AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373660 MtrunA17_Chr3g0123131 97.544 570 14 0 1 570 1 570 0.0 1165
Msa0373660 MtrunA17_Chr8g0376881 61.606 573 162 10 1 561 12 538 0.0 650
Msa0373660 MtrunA17_Chr1g0161431 56.985 272 110 2 12 278 10 279 2.70e-96 306
Msa0373660 MtrunA17_Chr4g0067981 59.770 261 91 2 13 267 31 283 9.64e-93 298
Msa0373660 MtrunA17_Chr2g0294911 56.917 253 105 1 13 265 29 277 3.37e-90 290
Msa0373660 MtrunA17_Chr3g0137101 52.288 306 115 5 13 290 8 310 1.02e-87 284
Msa0373660 MtrunA17_Chr1g0149841 55.777 251 99 3 13 257 5 249 1.15e-80 261
Msa0373660 MtrunA17_Chr7g0275891 43.385 325 150 6 13 310 5 322 2.98e-75 243
Msa0373660 MtrunA17_Chr2g0304841 51.737 259 104 2 13 256 18 270 4.28e-74 249
Msa0373660 MtrunA17_Chr4g0074411 52.590 251 108 3 13 259 18 261 1.05e-73 246
Msa0373660 MtrunA17_Chr4g0074401 51.351 259 108 5 10 259 14 263 1.49e-72 243
Msa0373660 MtrunA17_Chr1g0149851 51.515 264 103 4 13 256 5 263 4.97e-71 238
Msa0373660 MtrunA17_Chr7g0275401 48.120 266 125 3 12 269 4 264 4.44e-69 224
Msa0373660 MtrunA17_Chr3g0134481 45.798 238 67 2 13 250 8 183 9.55e-60 196
Msa0373660 MtrunA17_Chr4g0009851 39.689 257 127 3 6 262 4 232 1.61e-58 197
Msa0373660 MtrunA17_Chr4g0009901 42.366 262 121 4 13 274 10 241 2.10e-58 196
Msa0373660 MtrunA17_Chr4g0074421 51.269 197 79 5 63 253 2 187 8.03e-54 181
Msa0373660 MtrunA17_Chr1g0149831 52.604 192 76 4 72 257 1 183 2.68e-52 178
Msa0373660 MtrunA17_Chr3g0134461 45.148 237 77 2 13 248 8 192 4.59e-51 174
Msa0373660 MtrunA17_Chr6g0471041 36.327 245 126 5 11 254 12 227 2.13e-43 160
Msa0373660 MtrunA17_Chr4g0009981 38.863 211 102 3 58 268 2 185 1.65e-42 153
Msa0373660 MtrunA17_Chr8g0391911 32.549 255 132 6 13 248 9 242 1.34e-33 128
Msa0373660 MtrunA17_Chr8g0383961 44.094 127 71 0 13 139 14 140 8.78e-29 115
Msa0373660 MtrunA17_Chr8g0350761 31.250 256 154 7 15 251 19 271 1.76e-26 112
Msa0373660 MtrunA17_Chr4g0011071 32.530 166 85 2 59 224 35 173 2.96e-26 105
Msa0373660 MtrunA17_Chr6g0456631 35.507 138 81 4 12 142 8 144 4.13e-24 99.4
Msa0373660 MtrunA17_Chr6g0473731 35.484 186 95 5 93 278 10 170 7.23e-24 104
Msa0373660 MtrunA17_Chr3g0127941 41.129 124 68 2 17 136 56 178 1.41e-23 105
Msa0373660 MtrunA17_Chr7g0276361 37.500 128 71 2 14 135 11 135 7.13e-21 96.7
Msa0373660 MtrunA17_Chr3g0091641 34.959 123 77 1 17 136 24 146 5.31e-20 94.0
Msa0373660 MtrunA17_Chr4g0061021 35.772 123 76 1 17 136 33 155 1.08e-19 92.8
Msa0373660 MtrunA17_Chr4g0030271 36.585 123 73 2 17 135 89 210 1.53e-19 92.8
Msa0373660 MtrunA17_Chr8g0345901 34.586 133 78 3 9 137 32 159 5.94e-19 90.9
Msa0373660 MtrunA17_Chr4g0009991 35.417 144 65 3 105 248 1 116 2.00e-18 81.6
Msa0373660 MtrunA17_Chr1g0181811 36.066 122 75 1 17 135 85 206 2.18e-18 89.0
Msa0373660 MtrunA17_Chr5g0423031 43.210 81 45 1 13 93 10 89 3.42e-18 82.8
Msa0373660 MtrunA17_Chr4g0031961 42.424 99 51 1 176 268 102 200 8.37e-17 81.6
Msa0373660 MtrunA17_Chr4g0010001 44.444 81 44 1 13 93 10 89 1.46e-16 75.1
Msa0373660 MtrunA17_Chr7g0223971 27.727 220 100 5 95 278 1 197 3.76e-16 81.6
Msa0373660 MtrunA17_Chr4g0054981 36.508 126 76 2 11 135 12 134 3.84e-16 81.6
Msa0373660 MtrunA17_Chr4g0054981 58.929 56 23 0 198 253 309 364 1.53e-13 73.6
Msa0373660 MtrunA17_Chr7g0255711 57.377 61 26 0 198 258 90 150 7.92e-16 78.6
Msa0373660 MtrunA17_Chr5g0400241 30.332 211 133 6 11 211 12 218 3.97e-14 75.1
Msa0373660 MtrunA17_Chr5g0400241 47.222 72 38 0 193 264 305 376 4.77e-14 75.1
Msa0373660 MtrunA17_Chr4g0059571 29.078 141 85 3 14 139 20 160 3.49e-13 68.9
Msa0373660 MtrunA17_Chr2g0324891 43.662 71 40 0 198 268 160 230 1.55e-12 69.7
Msa0373660 MtrunA17_Chr4g0040481 43.478 69 39 0 198 266 157 225 2.57e-12 68.9
Msa0373660 MtrunA17_Chr7g0256551 28.571 140 79 2 19 137 11 150 5.54e-12 65.9
Msa0373660 MtrunA17_Chr8g0352871 28.472 144 83 3 19 142 11 154 1.77e-11 63.2
Msa0373660 MtrunA17_Chr6g0461641 35.897 117 54 3 195 296 38 148 3.49e-11 65.5
Msa0373660 MtrunA17_Chr6g0469321 70.455 44 13 0 214 257 69 112 4.56e-11 62.0
Msa0373660 MtrunA17_Chr2g0321461 49.153 59 29 1 195 252 41 99 5.49e-11 64.7
Msa0373660 MtrunA17_Chr1g0198601 35.294 102 61 2 167 267 183 280 5.71e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373660 AT1G67710.1 51.020 441 150 11 14 438 8 398 9.51e-124 374
Msa0373660 AT3G16857.1 58.582 268 83 4 13 257 33 295 1.20e-90 293
Msa0373660 AT3G16857.2 58.582 268 83 4 13 257 33 295 1.54e-90 293
Msa0373660 AT2G01760.1 54.307 267 113 3 13 271 7 272 1.39e-85 271
Msa0373660 AT2G25180.1 56.641 256 101 3 13 265 13 261 2.36e-82 269
Msa0373660 AT1G67710.2 44.909 383 145 11 72 438 1 333 3.16e-82 265
Msa0373660 AT2G01760.2 41.514 383 169 7 13 344 7 385 1.68e-79 256
Msa0373660 AT4G31920.1 49.242 264 106 4 13 270 13 254 9.69e-75 248
Msa0373660 AT3G16857.3 56.769 229 71 4 52 257 2 225 4.42e-70 237
Msa0373660 AT5G58080.1 49.621 264 126 4 1 263 1 258 2.52e-67 230
Msa0373660 AT1G67710.3 41.598 363 146 11 92 438 12 324 1.41e-65 221
Msa0373660 AT2G01760.3 52.404 208 90 3 72 271 1 207 5.77e-59 199
Msa0373660 AT5G49240.1 40.161 249 133 5 6 248 34 272 4.47e-49 172
Msa0373660 AT1G49190.1 31.047 277 166 5 13 275 30 295 8.59e-37 142
Msa0373660 AT5G07210.2 32.727 275 141 5 17 257 16 280 2.07e-35 141
Msa0373660 AT5G07210.1 31.802 283 141 7 17 257 16 288 3.28e-33 134
Msa0373660 AT3G62670.1 35.833 240 135 6 18 251 42 268 7.93e-33 130
Msa0373660 AT2G27070.1 32.472 271 150 8 17 257 16 283 3.95e-32 131
Msa0373660 AT1G49190.2 41.600 125 73 0 13 137 30 154 7.04e-26 112
Msa0373660 AT1G68210.1 24.601 313 196 6 4 286 3 305 1.83e-22 102
Msa0373660 AT2G46790.3 38.211 123 71 2 17 135 37 158 6.37e-22 99.4
Msa0373660 AT2G46790.1 38.211 123 71 2 17 135 37 158 7.37e-22 99.4
Msa0373660 AT5G24470.1 37.600 125 73 2 16 136 49 172 7.44e-22 99.8
Msa0373660 AT5G60100.2 41.085 129 70 3 17 141 64 190 3.44e-21 97.8
Msa0373660 AT5G61380.1 37.398 123 74 1 17 136 19 141 1.21e-20 96.3
Msa0373660 AT5G60100.7 39.837 123 69 2 17 135 64 185 1.79e-20 94.4
Msa0373660 AT5G60100.6 39.837 123 69 2 17 135 64 185 1.79e-20 94.4
Msa0373660 AT5G60100.4 39.837 123 69 2 17 135 64 185 1.79e-20 94.4
Msa0373660 AT5G60100.5 39.837 123 69 2 17 135 64 185 3.13e-20 94.4
Msa0373660 AT5G60100.3 39.837 123 69 2 17 135 64 185 3.13e-20 94.4
Msa0373660 AT5G60100.1 39.837 123 69 2 17 135 64 185 3.13e-20 94.4
Msa0373660 AT5G59570.2 46.392 97 45 2 162 258 111 200 7.38e-18 85.1
Msa0373660 AT5G59570.1 46.392 97 45 2 162 258 111 200 7.38e-18 85.1
Msa0373660 AT5G02810.1 37.398 123 72 2 17 135 78 199 1.98e-17 86.7
Msa0373660 AT3G46640.2 51.899 79 37 1 190 267 135 213 6.48e-17 82.4
Msa0373660 AT3G46640.1 51.899 79 37 1 190 267 135 213 6.48e-17 82.4
Msa0373660 AT3G46640.3 51.899 79 37 1 190 267 135 213 1.12e-16 82.0
Msa0373660 AT2G40970.1 57.377 61 26 0 198 258 104 164 4.90e-16 78.6
Msa0373660 AT3G10760.1 57.377 61 26 0 198 258 104 164 6.97e-16 79.7
Msa0373660 AT5G05090.1 55.738 61 27 0 198 258 80 140 2.35e-15 77.0
Msa0373660 AT5G44190.2 46.154 78 42 0 198 275 146 223 2.39e-14 75.1
Msa0373660 AT5G44190.1 47.368 76 40 0 198 273 146 221 2.88e-14 75.1
Msa0373660 AT2G20570.1 36.667 120 71 2 158 272 107 226 2.95e-13 72.4
Msa0373660 AT4G18020.8 34.074 135 80 3 12 139 13 145 7.15e-13 71.6
Msa0373660 AT4G18020.8 37.383 107 56 2 156 253 246 350 1.88e-12 70.1
Msa0373660 AT4G18020.11 34.074 135 80 3 12 139 13 145 7.15e-13 71.6
Msa0373660 AT4G18020.11 37.383 107 56 2 156 253 246 350 1.88e-12 70.1
Msa0373660 AT4G18020.4 34.074 135 80 3 12 139 13 145 7.15e-13 71.6
Msa0373660 AT4G18020.4 37.383 107 56 2 156 253 246 350 1.88e-12 70.1
Msa0373660 AT4G18020.5 34.074 135 80 3 12 139 13 145 7.15e-13 71.6
Msa0373660 AT4G18020.5 37.383 107 56 2 156 253 246 350 1.88e-12 70.1
Msa0373660 AT4G18020.10 34.074 135 80 3 12 139 13 145 7.15e-13 71.6
Msa0373660 AT4G18020.10 37.383 107 56 2 156 253 246 350 1.88e-12 70.1
Msa0373660 AT4G18020.7 34.074 135 80 3 12 139 13 145 7.15e-13 71.6
Msa0373660 AT4G18020.7 37.383 107 56 2 156 253 246 350 1.88e-12 70.1
Msa0373660 AT4G18020.3 35.115 131 76 3 12 135 13 141 1.00e-12 71.2
Msa0373660 AT4G18020.3 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa0373660 AT4G18020.2 35.115 131 76 3 12 135 13 141 1.00e-12 71.2
Msa0373660 AT4G18020.2 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa0373660 AT4G18020.1 35.115 131 76 3 12 135 13 141 1.00e-12 71.2
Msa0373660 AT4G18020.1 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa0373660 AT4G18020.6 35.115 131 76 3 12 135 13 141 1.00e-12 71.2
Msa0373660 AT4G18020.6 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa0373660 AT4G18020.9 35.115 131 76 3 12 135 13 141 1.00e-12 71.2
Msa0373660 AT4G18020.9 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa0373660 AT3G57040.2 27.778 162 91 4 19 158 11 168 1.74e-12 67.8
Msa0373660 AT3G57040.1 27.778 162 91 4 19 158 11 168 1.74e-12 67.8
Msa0373660 AT2G20570.2 44.444 72 40 0 201 272 171 242 4.28e-12 68.9
Msa0373660 AT1G69580.1 42.857 84 47 1 186 268 21 104 2.04e-11 66.2
Msa0373660 AT1G69580.2 42.857 84 47 1 186 268 21 104 2.27e-11 65.9

Find 121 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATGCTGCTTGCCATTTA+AGG 0.123652 3_1:+72739395 None:intergenic
TTCTTTGTTGCCTTATAATA+AGG 0.193391 3_1:+72742401 None:intergenic
CGCAACTCTTTCATCCTTAT+AGG 0.193820 3_1:+72740943 None:intergenic
ACACGACGACAAAGAATTTC+TGG 0.206213 3_1:-72740743 Msa0373660:CDS
CTCCCAAAAGTAGGTTTCTT+TGG 0.223208 3_1:+72739091 None:intergenic
TTACTCATTGCCTTATTATA+AGG 0.223385 3_1:-72742411 Msa0373660:five_prime_UTR
TTCAACCTATTGCCCTTAAA+TGG 0.231156 3_1:-72739408 Msa0373660:CDS
CCTATTTCCACTACTAATTT+CGG 0.260366 3_1:-72739165 Msa0373660:CDS
ATATCCAAATTCTTGATTAT+AGG 0.265807 3_1:+72738756 None:intergenic
GGCAACATGTCTTCAGAAAA+AGG 0.266185 3_1:-72740912 Msa0373660:CDS
TCAAAAGATGTAGGAAATTT+CGG 0.268298 3_1:-72739771 Msa0373660:CDS
ATCATTCATCAGAAGGCTTC+CGG 0.270532 3_1:+72739200 None:intergenic
GGAATTTCAGTCCAAGAATA+TGG 0.271706 3_1:+72739483 None:intergenic
CTGAATAAGCAGGTAATATC+AGG 0.277996 3_1:+72738881 None:intergenic
TATTGAACAATTATAAAGAT+TGG 0.304100 3_1:-72738791 Msa0373660:three_prime_UTR
TCTGATTCGAGTGGGTTAAA+AGG 0.305989 3_1:+72739543 None:intergenic
CTTTCATCCTTATAGGCTTA+AGG 0.308983 3_1:+72740950 None:intergenic
TTACCAAAGAAACCTACTTT+TGG 0.311221 3_1:-72739094 Msa0373660:CDS
GAATGTTGCTAGCCACTTAC+AGG 0.318285 3_1:-72740182 Msa0373660:intron
CCGAAATTAGTAGTGGAAAT+AGG 0.318852 3_1:+72739165 None:intergenic
ACTATCTCCTTAAGCCTATA+AGG 0.322260 3_1:-72740957 Msa0373660:CDS
AGTATATATCCCTTTGTGTT+TGG 0.334763 3_1:+72742527 None:intergenic
ACGAGGACTTATATTTCTAT+TGG 0.343534 3_1:-72739044 Msa0373660:CDS
TGAAGCAGCTTCTGCACCTT+TGG 0.343997 3_1:-72739067 Msa0373660:CDS
ATTGAACAATTATAAAGATT+GGG 0.346199 3_1:-72738790 Msa0373660:three_prime_UTR
ACATGTCAACACCATATTCT+TGG 0.360381 3_1:-72739494 Msa0373660:CDS
TTATGCTGCTTGCCATTTAA+GGG 0.367070 3_1:+72739396 None:intergenic
GGAATGTGCAACAATTCCTT+TGG 0.372703 3_1:+72739635 None:intergenic
GTTGAATCATATAAGTGGTT+TGG 0.380619 3_1:+72738949 None:intergenic
GCTTGCCATTTAAGGGCAAT+AGG 0.380909 3_1:+72739403 None:intergenic
CAAAGAAAGCTCGAGTAGTT+TGG 0.384580 3_1:-72740708 Msa0373660:CDS
ATATCCGATCCTTTATACTT+TGG 0.391843 3_1:+72738607 None:intergenic
TGAAAGAGTTGCGAAATATA+TGG 0.396476 3_1:-72740933 Msa0373660:CDS
AACTTTGGTCAACAGAATAT+AGG 0.396927 3_1:-72739012 Msa0373660:CDS
TCATTCATCAGAAGGCTTCC+GGG 0.399221 3_1:+72739201 None:intergenic
GCGGGTTAACCAAAGTATAA+AGG 0.410704 3_1:-72738616 None:intergenic
TATTGGCATAATATGAACTT+TGG 0.411212 3_1:-72739027 Msa0373660:CDS
AGATTATTCAGTAATTGATC+AGG 0.414161 3_1:-72738926 Msa0373660:CDS
ACTTTGGTCAACAGAATATA+GGG 0.416874 3_1:-72739011 Msa0373660:CDS
TGTTGCTTGTTTGCTGAGTT+CGG 0.418693 3_1:+72739744 None:intergenic
GAATGTGCAACAATTCCTTT+GGG 0.430333 3_1:+72739636 None:intergenic
AGCATGCACTTGATGAGAAA+TGG 0.443162 3_1:-72740847 Msa0373660:CDS
GATTTACCTTCAAAAGATGT+AGG 0.444043 3_1:-72739780 Msa0373660:CDS
GACATCTTGCTCTGTTATAG+AGG 0.450734 3_1:+72739326 None:intergenic
GTTAAAGCAGTGAATCAGAT+TGG 0.453872 3_1:-72740661 Msa0373660:CDS
CTCAAGAAGTGTAATTATGA+AGG 0.461617 3_1:-72742225 Msa0373660:intron
AACTACTCGAGCTTTCTTTG+AGG 0.464350 3_1:+72740711 None:intergenic
TTGAACAATTATAAAGATTG+GGG 0.468210 3_1:-72738789 Msa0373660:three_prime_UTR
ATTGCAGCATGTATAAAAGT+AGG 0.473007 3_1:-72738735 Msa0373660:three_prime_UTR
TCATATCTTCTAAAGCAAAC+AGG 0.481173 3_1:+72740800 None:intergenic
AGTTTGAAACCGTCCATGTC+GGG 0.482203 3_1:+72741199 None:intergenic
AATTTGTTGTGCAGAAATAC+CGG 0.482831 3_1:-72739869 Msa0373660:intron
TCAAGGATCTTAAGCCATGT+TGG 0.493168 3_1:+72742255 None:intergenic
AATCTGTTGAATCATATAAG+TGG 0.495988 3_1:+72738944 None:intergenic
GGAACTTCTATGAGAAGTCC+TGG 0.496302 3_1:+72738970 None:intergenic
CTGCTTCACCTCCCAAAAGT+AGG 0.498434 3_1:+72739082 None:intergenic
TGTTCAATAATAGATGTAGT+TGG 0.504586 3_1:+72738805 None:intergenic
AGCTTCTGCACCTTTGGACG+AGG 0.507158 3_1:-72739061 Msa0373660:CDS
ATGTCTGAGTATTATGATCC+AGG 0.508275 3_1:-72738988 Msa0373660:CDS
TTGCAGCATGTATAAAAGTA+GGG 0.511262 3_1:-72738734 Msa0373660:three_prime_UTR
TGTGCATCAACGAATATTAG+TGG 0.517100 3_1:+72742473 None:intergenic
TTCAAACTTCTTGAGCATGT+TGG 0.518961 3_1:-72741184 Msa0373660:CDS
CTCTAAGCTTGCTTCGTGAA+AGG 0.524950 3_1:-72741261 Msa0373660:CDS
AAAATATGAATTGTAACTGC+GGG 0.524959 3_1:-72738634 Msa0373660:three_prime_UTR
CAAGAAAGACTACACTAGTT+CGG 0.525368 3_1:-72739265 Msa0373660:CDS
TGAGCATGTTGGACTTGAGA+TGG 0.531729 3_1:-72741173 Msa0373660:CDS
CCGTGGATGGAGAAACAAGC+AGG 0.533449 3_1:-72741011 Msa0373660:CDS
ATAGTAACATCACCTGTAAG+TGG 0.535698 3_1:+72740170 None:intergenic
AGAATGCTTCATTCCACTTG+AGG 0.537639 3_1:+72739803 None:intergenic
CCTGGAACAAAATAATAAGA+AGG 0.542375 3_1:+72738672 None:intergenic
GAACTGAAACAGAAGCAGCT+TGG 0.544464 3_1:-72742363 Msa0373660:five_prime_UTR
CCTGCTTGTTTCTCCATCCA+CGG 0.545386 3_1:+72741011 None:intergenic
TCATCAGAAGGCTTCCGGGT+TGG 0.548387 3_1:+72739205 None:intergenic
GAAGTCTACTCAAGTAAAGC+CGG 0.548598 3_1:+72739850 None:intergenic
GACAAATACAACTATTCTGA+AGG 0.548895 3_1:-72739705 Msa0373660:CDS
AGAAGGCTTCCGGGTTGGAA+AGG 0.554208 3_1:+72739210 None:intergenic
TAGGTTGATCATTCATCAGA+AGG 0.556205 3_1:+72739193 None:intergenic
GGATCAGAGATGTCTGAGGA+AGG 0.568011 3_1:-72740826 Msa0373660:CDS
GTAAACATGCCCGACATGGA+CGG 0.570099 3_1:-72741208 Msa0373660:CDS
GACACCTTTCCTTTCCAACC+CGG 0.571228 3_1:-72739219 Msa0373660:CDS
GTAGTGGAAATAGGTTGTGT+AGG 0.571324 3_1:+72739174 None:intergenic
AGGACTAGACCAAACACAAA+GGG 0.576648 3_1:-72742536 Msa0373660:five_prime_UTR
ATAGAAACTAAAAGTCATGA+AGG 0.577004 3_1:-72739663 Msa0373660:CDS
CGATGTAAACATGCCCGACA+TGG 0.580139 3_1:-72741212 Msa0373660:CDS
ATAGAGAACTGACTAATGAC+AGG 0.581856 3_1:+72741145 None:intergenic
GATTATTCAGTAATTGATCA+GGG 0.592158 3_1:-72738925 Msa0373660:CDS
TTGCTCTGTTATAGAGGGAA+CGG 0.593066 3_1:+72739332 None:intergenic
CTTGTATAGAAACAAAACCT+AGG 0.593384 3_1:-72739299 Msa0373660:CDS
ACAAGAACTCGTAAACCAGC+AGG 0.595339 3_1:+72742291 None:intergenic
TTCTTGTAATCATAAAACCT+AGG 0.596152 3_1:+72739282 None:intergenic
TAGATTTGATGAATGTTCCA+TGG 0.598681 3_1:-72740216 Msa0373660:CDS
TATTAGTGGTGGATAAGTAA+TGG 0.602951 3_1:+72742487 None:intergenic
AAATATAAGTCCTCGTCCAA+AGG 0.606067 3_1:+72739051 None:intergenic
ACATTCTCTCTACTCAGCCA+TGG 0.609214 3_1:+72740199 None:intergenic
TTGCTTCGTGAAAGGAAAGA+CGG 0.611540 3_1:-72741253 Msa0373660:CDS
AAGTTTGAAACCGTCCATGT+CGG 0.611862 3_1:+72741198 None:intergenic
TGAACAATTATAAAGATTGG+GGG 0.614567 3_1:-72738788 Msa0373660:three_prime_UTR
GATCAGAGATGTCTGAGGAA+GGG 0.615619 3_1:-72740825 Msa0373660:CDS
AAAGTCACTTGTTCATCTAG+AGG 0.616120 3_1:-72739436 Msa0373660:CDS
GATAGTCACATGCACCGTGT+TGG 0.616316 3_1:+72740974 None:intergenic
ACATCTTGCTCTGTTATAGA+GGG 0.617723 3_1:+72739327 None:intergenic
TGCAGCATGTATAAAAGTAG+GGG 0.621531 3_1:-72738733 Msa0373660:three_prime_UTR
GAAACAAGCAGGGTGATGAA+AGG 0.627020 3_1:-72741000 Msa0373660:CDS
CTCGAATCAGAACGAAAACG+TGG 0.629850 3_1:-72739531 Msa0373660:CDS
AGTCATGAAGGTAATCCCAA+AGG 0.634878 3_1:-72739651 Msa0373660:CDS
TATATACTAACATACGCCAC+AGG 0.646847 3_1:-72742512 Msa0373660:five_prime_UTR
TGAATAAGCAGGTAATATCA+GGG 0.650140 3_1:+72738882 None:intergenic
GCATCAACGAATATTAGTGG+TGG 0.650656 3_1:+72742476 None:intergenic
TGGTTTACGAGTTCTTGTTG+TGG 0.652536 3_1:-72742286 Msa0373660:CDS
CGTGGATGGAGAAACAAGCA+GGG 0.655838 3_1:-72741010 Msa0373660:CDS
TGTTCAGTGATGTCCGTGGA+TGG 0.656358 3_1:-72741024 Msa0373660:intron
AAATGGATCAGAGATGTCTG+AGG 0.657790 3_1:-72740830 Msa0373660:CDS
TAGGACTAGACCAAACACAA+AGG 0.665199 3_1:-72742537 Msa0373660:five_prime_UTR
GTGATGAAAGGTGTCCAACA+CGG 0.667153 3_1:-72740988 Msa0373660:CDS
TGGATAAGTAATGGTTCCTG+TGG 0.678696 3_1:+72742496 None:intergenic
ATGTCTTGCTAAGCAACATG+TGG 0.682204 3_1:+72741285 None:intergenic
GCAGCATGTATAAAAGTAGG+GGG 0.683854 3_1:-72738732 Msa0373660:three_prime_UTR
GCTTCCGGGTTGGAAAGGAA+AGG 0.684548 3_1:+72739215 None:intergenic
CCAGCAGGAAAATCGCGTCG+AGG 0.689105 3_1:+72742306 None:intergenic
ATGCTGTTCAGTGATGTCCG+TGG 0.714764 3_1:-72741028 Msa0373660:intron
TTGTGGATGATGATCCAACA+TGG 0.719364 3_1:-72742269 Msa0373660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTAAATTTATTGTTTTT+TGG - chr3_1:72739506-72739525 Msa0373660:CDS 10.0%
!!! TGTTATTTGTTTCATAATTT+TGG - chr3_1:72739100-72739119 Msa0373660:CDS 15.0%
!!! TTATATGCTTATTTGAATTT+TGG + chr3_1:72739200-72739219 None:intergenic 15.0%
!! AATTATAAACTATTTCCATA+GGG - chr3_1:72740787-72740806 Msa0373660:CDS 15.0%
!! TATTGAACAATTATAAAGAT+TGG - chr3_1:72742366-72742385 Msa0373660:five_prime_UTR 15.0%
!! ATTGAACAATTATAAAGATT+GGG - chr3_1:72742367-72742386 Msa0373660:five_prime_UTR 15.0%
!!! CAAAAAATTTTTGAAAGGTA+AGG + chr3_1:72739308-72739327 None:intergenic 20.0%
!!! TGCTACAAAAAATTTTTGAA+AGG + chr3_1:72739313-72739332 None:intergenic 20.0%
!! GAAAAACTTGAATTATTAGA+TGG - chr3_1:72739371-72739390 Msa0373660:CDS 20.0%
!!! TGCTATTTTTAAGACATAAA+AGG - chr3_1:72739446-72739465 Msa0373660:CDS 20.0%
!!! GCTATTTTTAAGACATAAAA+GGG - chr3_1:72739447-72739466 Msa0373660:CDS 20.0%
!!! TATTTTTCAGTCAAAATTGT+AGG - chr3_1:72739703-72739722 Msa0373660:CDS 20.0%
!! ATGAAAAAAGTAACAGAAAA+AGG + chr3_1:72739737-72739756 None:intergenic 20.0%
!!! CTTTTAATCAAATTGATCAA+AGG + chr3_1:72740081-72740100 None:intergenic 20.0%
!! CAATTATAAACTATTTCCAT+AGG - chr3_1:72740786-72740805 Msa0373660:CDS 20.0%
!!! ATCAAATCTAGTATTTTCTT+GGG + chr3_1:72740931-72740950 None:intergenic 20.0%
!!! CACAACAAATTTTTTATCAT+TGG + chr3_1:72741279-72741298 None:intergenic 20.0%
!! TTGAACAATTATAAAGATTG+GGG - chr3_1:72742368-72742387 Msa0373660:five_prime_UTR 20.0%
!!! TTTTCCTATAATCAAGAATT+TGG - chr3_1:72742397-72742416 Msa0373660:five_prime_UTR 20.0%
!! ATATCCAAATTCTTGATTAT+AGG + chr3_1:72742404-72742423 None:intergenic 20.0%
!! AAAAATATGAATTGTAACTG+CGG - chr3_1:72742522-72742541 Msa0373660:five_prime_UTR 20.0%
!! TTACTCATTGCCTTATTATA+AGG - chr3_1:72738746-72738765 Msa0373660:three_prime_UTR 25.0%
! TTCTTTGTTGCCTTATAATA+AGG + chr3_1:72738759-72738778 None:intergenic 25.0%
!! GTTTCAGTTCAAAAAAGTTT+TGG + chr3_1:72738784-72738803 None:intergenic 25.0%
! TAATTAGCACATAACAAAAG+AGG + chr3_1:72738982-72739001 None:intergenic 25.0%
! GTTTCTGAATTTAAATGTGT+TGG - chr3_1:72739128-72739147 Msa0373660:CDS 25.0%
! TTGGATTATAAAATGTCTCT+TGG - chr3_1:72739147-72739166 Msa0373660:CDS 25.0%
!!! TTCAAGTTTTTCTTGAAGAT+CGG + chr3_1:72739363-72739382 None:intergenic 25.0%
!! GAGGGTTATAAACAATATTT+TGG - chr3_1:72739399-72739418 Msa0373660:CDS 25.0%
!! AGATTAGCTAGAATCAAATT+CGG + chr3_1:72739491-72739510 None:intergenic 25.0%
! AAAAGTAACAGAAAAAGGAT+TGG + chr3_1:72739732-72739751 None:intergenic 25.0%
!! GTCACAGAATTAACAAATTT+TGG - chr3_1:72739792-72739811 Msa0373660:CDS 25.0%
! TGATAGTAAGTTTCTTGTTA+AGG - chr3_1:72740522-72740541 Msa0373660:intron 25.0%
!! AGGTTCTCTAAATTGTTATT+CGG - chr3_1:72740542-72740561 Msa0373660:intron 25.0%
!!! AGCTATTTCTTTAATCAAAG+AGG - chr3_1:72740692-72740711 Msa0373660:CDS 25.0%
!!! GCTATTTCTTTAATCAAAGA+GGG - chr3_1:72740693-72740712 Msa0373660:CDS 25.0%
! CTTAATTCAATAAACTCTTC+GGG + chr3_1:72740748-72740767 None:intergenic 25.0%
! GCTTAATTCAATAAACTCTT+CGG + chr3_1:72740749-72740768 None:intergenic 25.0%
! ATTAAGCTGAAAACAACTAA+AGG - chr3_1:72740762-72740781 Msa0373660:CDS 25.0%
!! CATCAAATCTAGTATTTTCT+TGG + chr3_1:72740932-72740951 None:intergenic 25.0%
!! ACTTCTTGAATATTTTCCTT+AGG - chr3_1:72741013-72741032 Msa0373660:CDS 25.0%
! CAAAAACAAGAGAAGTTAAA+AGG - chr3_1:72741203-72741222 Msa0373660:CDS 25.0%
!! AAATTTCCTACATCTTTTGA+AGG + chr3_1:72741386-72741405 None:intergenic 25.0%
! TCAAAAGATGTAGGAAATTT+CGG - chr3_1:72741386-72741405 Msa0373660:intron 25.0%
! ATAGAAACTAAAAGTCATGA+AGG - chr3_1:72741494-72741513 Msa0373660:intron 25.0%
! TTCTTGTAATCATAAAACCT+AGG + chr3_1:72741878-72741897 None:intergenic 25.0%
! TATTGGCATAATATGAACTT+TGG - chr3_1:72742130-72742149 Msa0373660:intron 25.0%
! AATCTGTTGAATCATATAAG+TGG + chr3_1:72742216-72742235 None:intergenic 25.0%
! AGATTATTCAGTAATTGATC+AGG - chr3_1:72742231-72742250 Msa0373660:CDS 25.0%
! GATTATTCAGTAATTGATCA+GGG - chr3_1:72742232-72742251 Msa0373660:CDS 25.0%
!!! ATTTTTTTTGCTGAATAAGC+AGG + chr3_1:72742289-72742308 None:intergenic 25.0%
! TGTTCAATAATAGATGTAGT+TGG + chr3_1:72742355-72742374 None:intergenic 25.0%
! TGAACAATTATAAAGATTGG+GGG - chr3_1:72742369-72742388 Msa0373660:five_prime_UTR 25.0%
! AAAATATGAATTGTAACTGC+GGG - chr3_1:72742523-72742542 Msa0373660:five_prime_UTR 25.0%
AGTATATATCCCTTTGTGTT+TGG + chr3_1:72738633-72738652 None:intergenic 30.0%
!! TATTAGTGGTGGATAAGTAA+TGG + chr3_1:72738673-72738692 None:intergenic 30.0%
! CTCAAGAAGTGTAATTATGA+AGG - chr3_1:72738932-72738951 Msa0373660:CDS 30.0%
GTTGATGTACTATACTACTA+AGG - chr3_1:72739020-72739039 Msa0373660:CDS 30.0%
CTACTAAGGATCTTCAAAAT+TGG - chr3_1:72739034-72739053 Msa0373660:CDS 30.0%
TGTCTTAAAAATAGCAGACA+TGG + chr3_1:72739442-72739461 None:intergenic 30.0%
TAAGACATAAAAGGGAACAA+AGG - chr3_1:72739455-72739474 Msa0373660:CDS 30.0%
! GGCATTGTTTATTGTTTCTT+TGG - chr3_1:72739527-72739546 Msa0373660:CDS 30.0%
TGAAAGAGTTGCGAAATATA+TGG - chr3_1:72740224-72740243 Msa0373660:CDS 30.0%
!! TCATATCTTCTAAAGCAAAC+AGG + chr3_1:72740360-72740379 None:intergenic 30.0%
! ATCTTTTCTTTTCTTCGTTG+AGG + chr3_1:72740383-72740402 None:intergenic 30.0%
TTATGCTTGACAATCACAAT+TGG + chr3_1:72740817-72740836 None:intergenic 30.0%
TGTAACAAGTGAATTCTGTT+TGG - chr3_1:72740894-72740913 Msa0373660:CDS 30.0%
TAGATTTGATGAATGTTCCA+TGG - chr3_1:72740941-72740960 Msa0373660:CDS 30.0%
!! GTTTCTTTCTAGAATTCCTA+AGG + chr3_1:72741032-72741051 None:intergenic 30.0%
!! AATTTGTTGTGCAGAAATAC+CGG - chr3_1:72741288-72741307 Msa0373660:CDS 30.0%
GATTTACCTTCAAAAGATGT+AGG - chr3_1:72741377-72741396 Msa0373660:intron 30.0%
GACAAATACAACTATTCTGA+AGG - chr3_1:72741452-72741471 Msa0373660:intron 30.0%
!!! TCTTTTTTGAGCTGTGTTTT+TGG + chr3_1:72741698-72741717 None:intergenic 30.0%
CTTGTATAGAAACAAAACCT+AGG - chr3_1:72741858-72741877 Msa0373660:intron 30.0%
CCTATTTCCACTACTAATTT+CGG - chr3_1:72741992-72742011 Msa0373660:intron 30.0%
! TTTTAAGCCGAAATTAGTAG+TGG + chr3_1:72742002-72742021 None:intergenic 30.0%
! TTACCAAAGAAACCTACTTT+TGG - chr3_1:72742063-72742082 Msa0373660:intron 30.0%
!! TACCAAAGAAACCTACTTTT+GGG - chr3_1:72742064-72742083 Msa0373660:intron 30.0%
! ACGAGGACTTATATTTCTAT+TGG - chr3_1:72742113-72742132 Msa0373660:intron 30.0%
AACTTTGGTCAACAGAATAT+AGG - chr3_1:72742145-72742164 Msa0373660:intron 30.0%
ACTTTGGTCAACAGAATATA+GGG - chr3_1:72742146-72742165 Msa0373660:intron 30.0%
GTTGAATCATATAAGTGGTT+TGG + chr3_1:72742211-72742230 None:intergenic 30.0%
TGAATAAGCAGGTAATATCA+GGG + chr3_1:72742278-72742297 None:intergenic 30.0%
ATTGCAGCATGTATAAAAGT+AGG - chr3_1:72742422-72742441 Msa0373660:five_prime_UTR 30.0%
TTGCAGCATGTATAAAAGTA+GGG - chr3_1:72742423-72742442 Msa0373660:five_prime_UTR 30.0%
CCTGGAACAAAATAATAAGA+AGG + chr3_1:72742488-72742507 None:intergenic 30.0%
!! CCTTCTTATTATTTTGTTCC+AGG - chr3_1:72742485-72742504 Msa0373660:five_prime_UTR 30.0%
!!! TTTTTTTTTCAAGCAAGTCC+TGG + chr3_1:72742506-72742525 None:intergenic 30.0%
TATATACTAACATACGCCAC+AGG - chr3_1:72738645-72738664 Msa0373660:three_prime_UTR 35.0%
TGTGCATCAACGAATATTAG+TGG + chr3_1:72738687-72738706 None:intergenic 35.0%
GGTCTCTCAAAAATGGATAA+TGG - chr3_1:72738815-72738834 Msa0373660:three_prime_UTR 35.0%
! ACTTCTTGAGCATCTTTTCA+AGG + chr3_1:72738922-72738941 None:intergenic 35.0%
! GTTTTTCTTGAAGATCGGAA+AGG + chr3_1:72739358-72739377 None:intergenic 35.0%
CTTGAATTATTAGATGGTGC+AGG - chr3_1:72739377-72739396 Msa0373660:CDS 35.0%
AATTATTAGATGGTGCAGGA+GGG - chr3_1:72739381-72739400 Msa0373660:CDS 35.0%
! CTTTGGAAATAACATGCCAA+TGG - chr3_1:72739544-72739563 Msa0373660:CDS 35.0%
ATGTTAGTGCATGTTACCAA+TGG + chr3_1:72739577-72739596 None:intergenic 35.0%
TTCAAACTTCTTGAGCATGT+TGG - chr3_1:72739973-72739992 Msa0373660:intron 35.0%
ATAGAGAACTGACTAATGAC+AGG + chr3_1:72740015-72740034 None:intergenic 35.0%
ACTATCTCCTTAAGCCTATA+AGG - chr3_1:72740200-72740219 Msa0373660:CDS 35.0%
CTTTCATCCTTATAGGCTTA+AGG + chr3_1:72740210-72740229 None:intergenic 35.0%
GTTAAAGCAGTGAATCAGAT+TGG - chr3_1:72740496-72740515 Msa0373660:intron 35.0%
ATAGTAACATCACCTGTAAG+TGG + chr3_1:72740990-72741009 None:intergenic 35.0%
GAACAAAAATCTTCCTCAAG+TGG - chr3_1:72741341-72741360 Msa0373660:intron 35.0%
GAATGTGCAACAATTCCTTT+GGG + chr3_1:72741524-72741543 None:intergenic 35.0%
! GAAAAAGAAAGAGCTTTGAC+TGG - chr3_1:72741554-72741573 Msa0373660:intron 35.0%
ACATGTCAACACCATATTCT+TGG - chr3_1:72741663-72741682 Msa0373660:intron 35.0%
GGAATTTCAGTCCAAGAATA+TGG + chr3_1:72741677-72741696 None:intergenic 35.0%
AAAGTCACTTGTTCATCTAG+AGG - chr3_1:72741721-72741740 Msa0373660:intron 35.0%
TTCAACCTATTGCCCTTAAA+TGG - chr3_1:72741749-72741768 Msa0373660:intron 35.0%
! TTATGCTGCTTGCCATTTAA+GGG + chr3_1:72741764-72741783 None:intergenic 35.0%
ACATCTTGCTCTGTTATAGA+GGG + chr3_1:72741833-72741852 None:intergenic 35.0%
CAAGAAAGACTACACTAGTT+CGG - chr3_1:72741892-72741911 Msa0373660:intron 35.0%
!! TAGGTTGATCATTCATCAGA+AGG + chr3_1:72741967-72741986 None:intergenic 35.0%
! CCGAAATTAGTAGTGGAAAT+AGG + chr3_1:72741995-72742014 None:intergenic 35.0%
AAATATAAGTCCTCGTCCAA+AGG + chr3_1:72742109-72742128 None:intergenic 35.0%
ATGTCTGAGTATTATGATCC+AGG - chr3_1:72742169-72742188 Msa0373660:intron 35.0%
CTGAATAAGCAGGTAATATC+AGG + chr3_1:72742279-72742298 None:intergenic 35.0%
TGCAGCATGTATAAAAGTAG+GGG - chr3_1:72742424-72742443 Msa0373660:five_prime_UTR 35.0%
TAGGACTAGACCAAACACAA+AGG - chr3_1:72738620-72738639 Msa0373660:three_prime_UTR 40.0%
AGGACTAGACCAAACACAAA+GGG - chr3_1:72738621-72738640 Msa0373660:three_prime_UTR 40.0%
TGGATAAGTAATGGTTCCTG+TGG + chr3_1:72738664-72738683 None:intergenic 40.0%
GCATCAACGAATATTAGTGG+TGG + chr3_1:72738684-72738703 None:intergenic 40.0%
TGGTTTACGAGTTCTTGTTG+TGG - chr3_1:72738871-72738890 Msa0373660:three_prime_UTR 40.0%
TTGTGGATGATGATCCAACA+TGG - chr3_1:72738888-72738907 Msa0373660:three_prime_UTR 40.0%
TCAAGGATCTTAAGCCATGT+TGG + chr3_1:72738905-72738924 None:intergenic 40.0%
GAATTATTAGATGGTGCAGG+AGG - chr3_1:72739380-72739399 Msa0373660:CDS 40.0%
TGGAAATAACATGCCAATGG+TGG - chr3_1:72739547-72739566 Msa0373660:CDS 40.0%
!! TACCAATGGATTACCACCAT+TGG + chr3_1:72739563-72739582 None:intergenic 40.0%
ATGTCTTGCTAAGCAACATG+TGG + chr3_1:72739875-72739894 None:intergenic 40.0%
TTGCTTCGTGAAAGGAAAGA+CGG - chr3_1:72739904-72739923 Msa0373660:intron 40.0%
! AAGTTTGAAACCGTCCATGT+CGG + chr3_1:72739962-72739981 None:intergenic 40.0%
CGCAACTCTTTCATCCTTAT+AGG + chr3_1:72740217-72740236 None:intergenic 40.0%
GGCAACATGTCTTCAGAAAA+AGG - chr3_1:72740245-72740264 Msa0373660:intron 40.0%
CTTCAGAAAAAGGATACACG+AGG - chr3_1:72740255-72740274 Msa0373660:intron 40.0%
AGCATGCACTTGATGAGAAA+TGG - chr3_1:72740310-72740329 Msa0373660:intron 40.0%
AAATGGATCAGAGATGTCTG+AGG - chr3_1:72740327-72740346 Msa0373660:intron 40.0%
ACACGACGACAAAGAATTTC+TGG - chr3_1:72740414-72740433 Msa0373660:intron 40.0%
AACTACTCGAGCTTTCTTTG+AGG + chr3_1:72740449-72740468 None:intergenic 40.0%
CAAAGAAAGCTCGAGTAGTT+TGG - chr3_1:72740449-72740468 Msa0373660:intron 40.0%
CTTTAATCAAAGAGGGAGTG+TGG - chr3_1:72740700-72740719 Msa0373660:CDS 40.0%
GCTTGACAATCACAATTGGA+AGG + chr3_1:72740813-72740832 None:intergenic 40.0%
GAATTCTGTTTGGCAGAAGT+TGG - chr3_1:72740904-72740923 Msa0373660:CDS 40.0%
GAAGTCTACTCAAGTAAAGC+CGG + chr3_1:72741310-72741329 None:intergenic 40.0%
AGAATGCTTCATTCCACTTG+AGG + chr3_1:72741357-72741376 None:intergenic 40.0%
! TGTTGCTTGTTTGCTGAGTT+CGG + chr3_1:72741416-72741435 None:intergenic 40.0%
AGTCATGAAGGTAATCCCAA+AGG - chr3_1:72741506-72741525 Msa0373660:intron 40.0%
GGAATGTGCAACAATTCCTT+TGG + chr3_1:72741525-72741544 None:intergenic 40.0%
! TCTTTCTTTTTCTGCAGCAG+TGG + chr3_1:72741546-72741565 None:intergenic 40.0%
!! TCTGATTCGAGTGGGTTAAA+AGG + chr3_1:72741617-72741636 None:intergenic 40.0%
!! GTTTTCGTTCTGATTCGAGT+GGG + chr3_1:72741625-72741644 None:intergenic 40.0%
! GTTATGCTGCTTGCCATTTA+AGG + chr3_1:72741765-72741784 None:intergenic 40.0%
TTGCTCTGTTATAGAGGGAA+CGG + chr3_1:72741828-72741847 None:intergenic 40.0%
GACATCTTGCTCTGTTATAG+AGG + chr3_1:72741834-72741853 None:intergenic 40.0%
ATCATTCATCAGAAGGCTTC+CGG + chr3_1:72741960-72741979 None:intergenic 40.0%
! GTAGTGGAAATAGGTTGTGT+AGG + chr3_1:72741986-72742005 None:intergenic 40.0%
CTCCCAAAAGTAGGTTTCTT+TGG + chr3_1:72742069-72742088 None:intergenic 40.0%
!! CAAAGAAACCTACTTTTGGG+AGG - chr3_1:72742067-72742086 Msa0373660:intron 40.0%
GCAGCATGTATAAAAGTAGG+GGG - chr3_1:72742425-72742444 Msa0373660:five_prime_UTR 40.0%
GAACTGAAACAGAAGCAGCT+TGG - chr3_1:72738794-72738813 Msa0373660:three_prime_UTR 45.0%
GCAGCTTGGTCTCTCAAAAA+TGG - chr3_1:72738808-72738827 Msa0373660:three_prime_UTR 45.0%
ACAAGAACTCGTAAACCAGC+AGG + chr3_1:72738869-72738888 None:intergenic 45.0%
GCTAGAATCAAATTCGGCGA+GGG + chr3_1:72739485-72739504 None:intergenic 45.0%
AGCTAGAATCAAATTCGGCG+AGG + chr3_1:72739486-72739505 None:intergenic 45.0%
TGCCAATGGTGGTAATCCAT+TGG - chr3_1:72739558-72739577 Msa0373660:CDS 45.0%
TATAGTTGAGACCCTAGCAG+TGG - chr3_1:72739608-72739627 Msa0373660:CDS 45.0%
AGTCTTAGATGCCACTGCTA+GGG + chr3_1:72739622-72739641 None:intergenic 45.0%
! CTCTAAGCTTGCTTCGTGAA+AGG - chr3_1:72739896-72739915 Msa0373660:intron 45.0%
! AGTTTGAAACCGTCCATGTC+GGG + chr3_1:72739961-72739980 None:intergenic 45.0%
TGAGCATGTTGGACTTGAGA+TGG - chr3_1:72739984-72740003 Msa0373660:intron 45.0%
GAAACAAGCAGGGTGATGAA+AGG - chr3_1:72740157-72740176 Msa0373660:intron 45.0%
!! GTGATGAAAGGTGTCCAACA+CGG - chr3_1:72740169-72740188 Msa0373660:intron 45.0%
GATCAGAGATGTCTGAGGAA+GGG - chr3_1:72740332-72740351 Msa0373660:intron 45.0%
CACTCGTTTAGCAATGTGCT+AGG + chr3_1:72740610-72740629 None:intergenic 45.0%
ATCACAATTGGAAGGCCCTA+TGG + chr3_1:72740805-72740824 None:intergenic 45.0%
ACATTCTCTCTACTCAGCCA+TGG + chr3_1:72740961-72740980 None:intergenic 45.0%
GAATGTTGCTAGCCACTTAC+AGG - chr3_1:72740975-72740994 Msa0373660:CDS 45.0%
!! CGTTTTCGTTCTGATTCGAG+TGG + chr3_1:72741626-72741645 None:intergenic 45.0%
CTCGAATCAGAACGAAAACG+TGG - chr3_1:72741626-72741645 Msa0373660:intron 45.0%
! GCTTGCCATTTAAGGGCAAT+AGG + chr3_1:72741757-72741776 None:intergenic 45.0%
TCATTCATCAGAAGGCTTCC+GGG + chr3_1:72741959-72741978 None:intergenic 45.0%
GGAACTTCTATGAGAAGTCC+TGG + chr3_1:72742190-72742209 None:intergenic 45.0%
GAGTCTTAGATGCCACTGCT+AGG + chr3_1:72739623-72739642 None:intergenic 50.0%
! AGCAGTGGCATCTAAGACTC+AGG - chr3_1:72739623-72739642 Msa0373660:CDS 50.0%
! GCAGTGGCATCTAAGACTCA+GGG - chr3_1:72739624-72739643 Msa0373660:CDS 50.0%
CGATGTAAACATGCCCGACA+TGG - chr3_1:72739945-72739964 Msa0373660:intron 50.0%
GTAAACATGCCCGACATGGA+CGG - chr3_1:72739949-72739968 Msa0373660:intron 50.0%
ATGCTGTTCAGTGATGTCCG+TGG - chr3_1:72740129-72740148 Msa0373660:intron 50.0%
TGTTCAGTGATGTCCGTGGA+TGG - chr3_1:72740133-72740152 Msa0373660:intron 50.0%
! CCTGCTTGTTTCTCCATCCA+CGG + chr3_1:72740149-72740168 None:intergenic 50.0%
CGTGGATGGAGAAACAAGCA+GGG - chr3_1:72740147-72740166 Msa0373660:intron 50.0%
