Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480020 | XP_003601810.1 | 97.653 | 767 | 18 | 0 | 1 | 767 | 2 | 768 | 0.0 | 1538 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480020 | sp|Q12955|ANK3_HUMAN | 24.407 | 590 | 351 | 17 | 85 | 632 | 268 | 804 | 2.46e-27 | 123 |
| Msa0480020 | sp|Q12955|ANK3_HUMAN | 23.955 | 718 | 440 | 21 | 30 | 671 | 48 | 735 | 1.30e-25 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480020 | G7JC18 | 97.653 | 767 | 18 | 0 | 1 | 767 | 2 | 768 | 0.0 | 1538 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373430 | Msa0480020 | 0.987376 | 4.923863e-170 | -8.615850e-47 |
| Msa0421990 | Msa0480020 | 0.959175 | 3.743641e-117 | -8.615850e-47 |
| Msa0480020 | Msa0514400 | 0.925611 | 1.451949e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480020 | MtrunA17_Chr3g0122751 | 97.653 | 767 | 18 | 0 | 1 | 767 | 2 | 768 | 0.0 | 1538 |
| Msa0480020 | MtrunA17_Chr7g0226271 | 58.445 | 746 | 300 | 6 | 12 | 756 | 7 | 743 | 0.0 | 851 |
| Msa0480020 | MtrunA17_Chr6g0461061 | 23.510 | 302 | 184 | 9 | 281 | 549 | 167 | 454 | 6.00e-12 | 68.9 |
| Msa0480020 | MtrunA17_Chr5g0418551 | 33.562 | 146 | 88 | 4 | 483 | 628 | 90 | 226 | 5.70e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480020 | AT5G14230.1 | 54.594 | 751 | 328 | 7 | 12 | 761 | 7 | 745 | 0.0 | 780 |
| Msa0480020 | AT5G14230.2 | 53.769 | 597 | 263 | 7 | 166 | 761 | 1 | 585 | 0.0 | 593 |
Find 138 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGAATATGCCCTTAAAA+AGG | 0.174977 | 3_3:+85200439 | Msa0480020:CDS |
| ATTCTTCGGTGTTTGATTAA+TGG | 0.185908 | 3_3:+85199900 | Msa0480020:CDS |
| CTTCCAATGTGGAAACTATT+AGG | 0.253098 | 3_3:-85199726 | None:intergenic |
| GGAAGGCCATTTGAAAATAT+TGG | 0.260482 | 3_3:+85197998 | Msa0480020:CDS |
| CTAGATATCAAGGTCAAATT+AGG | 0.280904 | 3_3:+85199561 | Msa0480020:CDS |
| GAACCAAAATGGTGAAAATA+AGG | 0.285531 | 3_3:+85200397 | Msa0480020:CDS |
| AGTTTATCAGAAAGCAATTC+TGG | 0.286349 | 3_3:+85200097 | Msa0480020:CDS |
| AAGCACGATCTCCATTGTTT+TGG | 0.289357 | 3_3:-85196750 | None:intergenic |
| CTCATAGACTTGAACCAAAA+TGG | 0.291322 | 3_3:+85200386 | Msa0480020:CDS |
| AAGTTTGATGTTGATGAGTT+AGG | 0.314790 | 3_3:+85200959 | Msa0480020:CDS |
| CTTCACCGAGCAGCTTGTTA+TGG | 0.321590 | 3_3:+85200500 | Msa0480020:CDS |
| TTGGTGGATGTTAACTTCAT+TGG | 0.328128 | 3_3:+85196710 | Msa0480020:CDS |
| TCAAATTAGGAGCTTGGTCT+TGG | 0.331293 | 3_3:+85199574 | Msa0480020:CDS |
| TTGGACTCACAAACAAAGTT+TGG | 0.355546 | 3_3:+85199933 | Msa0480020:CDS |
| TTTGGTTCTAGAGCTAATAC+TGG | 0.362349 | 3_3:+85201097 | Msa0480020:CDS |
| GTTCATCTAGATTTATATTC+CGG | 0.369226 | 3_3:-85200232 | None:intergenic |
| GGGTTGAAATGGCTGAGTTA+TGG | 0.373265 | 3_3:+85201038 | Msa0480020:CDS |
| TGTAAATGTGAGATTGTTCC+GGG | 0.373790 | 3_3:+85197950 | Msa0480020:CDS |
| ATCTCTGTTTCGTAGTCAAT+TGG | 0.376161 | 3_3:-85196617 | None:intergenic |
| ATGTAAATGTGAGATTGTTC+CGG | 0.388075 | 3_3:+85197949 | Msa0480020:CDS |
| AGTCGCGCAGCCATGTGAAT+AGG | 0.389655 | 3_3:-85199864 | None:intergenic |
| TTGGATCATGCAACATTCTT+CGG | 0.392048 | 3_3:+85199886 | Msa0480020:CDS |
| GGTTGAAATGGCTGAGTTAT+GGG | 0.394310 | 3_3:+85201039 | Msa0480020:CDS |
| TGTAGTTAGACTACTGTTGC+AGG | 0.401334 | 3_3:+85198948 | Msa0480020:CDS |
| ATTCACATGGCTGCGCGACT+TGG | 0.408350 | 3_3:+85199867 | Msa0480020:CDS |
| ATGGCTGAGTTATGGGTAAG+AGG | 0.413141 | 3_3:+85201046 | Msa0480020:CDS |
| TGTTTCCTTAGCCCTGTACT+AGG | 0.421197 | 3_3:-85196587 | None:intergenic |
| ATTACCAATTGTTTCTTATG+TGG | 0.423272 | 3_3:-85200827 | None:intergenic |
| TGGCTGAGTTATGGGTAAGA+GGG | 0.432048 | 3_3:+85201047 | Msa0480020:CDS |
| TTGTGAAGGTGGGGTTGAAA+TGG | 0.432096 | 3_3:+85201027 | Msa0480020:CDS |
| AAGAAACAATTGGTAATGAT+TGG | 0.433525 | 3_3:+85200833 | Msa0480020:CDS |
| GTCGCGCAGCCATGTGAATA+GGG | 0.441194 | 3_3:-85199863 | None:intergenic |
| TTCAAGGTACTTCTTCATGC+TGG | 0.441197 | 3_3:+85200314 | Msa0480020:CDS |
| AAGAAATGTTGTTTGTAAAG+AGG | 0.443386 | 3_3:+85200892 | Msa0480020:CDS |
| TATTTGCTGCTGTGGTCAGC+AGG | 0.443955 | 3_3:+85198917 | Msa0480020:CDS |
| CTTGTCTCTGCTTGTTGCAG+AGG | 0.445183 | 3_3:+85198158 | Msa0480020:CDS |
| AACATACAAAATGTGGTAAA+GGG | 0.451192 | 3_3:+85200801 | Msa0480020:CDS |
| CTAGATGAACAAAACGCAAA+TGG | 0.451756 | 3_3:+85200245 | Msa0480020:CDS |
| TCAACATTAGCGTGAAGAAA+TGG | 0.452245 | 3_3:-85198883 | None:intergenic |
| GGGTAACGTGGAAGCTTTCA+AGG | 0.453069 | 3_3:+85200298 | Msa0480020:CDS |
| AAACATACAAAATGTGGTAA+AGG | 0.454523 | 3_3:+85200800 | Msa0480020:CDS |
| TCTACAGCACACCATGTGAT+TGG | 0.456993 | 3_3:-85199651 | None:intergenic |
| ATTCTGGATATAATTAGATC+TGG | 0.458790 | 3_3:+85200113 | Msa0480020:CDS |
| GACTCTAATTCGTAAGCTGC+TGG | 0.462966 | 3_3:+85196865 | Msa0480020:CDS |
| TCTCTTGCTGCTAACATCAA+TGG | 0.465497 | 3_3:-85200599 | None:intergenic |
| GAAGGGTATTATGATGTGAA+TGG | 0.467144 | 3_3:+85200554 | Msa0480020:CDS |
