Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373430 | XP_003601810.1 | 97.653 | 767 | 18 | 0 | 1 | 767 | 2 | 768 | 0.0 | 1538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373430 | sp|Q12955|ANK3_HUMAN | 24.407 | 590 | 351 | 17 | 85 | 632 | 268 | 804 | 2.46e-27 | 123 |
| Msa0373430 | sp|Q12955|ANK3_HUMAN | 23.955 | 718 | 440 | 21 | 30 | 671 | 48 | 735 | 1.30e-25 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373430 | G7JC18 | 97.653 | 767 | 18 | 0 | 1 | 767 | 2 | 768 | 0.0 | 1538 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373430 | Msa0421990 | 0.967266 | 4.845453e-127 | -8.615850e-47 |
| Msa0373430 | Msa0480020 | 0.987376 | 4.923863e-170 | -8.615850e-47 |
| Msa0373430 | Msa0514400 | 0.929680 | 4.907670e-93 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373430 | MtrunA17_Chr3g0122751 | 97.653 | 767 | 18 | 0 | 1 | 767 | 2 | 768 | 0.0 | 1538 |
| Msa0373430 | MtrunA17_Chr7g0226271 | 58.445 | 746 | 300 | 6 | 12 | 756 | 7 | 743 | 0.0 | 851 |
| Msa0373430 | MtrunA17_Chr6g0461061 | 23.510 | 302 | 184 | 9 | 281 | 549 | 167 | 454 | 6.00e-12 | 68.9 |
| Msa0373430 | MtrunA17_Chr5g0418551 | 33.562 | 146 | 88 | 4 | 483 | 628 | 90 | 226 | 5.70e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373430 | AT5G14230.1 | 54.594 | 751 | 328 | 7 | 12 | 761 | 7 | 745 | 0.0 | 780 |
| Msa0373430 | AT5G14230.2 | 53.769 | 597 | 263 | 7 | 166 | 761 | 1 | 585 | 0.0 | 593 |
Find 138 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGAATATGCCCTTAAAA+AGG | 0.174977 | 3_1:+72440145 | Msa0373430:CDS |
| ATTCTTCGGTGTTTGATTAA+TGG | 0.185908 | 3_1:+72439606 | Msa0373430:CDS |
| CTTCCAATGTGGAAACTATT+AGG | 0.253098 | 3_1:-72439432 | None:intergenic |
| GGAAGGCCATTTGAAAATAT+TGG | 0.260482 | 3_1:+72437704 | Msa0373430:CDS |
| CTAGATATCAAGGTCAAATT+AGG | 0.280904 | 3_1:+72439267 | Msa0373430:CDS |
| GAACCAAAATGGTGAAAATA+AGG | 0.285531 | 3_1:+72440103 | Msa0373430:CDS |
| AGTTTATCAGAAAGCAATTC+TGG | 0.286349 | 3_1:+72439803 | Msa0373430:CDS |
| AAGCACGATCTCCATTGTTT+TGG | 0.289357 | 3_1:-72436457 | None:intergenic |
| CTCATAGACTTGAACCAAAA+TGG | 0.291322 | 3_1:+72440092 | Msa0373430:CDS |
| AAGTTTGATGTTGATGAGTT+AGG | 0.314790 | 3_1:+72440665 | Msa0373430:CDS |
| CTTCACCGAGCAGCTTGTTA+TGG | 0.321590 | 3_1:+72440206 | Msa0373430:CDS |
| TTGGTGGATGTTAACTTCAT+TGG | 0.328128 | 3_1:+72436417 | Msa0373430:CDS |
| TCAAATTAGGAGCTTGGTCT+TGG | 0.331293 | 3_1:+72439280 | Msa0373430:CDS |
| TTGGACTCACAAACAAAGTT+TGG | 0.355546 | 3_1:+72439639 | Msa0373430:CDS |
| TTTGGTTCTAGAGCTAATAC+TGG | 0.362349 | 3_1:+72440803 | Msa0373430:CDS |
| GTTCATCTAGATTTATATTC+CGG | 0.369226 | 3_1:-72439938 | None:intergenic |
| GGGTTGAAATGGCTGAGTTA+TGG | 0.373265 | 3_1:+72440744 | Msa0373430:CDS |
| TGTAAATGTGAGATTGTTCC+GGG | 0.373790 | 3_1:+72437656 | Msa0373430:CDS |
| ATCTCTGTTTCGTAGTCAAT+TGG | 0.376161 | 3_1:-72436324 | None:intergenic |
| ATGTAAATGTGAGATTGTTC+CGG | 0.388075 | 3_1:+72437655 | Msa0373430:CDS |
| AGTCGCGCAGCCATGTGAAT+AGG | 0.389655 | 3_1:-72439570 | None:intergenic |
| TTGGATCATGCAACATTCTT+CGG | 0.392048 | 3_1:+72439592 | Msa0373430:CDS |
| GGTTGAAATGGCTGAGTTAT+GGG | 0.394310 | 3_1:+72440745 | Msa0373430:CDS |
| TGTAGTTAGACTACTGTTGC+AGG | 0.401334 | 3_1:+72438654 | Msa0373430:CDS |
| ATTCACATGGCTGCGCGACT+TGG | 0.408350 | 3_1:+72439573 | Msa0373430:CDS |
| ATGGCTGAGTTATGGGTAAG+AGG | 0.413141 | 3_1:+72440752 | Msa0373430:CDS |
| TGTTTCCTTAGCCCTGTACT+AGG | 0.421197 | 3_1:-72436294 | None:intergenic |
| ATTACCAATTGTTTCTTATG+TGG | 0.423272 | 3_1:-72440533 | None:intergenic |
| TGGCTGAGTTATGGGTAAGA+GGG | 0.432048 | 3_1:+72440753 | Msa0373430:CDS |
| TTGTGAAGGTGGGGTTGAAA+TGG | 0.432096 | 3_1:+72440733 | Msa0373430:CDS |
| AAGAAACAATTGGTAATGAT+TGG | 0.433525 | 3_1:+72440539 | Msa0373430:CDS |
| GTCGCGCAGCCATGTGAATA+GGG | 0.441194 | 3_1:-72439569 | None:intergenic |
| TTCAAGGTACTTCTTCATGC+TGG | 0.441197 | 3_1:+72440020 | Msa0373430:CDS |
| AAGAAATGTTGTTTGTAAAG+AGG | 0.443386 | 3_1:+72440598 | Msa0373430:CDS |
| TATTTGCTGCTGTGGTCAGC+AGG | 0.443955 | 3_1:+72438623 | Msa0373430:CDS |
| CTTGTCTCTGCTTGTTGCAG+AGG | 0.445183 | 3_1:+72437864 | Msa0373430:CDS |
| AACATACAAAATGTGGTAAA+GGG | 0.451192 | 3_1:+72440507 | Msa0373430:CDS |
| CTAGATGAACAAAACGCAAA+TGG | 0.451756 | 3_1:+72439951 | Msa0373430:CDS |
| TCAACATTAGCGTGAAGAAA+TGG | 0.452245 | 3_1:-72438589 | None:intergenic |
| GGGTAACGTGGAAGCTTTCA+AGG | 0.453069 | 3_1:+72440004 | Msa0373430:CDS |
| AAACATACAAAATGTGGTAA+AGG | 0.454523 | 3_1:+72440506 | Msa0373430:CDS |
| TCTACAGCACACCATGTGAT+TGG | 0.456993 | 3_1:-72439357 | None:intergenic |
| ATTCTGGATATAATTAGATC+TGG | 0.458790 | 3_1:+72439819 | Msa0373430:CDS |
| GACTCTAATTCGTAAGCTGC+TGG | 0.462966 | 3_1:+72436572 | Msa0373430:CDS |
| TCTCTTGCTGCTAACATCAA+TGG | 0.465497 | 3_1:-72440305 | None:intergenic |
| GAAGGGTATTATGATGTGAA+TGG | 0.467144 | 3_1:+72440260 | Msa0373430:CDS |
| CAAATTAGGAGCTTGGTCTT+GGG | 0.472134 | 3_1:+72439281 | Msa0373430:CDS |
| AGTATCATCAGGAGCTGACT+TGG | 0.473154 | 3_1:+72439719 | Msa0373430:CDS |
| GATTAATGGTAAGTGTAACT+TGG | 0.488282 | 3_1:+72439620 | Msa0373430:CDS |
| GAAGAATTTCGTGTAGGTGT+TGG | 0.491534 | 3_1:+72439318 | Msa0373430:CDS |
| GTATCATCAGGAGCTGACTT+GGG | 0.496179 | 3_1:+72439720 | Msa0373430:CDS |
| CGGCATTGATGATTTGTACA+AGG | 0.498203 | 3_1:+72439667 | Msa0373430:CDS |
| TCTTTCATTGTTACACATGA+TGG | 0.498969 | 3_1:-72439472 | None:intergenic |
| TTTAAGTAATGGTGTGGATA+CGG | 0.499496 | 3_1:+72439509 | Msa0373430:CDS |
| TTGGTAATGATTGGTGCTGC+TGG | 0.499601 | 3_1:+72440548 | Msa0373430:CDS |
| GCACACCATGTGATTGGATA+AGG | 0.500807 | 3_1:-72439351 | None:intergenic |
| TACTGAAGTTGCGCAATGAC+CGG | 0.504102 | 3_1:-72439757 | None:intergenic |
| TCAAGGTCAAATTAGGAGCT+TGG | 0.504271 | 3_1:+72439274 | Msa0373430:CDS |
| CAATGCATTATTTGCTGCTG+TGG | 0.507461 | 3_1:+72438615 | Msa0373430:CDS |
| GCGACGCCCCACCATTGATA+AGG | 0.507974 | 3_1:-72437731 | None:intergenic |
| GTATGAAGAGTTTAAAATTG+AGG | 0.511045 | 3_1:+72436512 | Msa0373430:CDS |
| CAAAGGAAATGATGCAGAGC+GGG | 0.513044 | 3_1:+72440430 | Msa0373430:CDS |
| TGGATTCGCTAAACATTCAA+TGG | 0.514214 | 3_1:-72436394 | None:intergenic |
| TTCCATCGAAATCTTTCACT+TGG | 0.516599 | 3_1:-72440632 | None:intergenic |
| GTCGCCACATAAGAAACAAT+TGG | 0.518627 | 3_1:+72440529 | Msa0373430:CDS |
| GATATAATTAGATCTGGAAA+AGG | 0.519776 | 3_1:+72439825 | Msa0373430:CDS |
| TGTGGAAACTATTAGGTGAC+AGG | 0.527496 | 3_1:-72439425 | None:intergenic |
| CTCTGCAACAAGCAGAGACA+AGG | 0.528740 | 3_1:-72437863 | None:intergenic |
| TGTTGTTTGTAAAGAGGCTG+AGG | 0.529305 | 3_1:+72440604 | Msa0373430:CDS |
| TGGTCTTGGGAAACAGATAC+AGG | 0.531451 | 3_1:+72439294 | Msa0373430:CDS |
| GCGTTGGTGAGTCCTAGTAC+AGG | 0.537434 | 3_1:+72436282 | Msa0373430:CDS |
| TGCTACAACAGCAGCAGTGA+GGG | 0.545172 | 3_1:+72437683 | Msa0373430:CDS |
| TTACTTGAAGCAAGCTATGT+GGG | 0.546833 | 3_1:+72437774 | Msa0373430:CDS |
| TGGAGGTCCTTATCAATGGT+GGG | 0.547063 | 3_1:+72437724 | Msa0373430:CDS |
| CAACATCAAACTTCTTCCTA+CGG | 0.548005 | 3_1:-72440655 | None:intergenic |
| TCTAGAGCTAATACTGGCTG+AGG | 0.551926 | 3_1:+72440809 | Msa0373430:CDS |
| TGGTGTAAGACTAGATATCA+AGG | 0.554150 | 3_1:+72439257 | Msa0373430:CDS |
| TAACAAGCTGCTCGGTGAAG+AGG | 0.560472 | 3_1:-72440203 | None:intergenic |
| GGTTGTTGATGTACTCATCA+AGG | 0.562299 | 3_1:+72437896 | Msa0373430:CDS |
| AATATTAGTACTTTAACCGA+GGG | 0.563629 | 3_1:+72440176 | Msa0373430:CDS |
| GGTTTGTTTGCAGCATGGAG+TGG | 0.566933 | 3_1:+72438525 | Msa0373430:intron |
| TTGGAGGTCCTTATCAATGG+TGG | 0.567906 | 3_1:+72437723 | Msa0373430:CDS |
| CATTGTTACACATGATGGTG+TGG | 0.569124 | 3_1:-72439467 | None:intergenic |
| ATATTGGAGGTCCTTATCAA+TGG | 0.569895 | 3_1:+72437720 | Msa0373430:CDS |
| TTTACTTGAAGCAAGCTATG+TGG | 0.573064 | 3_1:+72437773 | Msa0373430:CDS |
| GTCATGATAGCTGCCGCAGA+GGG | 0.576593 | 3_1:+72439984 | Msa0373430:CDS |
| TTGGGGATAGTAAATTCGTC+CGG | 0.577097 | 3_1:+72439738 | Msa0373430:CDS |
| GAATATTAGTACTTTAACCG+AGG | 0.578648 | 3_1:+72440175 | Msa0373430:CDS |
| AGGCCATTTGAAAATATTGG+AGG | 0.582676 | 3_1:+72437707 | Msa0373430:CDS |
| AGCTGCCGCAGAGGGTAACG+TGG | 0.588395 | 3_1:+72439992 | Msa0373430:CDS |
| CAATGTACACCCTATTCACA+TGG | 0.589994 | 3_1:+72439560 | Msa0373430:CDS |
| TACACTGAATTTACTCGATG+AGG | 0.593045 | 3_1:-72436492 | None:intergenic |
| GTTTGTAAAGAGGCTGAGGT+AGG | 0.597465 | 3_1:+72440608 | Msa0373430:CDS |
| CACTCGAGCGAATGACATAG+AGG | 0.598935 | 3_1:+72439893 | Msa0373430:CDS |
| CTGCTGTTGTAGCATAGCCC+CGG | 0.599857 | 3_1:-72437674 | None:intergenic |
| TTAGCAGCAAGAGAAAGTAA+TGG | 0.601878 | 3_1:+72440314 | Msa0373430:CDS |
| GGAGGTCCTTATCAATGGTG+GGG | 0.602282 | 3_1:+72437725 | Msa0373430:CDS |
| TGGATGTTAATGCAATGGAT+AGG | 0.603440 | 3_1:+72438545 | Msa0373430:CDS |
| ATGTTTAGCGAATCCATTGG+TGG | 0.603618 | 3_1:+72436401 | Msa0373430:CDS |
| CATGTTGAGTATAGTACCAG+TGG | 0.606160 | 3_1:-72439391 | None:intergenic |
| CTTGCTAGAGAAAATAACAA+AGG | 0.606392 | 3_1:+72440413 | Msa0373430:CDS |
| GATGTTGAAGTCCAAAACAA+TGG | 0.608066 | 3_1:+72436446 | Msa0373430:CDS |
| TGAGTCCTAGTACAGGGCTA+AGG | 0.609927 | 3_1:+72436289 | Msa0373430:CDS |
| TGAATGTTTAGCGAATCCAT+TGG | 0.610245 | 3_1:+72436398 | Msa0373430:CDS |
| TCACCTAATAGTTTCCACAT+TGG | 0.614105 | 3_1:+72439429 | Msa0373430:CDS |
| TATCATCAGGAGCTGACTTG+GGG | 0.619391 | 3_1:+72439721 | Msa0373430:CDS |
| GACCAAGTGAAAGATTTCGA+TGG | 0.625666 | 3_1:+72440630 | Msa0373430:CDS |
| TGGAGTGGATGTTAATGCAA+TGG | 0.627216 | 3_1:+72438540 | Msa0373430:CDS |
| CATGTATTGCAACACGAGGA+CGG | 0.631502 | 3_1:-72437839 | None:intergenic |
| ACAAACAAAGTTTGGTGACA+CGG | 0.631687 | 3_1:+72439647 | Msa0373430:CDS |
| ATGAAGTTAACATCCACCAA+TGG | 0.633936 | 3_1:-72436414 | None:intergenic |
| CATGTGAATAGGGTGTACAT+TGG | 0.634202 | 3_1:-72439559 | None:intergenic |
| ACAACAGCAGCAGTGAGGGA+AGG | 0.634576 | 3_1:+72437687 | Msa0373430:CDS |
| AAAGATTTCGATGGAACCGT+AGG | 0.636964 | 3_1:+72440639 | Msa0373430:CDS |
| GTCGCAACTTGCATGCGAAG+AGG | 0.636970 | 3_1:+72437749 | Msa0373430:CDS |
| TGTCATGATAGCTGCCGCAG+AGG | 0.638941 | 3_1:+72439983 | Msa0373430:CDS |
| CTGAGCCTTATCCAATCACA+TGG | 0.641426 | 3_1:+72439346 | Msa0373430:CDS |
| CGTTGGTGAGTCCTAGTACA+GGG | 0.644162 | 3_1:+72436283 | Msa0373430:CDS |
| TGTCTCCATAACAAGCTGCT+CGG | 0.646022 | 3_1:-72440211 | None:intergenic |
| ACAAAGGAAATGATGCAGAG+CGG | 0.647414 | 3_1:+72440429 | Msa0373430:CDS |
| AACACGAGGACGGATCATGT+TGG | 0.649295 | 3_1:-72437829 | None:intergenic |
| ACAGGAGAAGAATTTCGTGT+AGG | 0.653770 | 3_1:+72439312 | Msa0373430:CDS |
| GCAAGAGAGTTCTTCCAATG+TGG | 0.656913 | 3_1:-72439443 | None:intergenic |
| TCTGCAACAAGCAGAGACAA+GGG | 0.657171 | 3_1:-72437862 | None:intergenic |
| AGCTTCCACGTTACCCTCTG+CGG | 0.660367 | 3_1:-72439997 | None:intergenic |
| CTAGAGCTAATACTGGCTGA+GGG | 0.661333 | 3_1:+72440810 | Msa0373430:CDS |
| GGATGTTAACTTCATTGGAA+CGG | 0.666070 | 3_1:+72436422 | Msa0373430:CDS |
| GATGAGTACATCAACAACCT+CGG | 0.687569 | 3_1:-72437892 | None:intergenic |
| ATGCTACAACAGCAGCAGTG+AGG | 0.688425 | 3_1:+72437682 | Msa0373430:CDS |
| AATTTCATGTGATAGAATGT+GGG | 0.694020 | 3_1:+72437627 | Msa0373430:intron |
| GTGAAGAAACATACAAAATG+TGG | 0.694360 | 3_1:+72440500 | Msa0373430:CDS |
| TCGGTGAAGAGGATTCCCCT+CGG | 0.695815 | 3_1:-72440192 | None:intergenic |
| GCTAGAATAGTAGTGTTGTG+TGG | 0.706489 | 3_1:+72440470 | Msa0373430:CDS |
| CTTGTTGATGCAGCTCATCG+CGG | 0.711378 | 3_1:+72436357 | Msa0373430:CDS |
| ATATTAGTACTTTAACCGAG+GGG | 0.718701 | 3_1:+72440177 | Msa0373430:CDS |
| GTAAATGTGAGATTGTTCCG+GGG | 0.747988 | 3_1:+72437657 | Msa0373430:CDS |
| AGGGCATGTATTGCAACACG+AGG | 0.751125 | 3_1:-72437843 | None:intergenic |
| TTGTTGCAGAGGATTCACCG+AGG | 0.802394 | 3_1:+72437875 | Msa0373430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTGATTTTTTTTTTTTTT+TGG | + | chr3_1:72437017-72437036 | Msa0373430:intron | 10.0% |
| !! | TTATAAACATAATTACATAT+TGG | - | chr3_1:72437170-72437189 | None:intergenic | 10.0% |
| !! | ATATAATTACATTTATTTGA+GGG | - | chr3_1:72437980-72437999 | None:intergenic | 10.0% |
| !! | AATATAATTACATTTATTTG+AGG | - | chr3_1:72437981-72438000 | None:intergenic | 10.0% |
| !!! | TATTTTAATTTGTTAACTTT+TGG | + | chr3_1:72438790-72438809 | Msa0373430:intron | 10.0% |
| !!! | ATTTTAATTTGTTAACTTTT+GGG | + | chr3_1:72438791-72438810 | Msa0373430:intron | 10.0% |
| !! | AAACTAATATTAATCTAATA+CGG | - | chr3_1:72439025-72439044 | None:intergenic | 10.0% |
| !! | TTGAAAAATTATTAAAAGAA+GGG | + | chr3_1:72440243-72440262 | Msa0373430:CDS | 10.0% |
| !!! | AATTCAATTTAGAGTTAAAA+GGG | - | chr3_1:72437482-72437501 | None:intergenic | 15.0% |
| !!! | AAATTCAATTTAGAGTTAAA+AGG | - | chr3_1:72437483-72437502 | None:intergenic | 15.0% |
| !! | AAAACTTAGTTAATAATGAA+TGG | - | chr3_1:72437604-72437623 | None:intergenic | 15.0% |
| !!! | ATTCATTATTAACTAAGTTT+TGG | + | chr3_1:72437603-72437622 | Msa0373430:intron | 15.0% |
| !!! | TTCATTATTAACTAAGTTTT+GGG | + | chr3_1:72437604-72437623 | Msa0373430:intron | 15.0% |
| !! | TATAATTACATTTATTTGAG+GGG | - | chr3_1:72437979-72437998 | None:intergenic | 15.0% |
| !! | AATATATTACATTTAGTTGA+GGG | - | chr3_1:72438058-72438077 | None:intergenic | 15.0% |
| !! | ATATGATTATATTTAGTTGA+GGG | - | chr3_1:72438135-72438154 | None:intergenic | 15.0% |
| !! | AATATGATTATATTTAGTTG+AGG | - | chr3_1:72438136-72438155 | None:intergenic | 15.0% |
| !! | TATAATTTATCAAAAAACAG+TGG | + | chr3_1:72438252-72438271 | Msa0373430:intron | 15.0% |
| !!! | GTTATTTGATTTAGTAAAAA+AGG | + | chr3_1:72438313-72438332 | Msa0373430:intron | 15.0% |
| !!! | TGTTTTCTTTTTAAAATTTC+TGG | + | chr3_1:72438429-72438448 | Msa0373430:intron | 15.0% |
| !! | TAGTAATCAATTATATTCAT+AGG | - | chr3_1:72438488-72438507 | None:intergenic | 15.0% |
| !! | TAATAATTGATTAATTGTGT+TGG | + | chr3_1:72438742-72438761 | Msa0373430:intron | 15.0% |
| !!! | TTGAATATACTTTTAAGTAA+TGG | + | chr3_1:72439498-72439517 | Msa0373430:CDS | 15.0% |
| !! | ATCAATCTTAAAAACAAATA+TGG | + | chr3_1:72440053-72440072 | Msa0373430:CDS | 15.0% |
| !!! | AAATAAGGAAAATTTTCATA+AGG | + | chr3_1:72440118-72440137 | Msa0373430:CDS | 15.0% |
| !! | GTTGAAAAATTATTAAAAGA+AGG | + | chr3_1:72440242-72440261 | Msa0373430:CDS | 15.0% |
| !!! | ATTTTCGAAAACACAAAATA+AGG | - | chr3_1:72436622-72436641 | None:intergenic | 20.0% |
| !! | ATATTTCAACAATGTTAGTA+AGG | + | chr3_1:72437069-72437088 | Msa0373430:intron | 20.0% |
| !!! | TTTTTCTATCCTTATTCTTT+CGG | + | chr3_1:72437264-72437283 | Msa0373430:intron | 20.0% |
| !! | AAAAGAAGAAAGAAGATAAA+TGG | - | chr3_1:72437331-72437350 | None:intergenic | 20.0% |
| !! | TCATAACATTTAAATGTGTT+CGG | - | chr3_1:72437361-72437380 | None:intergenic | 20.0% |
| !! | ACATACACTAGTAATTATAA+TGG | - | chr3_1:72437927-72437946 | None:intergenic | 20.0% |
| !! | ATATATTACATTTAGTTGAG+GGG | - | chr3_1:72438057-72438076 | None:intergenic | 20.0% |
| !! | GAATATATTACATTTAGTTG+AGG | - | chr3_1:72438059-72438078 | None:intergenic | 20.0% |
| !! | TATGATTATATTTAGTTGAG+GGG | - | chr3_1:72438134-72438153 | None:intergenic | 20.0% |
| !! | TTATAAATGATAGAACCAAT+AGG | - | chr3_1:72438237-72438256 | None:intergenic | 20.0% |
| !! | TTATTAAAGAATATACGTAG+GGG | - | chr3_1:72438403-72438422 | None:intergenic | 20.0% |
| !! | CTTATTAAAGAATATACGTA+GGG | - | chr3_1:72438404-72438423 | None:intergenic | 20.0% |
| !! | TCTTATTAAAGAATATACGT+AGG | - | chr3_1:72438405-72438424 | None:intergenic | 20.0% |
| !! | ATAAGTAATAAACTTCACAT+GGG | + | chr3_1:72438693-72438712 | Msa0373430:intron | 20.0% |
| !! | AATGTGATATTAAAAATGAG+AGG | + | chr3_1:72440372-72440391 | Msa0373430:CDS | 20.0% |
| !! | GTATGAAGAGTTTAAAATTG+AGG | + | chr3_1:72436512-72436531 | Msa0373430:CDS | 25.0% |
| !!! | GATTATTTGAAACGTGATTT+TGG | + | chr3_1:72436661-72436680 | Msa0373430:intron | 25.0% |
| ! | GAAAACAGTTAAAAATGTGA+CGG | + | chr3_1:72436919-72436938 | Msa0373430:intron | 25.0% |
| ! | AAAAATCAGTTTAGAAACCA+GGG | - | chr3_1:72437008-72437027 | None:intergenic | 25.0% |
| ! | AAAAAATCAGTTTAGAAACC+AGG | - | chr3_1:72437009-72437028 | None:intergenic | 25.0% |
| ! | AATGTTAGTAAGGCAATAAT+TGG | + | chr3_1:72437079-72437098 | Msa0373430:intron | 25.0% |
| !!! | GTTGGATTTATTTTCATGTA+TGG | + | chr3_1:72437225-72437244 | Msa0373430:intron | 25.0% |
| ! | TTGGATAGAAAGATCAAATA+TGG | - | chr3_1:72437299-72437318 | None:intergenic | 25.0% |
| ! | AGATAAATGGAATTTAGTGT+TGG | - | chr3_1:72437318-72437337 | None:intergenic | 25.0% |
| !! | ATTACTAATTTGTCTGATGT+AGG | + | chr3_1:72437420-72437439 | Msa0373430:intron | 25.0% |
| ! | AATTTCATGTGATAGAATGT+GGG | + | chr3_1:72437627-72437646 | Msa0373430:intron | 25.0% |
| ! | ATGGATACATTTATAAGTCA+AGG | + | chr3_1:72438023-72438042 | Msa0373430:intron | 25.0% |
| ! | ATTTATCAAAAAACAGTGGA+AGG | + | chr3_1:72438256-72438275 | Msa0373430:intron | 25.0% |
| ! | AAAATTGCTACACCAAAATT+TGG | + | chr3_1:72438374-72438393 | Msa0373430:intron | 25.0% |
| !!! | TACTAAATGACACTTTTTCT+TGG | + | chr3_1:72438503-72438522 | Msa0373430:intron | 25.0% |
| !!! | ACTAAATGACACTTTTTCTT+GGG | + | chr3_1:72438504-72438523 | Msa0373430:intron | 25.0% |
| ! | GATAAGTAATAAACTTCACA+TGG | + | chr3_1:72438692-72438711 | Msa0373430:intron | 25.0% |
| ! | AAGCTAAGATATACTATCAA+AGG | - | chr3_1:72438844-72438863 | None:intergenic | 25.0% |
| !! | CCTTACAAATCAATTTTGTA+CGG | - | chr3_1:72438889-72438908 | None:intergenic | 25.0% |
| ! | AAGAGGATATGTTGAAAAAA+GGG | - | chr3_1:72438934-72438953 | None:intergenic | 25.0% |
| ! | TAAGAGGATATGTTGAAAAA+AGG | - | chr3_1:72438935-72438954 | None:intergenic | 25.0% |
| ! | CGTGTTTATAAAGAGAAAAA+AGG | - | chr3_1:72439079-72439098 | None:intergenic | 25.0% |
| !! | TTTTTCTCTTTATAAACACG+TGG | + | chr3_1:72439079-72439098 | Msa0373430:intron | 25.0% |
| !! | TTTTCTCTTTATAAACACGT+GGG | + | chr3_1:72439080-72439099 | Msa0373430:intron | 25.0% |
| !!! | TATACTTTTAAGTAATGGTG+TGG | + | chr3_1:72439503-72439522 | Msa0373430:CDS | 25.0% |
| ! | ATTCTGGATATAATTAGATC+TGG | + | chr3_1:72439819-72439838 | Msa0373430:CDS | 25.0% |
| ! | GATATAATTAGATCTGGAAA+AGG | + | chr3_1:72439825-72439844 | Msa0373430:CDS | 25.0% |
| ! | GTTCATCTAGATTTATATTC+CGG | - | chr3_1:72439941-72439960 | None:intergenic | 25.0% |
| !!! | TTTCCTTATTTTCACCATTT+TGG | - | chr3_1:72440109-72440128 | None:intergenic | 25.0% |
| ! | TTTGAATATGCCCTTAAAAA+GGG | + | chr3_1:72440146-72440165 | Msa0373430:CDS | 25.0% |
| ! | AATATTAGTACTTTAACCGA+GGG | + | chr3_1:72440176-72440195 | Msa0373430:CDS | 25.0% |
| !!! | TGTGAGATTTTGATATCTTA+CGG | + | chr3_1:72440344-72440363 | Msa0373430:CDS | 25.0% |
| ! | AAACATACAAAATGTGGTAA+AGG | + | chr3_1:72440506-72440525 | Msa0373430:CDS | 25.0% |
| ! | AACATACAAAATGTGGTAAA+GGG | + | chr3_1:72440507-72440526 | Msa0373430:CDS | 25.0% |
| !! | ATTACCAATTGTTTCTTATG+TGG | - | chr3_1:72440536-72440555 | None:intergenic | 25.0% |
| !!! | AAGAAACAATTGGTAATGAT+TGG | + | chr3_1:72440539-72440558 | Msa0373430:CDS | 25.0% |
| !! | AAGAAATGTTGTTTGTAAAG+AGG | + | chr3_1:72440598-72440617 | Msa0373430:CDS | 25.0% |
| ! | TGTTGTTACTGCAAAAAATA+AGG | + | chr3_1:72440697-72440716 | Msa0373430:CDS | 25.0% |
| ACAAAATAAGGCAGAACATT+CGG | - | chr3_1:72436610-72436629 | None:intergenic | 30.0% | |
| GATTACAACAGTGATAATCA+TGG | - | chr3_1:72436687-72436706 | None:intergenic | 30.0% | |
| TCACATGTCATTGATACATT+GGG | - | chr3_1:72436971-72436990 | None:intergenic | 30.0% | |
| TTCACATGTCATTGATACAT+TGG | - | chr3_1:72436972-72436991 | None:intergenic | 30.0% | |
| AAAATCAGTTTAGAAACCAG+GGG | - | chr3_1:72437007-72437026 | None:intergenic | 30.0% | |
| TCCTTATTCTTTCGGATAAT+TGG | + | chr3_1:72437272-72437291 | Msa0373430:intron | 30.0% | |
| ACCAATTATCCGAAAGAATA+AGG | - | chr3_1:72437276-72437295 | None:intergenic | 30.0% | |
| AGAGTTAAAAGGGTAATTCA+TGG | - | chr3_1:72437472-72437491 | None:intergenic | 30.0% | |
| GAATTTCATGTGATAGAATG+TGG | + | chr3_1:72437626-72437645 | Msa0373430:intron | 30.0% | |
| ATGTAAATGTGAGATTGTTC+CGG | + | chr3_1:72437655-72437674 | Msa0373430:CDS | 30.0% | |
| GTAGATGATATCCAAAAAAG+CGG | - | chr3_1:72437950-72437969 | None:intergenic | 30.0% | |
| ATGGGATAATAAACATGTCT+AGG | + | chr3_1:72438711-72438730 | Msa0373430:intron | 30.0% | |
| !! | CTTAGCTTTAACATATTGTC+TGG | + | chr3_1:72438856-72438875 | Msa0373430:intron | 30.0% |
| !! | CCGTACAAAATTGATTTGTA+AGG | + | chr3_1:72438886-72438905 | Msa0373430:intron | 30.0% |
| ! | TATTAACCGATCTCTAAAAG+AGG | + | chr3_1:72439205-72439224 | Msa0373430:intron | 30.0% |
| !! | TTAGTTCCTCTTTTAGAGAT+CGG | - | chr3_1:72439214-72439233 | None:intergenic | 30.0% |
| ! | ATTTTCTGATTTCTGCAATC+AGG | + | chr3_1:72439233-72439252 | Msa0373430:intron | 30.0% |
| CTAGATATCAAGGTCAAATT+AGG | + | chr3_1:72439267-72439286 | Msa0373430:CDS | 30.0% | |
| TCTTTCATTGTTACACATGA+TGG | - | chr3_1:72439475-72439494 | None:intergenic | 30.0% | |
| TTTAAGTAATGGTGTGGATA+CGG | + | chr3_1:72439509-72439528 | Msa0373430:CDS | 30.0% | |
| !! | ATTCTTCGGTGTTTGATTAA+TGG | + | chr3_1:72439606-72439625 | Msa0373430:CDS | 30.0% |
| GATTAATGGTAAGTGTAACT+TGG | + | chr3_1:72439620-72439639 | Msa0373430:CDS | 30.0% | |
| AGTTTATCAGAAAGCAATTC+TGG | + | chr3_1:72439803-72439822 | Msa0373430:CDS | 30.0% | |
| TGAAAAAACTCATCGAATAC+CGG | + | chr3_1:72439919-72439938 | Msa0373430:CDS | 30.0% | |
| GAACCAAAATGGTGAAAATA+AGG | + | chr3_1:72440103-72440122 | Msa0373430:CDS | 30.0% | |
| GTTTGAATATGCCCTTAAAA+AGG | + | chr3_1:72440145-72440164 | Msa0373430:CDS | 30.0% | |
| ! | ATTCAGACATCCCTTTTTAA+GGG | - | chr3_1:72440159-72440178 | None:intergenic | 30.0% |
| ! | TATTCAGACATCCCTTTTTA+AGG | - | chr3_1:72440160-72440179 | None:intergenic | 30.0% |
| GAATATTAGTACTTTAACCG+AGG | + | chr3_1:72440175-72440194 | Msa0373430:CDS | 30.0% | |
| ATATTAGTACTTTAACCGAG+GGG | + | chr3_1:72440177-72440196 | Msa0373430:CDS | 30.0% | |
| !!! | TATGATGTGAATGGTTTTGA+TGG | + | chr3_1:72440269-72440288 | Msa0373430:CDS | 30.0% |
| CTTGCTAGAGAAAATAACAA+AGG | + | chr3_1:72440413-72440432 | Msa0373430:CDS | 30.0% | |
| GTGAAGAAACATACAAAATG+TGG | + | chr3_1:72440500-72440519 | Msa0373430:CDS | 30.0% | |
| ! | AAGTTTGATGTTGATGAGTT+AGG | + | chr3_1:72440665-72440684 | Msa0373430:CDS | 30.0% |
| TGTTACTGCAAAAAATAAGG+AGG | + | chr3_1:72440700-72440719 | Msa0373430:CDS | 30.0% | |
| !! | ATTAGCTCTAGAACCAAAAA+TGG | - | chr3_1:72440801-72440820 | None:intergenic | 30.0% |
| ATCTCTGTTTCGTAGTCAAT+TGG | - | chr3_1:72436327-72436346 | None:intergenic | 35.0% | |
| TGGATTCGCTAAACATTCAA+TGG | - | chr3_1:72436397-72436416 | None:intergenic | 35.0% | |
| TGAATGTTTAGCGAATCCAT+TGG | + | chr3_1:72436398-72436417 | Msa0373430:CDS | 35.0% | |
| ATGAAGTTAACATCCACCAA+TGG | - | chr3_1:72436417-72436436 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGTTAACTTCAT+TGG | + | chr3_1:72436417-72436436 | Msa0373430:CDS | 35.0% |
| GGATGTTAACTTCATTGGAA+CGG | + | chr3_1:72436422-72436441 | Msa0373430:CDS | 35.0% | |
| GATGTTGAAGTCCAAAACAA+TGG | + | chr3_1:72436446-72436465 | Msa0373430:CDS | 35.0% | |
| TACACTGAATTTACTCGATG+AGG | - | chr3_1:72436495-72436514 | None:intergenic | 35.0% | |
| ! | TTCAATTTTGTGATTGCGCT+TGG | + | chr3_1:72436714-72436733 | Msa0373430:intron | 35.0% |
| AGCTGCAGTTTATCTGAAAA+CGG | - | chr3_1:72436780-72436799 | None:intergenic | 35.0% | |
| ! | TCAATTTAGCTCATCGTGAT+CGG | + | chr3_1:72436808-72436827 | Msa0373430:intron | 35.0% |
| ! | TGAATTTTCTTCTTTTCCCC+TGG | + | chr3_1:72436988-72437007 | Msa0373430:intron | 35.0% |
| TTCATGTATGGAACTATGTC+AGG | + | chr3_1:72437237-72437256 | Msa0373430:intron | 35.0% | |
| TCATGTATGGAACTATGTCA+GGG | + | chr3_1:72437238-72437257 | Msa0373430:intron | 35.0% | |
| TGTAAATGTGAGATTGTTCC+GGG | + | chr3_1:72437656-72437675 | Msa0373430:CDS | 35.0% | |
| GGAAGGCCATTTGAAAATAT+TGG | + | chr3_1:72437704-72437723 | Msa0373430:CDS | 35.0% | |
| AGGCCATTTGAAAATATTGG+AGG | + | chr3_1:72437707-72437726 | Msa0373430:CDS | 35.0% | |
| ! | GGACCTCCAATATTTTCAAA+TGG | - | chr3_1:72437713-72437732 | None:intergenic | 35.0% |
| ATATTGGAGGTCCTTATCAA+TGG | + | chr3_1:72437720-72437739 | Msa0373430:CDS | 35.0% | |
| TTTACTTGAAGCAAGCTATG+TGG | + | chr3_1:72437773-72437792 | Msa0373430:CDS | 35.0% | |
| TTACTTGAAGCAAGCTATGT+GGG | + | chr3_1:72437774-72437793 | Msa0373430:CDS | 35.0% | |
| GACATGTCAGACACTAAATA+TGG | + | chr3_1:72438004-72438023 | Msa0373430:intron | 35.0% | |
| TGATAGAACCAATAGGAGTT+GGG | - | chr3_1:72438230-72438249 | None:intergenic | 35.0% | |
| ATGATAGAACCAATAGGAGT+TGG | - | chr3_1:72438231-72438250 | None:intergenic | 35.0% | |
| TGGATGTTAATGCAATGGAT+AGG | + | chr3_1:72438545-72438564 | Msa0373430:CDS | 35.0% | |
| TCAACATTAGCGTGAAGAAA+TGG | - | chr3_1:72438592-72438611 | None:intergenic | 35.0% | |
| GAAACTTGACAGGCTAATAT+TGG | - | chr3_1:72439158-72439177 | None:intergenic | 35.0% | |
| ACACAATGTAGAAACTTGAC+AGG | - | chr3_1:72439168-72439187 | None:intergenic | 35.0% | |
| TGGTGTAAGACTAGATATCA+AGG | + | chr3_1:72439257-72439276 | Msa0373430:CDS | 35.0% | |
| !! | GTAGAGTATTTTGAATCCAC+TGG | + | chr3_1:72439375-72439394 | Msa0373430:CDS | 35.0% |
| TCACCTAATAGTTTCCACAT+TGG | + | chr3_1:72439429-72439448 | Msa0373430:CDS | 35.0% | |
| CTTCCAATGTGGAAACTATT+AGG | - | chr3_1:72439435-72439454 | None:intergenic | 35.0% | |
| TTGGATCATGCAACATTCTT+CGG | + | chr3_1:72439592-72439611 | Msa0373430:CDS | 35.0% | |
| TTGGACTCACAAACAAAGTT+TGG | + | chr3_1:72439639-72439658 | Msa0373430:CDS | 35.0% | |
| ! | ACAAACAAAGTTTGGTGACA+CGG | + | chr3_1:72439647-72439666 | Msa0373430:CDS | 35.0% |
| !! | CTACGAGTTTTAGTATCATC+AGG | + | chr3_1:72439708-72439727 | Msa0373430:CDS | 35.0% |
| !! | CAGTAGCAAGTTTTAATCAG+TGG | + | chr3_1:72439775-72439794 | Msa0373430:CDS | 35.0% |
| CTAGATGAACAAAACGCAAA+TGG | + | chr3_1:72439951-72439970 | Msa0373430:CDS | 35.0% | |
| CTCATAGACTTGAACCAAAA+TGG | + | chr3_1:72440092-72440111 | Msa0373430:CDS | 35.0% | |
| !! | GAAGGGTATTATGATGTGAA+TGG | + | chr3_1:72440260-72440279 | Msa0373430:CDS | 35.0% |
| !!! | GTGAATGGTTTTGATGGAAA+TGG | + | chr3_1:72440275-72440294 | Msa0373430:CDS | 35.0% |
| TTAGCAGCAAGAGAAAGTAA+TGG | + | chr3_1:72440314-72440333 | Msa0373430:CDS | 35.0% | |
| TTCCATCGAAATCTTTCACT+TGG | - | chr3_1:72440635-72440654 | None:intergenic | 35.0% | |
| CAACATCAAACTTCTTCCTA+CGG | - | chr3_1:72440658-72440677 | None:intergenic | 35.0% | |
| !! | TGCATTTTGTTTGTGAAGGT+GGG | + | chr3_1:72440723-72440742 | Msa0373430:CDS | 35.0% |
| !! | GTAACAAGAGAAGCCATTTT+TGG | + | chr3_1:72440785-72440804 | Msa0373430:CDS | 35.0% |
| !! | TTTGGTTCTAGAGCTAATAC+TGG | + | chr3_1:72440803-72440822 | Msa0373430:CDS | 35.0% |
| ATGTTTAGCGAATCCATTGG+TGG | + | chr3_1:72436401-72436420 | Msa0373430:CDS | 40.0% | |
| ! | AAGCACGATCTCCATTGTTT+TGG | - | chr3_1:72436460-72436479 | None:intergenic | 40.0% |
| ATAAGGCAGAACATTCGGAA+CGG | - | chr3_1:72436605-72436624 | None:intergenic | 40.0% | |
| CAGATAAACTGCAGCTTAGT+AGG | + | chr3_1:72436784-72436803 | Msa0373430:intron | 40.0% | |
| ATGATTGCATTTGTCGTGTC+CGG | + | chr3_1:72436838-72436857 | Msa0373430:intron | 40.0% | |
| ATGAGTTTCATGCACAGAGA+TGG | - | chr3_1:72436893-72436912 | None:intergenic | 40.0% | |
| CATGTATGGAACTATGTCAG+GGG | + | chr3_1:72437239-72437258 | Msa0373430:intron | 40.0% | |
| GTAAATGTGAGATTGTTCCG+GGG | + | chr3_1:72437657-72437676 | Msa0373430:CDS | 40.0% | |
| GATGAGTACATCAACAACCT+CGG | - | chr3_1:72437895-72437914 | None:intergenic | 40.0% | |
| GGTTGTTGATGTACTCATCA+AGG | + | chr3_1:72437896-72437915 | Msa0373430:CDS | 40.0% | |
| !!! | CTAGTGTATGTCCGCTTTTT+TGG | + | chr3_1:72437936-72437955 | Msa0373430:intron | 40.0% |
| GACGTGTCAGACACTAAATA+TGG | + | chr3_1:72438081-72438100 | Msa0373430:intron | 40.0% | |
| CTTTGAACTTTGACTGACAG+AGG | - | chr3_1:72438110-72438129 | None:intergenic | 40.0% | |
| GACGTGTCAGACACTAAATA+TGG | + | chr3_1:72438081-72438100 | Msa0373430:intron | 40.0% | |
| AGAGACTAGACTTTGAACCT+TGG | - | chr3_1:72438198-72438217 | None:intergenic | 40.0% | |
| ! | ACGTAGGGGTTACCAAATTT+TGG | - | chr3_1:72438389-72438408 | None:intergenic | 40.0% |
| TGGAGTGGATGTTAATGCAA+TGG | + | chr3_1:72438540-72438559 | Msa0373430:CDS | 40.0% | |
| ! | CAATGCATTATTTGCTGCTG+TGG | + | chr3_1:72438615-72438634 | Msa0373430:CDS | 40.0% |
| TGTAGTTAGACTACTGTTGC+AGG | + | chr3_1:72438654-72438673 | Msa0373430:CDS | 40.0% | |
| TGGGCATGTCATTATCATCA+TGG | + | chr3_1:72438810-72438829 | Msa0373430:intron | 40.0% | |
| TGGTGTGTGGATAATTTGGT+TGG | + | chr3_1:72438974-72438993 | Msa0373430:intron | 40.0% | |
| TGTGTGGATAATTTGGTTGG+TGG | + | chr3_1:72438977-72438996 | Msa0373430:intron | 40.0% | |
| GTTTCATAGTCTGTCGATCA+GGG | - | chr3_1:72439003-72439022 | None:intergenic | 40.0% | |
| TCTGATTTCTGCAATCAGGT+TGG | + | chr3_1:72439237-72439256 | Msa0373430:intron | 40.0% | |
| TCAAGGTCAAATTAGGAGCT+TGG | + | chr3_1:72439274-72439293 | Msa0373430:CDS | 40.0% | |
| TCAAATTAGGAGCTTGGTCT+TGG | + | chr3_1:72439280-72439299 | Msa0373430:CDS | 40.0% | |
| ! | CAAATTAGGAGCTTGGTCTT+GGG | + | chr3_1:72439281-72439300 | Msa0373430:CDS | 40.0% |
| ACAGGAGAAGAATTTCGTGT+AGG | + | chr3_1:72439312-72439331 | Msa0373430:CDS | 40.0% | |
| GAAGAATTTCGTGTAGGTGT+TGG | + | chr3_1:72439318-72439337 | Msa0373430:CDS | 40.0% | |
| CATGTTGAGTATAGTACCAG+TGG | - | chr3_1:72439394-72439413 | None:intergenic | 40.0% | |
| TGTGGAAACTATTAGGTGAC+AGG | - | chr3_1:72439428-72439447 | None:intergenic | 40.0% | |
| ! | CATTGTTACACATGATGGTG+TGG | - | chr3_1:72439470-72439489 | None:intergenic | 40.0% |
| CATGTGAATAGGGTGTACAT+TGG | - | chr3_1:72439562-72439581 | None:intergenic | 40.0% | |
| CAATGTACACCCTATTCACA+TGG | + | chr3_1:72439560-72439579 | Msa0373430:CDS | 40.0% | |
| !! | CGGCATTGATGATTTGTACA+AGG | + | chr3_1:72439667-72439686 | Msa0373430:CDS | 40.0% |
| TTGGGGATAGTAAATTCGTC+CGG | + | chr3_1:72439738-72439757 | Msa0373430:CDS | 40.0% | |
| ! | TTCAAGGTACTTCTTCATGC+TGG | + | chr3_1:72440020-72440039 | Msa0373430:CDS | 40.0% |
| TCTCTTGCTGCTAACATCAA+TGG | - | chr3_1:72440308-72440327 | None:intergenic | 40.0% | |
| ACAAAGGAAATGATGCAGAG+CGG | + | chr3_1:72440429-72440448 | Msa0373430:CDS | 40.0% | |
| GCTAGAATAGTAGTGTTGTG+TGG | + | chr3_1:72440470-72440489 | Msa0373430:CDS | 40.0% | |
| GTCGCCACATAAGAAACAAT+TGG | + | chr3_1:72440529-72440548 | Msa0373430:CDS | 40.0% | |
| ! | TGCTGCTGGAATTTTACGTT+GGG | + | chr3_1:72440562-72440581 | Msa0373430:CDS | 40.0% |
| ! | TGTTGTTTGTAAAGAGGCTG+AGG | + | chr3_1:72440604-72440623 | Msa0373430:CDS | 40.0% |
| GACCAAGTGAAAGATTTCGA+TGG | + | chr3_1:72440630-72440649 | Msa0373430:CDS | 40.0% | |
| AAAGATTTCGATGGAACCGT+AGG | + | chr3_1:72440639-72440658 | Msa0373430:CDS | 40.0% | |
| !! | GAGGTGCATTTTGTTTGTGA+AGG | + | chr3_1:72440719-72440738 | Msa0373430:CDS | 40.0% |
| !! | GTGCATTTTGTTTGTGAAGG+TGG | + | chr3_1:72440722-72440741 | Msa0373430:CDS | 40.0% |
| !! | GCATTTTGTTTGTGAAGGTG+GGG | + | chr3_1:72440724-72440743 | Msa0373430:CDS | 40.0% |
| GGTTGAAATGGCTGAGTTAT+GGG | + | chr3_1:72440745-72440764 | Msa0373430:CDS | 40.0% | |
| TGTTTCCTTAGCCCTGTACT+AGG | - | chr3_1:72436297-72436316 | None:intergenic | 45.0% | |
| ! | TGAGGTCACTGCTCTGTTTT+TGG | + | chr3_1:72436530-72436549 | Msa0373430:CDS | 45.0% |
| !!! | CTGTTTTTGGCTGCACATTC+TGG | + | chr3_1:72436543-72436562 | Msa0373430:CDS | 45.0% |
| GACTCTAATTCGTAAGCTGC+TGG | + | chr3_1:72436572-72436591 | Msa0373430:CDS | 45.0% | |
| TAGCTTAGACGTCCAGATTG+TGG | + | chr3_1:72437197-72437216 | Msa0373430:intron | 45.0% | |
| AGCTTAGACGTCCAGATTGT+GGG | + | chr3_1:72437198-72437217 | Msa0373430:intron | 45.0% | |
| ATCCAACCAAACCCACAATC+TGG | - | chr3_1:72437212-72437231 | None:intergenic | 45.0% | |
| TTGGAGGTCCTTATCAATGG+TGG | + | chr3_1:72437723-72437742 | Msa0373430:CDS | 45.0% | |
| TGGAGGTCCTTATCAATGGT+GGG | + | chr3_1:72437724-72437743 | Msa0373430:CDS | 45.0% | |
| CATGTATTGCAACACGAGGA+CGG | - | chr3_1:72437842-72437861 | None:intergenic | 45.0% | |
| TCTGCAACAAGCAGAGACAA+GGG | - | chr3_1:72437865-72437884 | None:intergenic | 45.0% | |
| ! | ATGGATAGCTCTATCAGCCA+AGG | + | chr3_1:72438178-72438197 | Msa0373430:intron | 45.0% |
| TCACTAGACCCAACTCCTAT+TGG | + | chr3_1:72438219-72438238 | Msa0373430:intron | 45.0% | |
| ! | TCTTGGGTTTGTTTGCAGCA+TGG | + | chr3_1:72438520-72438539 | Msa0373430:intron | 45.0% |
| AGTTAGACTACTGTTGCAGG+TGG | + | chr3_1:72438657-72438676 | Msa0373430:intron | 45.0% | |
| GTTAGACTACTGTTGCAGGT+GGG | + | chr3_1:72438658-72438677 | Msa0373430:intron | 45.0% | |
| TTAGACTACTGTTGCAGGTG+GGG | + | chr3_1:72438659-72438678 | Msa0373430:intron | 45.0% | |
| CTCTTAGACCCAACACTGTT+CGG | + | chr3_1:72438949-72438968 | Msa0373430:intron | 45.0% | |
| !! | GGCTTGGTGTGTGGATAATT+TGG | + | chr3_1:72438970-72438989 | Msa0373430:intron | 45.0% |
| GGTTTCATAGTCTGTCGATC+AGG | - | chr3_1:72439004-72439023 | None:intergenic | 45.0% | |
| ! | TGGTCTTGGGAAACAGATAC+AGG | + | chr3_1:72439294-72439313 | Msa0373430:CDS | 45.0% |
| ! | CTGAGCCTTATCCAATCACA+TGG | + | chr3_1:72439346-72439365 | Msa0373430:CDS | 45.0% |
| GCACACCATGTGATTGGATA+AGG | - | chr3_1:72439354-72439373 | None:intergenic | 45.0% | |
| TCTACAGCACACCATGTGAT+TGG | - | chr3_1:72439360-72439379 | None:intergenic | 45.0% | |
| GCAAGAGAGTTCTTCCAATG+TGG | - | chr3_1:72439446-72439465 | None:intergenic | 45.0% | |
| AGTATCATCAGGAGCTGACT+TGG | + | chr3_1:72439719-72439738 | Msa0373430:CDS | 45.0% | |
| ! | GTATCATCAGGAGCTGACTT+GGG | + | chr3_1:72439720-72439739 | Msa0373430:CDS | 45.0% |
| !! | TATCATCAGGAGCTGACTTG+GGG | + | chr3_1:72439721-72439740 | Msa0373430:CDS | 45.0% |
| TACTGAAGTTGCGCAATGAC+CGG | - | chr3_1:72439760-72439779 | None:intergenic | 45.0% | |
| TGTCTCCATAACAAGCTGCT+CGG | - | chr3_1:72440214-72440233 | None:intergenic | 45.0% | |
| CAAAGGAAATGATGCAGAGC+GGG | + | chr3_1:72440430-72440449 | Msa0373430:CDS | 45.0% | |
| !! | TTGGTAATGATTGGTGCTGC+TGG | + | chr3_1:72440548-72440567 | Msa0373430:CDS | 45.0% |
| !! | GTGCTGCTGGAATTTTACGT+TGG | + | chr3_1:72440561-72440580 | Msa0373430:CDS | 45.0% |
| ! | GCTGCTGGAATTTTACGTTG+GGG | + | chr3_1:72440563-72440582 | Msa0373430:CDS | 45.0% |
| ! | CTGCTGGAATTTTACGTTGG+GGG | + | chr3_1:72440564-72440583 | Msa0373430:CDS | 45.0% |
| GTTTGTAAAGAGGCTGAGGT+AGG | + | chr3_1:72440608-72440627 | Msa0373430:CDS | 45.0% | |
| TTGTGAAGGTGGGGTTGAAA+TGG | + | chr3_1:72440733-72440752 | Msa0373430:CDS | 45.0% | |
| GGGTTGAAATGGCTGAGTTA+TGG | + | chr3_1:72440744-72440763 | Msa0373430:CDS | 45.0% | |
| ATGGCTGAGTTATGGGTAAG+AGG | + | chr3_1:72440752-72440771 | Msa0373430:CDS | 45.0% | |
| TGGCTGAGTTATGGGTAAGA+GGG | + | chr3_1:72440753-72440772 | Msa0373430:CDS | 45.0% | |
| ! | CGTTGGTGAGTCCTAGTACA+GGG | + | chr3_1:72436283-72436302 | Msa0373430:CDS | 50.0% |
| TGAGTCCTAGTACAGGGCTA+AGG | + | chr3_1:72436289-72436308 | Msa0373430:CDS | 50.0% | |
| CTTGTTGATGCAGCTCATCG+CGG | + | chr3_1:72436357-72436376 | Msa0373430:CDS | 50.0% | |
| ATGCACACTCAGACACACAC+CGG | - | chr3_1:72436860-72436879 | None:intergenic | 50.0% | |
| AGACGTCCAGATTGTGGGTT+TGG | + | chr3_1:72437203-72437222 | Msa0373430:intron | 50.0% | |
| ! | GTCCAGATTGTGGGTTTGGT+TGG | + | chr3_1:72437207-72437226 | Msa0373430:intron | 50.0% |
| ATGCTACAACAGCAGCAGTG+AGG | + | chr3_1:72437682-72437701 | Msa0373430:CDS | 50.0% | |
| TGCTACAACAGCAGCAGTGA+GGG | + | chr3_1:72437683-72437702 | Msa0373430:CDS | 50.0% | |
| GGAGGTCCTTATCAATGGTG+GGG | + | chr3_1:72437725-72437744 | Msa0373430:CDS | 50.0% | |
| AACACGAGGACGGATCATGT+TGG | - | chr3_1:72437832-72437851 | None:intergenic | 50.0% | |
| AGGGCATGTATTGCAACACG+AGG | - | chr3_1:72437846-72437865 | None:intergenic | 50.0% | |
| CTCTGCAACAAGCAGAGACA+AGG | - | chr3_1:72437866-72437885 | None:intergenic | 50.0% | |
| ! | CTTGTCTCTGCTTGTTGCAG+AGG | + | chr3_1:72437864-72437883 | Msa0373430:CDS | 50.0% |
| TTGTTGCAGAGGATTCACCG+AGG | + | chr3_1:72437875-72437894 | Msa0373430:CDS | 50.0% | |
| ! | GGTTTGTTTGCAGCATGGAG+TGG | + | chr3_1:72438525-72438544 | Msa0373430:intron | 50.0% |
| ! | TATTTGCTGCTGTGGTCAGC+AGG | + | chr3_1:72438623-72438642 | Msa0373430:CDS | 50.0% |
| ! | CGAACAGTGTTGGGTCTAAG+AGG | - | chr3_1:72438951-72438970 | None:intergenic | 50.0% |
| ACACCAAGCCGAACAGTGTT+GGG | - | chr3_1:72438960-72438979 | None:intergenic | 50.0% | |
| CACTCGAGCGAATGACATAG+AGG | + | chr3_1:72439893-72439912 | Msa0373430:CDS | 50.0% | |
| GGGTAACGTGGAAGCTTTCA+AGG | + | chr3_1:72440004-72440023 | Msa0373430:CDS | 50.0% | |
| ! | TAACAAGCTGCTCGGTGAAG+AGG | - | chr3_1:72440206-72440225 | None:intergenic | 50.0% |
| !! | CTTCACCGAGCAGCTTGTTA+TGG | + | chr3_1:72440206-72440225 | Msa0373430:CDS | 50.0% |
| ! | GCGTTGGTGAGTCCTAGTAC+AGG | + | chr3_1:72436282-72436301 | Msa0373430:CDS | 55.0% |
| CTGCTGTTGTAGCATAGCCC+CGG | - | chr3_1:72437677-72437696 | None:intergenic | 55.0% | |
| ACAACAGCAGCAGTGAGGGA+AGG | + | chr3_1:72437687-72437706 | Msa0373430:CDS | 55.0% | |
| GTCGCAACTTGCATGCGAAG+AGG | + | chr3_1:72437749-72437768 | Msa0373430:CDS | 55.0% | |
| AGACCCAACACTGTTCGGCT+TGG | + | chr3_1:72438954-72438973 | Msa0373430:intron | 55.0% | |
| CACACCAAGCCGAACAGTGT+TGG | - | chr3_1:72438961-72438980 | None:intergenic | 55.0% | |
| !! | ACACTGTTCGGCTTGGTGTG+TGG | + | chr3_1:72438961-72438980 | Msa0373430:intron | 55.0% |
| GTCGCGCAGCCATGTGAATA+GGG | - | chr3_1:72439572-72439591 | None:intergenic | 55.0% | |
| AGTCGCGCAGCCATGTGAAT+AGG | - | chr3_1:72439573-72439592 | None:intergenic | 55.0% | |
| ATTCACATGGCTGCGCGACT+TGG | + | chr3_1:72439573-72439592 | Msa0373430:CDS | 55.0% | |
| TGTCATGATAGCTGCCGCAG+AGG | + | chr3_1:72439983-72440002 | Msa0373430:CDS | 55.0% | |
| GTCATGATAGCTGCCGCAGA+GGG | + | chr3_1:72439984-72440003 | Msa0373430:CDS | 55.0% | |
| AGCTTCCACGTTACCCTCTG+CGG | - | chr3_1:72440000-72440019 | None:intergenic | 55.0% | |
| TCGGTGAAGAGGATTCCCCT+CGG | - | chr3_1:72440195-72440214 | None:intergenic | 55.0% | |
| GCGACGCCCCACCATTGATA+AGG | - | chr3_1:72437734-72437753 | None:intergenic | 60.0% | |
| AGCTGCCGCAGAGGGTAACG+TGG | + | chr3_1:72439992-72440011 | Msa0373430:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 72436279 | 72440829 | 72436279 | ID=Msa0373430;Name=Msa0373430 |
| chr3_1 | mRNA | 72436279 | 72440829 | 72436279 | ID=Msa0373430-mRNA-1;Parent=Msa0373430;Name=Msa0373430-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|767 |
| chr3_1 | exon | 72436279 | 72436593 | 72436279 | ID=Msa0373430-mRNA-1:exon:16167;Parent=Msa0373430-mRNA-1 |
| chr3_1 | exon | 72437642 | 72437917 | 72437642 | ID=Msa0373430-mRNA-1:exon:16168;Parent=Msa0373430-mRNA-1 |
| chr3_1 | exon | 72438538 | 72438675 | 72438538 | ID=Msa0373430-mRNA-1:exon:16169;Parent=Msa0373430-mRNA-1 |
| chr3_1 | exon | 72439255 | 72440829 | 72439255 | ID=Msa0373430-mRNA-1:exon:16170;Parent=Msa0373430-mRNA-1 |
| chr3_1 | CDS | 72436279 | 72436593 | 72436279 | ID=Msa0373430-mRNA-1:cds;Parent=Msa0373430-mRNA-1 |
| chr3_1 | CDS | 72437642 | 72437917 | 72437642 | ID=Msa0373430-mRNA-1:cds;Parent=Msa0373430-mRNA-1 |
| chr3_1 | CDS | 72438538 | 72438675 | 72438538 | ID=Msa0373430-mRNA-1:cds;Parent=Msa0373430-mRNA-1 |
| chr3_1 | CDS | 72439255 | 72440829 | 72439255 | ID=Msa0373430-mRNA-1:cds;Parent=Msa0373430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
