
GGAATGTTGTGGGAGGTTGA+GGG - chr2_3:17006134-17006153 Msa0281530:intron 50.0%
!! TGGTGTGCAGTGGGTTACTA+AGG - chr2_3:17006246-17006265 Msa0281530:CDS 50.0%
!! GGTGTGCAGTGGGTTACTAA+GGG - chr2_3:17006247-17006266 Msa0281530:CDS 50.0%
CTAACGCTTCTGCTGAAGGT+GGG - chr2_3:17006293-17006312 Msa0281530:intron 50.0%
TAACGCTTCTGCTGAAGGTG+GGG - chr2_3:17006294-17006313 Msa0281530:intron 50.0%
GAGCTTGCCGAGCAAGTATT+TGG + chr2_3:17006619-17006638 None:intergenic 50.0%
ATACTTGCTCGGCAAGCTCA+AGG - chr2_3:17006620-17006639 Msa0281530:intron 50.0%
! GGTGAGAGCATGCATGATGA+TGG - chr2_3:17006885-17006904 Msa0281530:intron 50.0%
! CTTGGTCTTCGCCTACTACA+AGG - chr2_3:17006911-17006930 Msa0281530:intron 50.0%
GTCTTCGCCTACTACAAGGA+TGG - chr2_3:17006915-17006934 Msa0281530:intron 50.0%
AGCAGCACCATCCTTGTAGT+AGG + chr2_3:17006925-17006944 None:intergenic 50.0%
GGGCAGTGTAGAACTGTTGT+GGG + chr2_3:17007272-17007291 None:intergenic 50.0%
AGGGCAGTGTAGAACTGTTG+TGG + chr2_3:17007273-17007292 None:intergenic 50.0%
AGCGACCTGAGAGTGAAGAG+GGG + chr2_3:17005098-17005117 None:intergenic 55.0%
GAGCGACCTGAGAGTGAAGA+GGG + chr2_3:17005099-17005118 None:intergenic 55.0%
AACTGTCTCTGGATCGCTCC+TGG + chr2_3:17005161-17005180 None:intergenic 55.0%
GTTGTGGGAGGTTGAGGGAA+AGG - chr2_3:17006139-17006158 Msa0281530:intron 55.0%
GGTGCTAACGCTTCTGCTGA+AGG - chr2_3:17006289-17006308 Msa0281530:intron 55.0%
GCTAACGCTTCTGCTGAAGG+TGG - chr2_3:17006292-17006311 Msa0281530:intron 55.0%
TGCTGAAGGTGGGGAAGATG+AGG - chr2_3:17006303-17006322 Msa0281530:intron 55.0%
GCTGAAGGTGGGGAAGATGA+GGG - chr2_3:17006304-17006323 Msa0281530:intron 55.0%
AGCGACCTGAGAGTGAAGAG+GGG + chr2_3:17005098-17005117 None:intergenic 55.0%
GAGCGACCTGAGAGTGAAGA+GGG + chr2_3:17005099-17005118 None:intergenic 55.0%
AACTGTCTCTGGATCGCTCC+TGG + chr2_3:17005161-17005180 None:intergenic 55.0%
GTTGTGGGAGGTTGAGGGAA+AGG - chr2_3:17006139-17006158 Msa0281530:intron 55.0%
GGTGCTAACGCTTCTGCTGA+AGG - chr2_3:17006289-17006308 Msa0281530:intron 55.0%
GCTAACGCTTCTGCTGAAGG+TGG - chr2_3:17006292-17006311 Msa0281530:intron 55.0%
TGCTGAAGGTGGGGAAGATG+AGG - chr2_3:17006303-17006322 Msa0281530:intron 55.0%
GCTGAAGGTGGGGAAGATGA+GGG - chr2_3:17006304-17006323 Msa0281530:intron 55.0%
GGAGCGACCTGAGAGTGAAG+AGG + chr2_3:17005100-17005119 None:intergenic 60.0%
GGAGCGACCTGAGAGTGAAG+AGG + chr2_3:17005100-17005119 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 17005008 17007350 17005008 ID=Msa0281530;Name=Msa0281530
chr2_3 mRNA 17005008 17007350 17005008 ID=Msa0281530-mRNA-1;Parent=Msa0281530;Name=Msa0281530-mRNA-1;_AED=0.05;_eAED=0.05;_QI=185|1|1|1|1|1|5|355|167
chr2_3 exon 17005008 17005480 17005008 ID=Msa0281530-mRNA-1:exon:7057;Parent=Msa0281530-mRNA-1
chr2_3 exon 17005706 17005863 17005706 ID=Msa0281530-mRNA-1:exon:7056;Parent=Msa0281530-mRNA-1
chr2_3 exon 17005977 17006102 17005977 ID=Msa0281530-mRNA-1:exon:7055;Parent=Msa0281530-mRNA-1
chr2_3 exon 17006198 17006271 17006198 ID=Msa0281530-mRNA-1:exon:7054;Parent=Msa0281530-mRNA-1
chr2_3 exon 17007138 17007350 17007138 ID=Msa0281530-mRNA-1:exon:7053;Parent=Msa0281530-mRNA-1
chr2_3 five_prime_UTR 17007166 17007350 17007166 ID=Msa0281530-mRNA-1:five_prime_utr;Parent=Msa0281530-mRNA-1
chr2_3 CDS 17007138 17007165 17007138 ID=Msa0281530-mRNA-1:cds;Parent=Msa0281530-mRNA-1
chr2_3 CDS 17006198 17006271 17006198 ID=Msa0281530-mRNA-1:cds;Parent=Msa0281530-mRNA-1
chr2_3 CDS 17005977 17006102 17005977 ID=Msa0281530-mRNA-1:cds;Parent=Msa0281530-mRNA-1
chr2_3 CDS 17005706 17005863 17005706 ID=Msa0281530-mRNA-1:cds;Parent=Msa0281530-mRNA-1
chr2_3 CDS 17005363 17005480 17005363 ID=Msa0281530-mRNA-1:cds;Parent=Msa0281530-mRNA-1
chr2_3 three_prime_UTR 17005008 17005362 17005008 ID=Msa0281530-mRNA-1:three_prime_utr;Parent=Msa0281530-mRNA-1
Gene Sequence

