AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1143080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143080 MtrunA17_Chr3g0123131 97.544 570 14 0 1 570 1 570 0.0 1165
Msa1143080 MtrunA17_Chr8g0376881 61.431 573 163 10 1 561 12 538 0.0 649
Msa1143080 MtrunA17_Chr1g0161431 56.985 272 110 2 12 278 10 279 1.66e-96 306
Msa1143080 MtrunA17_Chr4g0067981 59.770 261 91 2 13 267 31 283 9.84e-93 298
Msa1143080 MtrunA17_Chr2g0294911 56.917 253 105 1 13 265 29 277 2.33e-90 290
Msa1143080 MtrunA17_Chr3g0137101 52.288 306 115 5 13 290 8 310 4.63e-88 285
Msa1143080 MtrunA17_Chr1g0149841 55.777 251 99 3 13 257 5 249 1.24e-80 261
Msa1143080 MtrunA17_Chr7g0275891 43.385 325 150 6 13 310 5 322 7.97e-76 244
Msa1143080 MtrunA17_Chr2g0304841 51.737 259 104 2 13 256 18 270 3.59e-74 249
Msa1143080 MtrunA17_Chr4g0074411 52.590 251 108 3 13 259 18 261 1.08e-73 246
Msa1143080 MtrunA17_Chr4g0074401 51.351 259 108 5 10 259 14 263 1.55e-72 243
Msa1143080 MtrunA17_Chr1g0149851 51.515 264 103 4 13 256 5 263 3.95e-71 238
Msa1143080 MtrunA17_Chr7g0275401 48.120 266 125 3 12 269 4 264 5.38e-69 224
Msa1143080 MtrunA17_Chr3g0134481 45.798 238 67 2 13 250 8 183 9.15e-60 196
Msa1143080 MtrunA17_Chr4g0009851 39.689 257 127 3 6 262 4 232 1.64e-58 197
Msa1143080 MtrunA17_Chr4g0009901 42.366 262 121 4 13 274 10 241 2.00e-58 196
Msa1143080 MtrunA17_Chr4g0074421 51.269 197 79 5 63 253 2 187 7.70e-54 181
Msa1143080 MtrunA17_Chr1g0149831 52.604 192 76 4 72 257 1 183 2.88e-52 178
Msa1143080 MtrunA17_Chr3g0134461 45.148 237 77 2 13 248 8 192 4.63e-51 174
Msa1143080 MtrunA17_Chr6g0471041 36.327 245 126 5 11 254 12 227 2.33e-43 160
Msa1143080 MtrunA17_Chr4g0009981 38.863 211 102 3 58 268 2 185 1.53e-42 153
Msa1143080 MtrunA17_Chr8g0391911 32.549 255 132 6 13 248 9 242 1.17e-33 129
Msa1143080 MtrunA17_Chr8g0383961 44.094 127 71 0 13 139 14 140 8.52e-29 115
Msa1143080 MtrunA17_Chr8g0350761 31.250 256 154 7 15 251 19 271 1.56e-26 113
Msa1143080 MtrunA17_Chr4g0011071 32.927 164 83 3 59 222 35 171 2.38e-26 105
Msa1143080 MtrunA17_Chr6g0456631 35.507 138 81 4 12 142 8 144 4.26e-24 99.4
Msa1143080 MtrunA17_Chr6g0473731 35.484 186 95 5 93 278 10 170 7.16e-24 104
Msa1143080 MtrunA17_Chr3g0127941 41.129 124 68 2 17 136 56 178 1.43e-23 105
Msa1143080 MtrunA17_Chr7g0276361 37.500 128 71 2 14 135 11 135 6.82e-21 96.7
Msa1143080 MtrunA17_Chr3g0091641 34.959 123 77 1 17 136 24 146 5.55e-20 93.6
Msa1143080 MtrunA17_Chr4g0061021 35.772 123 76 1 17 136 33 155 1.15e-19 92.8
Msa1143080 MtrunA17_Chr4g0030271 36.585 123 73 2 17 135 89 210 1.35e-19 93.2
Msa1143080 MtrunA17_Chr8g0345901 34.586 133 78 3 9 137 32 159 6.21e-19 90.5
Msa1143080 MtrunA17_Chr1g0181811 36.066 122 75 1 17 135 85 206 1.89e-18 89.4
Msa1143080 MtrunA17_Chr4g0009991 35.417 144 65 3 105 248 1 116 2.36e-18 81.3
Msa1143080 MtrunA17_Chr5g0423031 43.210 81 45 1 13 93 10 89 3.42e-18 82.8
Msa1143080 MtrunA17_Chr4g0031961 42.424 99 51 1 176 268 102 200 8.44e-17 81.6
Msa1143080 MtrunA17_Chr4g0010001 44.444 81 44 1 13 93 10 89 1.61e-16 75.1
Msa1143080 MtrunA17_Chr4g0054981 36.508 126 76 2 11 135 12 134 3.64e-16 81.6
Msa1143080 MtrunA17_Chr4g0054981 58.929 56 23 0 198 253 309 364 1.53e-13 73.6