| CAAATTAGGAGCTTGGTCTT+GGG | 0.472134 | 3_3:+85199575 | Msa0480020:CDS |
| AGTATCATCAGGAGCTGACT+TGG | 0.473154 | 3_3:+85200013 | Msa0480020:CDS |
| GATTAATGGTAAGTGTAACT+TGG | 0.488282 | 3_3:+85199914 | Msa0480020:CDS |
| GAAGAATTTCGTGTAGGTGT+TGG | 0.491534 | 3_3:+85199612 | Msa0480020:CDS |
| GTATCATCAGGAGCTGACTT+GGG | 0.496179 | 3_3:+85200014 | Msa0480020:CDS |
| CGGCATTGATGATTTGTACA+AGG | 0.498203 | 3_3:+85199961 | Msa0480020:CDS |
| TCTTTCATTGTTACACATGA+TGG | 0.498969 | 3_3:-85199766 | None:intergenic |
| TTTAAGTAATGGTGTGGATA+CGG | 0.499496 | 3_3:+85199803 | Msa0480020:CDS |
| TTGGTAATGATTGGTGCTGC+TGG | 0.499601 | 3_3:+85200842 | Msa0480020:CDS |
| GCACACCATGTGATTGGATA+AGG | 0.500807 | 3_3:-85199645 | None:intergenic |
| TACTGAAGTTGCGCAATGAC+CGG | 0.504102 | 3_3:-85200051 | None:intergenic |
| TCAAGGTCAAATTAGGAGCT+TGG | 0.504271 | 3_3:+85199568 | Msa0480020:CDS |
| CAATGCATTATTTGCTGCTG+TGG | 0.507461 | 3_3:+85198909 | Msa0480020:CDS |
| GCGACGCCCCACCATTGATA+AGG | 0.507974 | 3_3:-85198025 | None:intergenic |
| GTATGAAGAGTTTAAAATTG+AGG | 0.511045 | 3_3:+85196805 | Msa0480020:CDS |
| CAAAGGAAATGATGCAGAGC+GGG | 0.513044 | 3_3:+85200724 | Msa0480020:CDS |
| TGGATTCGCTAAACATTCAA+TGG | 0.514214 | 3_3:-85196687 | None:intergenic |
| TTCCATCGAAATCTTTCACT+TGG | 0.516599 | 3_3:-85200926 | None:intergenic |
| GTCGCCACATAAGAAACAAT+TGG | 0.518627 | 3_3:+85200823 | Msa0480020:CDS |
| GATATAATTAGATCTGGAAA+AGG | 0.519776 | 3_3:+85200119 | Msa0480020:CDS |
| TGTGGAAACTATTAGGTGAC+AGG | 0.527496 | 3_3:-85199719 | None:intergenic |
| CTCTGCAACAAGCAGAGACA+AGG | 0.528740 | 3_3:-85198157 | None:intergenic |
| TGTTGTTTGTAAAGAGGCTG+AGG | 0.529305 | 3_3:+85200898 | Msa0480020:CDS |
| TGGTCTTGGGAAACAGATAC+AGG | 0.531451 | 3_3:+85199588 | Msa0480020:CDS |
| GCGTTGGTGAGTCCTAGTAC+AGG | 0.537434 | 3_3:+85196575 | Msa0480020:CDS |
| TGCTACAACAGCAGCAGTGA+GGG | 0.545172 | 3_3:+85197977 | Msa0480020:CDS |
| TTACTTGAAGCAAGCTATGT+GGG | 0.546833 | 3_3:+85198068 | Msa0480020:CDS |
| TGGAGGTCCTTATCAATGGT+GGG | 0.547063 | 3_3:+85198018 | Msa0480020:CDS |
| CAACATCAAACTTCTTCCTA+CGG | 0.548005 | 3_3:-85200949 | None:intergenic |
| TCTAGAGCTAATACTGGCTG+AGG | 0.551926 | 3_3:+85201103 | Msa0480020:CDS |
| TGGTGTAAGACTAGATATCA+AGG | 0.554150 | 3_3:+85199551 | Msa0480020:CDS |
| TAACAAGCTGCTCGGTGAAG+AGG | 0.560472 | 3_3:-85200497 | None:intergenic |
| GGTTGTTGATGTACTCATCA+AGG | 0.562299 | 3_3:+85198190 | Msa0480020:CDS |
| AATATTAGTACTTTAACCGA+GGG | 0.563629 | 3_3:+85200470 | Msa0480020:CDS |
| GGTTTGTTTGCAGCATGGAG+TGG | 0.566933 | 3_3:+85198819 | Msa0480020:intron |
| TTGGAGGTCCTTATCAATGG+TGG | 0.567906 | 3_3:+85198017 | Msa0480020:CDS |
| CATTGTTACACATGATGGTG+TGG | 0.569124 | 3_3:-85199761 | None:intergenic |
| ATATTGGAGGTCCTTATCAA+TGG | 0.569895 | 3_3:+85198014 | Msa0480020:CDS |
| TTTACTTGAAGCAAGCTATG+TGG | 0.573064 | 3_3:+85198067 | Msa0480020:CDS |
| GTCATGATAGCTGCCGCAGA+GGG | 0.576593 | 3_3:+85200278 | Msa0480020:CDS |
| TTGGGGATAGTAAATTCGTC+CGG | 0.577097 | 3_3:+85200032 | Msa0480020:CDS |
| GAATATTAGTACTTTAACCG+AGG | 0.578648 | 3_3:+85200469 | Msa0480020:CDS |
| AGGCCATTTGAAAATATTGG+AGG | 0.582676 | 3_3:+85198001 | Msa0480020:CDS |
| AGCTGCCGCAGAGGGTAACG+TGG | 0.588395 | 3_3:+85200286 | Msa0480020:CDS |
| CAATGTACACCCTATTCACA+TGG | 0.589994 | 3_3:+85199854 | Msa0480020:CDS |
| TACACTGAATTTACTCGATG+AGG | 0.593045 | 3_3:-85196785 | None:intergenic |
| GTTTGTAAAGAGGCTGAGGT+AGG | 0.597465 | 3_3:+85200902 | Msa0480020:CDS |
| CACTCGAGCGAATGACATAG+AGG | 0.598935 | 3_3:+85200187 | Msa0480020:CDS |
| CTGCTGTTGTAGCATAGCCC+CGG | 0.599857 | 3_3:-85197968 | None:intergenic |
| TTAGCAGCAAGAGAAAGTAA+TGG | 0.601878 | 3_3:+85200608 | Msa0480020:CDS |
| GGAGGTCCTTATCAATGGTG+GGG | 0.602282 | 3_3:+85198019 | Msa0480020:CDS |
| TGGATGTTAATGCAATGGAT+AGG | 0.603440 | 3_3:+85198839 | Msa0480020:CDS |
| ATGTTTAGCGAATCCATTGG+TGG | 0.603618 | 3_3:+85196694 | Msa0480020:CDS |
| CATGTTGAGTATAGTACCAG+TGG | 0.606160 | 3_3:-85199685 | None:intergenic |
| CTTGCTAGAGAAAATAACAA+AGG | 0.606392 | 3_3:+85200707 | Msa0480020:CDS |
| GATGTTGAAGTCCAAAACAA+TGG | 0.608066 | 3_3:+85196739 | Msa0480020:CDS |
| TGAGTCCTAGTACAGGGCTA+AGG | 0.609927 | 3_3:+85196582 | Msa0480020:CDS |
| TGAATGTTTAGCGAATCCAT+TGG | 0.610245 | 3_3:+85196691 | Msa0480020:CDS |
| TCACCTAATAGTTTCCACAT+TGG | 0.614105 | 3_3:+85199723 | Msa0480020:CDS |
| TATCATCAGGAGCTGACTTG+GGG | 0.619391 | 3_3:+85200015 | Msa0480020:CDS |
| GACCAAGTGAAAGATTTCGA+TGG | 0.625666 | 3_3:+85200924 | Msa0480020:CDS |
| TGGAGTGGATGTTAATGCAA+TGG | 0.627216 | 3_3:+85198834 | Msa0480020:CDS |
| CATGTATTGCAACACGAGGA+CGG | 0.631502 | 3_3:-85198133 | None:intergenic |
| ACAAACAAAGTTTGGTGACA+CGG | 0.631687 | 3_3:+85199941 | Msa0480020:CDS |
| ATGAAGTTAACATCCACCAA+TGG | 0.633936 | 3_3:-85196707 | None:intergenic |
| CATGTGAATAGGGTGTACAT+TGG | 0.634202 | 3_3:-85199853 | None:intergenic |
| ACAACAGCAGCAGTGAGGGA+AGG | 0.634576 | 3_3:+85197981 | Msa0480020:CDS |
| AAAGATTTCGATGGAACCGT+AGG | 0.636964 | 3_3:+85200933 | Msa0480020:CDS |
| GTCGCAACTTGCATGCGAAG+AGG | 0.636970 | 3_3:+85198043 | Msa0480020:CDS |
| TGTCATGATAGCTGCCGCAG+AGG | 0.638941 | 3_3:+85200277 | Msa0480020:CDS |
| CTGAGCCTTATCCAATCACA+TGG | 0.641426 | 3_3:+85199640 | Msa0480020:CDS |
| CGTTGGTGAGTCCTAGTACA+GGG | 0.644162 | 3_3:+85196576 | Msa0480020:CDS |
| TGTCTCCATAACAAGCTGCT+CGG | 0.646022 | 3_3:-85200505 | None:intergenic |
| ACAAAGGAAATGATGCAGAG+CGG | 0.647414 | 3_3:+85200723 | Msa0480020:CDS |
| AACACGAGGACGGATCATGT+TGG | 0.649295 | 3_3:-85198123 | None:intergenic |
| ACAGGAGAAGAATTTCGTGT+AGG | 0.653770 | 3_3:+85199606 | Msa0480020:CDS |
| GCAAGAGAGTTCTTCCAATG+TGG | 0.656913 | 3_3:-85199737 | None:intergenic |
| TCTGCAACAAGCAGAGACAA+GGG | 0.657171 | 3_3:-85198156 | None:intergenic |
| AGCTTCCACGTTACCCTCTG+CGG | 0.660367 | 3_3:-85200291 | None:intergenic |
| CTAGAGCTAATACTGGCTGA+GGG | 0.661333 | 3_3:+85201104 | Msa0480020:CDS |
| GGATGTTAACTTCATTGGAA+CGG | 0.666070 | 3_3:+85196715 | Msa0480020:CDS |
| GATGAGTACATCAACAACCT+CGG | 0.687569 | 3_3:-85198186 | None:intergenic |
| ATGCTACAACAGCAGCAGTG+AGG | 0.688425 | 3_3:+85197976 | Msa0480020:CDS |
| AATTTCATGTGATAGAATGT+GGG | 0.694020 | 3_3:+85197921 | Msa0480020:intron |
| GTGAAGAAACATACAAAATG+TGG | 0.694360 | 3_3:+85200794 | Msa0480020:CDS |
| TCGGTGAAGAGGATTCCCCT+CGG | 0.695815 | 3_3:-85200486 | None:intergenic |
| GCTAGAATAGTAGTGTTGTG+TGG | 0.706489 | 3_3:+85200764 | Msa0480020:CDS |
| CTTGTTGATGCAGCTCATCG+CGG | 0.711378 | 3_3:+85196650 | Msa0480020:CDS |
| ATATTAGTACTTTAACCGAG+GGG | 0.718701 | 3_3:+85200471 | Msa0480020:CDS |
| GTAAATGTGAGATTGTTCCG+GGG | 0.747988 | 3_3:+85197951 | Msa0480020:CDS |
| AGGGCATGTATTGCAACACG+AGG | 0.751125 | 3_3:-85198137 | None:intergenic |
| TTGTTGCAGAGGATTCACCG+AGG | 0.802394 | 3_3:+85198169 | Msa0480020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACTGATTTTTTTTTTTTT+TGG | + | chr3_3:85197309-85197328 | Msa0480020:intron | 10.0% |
| !! | TTATAAACATAATTACATAT+TGG | - | chr3_3:85197462-85197481 | None:intergenic | 10.0% |
| !! | ATATAATTACATTTATTTGA+GGG | - | chr3_3:85198274-85198293 | None:intergenic | 10.0% |
| !! | AATATAATTACATTTATTTG+AGG | - | chr3_3:85198275-85198294 | None:intergenic | 10.0% |
| !!! | TATTTTAATTTGTTAACTTT+TGG | + | chr3_3:85199084-85199103 | Msa0480020:intron | 10.0% |
| !!! | ATTTTAATTTGTTAACTTTT+GGG | + | chr3_3:85199085-85199104 | Msa0480020:intron | 10.0% |
| !! | AAACTAATATTAATCTAATA+CGG | - | chr3_3:85199319-85199338 | None:intergenic | 10.0% |
| !! | TTGAAAAATTATTAAAAGAA+GGG | + | chr3_3:85200537-85200556 | Msa0480020:CDS | 10.0% |
| !! | AAAAAAAGAAAGAAGATAAA+TGG | - | chr3_3:85197623-85197642 | None:intergenic | 15.0% |
| !!! | AATTCAATTTAGAGTTAAAA+GGG | - | chr3_3:85197776-85197795 | None:intergenic | 15.0% |
| !!! | AAATTCAATTTAGAGTTAAA+AGG | - | chr3_3:85197777-85197796 | None:intergenic | 15.0% |
| !! | AAAACTTAGTTAATAATGAA+TGG | - | chr3_3:85197898-85197917 | None:intergenic | 15.0% |
| !!! | ATTCATTATTAACTAAGTTT+TGG | + | chr3_3:85197897-85197916 | Msa0480020:intron | 15.0% |
| !!! | TTCATTATTAACTAAGTTTT+GGG | + | chr3_3:85197898-85197917 | Msa0480020:intron | 15.0% |
| !! | TATAATTACATTTATTTGAG+GGG | - | chr3_3:85198273-85198292 | None:intergenic | 15.0% |
| !! | AATATATTACATTTAGTTGA+GGG | - | chr3_3:85198352-85198371 | None:intergenic | 15.0% |
| !! | ATATGATTATATTTAGTTGA+GGG | - | chr3_3:85198429-85198448 | None:intergenic | 15.0% |
| !! | AATATGATTATATTTAGTTG+AGG | - | chr3_3:85198430-85198449 | None:intergenic | 15.0% |
| !! | TATAATTTATCAAAAAACAG+TGG | + | chr3_3:85198546-85198565 | Msa0480020:intron | 15.0% |
| !!! | GTTATTTGATTTAGTAAAAA+AGG | + | chr3_3:85198607-85198626 | Msa0480020:intron | 15.0% |
| !! | TAGTAATCAATTATATTCAT+AGG | - | chr3_3:85198782-85198801 | None:intergenic | 15.0% |
| !! | TAATAATTGATTAATTGTGT+TGG | + | chr3_3:85199036-85199055 | Msa0480020:intron | 15.0% |
| !!! | TTGAATATACTTTTAAGTAA+TGG | + | chr3_3:85199792-85199811 | Msa0480020:CDS | 15.0% |
| !! | ATCAATCTTAAAAACAAATA+TGG | + | chr3_3:85200347-85200366 | Msa0480020:CDS | 15.0% |
| !!! | AAATAAGGAAAATTTTCATA+AGG | + | chr3_3:85200412-85200431 | Msa0480020:CDS | 15.0% |
| !! | GTTGAAAAATTATTAAAAGA+AGG | + | chr3_3:85200536-85200555 | Msa0480020:CDS | 15.0% |
| !!! | ATTTTCGAAAACACAAAATA+AGG | - | chr3_3:85196915-85196934 | None:intergenic | 20.0% |
| !! | ATATTTCAACAATGTTAGTA+AGG | + | chr3_3:85197361-85197380 | Msa0480020:intron | 20.0% |
| !!! | TTTTTCTATCCTTATTCTTT+CGG | + | chr3_3:85197556-85197575 | Msa0480020:intron | 20.0% |
| !! | TCATAACATTTAAATGTGTT+CGG | - | chr3_3:85197655-85197674 | None:intergenic | 20.0% |
| !! | ACATACACTAGTAATTATAA+TGG | - | chr3_3:85198221-85198240 | None:intergenic | 20.0% |
| !! | ATATATTACATTTAGTTGAG+GGG | - | chr3_3:85198351-85198370 | None:intergenic | 20.0% |
| !! | GAATATATTACATTTAGTTG+AGG | - | chr3_3:85198353-85198372 | None:intergenic | 20.0% |
| !! | TATGATTATATTTAGTTGAG+GGG | - | chr3_3:85198428-85198447 | None:intergenic | 20.0% |
| !! | TTATAAATGATAGAACCAAT+AGG | - | chr3_3:85198531-85198550 | None:intergenic | 20.0% |
| !! | TTATTAAAGAATATACGTAG+GGG | - | chr3_3:85198697-85198716 | None:intergenic | 20.0% |
| !! | CTTATTAAAGAATATACGTA+GGG | - | chr3_3:85198698-85198717 | None:intergenic | 20.0% |
| !! | TCTTATTAAAGAATATACGT+AGG | - | chr3_3:85198699-85198718 | None:intergenic | 20.0% |
| !!! | TGTTTTCTTTCTAAAATTTC+TGG | + | chr3_3:85198723-85198742 | Msa0480020:intron | 20.0% |
| !! | ATAAGTAATAAACTTCACAT+GGG | + | chr3_3:85198987-85199006 | Msa0480020:intron | 20.0% |
| !! | AATGTGATATTAAAAATGAG+AGG | + | chr3_3:85200666-85200685 | Msa0480020:CDS | 20.0% |
| !! | GTATGAAGAGTTTAAAATTG+AGG | + | chr3_3:85196805-85196824 | Msa0480020:CDS | 25.0% |
| !!! | GATTATTTGAAACGTGATTT+TGG | + | chr3_3:85196954-85196973 | Msa0480020:intron | 25.0% |
| ! | GAAAACAGTTAAAAATGTGA+CGG | + | chr3_3:85197212-85197231 | Msa0480020:intron | 25.0% |
| ! | AAAAATCAGTTTAGAAACCA+GGG | - | chr3_3:85197301-85197320 | None:intergenic | 25.0% |
| ! | AAAAAATCAGTTTAGAAACC+AGG | - | chr3_3:85197302-85197321 | None:intergenic | 25.0% |
| ! | AATGTTAGTAAGGCAATAAT+TGG | + | chr3_3:85197371-85197390 | Msa0480020:intron | 25.0% |
| !!! | GTTGGATTTATTTTCATGTA+TGG | + | chr3_3:85197517-85197536 | Msa0480020:intron | 25.0% |
| ! | TTGGATAGAAAGATCAAATA+TGG | - | chr3_3:85197591-85197610 | None:intergenic | 25.0% |
| ! | AGATAAATGGAATTTAGTGT+TGG | - | chr3_3:85197610-85197629 | None:intergenic | 25.0% |
| !! | ATTACTAATTTGTCTGATGT+AGG | + | chr3_3:85197714-85197733 | Msa0480020:intron | 25.0% |
| ! | AATTTCATGTGATAGAATGT+GGG | + | chr3_3:85197921-85197940 | Msa0480020:intron | 25.0% |
| ! | ATGGATACATTTATAAGTCA+AGG | + | chr3_3:85198317-85198336 | Msa0480020:intron | 25.0% |
| ! | ATTTATCAAAAAACAGTGGA+AGG | + | chr3_3:85198550-85198569 | Msa0480020:intron | 25.0% |
| ! | AAAATTGCTACACCAAAATT+TGG | + | chr3_3:85198668-85198687 | Msa0480020:intron | 25.0% |
| !!! | TACTAAATGACACTTTTTCT+TGG | + | chr3_3:85198797-85198816 | Msa0480020:intron | 25.0% |
| !!! | ACTAAATGACACTTTTTCTT+GGG | + | chr3_3:85198798-85198817 | Msa0480020:intron | 25.0% |
| ! | GATAAGTAATAAACTTCACA+TGG | + | chr3_3:85198986-85199005 | Msa0480020:intron | 25.0% |
| ! | AAGCTAAGATATACTATCAA+AGG | - | chr3_3:85199138-85199157 | None:intergenic | 25.0% |
| !! | CCTTACAAATCAATTTTGTA+CGG | - | chr3_3:85199183-85199202 | None:intergenic | 25.0% |
| ! | AAGAGGATATGTTGAAAAAA+GGG | - | chr3_3:85199228-85199247 | None:intergenic | 25.0% |
| ! | TAAGAGGATATGTTGAAAAA+AGG | - | chr3_3:85199229-85199248 | None:intergenic | 25.0% |
| ! | CGTGTTTATAAAGAGAAAAA+AGG | - | chr3_3:85199373-85199392 | None:intergenic | 25.0% |
| !! | TTTTTCTCTTTATAAACACG+TGG | + | chr3_3:85199373-85199392 | Msa0480020:intron | 25.0% |
| !! | TTTTCTCTTTATAAACACGT+GGG | + | chr3_3:85199374-85199393 | Msa0480020:intron | 25.0% |
| !!! | TATACTTTTAAGTAATGGTG+TGG | + | chr3_3:85199797-85199816 | Msa0480020:CDS | 25.0% |
| ! | ATTCTGGATATAATTAGATC+TGG | + | chr3_3:85200113-85200132 | Msa0480020:CDS | 25.0% |
| ! | GATATAATTAGATCTGGAAA+AGG | + | chr3_3:85200119-85200138 | Msa0480020:CDS | 25.0% |
| ! | GTTCATCTAGATTTATATTC+CGG | - | chr3_3:85200235-85200254 | None:intergenic | 25.0% |
| !!! | TTTCCTTATTTTCACCATTT+TGG | - | chr3_3:85200403-85200422 | None:intergenic | 25.0% |
| ! | TTTGAATATGCCCTTAAAAA+GGG | + | chr3_3:85200440-85200459 | Msa0480020:CDS | 25.0% |
| ! | AATATTAGTACTTTAACCGA+GGG | + | chr3_3:85200470-85200489 | Msa0480020:CDS | 25.0% |
| !!! | TGTGAGATTTTGATATCTTA+CGG | + | chr3_3:85200638-85200657 | Msa0480020:CDS | 25.0% |
| ! | AAACATACAAAATGTGGTAA+AGG | + | chr3_3:85200800-85200819 | Msa0480020:CDS | 25.0% |
| ! | AACATACAAAATGTGGTAAA+GGG | + | chr3_3:85200801-85200820 | Msa0480020:CDS | 25.0% |
| !! | ATTACCAATTGTTTCTTATG+TGG | - | chr3_3:85200830-85200849 | None:intergenic | 25.0% |
| !!! | AAGAAACAATTGGTAATGAT+TGG | + | chr3_3:85200833-85200852 | Msa0480020:CDS | 25.0% |
| !! | AAGAAATGTTGTTTGTAAAG+AGG | + | chr3_3:85200892-85200911 | Msa0480020:CDS | 25.0% |
| ! | TGTTGTTACTGCAAAAAATA+AGG | + | chr3_3:85200991-85201010 | Msa0480020:CDS | 25.0% |
| ACAAAATAAGGCAGAACATT+CGG | - | chr3_3:85196903-85196922 | None:intergenic | 30.0% | |
| GATTACAACAGTGATAATCA+TGG | - | chr3_3:85196980-85196999 | None:intergenic | 30.0% | |
| TCACATGTCATTGATACATT+GGG | - | chr3_3:85197264-85197283 | None:intergenic | 30.0% | |
| TTCACATGTCATTGATACAT+TGG | - | chr3_3:85197265-85197284 | None:intergenic | 30.0% | |
| AAAATCAGTTTAGAAACCAG+GGG | - | chr3_3:85197300-85197319 | None:intergenic | 30.0% | |
| TCCTTATTCTTTCGGATAAT+TGG | + | chr3_3:85197564-85197583 | Msa0480020:intron | 30.0% | |
| ACCAATTATCCGAAAGAATA+AGG | - | chr3_3:85197568-85197587 | None:intergenic | 30.0% | |
| AGAGTTAAAAGGGTAATTCA+TGG | - | chr3_3:85197766-85197785 | None:intergenic | 30.0% | |
| GAATTTCATGTGATAGAATG+TGG | + | chr3_3:85197920-85197939 | Msa0480020:intron | 30.0% | |
| ATGTAAATGTGAGATTGTTC+CGG | + | chr3_3:85197949-85197968 | Msa0480020:CDS | 30.0% | |
| GTAGATGATATCCAAAAAAG+CGG | - | chr3_3:85198244-85198263 | None:intergenic | 30.0% | |
| ATGGGATAATAAACATGTCT+AGG | + | chr3_3:85199005-85199024 | Msa0480020:intron | 30.0% | |
| !! | CTTAGCTTTAACATATTGTC+TGG | + | chr3_3:85199150-85199169 | Msa0480020:intron | 30.0% |
| !! | CCGTACAAAATTGATTTGTA+AGG | + | chr3_3:85199180-85199199 | Msa0480020:intron | 30.0% |
| ! | TATTAACCGATCTCTAAAAG+AGG | + | chr3_3:85199499-85199518 | Msa0480020:intron | 30.0% |
| !! | TTAGTTCCTCTTTTAGAGAT+CGG | - | chr3_3:85199508-85199527 | None:intergenic | 30.0% |
| ! | ATTTTCTGATTTCTGCAATC+AGG | + | chr3_3:85199527-85199546 | Msa0480020:intron | 30.0% |
| CTAGATATCAAGGTCAAATT+AGG | + | chr3_3:85199561-85199580 | Msa0480020:CDS | 30.0% | |
| TCTTTCATTGTTACACATGA+TGG | - | chr3_3:85199769-85199788 | None:intergenic | 30.0% | |
| TTTAAGTAATGGTGTGGATA+CGG | + | chr3_3:85199803-85199822 | Msa0480020:CDS | 30.0% | |
| !! | ATTCTTCGGTGTTTGATTAA+TGG | + | chr3_3:85199900-85199919 | Msa0480020:CDS | 30.0% |
| GATTAATGGTAAGTGTAACT+TGG | + | chr3_3:85199914-85199933 | Msa0480020:CDS | 30.0% | |
| AGTTTATCAGAAAGCAATTC+TGG | + | chr3_3:85200097-85200116 | Msa0480020:CDS | 30.0% | |
| TGAAAAAACTCATCGAATAC+CGG | + | chr3_3:85200213-85200232 | Msa0480020:CDS | 30.0% | |
| GAACCAAAATGGTGAAAATA+AGG | + | chr3_3:85200397-85200416 | Msa0480020:CDS | 30.0% | |
| GTTTGAATATGCCCTTAAAA+AGG | + | chr3_3:85200439-85200458 | Msa0480020:CDS | 30.0% | |
| ! | ATTCAGACATCCCTTTTTAA+GGG | - | chr3_3:85200453-85200472 | None:intergenic | 30.0% |
| ! | TATTCAGACATCCCTTTTTA+AGG | - | chr3_3:85200454-85200473 | None:intergenic | 30.0% |
| GAATATTAGTACTTTAACCG+AGG | + | chr3_3:85200469-85200488 | Msa0480020:CDS | 30.0% | |
| ATATTAGTACTTTAACCGAG+GGG | + | chr3_3:85200471-85200490 | Msa0480020:CDS | 30.0% | |
| !!! | TATGATGTGAATGGTTTTGA+TGG | + | chr3_3:85200563-85200582 | Msa0480020:CDS | 30.0% |
| CTTGCTAGAGAAAATAACAA+AGG | + | chr3_3:85200707-85200726 | Msa0480020:CDS | 30.0% | |
| GTGAAGAAACATACAAAATG+TGG | + | chr3_3:85200794-85200813 | Msa0480020:CDS | 30.0% | |
| ! | AAGTTTGATGTTGATGAGTT+AGG | + | chr3_3:85200959-85200978 | Msa0480020:CDS | 30.0% |
| TGTTACTGCAAAAAATAAGG+AGG | + | chr3_3:85200994-85201013 | Msa0480020:CDS | 30.0% | |
| !! | ATTAGCTCTAGAACCAAAAA+TGG | - | chr3_3:85201095-85201114 | None:intergenic | 30.0% |
| ATCTCTGTTTCGTAGTCAAT+TGG | - | chr3_3:85196620-85196639 | None:intergenic | 35.0% | |
| TGGATTCGCTAAACATTCAA+TGG | - | chr3_3:85196690-85196709 | None:intergenic | 35.0% | |
| TGAATGTTTAGCGAATCCAT+TGG | + | chr3_3:85196691-85196710 | Msa0480020:CDS | 35.0% | |
| ATGAAGTTAACATCCACCAA+TGG | - | chr3_3:85196710-85196729 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGTTAACTTCAT+TGG | + | chr3_3:85196710-85196729 | Msa0480020:CDS | 35.0% |
| GGATGTTAACTTCATTGGAA+CGG | + | chr3_3:85196715-85196734 | Msa0480020:CDS | 35.0% | |
| GATGTTGAAGTCCAAAACAA+TGG | + | chr3_3:85196739-85196758 | Msa0480020:CDS | 35.0% | |
| TACACTGAATTTACTCGATG+AGG | - | chr3_3:85196788-85196807 | None:intergenic | 35.0% | |
| ! | TTCAATTTTGTGATTGCGCT+TGG | + | chr3_3:85197007-85197026 | Msa0480020:intron | 35.0% |
| AGCTGCAGTTTATCTGAAAA+CGG | - | chr3_3:85197073-85197092 | None:intergenic | 35.0% | |
| ! | TCAATTTAGCTCATCGTGAT+CGG | + | chr3_3:85197101-85197120 | Msa0480020:intron | 35.0% |
| ! | TGAATTTTCTTCTTTTCCCC+TGG | + | chr3_3:85197281-85197300 | Msa0480020:intron | 35.0% |
| TTCATGTATGGAACTATGTC+AGG | + | chr3_3:85197529-85197548 | Msa0480020:intron | 35.0% | |
| TCATGTATGGAACTATGTCA+GGG | + | chr3_3:85197530-85197549 | Msa0480020:intron | 35.0% | |
| TGTAAATGTGAGATTGTTCC+GGG | + | chr3_3:85197950-85197969 | Msa0480020:CDS | 35.0% | |
| GGAAGGCCATTTGAAAATAT+TGG | + | chr3_3:85197998-85198017 | Msa0480020:CDS | 35.0% | |
| AGGCCATTTGAAAATATTGG+AGG | + | chr3_3:85198001-85198020 | Msa0480020:CDS | 35.0% | |
| ! | GGACCTCCAATATTTTCAAA+TGG | - | chr3_3:85198007-85198026 | None:intergenic | 35.0% |
| ATATTGGAGGTCCTTATCAA+TGG | + | chr3_3:85198014-85198033 | Msa0480020:CDS | 35.0% | |
| TTTACTTGAAGCAAGCTATG+TGG | + | chr3_3:85198067-85198086 | Msa0480020:CDS | 35.0% | |
| TTACTTGAAGCAAGCTATGT+GGG | + | chr3_3:85198068-85198087 | Msa0480020:CDS | 35.0% | |
| GACATGTCAGACACTAAATA+TGG | + | chr3_3:85198298-85198317 | Msa0480020:intron | 35.0% | |
| TGATAGAACCAATAGGAGTT+GGG | - | chr3_3:85198524-85198543 | None:intergenic | 35.0% | |
| ATGATAGAACCAATAGGAGT+TGG | - | chr3_3:85198525-85198544 | None:intergenic | 35.0% | |
| TGGATGTTAATGCAATGGAT+AGG | + | chr3_3:85198839-85198858 | Msa0480020:CDS | 35.0% | |
| TCAACATTAGCGTGAAGAAA+TGG | - | chr3_3:85198886-85198905 | None:intergenic | 35.0% | |
| GAAACTTGACAGGCTAATAT+TGG | - | chr3_3:85199452-85199471 | None:intergenic | 35.0% | |
| ACACAATGTAGAAACTTGAC+AGG | - | chr3_3:85199462-85199481 | None:intergenic | 35.0% | |
| TGGTGTAAGACTAGATATCA+AGG | + | chr3_3:85199551-85199570 | Msa0480020:CDS | 35.0% | |
| !! | GTAGAGTATTTTGAATCCAC+TGG | + | chr3_3:85199669-85199688 | Msa0480020:CDS | 35.0% |
| TCACCTAATAGTTTCCACAT+TGG | + | chr3_3:85199723-85199742 | Msa0480020:CDS | 35.0% | |
| CTTCCAATGTGGAAACTATT+AGG | - | chr3_3:85199729-85199748 | None:intergenic | 35.0% | |
| TTGGATCATGCAACATTCTT+CGG | + | chr3_3:85199886-85199905 | Msa0480020:CDS | 35.0% | |
| TTGGACTCACAAACAAAGTT+TGG | + | chr3_3:85199933-85199952 | Msa0480020:CDS | 35.0% | |
| ! | ACAAACAAAGTTTGGTGACA+CGG | + | chr3_3:85199941-85199960 | Msa0480020:CDS | 35.0% |
| !! | CTACGAGTTTTAGTATCATC+AGG | + | chr3_3:85200002-85200021 | Msa0480020:CDS | 35.0% |
| !! | CAGTAGCAAGTTTTAATCAG+TGG | + | chr3_3:85200069-85200088 | Msa0480020:CDS | 35.0% |
| CTAGATGAACAAAACGCAAA+TGG | + | chr3_3:85200245-85200264 | Msa0480020:CDS | 35.0% | |
| CTCATAGACTTGAACCAAAA+TGG | + | chr3_3:85200386-85200405 | Msa0480020:CDS | 35.0% | |
| !! | GAAGGGTATTATGATGTGAA+TGG | + | chr3_3:85200554-85200573 | Msa0480020:CDS | 35.0% |
| !!! | GTGAATGGTTTTGATGGAAA+TGG | + | chr3_3:85200569-85200588 | Msa0480020:CDS | 35.0% |
| TTAGCAGCAAGAGAAAGTAA+TGG | + | chr3_3:85200608-85200627 | Msa0480020:CDS | 35.0% | |
| TTCCATCGAAATCTTTCACT+TGG | - | chr3_3:85200929-85200948 | None:intergenic | 35.0% | |
| CAACATCAAACTTCTTCCTA+CGG | - | chr3_3:85200952-85200971 | None:intergenic | 35.0% | |
| !! | TGCATTTTGTTTGTGAAGGT+GGG | + | chr3_3:85201017-85201036 | Msa0480020:CDS | 35.0% |
| !! | GTAACAAGAGAAGCCATTTT+TGG | + | chr3_3:85201079-85201098 | Msa0480020:CDS | 35.0% |
| !! | TTTGGTTCTAGAGCTAATAC+TGG | + | chr3_3:85201097-85201116 | Msa0480020:CDS | 35.0% |
| ATGTTTAGCGAATCCATTGG+TGG | + | chr3_3:85196694-85196713 | Msa0480020:CDS | 40.0% | |
| ! | AAGCACGATCTCCATTGTTT+TGG | - | chr3_3:85196753-85196772 | None:intergenic | 40.0% |
| ATAAGGCAGAACATTCGGAA+CGG | - | chr3_3:85196898-85196917 | None:intergenic | 40.0% | |
| CAGATAAACTGCAGCTTAGT+AGG | + | chr3_3:85197077-85197096 | Msa0480020:intron | 40.0% | |
| ATGATTGCATTTGTCGTGTC+CGG | + | chr3_3:85197131-85197150 | Msa0480020:intron | 40.0% | |
| ATGAGTTTCATGCACAGAGA+TGG | - | chr3_3:85197186-85197205 | None:intergenic | 40.0% | |
| CATGTATGGAACTATGTCAG+GGG | + | chr3_3:85197531-85197550 | Msa0480020:intron | 40.0% | |
| GTAAATGTGAGATTGTTCCG+GGG | + | chr3_3:85197951-85197970 | Msa0480020:CDS | 40.0% | |
| GATGAGTACATCAACAACCT+CGG | - | chr3_3:85198189-85198208 | None:intergenic | 40.0% | |
| GGTTGTTGATGTACTCATCA+AGG | + | chr3_3:85198190-85198209 | Msa0480020:CDS | 40.0% | |
| !!! | CTAGTGTATGTCCGCTTTTT+TGG | + | chr3_3:85198230-85198249 | Msa0480020:intron | 40.0% |
| GACGTGTCAGACACTAAATA+TGG | + | chr3_3:85198375-85198394 | Msa0480020:intron | 40.0% | |
| CTTTGAACTTTGACTGACAG+AGG | - | chr3_3:85198404-85198423 | None:intergenic | 40.0% | |
| GACGTGTCAGACACTAAATA+TGG | + | chr3_3:85198375-85198394 | Msa0480020:intron | 40.0% | |
| AGAGACTAGACTTTGAACCT+TGG | - | chr3_3:85198492-85198511 | None:intergenic | 40.0% | |
| ! | ACGTAGGGGTTACCAAATTT+TGG | - | chr3_3:85198683-85198702 | None:intergenic | 40.0% |
| TGGAGTGGATGTTAATGCAA+TGG | + | chr3_3:85198834-85198853 | Msa0480020:CDS | 40.0% | |
| ! | CAATGCATTATTTGCTGCTG+TGG | + | chr3_3:85198909-85198928 | Msa0480020:CDS | 40.0% |
| TGTAGTTAGACTACTGTTGC+AGG | + | chr3_3:85198948-85198967 | Msa0480020:CDS | 40.0% | |
| TGGGCATGTCATTATCATCA+TGG | + | chr3_3:85199104-85199123 | Msa0480020:intron | 40.0% | |
| TGGTGTGTGGATAATTTGGT+TGG | + | chr3_3:85199268-85199287 | Msa0480020:intron | 40.0% | |
| TGTGTGGATAATTTGGTTGG+TGG | + | chr3_3:85199271-85199290 | Msa0480020:intron | 40.0% | |
| GTTTCATAGTCTGTCGATCA+GGG | - | chr3_3:85199297-85199316 | None:intergenic | 40.0% | |
| TCTGATTTCTGCAATCAGGT+TGG | + | chr3_3:85199531-85199550 | Msa0480020:intron | 40.0% | |
| TCAAGGTCAAATTAGGAGCT+TGG | + | chr3_3:85199568-85199587 | Msa0480020:CDS | 40.0% | |
| TCAAATTAGGAGCTTGGTCT+TGG | + | chr3_3:85199574-85199593 | Msa0480020:CDS | 40.0% | |
| ! | CAAATTAGGAGCTTGGTCTT+GGG | + | chr3_3:85199575-85199594 | Msa0480020:CDS | 40.0% |
| ACAGGAGAAGAATTTCGTGT+AGG | + | chr3_3:85199606-85199625 | Msa0480020:CDS | 40.0% | |
| GAAGAATTTCGTGTAGGTGT+TGG | + | chr3_3:85199612-85199631 | Msa0480020:CDS | 40.0% | |
| CATGTTGAGTATAGTACCAG+TGG | - | chr3_3:85199688-85199707 | None:intergenic | 40.0% | |
| TGTGGAAACTATTAGGTGAC+AGG | - | chr3_3:85199722-85199741 | None:intergenic | 40.0% | |
| ! | CATTGTTACACATGATGGTG+TGG | - | chr3_3:85199764-85199783 | None:intergenic | 40.0% |
| CATGTGAATAGGGTGTACAT+TGG | - | chr3_3:85199856-85199875 | None:intergenic | 40.0% | |
| CAATGTACACCCTATTCACA+TGG | + | chr3_3:85199854-85199873 | Msa0480020:CDS | 40.0% | |
| !! | CGGCATTGATGATTTGTACA+AGG | + | chr3_3:85199961-85199980 | Msa0480020:CDS | 40.0% |
| TTGGGGATAGTAAATTCGTC+CGG | + | chr3_3:85200032-85200051 | Msa0480020:CDS | 40.0% | |
| ! | TTCAAGGTACTTCTTCATGC+TGG | + | chr3_3:85200314-85200333 | Msa0480020:CDS | 40.0% |
| TCTCTTGCTGCTAACATCAA+TGG | - | chr3_3:85200602-85200621 | None:intergenic | 40.0% | |
| ACAAAGGAAATGATGCAGAG+CGG | + | chr3_3:85200723-85200742 | Msa0480020:CDS | 40.0% | |
| GCTAGAATAGTAGTGTTGTG+TGG | + | chr3_3:85200764-85200783 | Msa0480020:CDS | 40.0% | |
| GTCGCCACATAAGAAACAAT+TGG | + | chr3_3:85200823-85200842 | Msa0480020:CDS | 40.0% | |
| ! | TGCTGCTGGAATTTTACGTT+GGG | + | chr3_3:85200856-85200875 | Msa0480020:CDS | 40.0% |
| ! | TGTTGTTTGTAAAGAGGCTG+AGG | + | chr3_3:85200898-85200917 | Msa0480020:CDS | 40.0% |
| GACCAAGTGAAAGATTTCGA+TGG | + | chr3_3:85200924-85200943 | Msa0480020:CDS | 40.0% | |
| AAAGATTTCGATGGAACCGT+AGG | + | chr3_3:85200933-85200952 | Msa0480020:CDS | 40.0% | |
| !! | GAGGTGCATTTTGTTTGTGA+AGG | + | chr3_3:85201013-85201032 | Msa0480020:CDS | 40.0% |
| !! | GTGCATTTTGTTTGTGAAGG+TGG | + | chr3_3:85201016-85201035 | Msa0480020:CDS | 40.0% |
| !! | GCATTTTGTTTGTGAAGGTG+GGG | + | chr3_3:85201018-85201037 | Msa0480020:CDS | 40.0% |
| GGTTGAAATGGCTGAGTTAT+GGG | + | chr3_3:85201039-85201058 | Msa0480020:CDS | 40.0% | |
| TGTTTCCTTAGCCCTGTACT+AGG | - | chr3_3:85196590-85196609 | None:intergenic | 45.0% | |
| ! | TGAGGTCACTGCTCTGTTTT+TGG | + | chr3_3:85196823-85196842 | Msa0480020:CDS | 45.0% |
| !!! | CTGTTTTTGGCTGCACATTC+TGG | + | chr3_3:85196836-85196855 | Msa0480020:CDS | 45.0% |
| GACTCTAATTCGTAAGCTGC+TGG | + | chr3_3:85196865-85196884 | Msa0480020:CDS | 45.0% | |
| TAGCTTAGACGTCCAGATTG+TGG | + | chr3_3:85197489-85197508 | Msa0480020:intron | 45.0% | |
| AGCTTAGACGTCCAGATTGT+GGG | + | chr3_3:85197490-85197509 | Msa0480020:intron | 45.0% | |
| ATCCAACCAAACCCACAATC+TGG | - | chr3_3:85197504-85197523 | None:intergenic | 45.0% | |
| TTGGAGGTCCTTATCAATGG+TGG | + | chr3_3:85198017-85198036 | Msa0480020:CDS | 45.0% | |
| TGGAGGTCCTTATCAATGGT+GGG | + | chr3_3:85198018-85198037 | Msa0480020:CDS | 45.0% | |
| CATGTATTGCAACACGAGGA+CGG | - | chr3_3:85198136-85198155 | None:intergenic | 45.0% | |
| TCTGCAACAAGCAGAGACAA+GGG | - | chr3_3:85198159-85198178 | None:intergenic | 45.0% | |
| ! | ATGGATAGCTCTATCAGCCA+AGG | + | chr3_3:85198472-85198491 | Msa0480020:intron | 45.0% |
| TCACTAGACCCAACTCCTAT+TGG | + | chr3_3:85198513-85198532 | Msa0480020:intron | 45.0% | |
| ! | TCTTGGGTTTGTTTGCAGCA+TGG | + | chr3_3:85198814-85198833 | Msa0480020:intron | 45.0% |
| AGTTAGACTACTGTTGCAGG+TGG | + | chr3_3:85198951-85198970 | Msa0480020:intron | 45.0% | |
| GTTAGACTACTGTTGCAGGT+GGG | + | chr3_3:85198952-85198971 | Msa0480020:intron | 45.0% | |
| TTAGACTACTGTTGCAGGTG+GGG | + | chr3_3:85198953-85198972 | Msa0480020:intron | 45.0% | |
| CTCTTAGACCCAACACTGTT+CGG | + | chr3_3:85199243-85199262 | Msa0480020:intron | 45.0% | |
| !! | GGCTTGGTGTGTGGATAATT+TGG | + | chr3_3:85199264-85199283 | Msa0480020:intron | 45.0% |
| GGTTTCATAGTCTGTCGATC+AGG | - | chr3_3:85199298-85199317 | None:intergenic | 45.0% | |
| ! | TGGTCTTGGGAAACAGATAC+AGG | + | chr3_3:85199588-85199607 | Msa0480020:CDS | 45.0% |
| ! | CTGAGCCTTATCCAATCACA+TGG | + | chr3_3:85199640-85199659 | Msa0480020:CDS | 45.0% |
| GCACACCATGTGATTGGATA+AGG | - | chr3_3:85199648-85199667 | None:intergenic | 45.0% | |
| TCTACAGCACACCATGTGAT+TGG | - | chr3_3:85199654-85199673 | None:intergenic | 45.0% | |
| GCAAGAGAGTTCTTCCAATG+TGG | - | chr3_3:85199740-85199759 | None:intergenic | 45.0% | |
| AGTATCATCAGGAGCTGACT+TGG | + | chr3_3:85200013-85200032 | Msa0480020:CDS | 45.0% | |
| ! | GTATCATCAGGAGCTGACTT+GGG | + | chr3_3:85200014-85200033 | Msa0480020:CDS | 45.0% |
| !! | TATCATCAGGAGCTGACTTG+GGG | + | chr3_3:85200015-85200034 | Msa0480020:CDS | 45.0% |
| TACTGAAGTTGCGCAATGAC+CGG | - | chr3_3:85200054-85200073 | None:intergenic | 45.0% | |
| TGTCTCCATAACAAGCTGCT+CGG | - | chr3_3:85200508-85200527 | None:intergenic | 45.0% | |
| CAAAGGAAATGATGCAGAGC+GGG | + | chr3_3:85200724-85200743 | Msa0480020:CDS | 45.0% | |
| !! | TTGGTAATGATTGGTGCTGC+TGG | + | chr3_3:85200842-85200861 | Msa0480020:CDS | 45.0% |
| !! | GTGCTGCTGGAATTTTACGT+TGG | + | chr3_3:85200855-85200874 | Msa0480020:CDS | 45.0% |
| ! | GCTGCTGGAATTTTACGTTG+GGG | + | chr3_3:85200857-85200876 | Msa0480020:CDS | 45.0% |
| ! | CTGCTGGAATTTTACGTTGG+GGG | + | chr3_3:85200858-85200877 | Msa0480020:CDS | 45.0% |
| GTTTGTAAAGAGGCTGAGGT+AGG | + | chr3_3:85200902-85200921 | Msa0480020:CDS | 45.0% | |
| TTGTGAAGGTGGGGTTGAAA+TGG | + | chr3_3:85201027-85201046 | Msa0480020:CDS | 45.0% | |
| GGGTTGAAATGGCTGAGTTA+TGG | + | chr3_3:85201038-85201057 | Msa0480020:CDS | 45.0% | |
| ATGGCTGAGTTATGGGTAAG+AGG | + | chr3_3:85201046-85201065 | Msa0480020:CDS | 45.0% | |
| TGGCTGAGTTATGGGTAAGA+GGG | + | chr3_3:85201047-85201066 | Msa0480020:CDS | 45.0% | |
| ! | CGTTGGTGAGTCCTAGTACA+GGG | + | chr3_3:85196576-85196595 | Msa0480020:CDS | 50.0% |
| TGAGTCCTAGTACAGGGCTA+AGG | + | chr3_3:85196582-85196601 | Msa0480020:CDS | 50.0% | |
| CTTGTTGATGCAGCTCATCG+CGG | + | chr3_3:85196650-85196669 | Msa0480020:CDS | 50.0% | |
| ATGCACACTCAGACACACAC+CGG | - | chr3_3:85197153-85197172 | None:intergenic | 50.0% | |
| AGACGTCCAGATTGTGGGTT+TGG | + | chr3_3:85197495-85197514 | Msa0480020:intron | 50.0% | |
| ! | GTCCAGATTGTGGGTTTGGT+TGG | + | chr3_3:85197499-85197518 | Msa0480020:intron | 50.0% |
| ATGCTACAACAGCAGCAGTG+AGG | + | chr3_3:85197976-85197995 | Msa0480020:CDS | 50.0% | |
| TGCTACAACAGCAGCAGTGA+GGG | + | chr3_3:85197977-85197996 | Msa0480020:CDS | 50.0% | |
| GGAGGTCCTTATCAATGGTG+GGG | + | chr3_3:85198019-85198038 | Msa0480020:CDS | 50.0% | |
| AACACGAGGACGGATCATGT+TGG | - | chr3_3:85198126-85198145 | None:intergenic | 50.0% | |
| AGGGCATGTATTGCAACACG+AGG | - | chr3_3:85198140-85198159 | None:intergenic | 50.0% | |
| CTCTGCAACAAGCAGAGACA+AGG | - | chr3_3:85198160-85198179 | None:intergenic | 50.0% | |
| ! | CTTGTCTCTGCTTGTTGCAG+AGG | + | chr3_3:85198158-85198177 | Msa0480020:CDS | 50.0% |
| TTGTTGCAGAGGATTCACCG+AGG | + | chr3_3:85198169-85198188 | Msa0480020:CDS | 50.0% | |
| ! | GGTTTGTTTGCAGCATGGAG+TGG | + | chr3_3:85198819-85198838 | Msa0480020:intron | 50.0% |
| ! | TATTTGCTGCTGTGGTCAGC+AGG | + | chr3_3:85198917-85198936 | Msa0480020:CDS | 50.0% |
| ! | CGAACAGTGTTGGGTCTAAG+AGG | - | chr3_3:85199245-85199264 | None:intergenic | 50.0% |
| ACACCAAGCCGAACAGTGTT+GGG | - | chr3_3:85199254-85199273 | None:intergenic | 50.0% | |
| CACTCGAGCGAATGACATAG+AGG | + | chr3_3:85200187-85200206 | Msa0480020:CDS | 50.0% | |
| GGGTAACGTGGAAGCTTTCA+AGG | + | chr3_3:85200298-85200317 | Msa0480020:CDS | 50.0% | |
| ! | TAACAAGCTGCTCGGTGAAG+AGG | - | chr3_3:85200500-85200519 | None:intergenic | 50.0% |
| !! | CTTCACCGAGCAGCTTGTTA+TGG | + | chr3_3:85200500-85200519 | Msa0480020:CDS | 50.0% |
| ! | GCGTTGGTGAGTCCTAGTAC+AGG | + | chr3_3:85196575-85196594 | Msa0480020:CDS | 55.0% |
| CTGCTGTTGTAGCATAGCCC+CGG | - | chr3_3:85197971-85197990 | None:intergenic | 55.0% | |
| ACAACAGCAGCAGTGAGGGA+AGG | + | chr3_3:85197981-85198000 | Msa0480020:CDS | 55.0% | |
| GTCGCAACTTGCATGCGAAG+AGG | + | chr3_3:85198043-85198062 | Msa0480020:CDS | 55.0% | |
| AGACCCAACACTGTTCGGCT+TGG | + | chr3_3:85199248-85199267 | Msa0480020:intron | 55.0% | |
| CACACCAAGCCGAACAGTGT+TGG | - | chr3_3:85199255-85199274 | None:intergenic | 55.0% | |
| !! | ACACTGTTCGGCTTGGTGTG+TGG | + | chr3_3:85199255-85199274 | Msa0480020:intron | 55.0% |
| GTCGCGCAGCCATGTGAATA+GGG | - | chr3_3:85199866-85199885 | None:intergenic | 55.0% | |
| AGTCGCGCAGCCATGTGAAT+AGG | - | chr3_3:85199867-85199886 | None:intergenic | 55.0% | |
| ATTCACATGGCTGCGCGACT+TGG | + | chr3_3:85199867-85199886 | Msa0480020:CDS | 55.0% | |
| TGTCATGATAGCTGCCGCAG+AGG | + | chr3_3:85200277-85200296 | Msa0480020:CDS | 55.0% | |
| GTCATGATAGCTGCCGCAGA+GGG | + | chr3_3:85200278-85200297 | Msa0480020:CDS | 55.0% | |
| AGCTTCCACGTTACCCTCTG+CGG | - | chr3_3:85200294-85200313 | None:intergenic | 55.0% | |
| TCGGTGAAGAGGATTCCCCT+CGG | - | chr3_3:85200489-85200508 | None:intergenic | 55.0% | |
| GCGACGCCCCACCATTGATA+AGG | - | chr3_3:85198028-85198047 | None:intergenic | 60.0% | |
| AGCTGCCGCAGAGGGTAACG+TGG | + | chr3_3:85200286-85200305 | Msa0480020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85196572 | 85201123 | 85196572 | ID=Msa0480020;Name=Msa0480020 |
| chr3_3 | mRNA | 85196572 | 85201123 | 85196572 | ID=Msa0480020-mRNA-1;Parent=Msa0480020;Name=Msa0480020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|767 |
| chr3_3 | exon | 85196572 | 85196886 | 85196572 | ID=Msa0480020-mRNA-1:exon:24376;Parent=Msa0480020-mRNA-1 |
| chr3_3 | exon | 85197936 | 85198211 | 85197936 | ID=Msa0480020-mRNA-1:exon:24377;Parent=Msa0480020-mRNA-1 |
| chr3_3 | exon | 85198832 | 85198969 | 85198832 | ID=Msa0480020-mRNA-1:exon:24378;Parent=Msa0480020-mRNA-1 |
| chr3_3 | exon | 85199549 | 85201123 | 85199549 | ID=Msa0480020-mRNA-1:exon:24379;Parent=Msa0480020-mRNA-1 |
| chr3_3 | CDS | 85196572 | 85196886 | 85196572 | ID=Msa0480020-mRNA-1:cds;Parent=Msa0480020-mRNA-1 |
| chr3_3 | CDS | 85197936 | 85198211 | 85197936 | ID=Msa0480020-mRNA-1:cds;Parent=Msa0480020-mRNA-1 |
| chr3_3 | CDS | 85198832 | 85198969 | 85198832 | ID=Msa0480020-mRNA-1:cds;Parent=Msa0480020-mRNA-1 |
| chr3_3 | CDS | 85199549 | 85201123 | 85199549 | ID=Msa0480020-mRNA-1:cds;Parent=Msa0480020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