>Msa0281530

ATGTTGGTTTACCAGGATCTCCTTACCGGTGATGAGCTTCTGTCAGACTCTTACCCATACAAGGAAATTGAGAATGGAATGTTGTGGGAGGTTGAGGGAAAGTGGGTTACTAAGGGAGTTGTTGAAGTAGACATTGGTGCTAACGCTTCTGCTGAAGGTGGGGAAGATGAGGGTGTTGATGACACAGCTGTTAAGGTTGTCGACATTGTTGACGTATTCAGACTTCAGGAACAACCTGCTTTTGACAAGAAGCAGTTTCTTGGCTTTGTTAAGAGGTATATCAAGTTGCTGACACCCAAACTAGATGCAGAGAAACAAGAGCTGTTTAAGAAGCACATTGAGGGAGCAACCAAATACTTGCTCGGCAAGCTCAAGGACCTTCAATTCTTTGTTGGTGAGAGCATGCATGATGATGGTAGCTTGGTCTTCGCCTACTACAAGGATGGTGCTGCTGATCCAACATTTCTCTACTTTGCTTATGCTTTGAAGGAAATCAAGTGTTAA

Protein sequence

>Msa0281530

MLVYQDLLTGDELLSDSYPYKEIENGMLWEVEGKWVTKGVVEVDIGANASAEGGEDEGVDDTAVKVVDIVDVFRLQEQPAFDKKQFLGFVKRYIKLLTPKLDAEKQELFKKHIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFAYALKEIKC*