Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514400 | XP_003601810.1 | 97.706 | 654 | 15 | 0 | 1 | 654 | 2 | 655 | 0.0 | 1308 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514400 | sp|O70511|ANK3_RAT | 24.407 | 590 | 351 | 17 | 85 | 632 | 276 | 812 | 7.97e-27 | 120 |
| Msa0514400 | sp|O70511|ANK3_RAT | 23.796 | 706 | 432 | 22 | 30 | 651 | 48 | 731 | 1.37e-22 | 107 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514400 | G7JC18 | 97.706 | 654 | 15 | 0 | 1 | 654 | 2 | 655 | 0.0 | 1308 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373430 | Msa0514400 | 0.929680 | 4.907670e-93 | -8.615850e-47 |
| Msa0421990 | Msa0514400 | 0.917478 | 5.057337e-86 | -8.615850e-47 |
| Msa0480020 | Msa0514400 | 0.925611 | 1.451949e-90 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514400 | MtrunA17_Chr3g0122751 | 97.706 | 654 | 15 | 0 | 1 | 654 | 2 | 655 | 0.0 | 1308 |
| Msa0514400 | MtrunA17_Chr7g0226271 | 57.764 | 644 | 262 | 6 | 12 | 654 | 7 | 641 | 0.0 | 715 |
| Msa0514400 | MtrunA17_Chr6g0461061 | 23.510 | 302 | 184 | 9 | 281 | 549 | 167 | 454 | 3.28e-12 | 69.3 |
| Msa0514400 | MtrunA17_Chr5g0418551 | 33.562 | 146 | 88 | 4 | 483 | 628 | 90 | 226 | 4.87e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0514400 | AT5G14230.1 | 53.106 | 644 | 290 | 6 | 12 | 655 | 7 | 638 | 0.0 | 671 |
| Msa0514400 | AT5G14230.2 | 51.738 | 489 | 224 | 6 | 166 | 654 | 1 | 477 | 2.50e-164 | 484 |
Find 114 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGAATATGCCCTTAAAA+AGG | 0.174977 | 3_4:+65085497 | Msa0514400:CDS |
| ATTCTTCGGTGTTTGATTAA+TGG | 0.185908 | 3_4:+65084958 | Msa0514400:CDS |
| CTTCCAATGTGGAAACTATT+AGG | 0.253098 | 3_4:-65084784 | None:intergenic |
| GGAAGGCCATTTGAAAATAT+TGG | 0.260482 | 3_4:+65083056 | Msa0514400:CDS |
| CTAGATATCAAGGTCAAATT+AGG | 0.280904 | 3_4:+65084619 | Msa0514400:CDS |
| GAACCAAAATGGTGAAAATA+AGG | 0.285531 | 3_4:+65085455 | Msa0514400:CDS |
| AGTTTATCAGAAAGCAATTC+TGG | 0.286349 | 3_4:+65085155 | Msa0514400:CDS |
| AAGCACGATCTCCATTGTTT+TGG | 0.289357 | 3_4:-65081809 | None:intergenic |
| CTCATAGACTTGAACCAAAA+TGG | 0.291322 | 3_4:+65085444 | Msa0514400:CDS |
| CTTCACCGAGCAGCTTGTTA+TGG | 0.321590 | 3_4:+65085558 | Msa0514400:CDS |
| TTGGTGGATGTTAACTTCAT+TGG | 0.328128 | 3_4:+65081769 | Msa0514400:CDS |
| TCAAATTAGGAGCTTGGTCT+TGG | 0.331293 | 3_4:+65084632 | Msa0514400:CDS |
| TTGGACTCACAAACAAAGTT+TGG | 0.355546 | 3_4:+65084991 | Msa0514400:CDS |
| GTTCATCTAGATTTATATTC+CGG | 0.369226 | 3_4:-65085290 | None:intergenic |
| TGTAAATGTGAGATTGTTCC+GGG | 0.373790 | 3_4:+65083008 | Msa0514400:CDS |
| ATCTCTGTTTCGTAGTCAAT+TGG | 0.376161 | 3_4:-65081676 | None:intergenic |
| ATGTAAATGTGAGATTGTTC+CGG | 0.388075 | 3_4:+65083007 | Msa0514400:CDS |
| AGTCGCGCAGCCATGTGAAT+AGG | 0.389655 | 3_4:-65084922 | None:intergenic |
| TTGGATCATGCAACATTCTT+CGG | 0.392048 | 3_4:+65084944 | Msa0514400:CDS |
| TGTAGTTAGACTACTGTTGC+AGG | 0.401334 | 3_4:+65084006 | Msa0514400:CDS |
| ATTCACATGGCTGCGCGACT+TGG | 0.408350 | 3_4:+65084925 | Msa0514400:CDS |
| TGTTTCCTTAGCCCTGTACT+AGG | 0.421197 | 3_4:-65081646 | None:intergenic |
| GTCGCGCAGCCATGTGAATA+GGG | 0.441194 | 3_4:-65084921 | None:intergenic |
| TTCAAGGTACTTCTTCATGC+TGG | 0.441197 | 3_4:+65085372 | Msa0514400:CDS |
| TATTTGCTGCTGTGGTCAGC+AGG | 0.443955 | 3_4:+65083975 | Msa0514400:CDS |
| CTTGTCTCTGCTTGTTGCAG+AGG | 0.445183 | 3_4:+65083216 | Msa0514400:CDS |
| CTAGATGAACAAAACGCAAA+TGG | 0.451756 | 3_4:+65085303 | Msa0514400:CDS |
| TCAACATTAGCGTGAAGAAA+TGG | 0.452245 | 3_4:-65083941 | None:intergenic |
| GGGTAACGTGGAAGCTTTCA+AGG | 0.453069 | 3_4:+65085356 | Msa0514400:CDS |
| TCTACAGCACACCATGTGAT+TGG | 0.456993 | 3_4:-65084709 | None:intergenic |
| ATTCTGGATATAATTAGATC+TGG | 0.458790 | 3_4:+65085171 | Msa0514400:CDS |
| TCTCTTGCTGCTAACATCAA+TGG | 0.465497 | 3_4:-65085657 | None:intergenic |
| GAAGGGTATTATGATGTGAA+TGG | 0.467144 | 3_4:+65085612 | Msa0514400:CDS |
| CAAATTAGGAGCTTGGTCTT+GGG | 0.472134 | 3_4:+65084633 | Msa0514400:CDS |
| AGTATCATCAGGAGCTGACT+TGG | 0.473154 | 3_4:+65085071 | Msa0514400:CDS |
| GATTAATGGTAAGTGTAACT+TGG | 0.488282 | 3_4:+65084972 | Msa0514400:CDS |
| GAAGAATTTCGTGTAGGTGT+TGG | 0.491534 | 3_4:+65084670 | Msa0514400:CDS |
| GTATCATCAGGAGCTGACTT+GGG | 0.496179 | 3_4:+65085072 | Msa0514400:CDS |
| CGGCATTGATGATTTGTACA+AGG | 0.498203 | 3_4:+65085019 | Msa0514400:CDS |
| TCTTTCATTGTTACACATGA+TGG | 0.498969 | 3_4:-65084824 | None:intergenic |
| TTTAAGTAATGGTGTGGATA+CGG | 0.499496 | 3_4:+65084861 | Msa0514400:CDS |
| GCACACCATGTGATTGGATA+AGG | 0.500807 | 3_4:-65084703 | None:intergenic |
| TACTGAAGTTGCGCAATGAC+CGG | 0.504102 | 3_4:-65085109 | None:intergenic |
| TCAAGGTCAAATTAGGAGCT+TGG | 0.504271 | 3_4:+65084626 | Msa0514400:CDS |
| CAATGCATTATTTGCTGCTG+TGG | 0.507461 | 3_4:+65083967 | Msa0514400:CDS |
| GCGACGCCCCACCATTGATA+AGG | 0.507974 | 3_4:-65083083 | None:intergenic |
| GTATGAAGAGTTTAAAATTG+AGG | 0.511045 | 3_4:+65081864 | Msa0514400:CDS |
| CAAAGGAAATGATGCAGAGC+GGG | 0.513044 | 3_4:+65085782 | Msa0514400:CDS |
| TGGATTCGCTAAACATTCAA+TGG | 0.514214 | 3_4:-65081746 | None:intergenic |
| GATATAATTAGATCTGGAAA+AGG | 0.519776 | 3_4:+65085177 | Msa0514400:CDS |
| GACTCTAATACGTAAGCTGC+TGG | 0.526286 | 3_4:+65081924 | Msa0514400:CDS |
| TGTGGAAACTATTAGGTGAC+AGG | 0.527496 | 3_4:-65084777 | None:intergenic |
| CTCTGCAACAAGCAGAGACA+AGG | 0.528740 | 3_4:-65083215 | None:intergenic |
| TGGTCTTGGGAAACAGATAC+AGG | 0.531451 | 3_4:+65084646 | Msa0514400:CDS |
| GCGTTGGTGAGTCCTAGTAC+AGG | 0.537434 | 3_4:+65081634 | Msa0514400:CDS |
| TGCTACAACAGCAGCAGTGA+GGG | 0.545172 | 3_4:+65083035 | Msa0514400:CDS |
| TTACTTGAAGCAAGCTATGT+GGG | 0.546833 | 3_4:+65083126 | Msa0514400:CDS |
| TGGAGGTCCTTATCAATGGT+GGG | 0.547063 | 3_4:+65083076 | Msa0514400:CDS |
| TGGTGTAAGACTAGATATCA+AGG | 0.554150 | 3_4:+65084609 | Msa0514400:CDS |
| TAACAAGCTGCTCGGTGAAG+AGG | 0.560472 | 3_4:-65085555 | None:intergenic |
| GGTTGTTGATGTACTCATCA+AGG | 0.562299 | 3_4:+65083248 | Msa0514400:CDS |
| AATATTAGTACTTTAACCGA+GGG | 0.563629 | 3_4:+65085528 | Msa0514400:CDS |
| GGTTTGTTTGCAGCATGGAG+TGG | 0.566933 | 3_4:+65083877 | Msa0514400:intron |
| TTGGAGGTCCTTATCAATGG+TGG | 0.567906 | 3_4:+65083075 | Msa0514400:CDS |
| CATTGTTACACATGATGGTG+TGG | 0.569124 | 3_4:-65084819 | None:intergenic |
| ATATTGGAGGTCCTTATCAA+TGG | 0.569895 | 3_4:+65083072 | Msa0514400:CDS |
| TTTACTTGAAGCAAGCTATG+TGG | 0.573064 | 3_4:+65083125 | Msa0514400:CDS |
| GTCATGATAGCTGCCGCAGA+GGG | 0.576593 | 3_4:+65085336 | Msa0514400:CDS |
| TTGGGGATAGTAAATTCGTC+CGG | 0.577097 | 3_4:+65085090 | Msa0514400:CDS |
| GAATATTAGTACTTTAACCG+AGG | 0.578648 | 3_4:+65085527 | Msa0514400:CDS |
| AGGCCATTTGAAAATATTGG+AGG | 0.582676 | 3_4:+65083059 | Msa0514400:CDS |
| AGCTGCCGCAGAGGGTAACG+TGG | 0.588395 | 3_4:+65085344 | Msa0514400:CDS |
| CAATGTACACCCTATTCACA+TGG | 0.589994 | 3_4:+65084912 | Msa0514400:CDS |
| TACACTGAATTTACTCGATG+AGG | 0.593045 | 3_4:-65081844 | None:intergenic |
| CACTCGAGCGAATGACATAG+AGG | 0.598935 | 3_4:+65085245 | Msa0514400:CDS |
| CTGCTGTTGTAGCATAGCCC+CGG | 0.599857 | 3_4:-65083026 | None:intergenic |
| TTAGCAGCAAGAGAAAGTAA+TGG | 0.601878 | 3_4:+65085666 | Msa0514400:CDS |
| GGAGGTCCTTATCAATGGTG+GGG | 0.602282 | 3_4:+65083077 | Msa0514400:CDS |
| TGGATGTTAATGCAATGGAT+AGG | 0.603440 | 3_4:+65083897 | Msa0514400:CDS |
| ATGTTTAGCGAATCCATTGG+TGG | 0.603618 | 3_4:+65081753 | Msa0514400:CDS |
| CATGTTGAGTATAGTACCAG+TGG | 0.606160 | 3_4:-65084743 | None:intergenic |
| CTTGCTAGAGAAAATAACAA+AGG | 0.606392 | 3_4:+65085765 | Msa0514400:CDS |
| GATGTTGAAGTCCAAAACAA+TGG | 0.608066 | 3_4:+65081798 | Msa0514400:CDS |
| TGAGTCCTAGTACAGGGCTA+AGG | 0.609927 | 3_4:+65081641 | Msa0514400:CDS |
| TGAATGTTTAGCGAATCCAT+TGG | 0.610245 | 3_4:+65081750 | Msa0514400:CDS |
| TCACCTAATAGTTTCCACAT+TGG | 0.614105 | 3_4:+65084781 | Msa0514400:CDS |
| TATCATCAGGAGCTGACTTG+GGG | 0.619391 | 3_4:+65085073 | Msa0514400:CDS |
| TGGAGTGGATGTTAATGCAA+TGG | 0.627216 | 3_4:+65083892 | Msa0514400:CDS |
| CATGTATTGCAACACGAGGA+CGG | 0.631502 | 3_4:-65083191 | None:intergenic |
| ACAAACAAAGTTTGGTGACA+CGG | 0.631687 | 3_4:+65084999 | Msa0514400:CDS |
| ATGAAGTTAACATCCACCAA+TGG | 0.633936 | 3_4:-65081766 | None:intergenic |
| CATGTGAATAGGGTGTACAT+TGG | 0.634202 | 3_4:-65084911 | None:intergenic |
| ACAACAGCAGCAGTGAGGGA+AGG | 0.634576 | 3_4:+65083039 | Msa0514400:CDS |
| GTCGCAACTTGCATGCGAAG+AGG | 0.636970 | 3_4:+65083101 | Msa0514400:CDS |
| TGTCATGATAGCTGCCGCAG+AGG | 0.638941 | 3_4:+65085335 | Msa0514400:CDS |
| CTGAGCCTTATCCAATCACA+TGG | 0.641426 | 3_4:+65084698 | Msa0514400:CDS |
| CGTTGGTGAGTCCTAGTACA+GGG | 0.644162 | 3_4:+65081635 | Msa0514400:CDS |
| TGTCTCCATAACAAGCTGCT+CGG | 0.646022 | 3_4:-65085563 | None:intergenic |
| ACAAAGGAAATGATGCAGAG+CGG | 0.647414 | 3_4:+65085781 | Msa0514400:CDS |
| AACACGAGGACGGATCATGT+TGG | 0.649295 | 3_4:-65083181 | None:intergenic |
| ACAGGAGAAGAATTTCGTGT+AGG | 0.653770 | 3_4:+65084664 | Msa0514400:CDS |
| GCAAGAGAGTTCTTCCAATG+TGG | 0.656913 | 3_4:-65084795 | None:intergenic |
| TCTGCAACAAGCAGAGACAA+GGG | 0.657171 | 3_4:-65083214 | None:intergenic |
| AGCTTCCACGTTACCCTCTG+CGG | 0.660367 | 3_4:-65085349 | None:intergenic |
| GGATGTTAACTTCATTGGAA+CGG | 0.666070 | 3_4:+65081774 | Msa0514400:CDS |
| GATGAGTACATCAACAACCT+CGG | 0.687569 | 3_4:-65083244 | None:intergenic |
| ATGCTACAACAGCAGCAGTG+AGG | 0.688425 | 3_4:+65083034 | Msa0514400:CDS |
| AATTTCATGTGATAGAATGT+GGG | 0.694020 | 3_4:+65082979 | Msa0514400:intron |
| TCGGTGAAGAGGATTCCCCT+CGG | 0.695815 | 3_4:-65085544 | None:intergenic |
| CTTGTTGATGCAGCTCATCG+CGG | 0.711378 | 3_4:+65081709 | Msa0514400:CDS |
| ATATTAGTACTTTAACCGAG+GGG | 0.718701 | 3_4:+65085529 | Msa0514400:CDS |
| GTAAATGTGAGATTGTTCCG+GGG | 0.747988 | 3_4:+65083009 | Msa0514400:CDS |
| AGGGCATGTATTGCAACACG+AGG | 0.751125 | 3_4:-65083195 | None:intergenic |
| TTGTTGCAGAGGATTCACCG+AGG | 0.802394 | 3_4:+65083227 | Msa0514400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAACTGATTTTTTTTTTTT+TGG | + | chr3_4:65082367-65082386 | Msa0514400:intron | 10.0% |
| !! | TTATAAACATAATTACATAT+TGG | - | chr3_4:65082520-65082539 | None:intergenic | 10.0% |
| !! | ATATAATTACATTTATTTGA+GGG | - | chr3_4:65083332-65083351 | None:intergenic | 10.0% |
| !! | AATATAATTACATTTATTTG+AGG | - | chr3_4:65083333-65083352 | None:intergenic | 10.0% |
| !!! | TATTTTAATTTGTTAACTTT+TGG | + | chr3_4:65084142-65084161 | Msa0514400:intron | 10.0% |
| !!! | ATTTTAATTTGTTAACTTTT+GGG | + | chr3_4:65084143-65084162 | Msa0514400:intron | 10.0% |
| !! | AAACTAATATTAATCTAATA+CGG | - | chr3_4:65084377-65084396 | None:intergenic | 10.0% |
| !! | TTGAAAAATTATTAAAAGAA+GGG | + | chr3_4:65085595-65085614 | Msa0514400:CDS | 10.0% |
| !! | AAAAAAAGAAAGAAGATAAA+TGG | - | chr3_4:65082681-65082700 | None:intergenic | 15.0% |
| !!! | AATTCAATTTAGAGTTAAAA+GGG | - | chr3_4:65082834-65082853 | None:intergenic | 15.0% |
| !!! | AAATTCAATTTAGAGTTAAA+AGG | - | chr3_4:65082835-65082854 | None:intergenic | 15.0% |
| !! | AAAACTTAGTTAATAATGAA+TGG | - | chr3_4:65082956-65082975 | None:intergenic | 15.0% |
| !!! | ATTCATTATTAACTAAGTTT+TGG | + | chr3_4:65082955-65082974 | Msa0514400:intron | 15.0% |
| !!! | TTCATTATTAACTAAGTTTT+GGG | + | chr3_4:65082956-65082975 | Msa0514400:intron | 15.0% |
| !! | TATAATTACATTTATTTGAG+GGG | - | chr3_4:65083331-65083350 | None:intergenic | 15.0% |
| !! | AATATATTACATTTAGTTGA+GGG | - | chr3_4:65083410-65083429 | None:intergenic | 15.0% |
| !! | ATATGATTATATTTAGTTGA+GGG | - | chr3_4:65083487-65083506 | None:intergenic | 15.0% |
| !! | AATATGATTATATTTAGTTG+AGG | - | chr3_4:65083488-65083507 | None:intergenic | 15.0% |
| !! | TATAATTTATCAAAAAACAG+TGG | + | chr3_4:65083604-65083623 | Msa0514400:intron | 15.0% |
| !!! | GTTATTTGATTTAGTAAAAA+AGG | + | chr3_4:65083665-65083684 | Msa0514400:intron | 15.0% |
| !!! | TGTTTTCTTTTTAAAATTTC+TGG | + | chr3_4:65083781-65083800 | Msa0514400:intron | 15.0% |
| !! | TAGTAATCAATTATATTCAT+AGG | - | chr3_4:65083840-65083859 | None:intergenic | 15.0% |
| !! | TAATAATTGATTAATTGTGT+TGG | + | chr3_4:65084094-65084113 | Msa0514400:intron | 15.0% |
| !!! | TTGAATATACTTTTAAGTAA+TGG | + | chr3_4:65084850-65084869 | Msa0514400:CDS | 15.0% |
| !! | ATCAATCTTAAAAACAAATA+TGG | + | chr3_4:65085405-65085424 | Msa0514400:CDS | 15.0% |
| !!! | AAATAAGGAAAATTTTCATA+AGG | + | chr3_4:65085470-65085489 | Msa0514400:CDS | 15.0% |
| !! | GTTGAAAAATTATTAAAAGA+AGG | + | chr3_4:65085594-65085613 | Msa0514400:CDS | 15.0% |
| !!! | ATTTTCGAAAACACAAAATA+AGG | - | chr3_4:65081974-65081993 | None:intergenic | 20.0% |
| !! | ATATTTCAACAATGTTAGTA+AGG | + | chr3_4:65082419-65082438 | Msa0514400:intron | 20.0% |
| !!! | TTTTTCTATCCTTATTCTTT+CGG | + | chr3_4:65082614-65082633 | Msa0514400:intron | 20.0% |
| !! | TCATAACATTTAAATGTGTT+CGG | - | chr3_4:65082713-65082732 | None:intergenic | 20.0% |
| !! | ACATACACTAGTAATTATAA+TGG | - | chr3_4:65083279-65083298 | None:intergenic | 20.0% |
| !! | ATATATTACATTTAGTTGAG+GGG | - | chr3_4:65083409-65083428 | None:intergenic | 20.0% |
| !! | GAATATATTACATTTAGTTG+AGG | - | chr3_4:65083411-65083430 | None:intergenic | 20.0% |
| !! | TATGATTATATTTAGTTGAG+GGG | - | chr3_4:65083486-65083505 | None:intergenic | 20.0% |
| !! | TTATAAATGATAGAACCAAT+AGG | - | chr3_4:65083589-65083608 | None:intergenic | 20.0% |
| !! | AGTAGAAATAGAAGAAAAAA+TGG | + | chr3_4:65083710-65083729 | Msa0514400:intron | 20.0% |
| !! | TTATTAAAGAATATACGTAG+GGG | - | chr3_4:65083755-65083774 | None:intergenic | 20.0% |
| !! | CTTATTAAAGAATATACGTA+GGG | - | chr3_4:65083756-65083775 | None:intergenic | 20.0% |
| !! | TCTTATTAAAGAATATACGT+AGG | - | chr3_4:65083757-65083776 | None:intergenic | 20.0% |
| !! | ATAAGTAATAAACTTCACAT+GGG | + | chr3_4:65084045-65084064 | Msa0514400:intron | 20.0% |
| !! | AATGTGATATTAAAAATGAG+AGG | + | chr3_4:65085724-65085743 | Msa0514400:CDS | 20.0% |
| !! | GTATGAAGAGTTTAAAATTG+AGG | + | chr3_4:65081864-65081883 | Msa0514400:CDS | 25.0% |
| !!! | GATTATTTGAAACGTGATTT+TGG | + | chr3_4:65082013-65082032 | Msa0514400:intron | 25.0% |
| ! | GAAAACAGTTAAAAATGTGA+CGG | + | chr3_4:65082271-65082290 | Msa0514400:intron | 25.0% |
| ! | AAAAATCAGTTTAGAAACCA+GGG | - | chr3_4:65082360-65082379 | None:intergenic | 25.0% |
| ! | AAAAAATCAGTTTAGAAACC+AGG | - | chr3_4:65082361-65082380 | None:intergenic | 25.0% |
| ! | AATGTTAGTAAGGCAATAAT+TGG | + | chr3_4:65082429-65082448 | Msa0514400:intron | 25.0% |
| !!! | GTTGGATTTATTTTCATGTA+TGG | + | chr3_4:65082575-65082594 | Msa0514400:intron | 25.0% |
| ! | TTGGATAGAAAGATCAAATA+TGG | - | chr3_4:65082649-65082668 | None:intergenic | 25.0% |
| ! | AGATAAATGGAATTTAGTGT+TGG | - | chr3_4:65082668-65082687 | None:intergenic | 25.0% |
| !! | ATTACTAATTTGTCTGATGT+AGG | + | chr3_4:65082772-65082791 | Msa0514400:intron | 25.0% |
| ! | AATTTCATGTGATAGAATGT+GGG | + | chr3_4:65082979-65082998 | Msa0514400:intron | 25.0% |
| ! | ATGGATACATTTATAAGTCA+AGG | + | chr3_4:65083375-65083394 | Msa0514400:intron | 25.0% |
| ! | ATTTATCAAAAAACAGTGGA+AGG | + | chr3_4:65083608-65083627 | Msa0514400:intron | 25.0% |
| !!! | TACTAAATGACACTTTTTCT+TGG | + | chr3_4:65083855-65083874 | Msa0514400:intron | 25.0% |
| !!! | ACTAAATGACACTTTTTCTT+GGG | + | chr3_4:65083856-65083875 | Msa0514400:intron | 25.0% |
| ! | GATAAGTAATAAACTTCACA+TGG | + | chr3_4:65084044-65084063 | Msa0514400:intron | 25.0% |
| ! | AAGCTAAGATATACTATCAA+AGG | - | chr3_4:65084196-65084215 | None:intergenic | 25.0% |
| !! | CCTTACAAATCAATTTTGTA+CGG | - | chr3_4:65084241-65084260 | None:intergenic | 25.0% |
| ! | AAGAGGATATGTTGAAAAAA+GGG | - | chr3_4:65084286-65084305 | None:intergenic | 25.0% |
| ! | TAAGAGGATATGTTGAAAAA+AGG | - | chr3_4:65084287-65084306 | None:intergenic | 25.0% |
| ! | CGTGTTTATAAAGAGAAAAA+AGG | - | chr3_4:65084431-65084450 | None:intergenic | 25.0% |
| !! | TTTTTCTCTTTATAAACACG+TGG | + | chr3_4:65084431-65084450 | Msa0514400:intron | 25.0% |
| !! | TTTTCTCTTTATAAACACGT+GGG | + | chr3_4:65084432-65084451 | Msa0514400:intron | 25.0% |
| !!! | TATACTTTTAAGTAATGGTG+TGG | + | chr3_4:65084855-65084874 | Msa0514400:CDS | 25.0% |
| ! | ATTCTGGATATAATTAGATC+TGG | + | chr3_4:65085171-65085190 | Msa0514400:CDS | 25.0% |
| ! | GATATAATTAGATCTGGAAA+AGG | + | chr3_4:65085177-65085196 | Msa0514400:CDS | 25.0% |
| ! | GTTCATCTAGATTTATATTC+CGG | - | chr3_4:65085293-65085312 | None:intergenic | 25.0% |
| !!! | TTTCCTTATTTTCACCATTT+TGG | - | chr3_4:65085461-65085480 | None:intergenic | 25.0% |
| ! | TTTGAATATGCCCTTAAAAA+GGG | + | chr3_4:65085498-65085517 | Msa0514400:CDS | 25.0% |
| ! | AATATTAGTACTTTAACCGA+GGG | + | chr3_4:65085528-65085547 | Msa0514400:CDS | 25.0% |
| !!! | TGTGAGATTTTGATATCTTA+CGG | + | chr3_4:65085696-65085715 | Msa0514400:CDS | 25.0% |
| ACAAAATAAGGCAGAACATT+CGG | - | chr3_4:65081962-65081981 | None:intergenic | 30.0% | |
| GATTACAACAGTGATAATCA+TGG | - | chr3_4:65082039-65082058 | None:intergenic | 30.0% | |
| TCACATGTCATTGATACATT+GGG | - | chr3_4:65082323-65082342 | None:intergenic | 30.0% | |
| TTCACATGTCATTGATACAT+TGG | - | chr3_4:65082324-65082343 | None:intergenic | 30.0% | |
| AAAATCAGTTTAGAAACCAG+GGG | - | chr3_4:65082359-65082378 | None:intergenic | 30.0% | |
| TCCTTATTCTTTCGGATAAT+TGG | + | chr3_4:65082622-65082641 | Msa0514400:intron | 30.0% | |
| ACCAATTATCCGAAAGAATA+AGG | - | chr3_4:65082626-65082645 | None:intergenic | 30.0% | |
| AGAGTTAAAAGGGTAATTCA+TGG | - | chr3_4:65082824-65082843 | None:intergenic | 30.0% | |
| GAATTTCATGTGATAGAATG+TGG | + | chr3_4:65082978-65082997 | Msa0514400:intron | 30.0% | |
| ATGTAAATGTGAGATTGTTC+CGG | + | chr3_4:65083007-65083026 | Msa0514400:CDS | 30.0% | |
| GTAGATGATATCCAAAAAAG+CGG | - | chr3_4:65083302-65083321 | None:intergenic | 30.0% | |
| AAAATGGCTACACCAAAATT+TGG | + | chr3_4:65083726-65083745 | Msa0514400:intron | 30.0% | |
| ATGGGATAATAAACATGTCT+AGG | + | chr3_4:65084063-65084082 | Msa0514400:intron | 30.0% | |
| !! | CTTAGCTTTAACATATTGTC+TGG | + | chr3_4:65084208-65084227 | Msa0514400:intron | 30.0% |
| !! | CCGTACAAAATTGATTTGTA+AGG | + | chr3_4:65084238-65084257 | Msa0514400:intron | 30.0% |
| ! | TATTAACCGATCTCTAAAAG+AGG | + | chr3_4:65084557-65084576 | Msa0514400:intron | 30.0% |
| !! | TTAGTTCCTCTTTTAGAGAT+CGG | - | chr3_4:65084566-65084585 | None:intergenic | 30.0% |
| ! | ATTTTCTGATTTCTGCAATC+AGG | + | chr3_4:65084585-65084604 | Msa0514400:intron | 30.0% |
| CTAGATATCAAGGTCAAATT+AGG | + | chr3_4:65084619-65084638 | Msa0514400:CDS | 30.0% | |
| TCTTTCATTGTTACACATGA+TGG | - | chr3_4:65084827-65084846 | None:intergenic | 30.0% | |
| TTTAAGTAATGGTGTGGATA+CGG | + | chr3_4:65084861-65084880 | Msa0514400:CDS | 30.0% | |
| !! | ATTCTTCGGTGTTTGATTAA+TGG | + | chr3_4:65084958-65084977 | Msa0514400:CDS | 30.0% |
| GATTAATGGTAAGTGTAACT+TGG | + | chr3_4:65084972-65084991 | Msa0514400:CDS | 30.0% | |
| AGTTTATCAGAAAGCAATTC+TGG | + | chr3_4:65085155-65085174 | Msa0514400:CDS | 30.0% | |
| TGAAAAAACTCATCGAATAC+CGG | + | chr3_4:65085271-65085290 | Msa0514400:CDS | 30.0% | |
| GAACCAAAATGGTGAAAATA+AGG | + | chr3_4:65085455-65085474 | Msa0514400:CDS | 30.0% | |
| GTTTGAATATGCCCTTAAAA+AGG | + | chr3_4:65085497-65085516 | Msa0514400:CDS | 30.0% | |
| ! | ATTCAGACATCCCTTTTTAA+GGG | - | chr3_4:65085511-65085530 | None:intergenic | 30.0% |
| ! | TATTCAGACATCCCTTTTTA+AGG | - | chr3_4:65085512-65085531 | None:intergenic | 30.0% |
| GAATATTAGTACTTTAACCG+AGG | + | chr3_4:65085527-65085546 | Msa0514400:CDS | 30.0% | |
| ATATTAGTACTTTAACCGAG+GGG | + | chr3_4:65085529-65085548 | Msa0514400:CDS | 30.0% | |
| !!! | TATGATGTGAATGGTTTTGA+TGG | + | chr3_4:65085621-65085640 | Msa0514400:CDS | 30.0% |
| CTTGCTAGAGAAAATAACAA+AGG | + | chr3_4:65085765-65085784 | Msa0514400:CDS | 30.0% | |
| ATCTCTGTTTCGTAGTCAAT+TGG | - | chr3_4:65081679-65081698 | None:intergenic | 35.0% | |
| TGGATTCGCTAAACATTCAA+TGG | - | chr3_4:65081749-65081768 | None:intergenic | 35.0% | |
| TGAATGTTTAGCGAATCCAT+TGG | + | chr3_4:65081750-65081769 | Msa0514400:CDS | 35.0% | |
| ATGAAGTTAACATCCACCAA+TGG | - | chr3_4:65081769-65081788 | None:intergenic | 35.0% | |
| ! | TTGGTGGATGTTAACTTCAT+TGG | + | chr3_4:65081769-65081788 | Msa0514400:CDS | 35.0% |
| GGATGTTAACTTCATTGGAA+CGG | + | chr3_4:65081774-65081793 | Msa0514400:CDS | 35.0% | |
| GATGTTGAAGTCCAAAACAA+TGG | + | chr3_4:65081798-65081817 | Msa0514400:CDS | 35.0% | |
| TACACTGAATTTACTCGATG+AGG | - | chr3_4:65081847-65081866 | None:intergenic | 35.0% | |
| ! | TTCAATTTTGTGATTGCGCT+TGG | + | chr3_4:65082066-65082085 | Msa0514400:intron | 35.0% |
| AGCTGCAGTTTATCTGAAAA+CGG | - | chr3_4:65082132-65082151 | None:intergenic | 35.0% | |
| ! | TCAATTTAGCTCATCGTGAT+CGG | + | chr3_4:65082160-65082179 | Msa0514400:intron | 35.0% |
| ATGATTGCATTTGTCATGTC+CGG | + | chr3_4:65082190-65082209 | Msa0514400:intron | 35.0% | |
| ! | TGAATTTTCTTCTTTTCCCC+TGG | + | chr3_4:65082340-65082359 | Msa0514400:intron | 35.0% |
| TTCATGTATGGAACTATGTC+AGG | + | chr3_4:65082587-65082606 | Msa0514400:intron | 35.0% | |
| TCATGTATGGAACTATGTCA+GGG | + | chr3_4:65082588-65082607 | Msa0514400:intron | 35.0% | |
| TGTAAATGTGAGATTGTTCC+GGG | + | chr3_4:65083008-65083027 | Msa0514400:CDS | 35.0% | |
| GGAAGGCCATTTGAAAATAT+TGG | + | chr3_4:65083056-65083075 | Msa0514400:CDS | 35.0% | |
| AGGCCATTTGAAAATATTGG+AGG | + | chr3_4:65083059-65083078 | Msa0514400:CDS | 35.0% | |
| ! | GGACCTCCAATATTTTCAAA+TGG | - | chr3_4:65083065-65083084 | None:intergenic | 35.0% |
| ATATTGGAGGTCCTTATCAA+TGG | + | chr3_4:65083072-65083091 | Msa0514400:CDS | 35.0% | |
| TTTACTTGAAGCAAGCTATG+TGG | + | chr3_4:65083125-65083144 | Msa0514400:CDS | 35.0% | |
| TTACTTGAAGCAAGCTATGT+GGG | + | chr3_4:65083126-65083145 | Msa0514400:CDS | 35.0% | |
| GACATGTCAGACACTAAATA+TGG | + | chr3_4:65083356-65083375 | Msa0514400:intron | 35.0% | |
| TGATAGAACCAATAGGAGTT+GGG | - | chr3_4:65083582-65083601 | None:intergenic | 35.0% | |
| ATGATAGAACCAATAGGAGT+TGG | - | chr3_4:65083583-65083602 | None:intergenic | 35.0% | |
| TGGATGTTAATGCAATGGAT+AGG | + | chr3_4:65083897-65083916 | Msa0514400:CDS | 35.0% | |
| TCAACATTAGCGTGAAGAAA+TGG | - | chr3_4:65083944-65083963 | None:intergenic | 35.0% | |
| GAAACTTGACAGGCTAATAT+TGG | - | chr3_4:65084510-65084529 | None:intergenic | 35.0% | |
| ACACAATGTAGAAACTTGAC+AGG | - | chr3_4:65084520-65084539 | None:intergenic | 35.0% | |
| TGGTGTAAGACTAGATATCA+AGG | + | chr3_4:65084609-65084628 | Msa0514400:CDS | 35.0% | |
| !! | GTAGAGTATTTTGAATCCAC+TGG | + | chr3_4:65084727-65084746 | Msa0514400:CDS | 35.0% |
| TCACCTAATAGTTTCCACAT+TGG | + | chr3_4:65084781-65084800 | Msa0514400:CDS | 35.0% | |
| CTTCCAATGTGGAAACTATT+AGG | - | chr3_4:65084787-65084806 | None:intergenic | 35.0% | |
| TTGGATCATGCAACATTCTT+CGG | + | chr3_4:65084944-65084963 | Msa0514400:CDS | 35.0% | |
| TTGGACTCACAAACAAAGTT+TGG | + | chr3_4:65084991-65085010 | Msa0514400:CDS | 35.0% | |
| ! | ACAAACAAAGTTTGGTGACA+CGG | + | chr3_4:65084999-65085018 | Msa0514400:CDS | 35.0% |
| !! | CTACGAGTTTTAGTATCATC+AGG | + | chr3_4:65085060-65085079 | Msa0514400:CDS | 35.0% |
| !! | CAGTAGCAAGTTTTAATCAG+TGG | + | chr3_4:65085127-65085146 | Msa0514400:CDS | 35.0% |
| CTAGATGAACAAAACGCAAA+TGG | + | chr3_4:65085303-65085322 | Msa0514400:CDS | 35.0% | |
| CTCATAGACTTGAACCAAAA+TGG | + | chr3_4:65085444-65085463 | Msa0514400:CDS | 35.0% | |
| !! | GAAGGGTATTATGATGTGAA+TGG | + | chr3_4:65085612-65085631 | Msa0514400:CDS | 35.0% |
| !!! | GTGAATGGTTTTGATGGAAA+TGG | + | chr3_4:65085627-65085646 | Msa0514400:CDS | 35.0% |
| TTAGCAGCAAGAGAAAGTAA+TGG | + | chr3_4:65085666-65085685 | Msa0514400:CDS | 35.0% | |
| ATGTTTAGCGAATCCATTGG+TGG | + | chr3_4:65081753-65081772 | Msa0514400:CDS | 40.0% | |
| ! | AAGCACGATCTCCATTGTTT+TGG | - | chr3_4:65081812-65081831 | None:intergenic | 40.0% |
| ATAAGGCAGAACATTCGGAA+CGG | - | chr3_4:65081957-65081976 | None:intergenic | 40.0% | |
| CAGATAAACTGCAGCTTAGT+AGG | + | chr3_4:65082136-65082155 | Msa0514400:intron | 40.0% | |
| ATGAGTTTCATGCACAGAGA+TGG | - | chr3_4:65082245-65082264 | None:intergenic | 40.0% | |
| CATGTATGGAACTATGTCAG+GGG | + | chr3_4:65082589-65082608 | Msa0514400:intron | 40.0% | |
| GTAAATGTGAGATTGTTCCG+GGG | + | chr3_4:65083009-65083028 | Msa0514400:CDS | 40.0% | |
| GATGAGTACATCAACAACCT+CGG | - | chr3_4:65083247-65083266 | None:intergenic | 40.0% | |
| GGTTGTTGATGTACTCATCA+AGG | + | chr3_4:65083248-65083267 | Msa0514400:CDS | 40.0% | |
| !!! | CTAGTGTATGTCCGCTTTTT+TGG | + | chr3_4:65083288-65083307 | Msa0514400:intron | 40.0% |
| GACGTGTCAGACACTAAATA+TGG | + | chr3_4:65083433-65083452 | Msa0514400:intron | 40.0% | |
| CTTTGAACTTTGACTGACAG+AGG | - | chr3_4:65083462-65083481 | None:intergenic | 40.0% | |
| GACGTGTCAGACACTAAATA+TGG | + | chr3_4:65083433-65083452 | Msa0514400:intron | 40.0% | |
| AGAGACTAGACTTTGAACCT+TGG | - | chr3_4:65083550-65083569 | None:intergenic | 40.0% | |
| ! | ACGTAGGGGTTACCAAATTT+TGG | - | chr3_4:65083741-65083760 | None:intergenic | 40.0% |
| TGGAGTGGATGTTAATGCAA+TGG | + | chr3_4:65083892-65083911 | Msa0514400:CDS | 40.0% | |
| ! | CAATGCATTATTTGCTGCTG+TGG | + | chr3_4:65083967-65083986 | Msa0514400:CDS | 40.0% |
| TGTAGTTAGACTACTGTTGC+AGG | + | chr3_4:65084006-65084025 | Msa0514400:CDS | 40.0% | |
| TGGGCATGTCATTATCATCA+TGG | + | chr3_4:65084162-65084181 | Msa0514400:intron | 40.0% | |
| TGGTGTGTGGATAATTTGGT+TGG | + | chr3_4:65084326-65084345 | Msa0514400:intron | 40.0% | |
| TGTGTGGATAATTTGGTTGG+TGG | + | chr3_4:65084329-65084348 | Msa0514400:intron | 40.0% | |
| GTTTCATAGTCTGTCGATCA+GGG | - | chr3_4:65084355-65084374 | None:intergenic | 40.0% | |
| TCTGATTTCTGCAATCAGGT+TGG | + | chr3_4:65084589-65084608 | Msa0514400:intron | 40.0% | |
| TCAAGGTCAAATTAGGAGCT+TGG | + | chr3_4:65084626-65084645 | Msa0514400:CDS | 40.0% | |
| TCAAATTAGGAGCTTGGTCT+TGG | + | chr3_4:65084632-65084651 | Msa0514400:CDS | 40.0% | |
| ! | CAAATTAGGAGCTTGGTCTT+GGG | + | chr3_4:65084633-65084652 | Msa0514400:CDS | 40.0% |
| ACAGGAGAAGAATTTCGTGT+AGG | + | chr3_4:65084664-65084683 | Msa0514400:CDS | 40.0% | |
| GAAGAATTTCGTGTAGGTGT+TGG | + | chr3_4:65084670-65084689 | Msa0514400:CDS | 40.0% | |
| CATGTTGAGTATAGTACCAG+TGG | - | chr3_4:65084746-65084765 | None:intergenic | 40.0% | |
| TGTGGAAACTATTAGGTGAC+AGG | - | chr3_4:65084780-65084799 | None:intergenic | 40.0% | |
| ! | CATTGTTACACATGATGGTG+TGG | - | chr3_4:65084822-65084841 | None:intergenic | 40.0% |
| CATGTGAATAGGGTGTACAT+TGG | - | chr3_4:65084914-65084933 | None:intergenic | 40.0% | |
| CAATGTACACCCTATTCACA+TGG | + | chr3_4:65084912-65084931 | Msa0514400:CDS | 40.0% | |
| !! | CGGCATTGATGATTTGTACA+AGG | + | chr3_4:65085019-65085038 | Msa0514400:CDS | 40.0% |
| TTGGGGATAGTAAATTCGTC+CGG | + | chr3_4:65085090-65085109 | Msa0514400:CDS | 40.0% | |
| ! | TTCAAGGTACTTCTTCATGC+TGG | + | chr3_4:65085372-65085391 | Msa0514400:CDS | 40.0% |
| TCTCTTGCTGCTAACATCAA+TGG | - | chr3_4:65085660-65085679 | None:intergenic | 40.0% | |
| ACAAAGGAAATGATGCAGAG+CGG | + | chr3_4:65085781-65085800 | Msa0514400:CDS | 40.0% | |
| TGTTTCCTTAGCCCTGTACT+AGG | - | chr3_4:65081649-65081668 | None:intergenic | 45.0% | |
| ! | TGAGGTCACTGCTCTGTTTT+TGG | + | chr3_4:65081882-65081901 | Msa0514400:CDS | 45.0% |
| !!! | CTGTTTTTGGCTGCACATTC+TGG | + | chr3_4:65081895-65081914 | Msa0514400:CDS | 45.0% |
| GACTCTAATACGTAAGCTGC+TGG | + | chr3_4:65081924-65081943 | Msa0514400:CDS | 45.0% | |
| TAGCTTAGACGTCCAGATTG+TGG | + | chr3_4:65082547-65082566 | Msa0514400:intron | 45.0% | |
| AGCTTAGACGTCCAGATTGT+GGG | + | chr3_4:65082548-65082567 | Msa0514400:intron | 45.0% | |
| ATCCAACCAAACCCACAATC+TGG | - | chr3_4:65082562-65082581 | None:intergenic | 45.0% | |
| TTGGAGGTCCTTATCAATGG+TGG | + | chr3_4:65083075-65083094 | Msa0514400:CDS | 45.0% | |
| TGGAGGTCCTTATCAATGGT+GGG | + | chr3_4:65083076-65083095 | Msa0514400:CDS | 45.0% | |
| CATGTATTGCAACACGAGGA+CGG | - | chr3_4:65083194-65083213 | None:intergenic | 45.0% | |
| TCTGCAACAAGCAGAGACAA+GGG | - | chr3_4:65083217-65083236 | None:intergenic | 45.0% | |
| ! | ATGGATAGCTCTATCAGCCA+AGG | + | chr3_4:65083530-65083549 | Msa0514400:intron | 45.0% |
| TCACTAGACCCAACTCCTAT+TGG | + | chr3_4:65083571-65083590 | Msa0514400:intron | 45.0% | |
| ! | TCTTGGGTTTGTTTGCAGCA+TGG | + | chr3_4:65083872-65083891 | Msa0514400:intron | 45.0% |
| AGTTAGACTACTGTTGCAGG+TGG | + | chr3_4:65084009-65084028 | Msa0514400:intron | 45.0% | |
| GTTAGACTACTGTTGCAGGT+GGG | + | chr3_4:65084010-65084029 | Msa0514400:intron | 45.0% | |
| TTAGACTACTGTTGCAGGTG+GGG | + | chr3_4:65084011-65084030 | Msa0514400:intron | 45.0% | |
| CTCTTAGACCCAACACTGTT+CGG | + | chr3_4:65084301-65084320 | Msa0514400:intron | 45.0% | |
| !! | GGCTTGGTGTGTGGATAATT+TGG | + | chr3_4:65084322-65084341 | Msa0514400:intron | 45.0% |
| GGTTTCATAGTCTGTCGATC+AGG | - | chr3_4:65084356-65084375 | None:intergenic | 45.0% | |
| ! | TGGTCTTGGGAAACAGATAC+AGG | + | chr3_4:65084646-65084665 | Msa0514400:CDS | 45.0% |
| ! | CTGAGCCTTATCCAATCACA+TGG | + | chr3_4:65084698-65084717 | Msa0514400:CDS | 45.0% |
| GCACACCATGTGATTGGATA+AGG | - | chr3_4:65084706-65084725 | None:intergenic | 45.0% | |
| TCTACAGCACACCATGTGAT+TGG | - | chr3_4:65084712-65084731 | None:intergenic | 45.0% | |
| GCAAGAGAGTTCTTCCAATG+TGG | - | chr3_4:65084798-65084817 | None:intergenic | 45.0% | |
| AGTATCATCAGGAGCTGACT+TGG | + | chr3_4:65085071-65085090 | Msa0514400:CDS | 45.0% | |
| ! | GTATCATCAGGAGCTGACTT+GGG | + | chr3_4:65085072-65085091 | Msa0514400:CDS | 45.0% |
| !! | TATCATCAGGAGCTGACTTG+GGG | + | chr3_4:65085073-65085092 | Msa0514400:CDS | 45.0% |
| TACTGAAGTTGCGCAATGAC+CGG | - | chr3_4:65085112-65085131 | None:intergenic | 45.0% | |
| TGTCTCCATAACAAGCTGCT+CGG | - | chr3_4:65085566-65085585 | None:intergenic | 45.0% | |
| CAAAGGAAATGATGCAGAGC+GGG | + | chr3_4:65085782-65085801 | Msa0514400:CDS | 45.0% | |
| ! | CGTTGGTGAGTCCTAGTACA+GGG | + | chr3_4:65081635-65081654 | Msa0514400:CDS | 50.0% |
| TGAGTCCTAGTACAGGGCTA+AGG | + | chr3_4:65081641-65081660 | Msa0514400:CDS | 50.0% | |
| CTTGTTGATGCAGCTCATCG+CGG | + | chr3_4:65081709-65081728 | Msa0514400:CDS | 50.0% | |
| ATGCACACTCAGACACACAC+CGG | - | chr3_4:65082212-65082231 | None:intergenic | 50.0% | |
| AGACGTCCAGATTGTGGGTT+TGG | + | chr3_4:65082553-65082572 | Msa0514400:intron | 50.0% | |
| ! | GTCCAGATTGTGGGTTTGGT+TGG | + | chr3_4:65082557-65082576 | Msa0514400:intron | 50.0% |
| ATGCTACAACAGCAGCAGTG+AGG | + | chr3_4:65083034-65083053 | Msa0514400:CDS | 50.0% | |
| TGCTACAACAGCAGCAGTGA+GGG | + | chr3_4:65083035-65083054 | Msa0514400:CDS | 50.0% | |
| GGAGGTCCTTATCAATGGTG+GGG | + | chr3_4:65083077-65083096 | Msa0514400:CDS | 50.0% | |
| AACACGAGGACGGATCATGT+TGG | - | chr3_4:65083184-65083203 | None:intergenic | 50.0% | |
| AGGGCATGTATTGCAACACG+AGG | - | chr3_4:65083198-65083217 | None:intergenic | 50.0% | |
| CTCTGCAACAAGCAGAGACA+AGG | - | chr3_4:65083218-65083237 | None:intergenic | 50.0% | |
| ! | CTTGTCTCTGCTTGTTGCAG+AGG | + | chr3_4:65083216-65083235 | Msa0514400:CDS | 50.0% |
| TTGTTGCAGAGGATTCACCG+AGG | + | chr3_4:65083227-65083246 | Msa0514400:CDS | 50.0% | |
| ! | GGTTTGTTTGCAGCATGGAG+TGG | + | chr3_4:65083877-65083896 | Msa0514400:intron | 50.0% |
| ! | TATTTGCTGCTGTGGTCAGC+AGG | + | chr3_4:65083975-65083994 | Msa0514400:CDS | 50.0% |
| ! | CGAACAGTGTTGGGTCTAAG+AGG | - | chr3_4:65084303-65084322 | None:intergenic | 50.0% |
| ACACCAAGCCGAACAGTGTT+GGG | - | chr3_4:65084312-65084331 | None:intergenic | 50.0% | |
| CACTCGAGCGAATGACATAG+AGG | + | chr3_4:65085245-65085264 | Msa0514400:CDS | 50.0% | |
| GGGTAACGTGGAAGCTTTCA+AGG | + | chr3_4:65085356-65085375 | Msa0514400:CDS | 50.0% | |
| ! | TAACAAGCTGCTCGGTGAAG+AGG | - | chr3_4:65085558-65085577 | None:intergenic | 50.0% |
| !! | CTTCACCGAGCAGCTTGTTA+TGG | + | chr3_4:65085558-65085577 | Msa0514400:CDS | 50.0% |
| ! | GCGTTGGTGAGTCCTAGTAC+AGG | + | chr3_4:65081634-65081653 | Msa0514400:CDS | 55.0% |
| CTGCTGTTGTAGCATAGCCC+CGG | - | chr3_4:65083029-65083048 | None:intergenic | 55.0% | |
| ACAACAGCAGCAGTGAGGGA+AGG | + | chr3_4:65083039-65083058 | Msa0514400:CDS | 55.0% | |
| GTCGCAACTTGCATGCGAAG+AGG | + | chr3_4:65083101-65083120 | Msa0514400:CDS | 55.0% | |
| AGACCCAACACTGTTCGGCT+TGG | + | chr3_4:65084306-65084325 | Msa0514400:intron | 55.0% | |
| CACACCAAGCCGAACAGTGT+TGG | - | chr3_4:65084313-65084332 | None:intergenic | 55.0% | |
| !! | ACACTGTTCGGCTTGGTGTG+TGG | + | chr3_4:65084313-65084332 | Msa0514400:intron | 55.0% |
| GTCGCGCAGCCATGTGAATA+GGG | - | chr3_4:65084924-65084943 | None:intergenic | 55.0% | |
| AGTCGCGCAGCCATGTGAAT+AGG | - | chr3_4:65084925-65084944 | None:intergenic | 55.0% | |
| ATTCACATGGCTGCGCGACT+TGG | + | chr3_4:65084925-65084944 | Msa0514400:CDS | 55.0% | |
| TGTCATGATAGCTGCCGCAG+AGG | + | chr3_4:65085335-65085354 | Msa0514400:CDS | 55.0% | |
| GTCATGATAGCTGCCGCAGA+GGG | + | chr3_4:65085336-65085355 | Msa0514400:CDS | 55.0% | |
| AGCTTCCACGTTACCCTCTG+CGG | - | chr3_4:65085352-65085371 | None:intergenic | 55.0% | |
| TCGGTGAAGAGGATTCCCCT+CGG | - | chr3_4:65085547-65085566 | None:intergenic | 55.0% | |
| GCGACGCCCCACCATTGATA+AGG | - | chr3_4:65083086-65083105 | None:intergenic | 60.0% | |
| AGCTGCCGCAGAGGGTAACG+TGG | + | chr3_4:65085344-65085363 | Msa0514400:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 65081631 | 65085872 | 65081631 | ID=Msa0514400;Name=Msa0514400 |
| chr3_4 | mRNA | 65081631 | 65085872 | 65081631 | ID=Msa0514400-mRNA-1;Parent=Msa0514400;Name=Msa0514400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|664 |
| chr3_4 | exon | 65081631 | 65081945 | 65081631 | ID=Msa0514400-mRNA-1:exon:16497;Parent=Msa0514400-mRNA-1 |
| chr3_4 | exon | 65082994 | 65083269 | 65082994 | ID=Msa0514400-mRNA-1:exon:16498;Parent=Msa0514400-mRNA-1 |
| chr3_4 | exon | 65083890 | 65084027 | 65083890 | ID=Msa0514400-mRNA-1:exon:16499;Parent=Msa0514400-mRNA-1 |
| chr3_4 | exon | 65084607 | 65085872 | 65084607 | ID=Msa0514400-mRNA-1:exon:16500;Parent=Msa0514400-mRNA-1 |
| chr3_4 | CDS | 65081631 | 65081945 | 65081631 | ID=Msa0514400-mRNA-1:cds;Parent=Msa0514400-mRNA-1 |
| chr3_4 | CDS | 65082994 | 65083269 | 65082994 | ID=Msa0514400-mRNA-1:cds;Parent=Msa0514400-mRNA-1 |
| chr3_4 | CDS | 65083890 | 65084027 | 65083890 | ID=Msa0514400-mRNA-1:cds;Parent=Msa0514400-mRNA-1 |
| chr3_4 | CDS | 65084607 | 65085872 | 65084607 | ID=Msa0514400-mRNA-1:cds;Parent=Msa0514400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