GATAGTCACATGCACCGTGT+TGG + chr3_1:72740186-72740205 None:intergenic 50.0%
GGATCAGAGATGTCTGAGGA+AGG - chr3_1:72740331-72740350 Msa0373660:intron 50.0%
GACACCTTTCCTTTCCAACC+CGG - chr3_1:72741938-72741957 Msa0373660:intron 50.0%
CTGCTTCACCTCCCAAAAGT+AGG + chr3_1:72742078-72742097 None:intergenic 50.0%
TGAAGCAGCTTCTGCACCTT+TGG - chr3_1:72742090-72742109 Msa0373660:intron 50.0%
CCGTGGATGGAGAAACAAGC+AGG - chr3_1:72740146-72740165 Msa0373660:intron 55.0%
! GCTTCCGGGTTGGAAAGGAA+AGG + chr3_1:72741945-72741964 None:intergenic 55.0%
! AGAAGGCTTCCGGGTTGGAA+AGG + chr3_1:72741950-72741969 None:intergenic 55.0%
TCATCAGAAGGCTTCCGGGT+TGG + chr3_1:72741955-72741974 None:intergenic 55.0%
AGCTTCTGCACCTTTGGACG+AGG - chr3_1:72742096-72742115 Msa0373660:intron 55.0%
CCAGCAGGAAAATCGCGTCG+AGG + chr3_1:72738854-72738873 None:intergenic 60.0%
! CCTCGACGCGATTTTCCTGC+TGG - chr3_1:72738851-72738870 Msa0373660:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72738619 72742560 72738619 ID=Msa0373660;Name=Msa0373660
chr3_1 mRNA 72738619 72742560 72738619 ID=Msa0373660-mRNA-1;Parent=Msa0373660;Name=Msa0373660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=208|1|1|1|1|1|5|290|570
chr3_1 exon 72738619 72739877 72738619 ID=Msa0373660-mRNA-1:exon:16414;Parent=Msa0373660-mRNA-1
chr3_1 exon 72740183 72740259 72740183 ID=Msa0373660-mRNA-1:exon:16413;Parent=Msa0373660-mRNA-1
chr3_1 exon 72740653 72741039 72740653 ID=Msa0373660-mRNA-1:exon:16412;Parent=Msa0373660-mRNA-1
chr3_1 exon 72741158 72741310 72741158 ID=Msa0373660-mRNA-1:exon:16411;Parent=Msa0373660-mRNA-1
chr3_1 exon 72742226 72742560 72742226 ID=Msa0373660-mRNA-1:exon:16410;Parent=Msa0373660-mRNA-1
chr3_1 five_prime_UTR 72742353 72742560 72742353 ID=Msa0373660-mRNA-1:five_prime_utr;Parent=Msa0373660-mRNA-1
chr3_1 CDS 72742226 72742352 72742226 ID=Msa0373660-mRNA-1:cds;Parent=Msa0373660-mRNA-1
chr3_1 CDS 72741158 72741310 72741158 ID=Msa0373660-mRNA-1:cds;Parent=Msa0373660-mRNA-1
chr3_1 CDS 72740653 72741039 72740653 ID=Msa0373660-mRNA-1:cds;Parent=Msa0373660-mRNA-1
chr3_1 CDS 72740183 72740259 72740183 ID=Msa0373660-mRNA-1:cds;Parent=Msa0373660-mRNA-1
chr3_1 CDS 72738909 72739877 72738909 ID=Msa0373660-mRNA-1:cds;Parent=Msa0373660-mRNA-1
chr3_1 three_prime_UTR 72738619 72738908 72738619 ID=Msa0373660-mRNA-1:three_prime_utr;Parent=Msa0373660-mRNA-1
Gene Sequence

>Msa0373660

ATGGATAATGGTTGCTTCTCTTCGCCTCGACGCGATTTTCCTGCTGGTTTACGAGTTCTTGTTGTGGATGATGATCCAACATGGCTTAAGATCCTTGAAAAGATGCTCAAGAAGTGTAATTATGAAGTGACCACATGTTGCTTAGCAAGACATGCTCTAAGCTTGCTTCGTGAAAGGAAAGACGGATACGATATAGTGATCAGCGATGTAAACATGCCCGACATGGACGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCCGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTCCAACACGGTGCATGTGACTATCTCCTTAAGCCTATAAGGATGAAAGAGTTGCGAAATATATGGCAACATGTCTTCAGAAAAAGGATACACGAGGTTAGAGAATTTGAAAATTTTGAGAGTTTTGAGAGCATGCACTTGATGAGAAATGGATCAGAGATGTCTGAGGAAGGGAACCTGTTTGCTTTAGAAGATATGACCTCAACGAAGAAAAGAAAAGATGTAGATAGCAGACACGACGACAAAGAATTTCTGGATTCATCTTCCTCAAAGAAAGCTCGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTACAGAAATACCGGCTTTACTTGAGTAGACTTCAGAAAGATAACGAACAAAAATCTTCCTCAAGTGGAATGAAGCATTCTGATTTACCTTCAAAAGATGTAGGAAATTTCGGTTTTCCGAACTCAGCAAACAAGCAACAAAATGATGCTTCAATCGACAAATACAACTATTCTGAAGGAAGCTTACAACATCAGAACATAGAAACTAAAAGTCATGAAGGTAATCCCAAAGGAATTGTTGCACATTCCACTGCTGCAGAAAAAGAAAGAGCTTTGACTGGTAACATCACTGATGCAACAGACATTGCACTTAATAAACCTTTTAACCCACTCGAATCAGAACGAAAACGTGGAGCGTTTGATTGCAACATGTCAACACCATATTCTTGGACTGAAATTCCAAAAACACAGCTCAAAAAAGAACAAAAGTCACTTGTTCATCTAGAGGATAACTTCAACCTATTGCCCTTAAATGGCAAGCAGCATAACATTCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCCGTTCCCTCTATAACAGAGCAAGATGTCGCTGCTTGTATAGAAACAAAACCTAGGTTTTATGATTACAAGAAAGACTACACTAGTTCGGTGAGTTCAAGAAGAACTTCAGTTGACACCTTTCCTTTCCAACCCGGAAGCCTTCTGATGAATGATCAACCTACACAACCTATTTCCACTACTAATTTCGGCTTAAAAACACAGACATCTAATCTTAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTGGGAGGTGAAGCAGCTTCTGCACCTTTGGACGAGGACTTATATTTCTATTGGCATAATATGAACTTTGGTCAACAGAATATAGGGATGTCTGAGTATTATGATCCAGGACTTCTCATAGAAGTTCCAAACCACTTATATGATTCAACAGATTATTCAGTAATTGATCAGGGTCTATTCATAGCATGA
Protein sequence

>Msa0373660

MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVREFENFESFESMHLMRNGSEMSEEGNLFALEDMTSTKKRKDVDSRHDDKEFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSGMKHSDLPSKDVGNFGFPNSANKQQNDASIDKYNYSEGSLQHQNIETKSHEGNPKGIVAHSTAAEKERALTGNITDATDIALNKPFNPLESERKRGAFDCNMSTPYSWTEIPKTQLKKEQKSLVHLEDNFNLLPLNGKQHNIQVDQSQSIASISSVPSITEQDVAACIETKPRFYDYKKDYTSSVSSRRTSVDTFPFQPGSLLMNDQPTQPISTTNFGLKTQTSNLSCISDLESYQRNLLLGGEAASAPLDEDLYFYWHNMNFGQQNIGMSEYYDPGLLIEVPNHLYDSTDYSVIDQGLFIA*