Msa1143080 MtrunA17_Chr7g0223971 27.727 220 100 5 95 278 1 197 3.89e-16 81.3
Msa1143080 MtrunA17_Chr7g0255711 57.377 61 26 0 198 258 90 150 8.30e-16 78.6
Msa1143080 MtrunA17_Chr5g0400241 36.220 127 75 3 11 135 12 134 3.73e-14 75.5
Msa1143080 MtrunA17_Chr5g0400241 47.222 72 38 0 193 264 305 376 4.56e-14 75.1
Msa1143080 MtrunA17_Chr4g0059571 29.078 141 85 3 14 139 20 160 3.62e-13 68.9
Msa1143080 MtrunA17_Chr2g0324891 43.662 71 40 0 198 268 160 230 1.59e-12 69.7
Msa1143080 MtrunA17_Chr4g0040481 43.478 69 39 0 198 266 157 225 2.64e-12 68.9
Msa1143080 MtrunA17_Chr7g0256551 28.571 140 79 2 19 137 11 150 5.49e-12 65.9
Msa1143080 MtrunA17_Chr8g0352871 28.472 144 83 3 19 142 11 154 1.61e-11 63.2
Msa1143080 MtrunA17_Chr6g0461641 35.897 117 54 3 195 296 38 148 3.39e-11 65.5
Msa1143080 MtrunA17_Chr6g0469321 70.455 44 13 0 214 257 69 112 4.61e-11 62.0
Msa1143080 MtrunA17_Chr1g0198601 34.167 120 70 3 167 285 183 294 5.08e-11 64.7
Msa1143080 MtrunA17_Chr2g0321461 49.153 59 29 1 195 252 41 99 5.44e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1143080 AT1G67710.1 51.247 441 149 11 14 438 8 398 2.08e-124 376
Msa1143080 AT3G16857.1 58.582 268 83 4 13 257 33 295 1.12e-90 293
Msa1143080 AT3G16857.2 58.582 268 83 4 13 257 33 295 1.71e-90 293
Msa1143080 AT2G01760.1 54.307 267 113 3 13 271 7 272 1.04e-85 271
Msa1143080 AT1G67710.2 45.170 383 144 11 72 438 1 333 5.77e-83 266
Msa1143080 AT2G25180.1 56.641 256 101 3 13 265 13 261 2.51e-82 269
Msa1143080 AT2G01760.2 41.514 383 169 7 13 344 7 385 1.30e-79 256
Msa1143080 AT4G31920.1 49.242 264 106 4 13 270 13 254 9.69e-75 248
Msa1143080 AT3G16857.3 56.769 229 71 4 52 257 2 225 4.80e-70 237
Msa1143080 AT5G58080.1 49.621 264 126 4 1 263 1 258 2.94e-67 230
Msa1143080 AT1G67710.3 41.873 363 145 11 92 438 12 324 2.96e-66 223
Msa1143080 AT2G01760.3 52.404 208 90 3 72 271 1 207 5.42e-59 199
Msa1143080 AT5G49240.1 40.161 249 133 5 6 248 34 272 4.29e-49 172
Msa1143080 AT1G49190.1 31.047 277 166 5 13 275 30 295 9.58e-37 141
Msa1143080 AT5G07210.2 32.727 275 141 5 17 257 16 280 1.96e-35 141
Msa1143080 AT5G07210.1 31.802 283 141 7 17 257 16 288 3.10e-33 134
Msa1143080 AT3G62670.1 35.833 240 135 6 18 251 42 268 8.08e-33 130
Msa1143080 AT2G27070.1 32.472 271 150 8 17 257 16 283 3.57e-32 131
Msa1143080 AT1G49190.2 41.600 125 73 0 13 137 30 154 7.11e-26 112
Msa1143080 AT1G68210.1 22.843 394 254 6 4 353 3 390 2.04e-22 102
Msa1143080 AT2G46790.3 38.211 123 71 2 17 135 37 158 6.43e-22 99.4
Msa1143080 AT2G46790.1 38.211 123 71 2 17 135 37 158 7.17e-22 99.4
Msa1143080 AT5G24470.1 37.600 125 73 2 16 136 49 172 7.51e-22 99.8
Msa1143080 AT5G60100.2 41.085 129 70 3 17 141 64 190 3.63e-21 97.4
Msa1143080 AT5G61380.1 37.398 123 74 1 17 136 19 141 1.14e-20 96.3
Msa1143080 AT5G60100.7 39.837 123 69 2 17 135 64 185 1.84e-20 94.4
Msa1143080 AT5G60100.6 39.837 123 69 2 17 135 64 185 1.84e-20 94.4
Msa1143080 AT5G60100.4 39.837 123 69 2 17 135 64 185 1.84e-20 94.4
Msa1143080 AT5G60100.5 39.837 123 69 2 17 135 64 185 2.99e-20 94.7
Msa1143080 AT5G60100.3 39.837 123 69 2 17 135 64 185 2.99e-20 94.7
Msa1143080 AT5G60100.1 39.837 123 69 2 17 135 64 185 2.99e-20 94.7
Msa1143080 AT5G59570.2 46.392 97 45 2 162 258 111 200 6.85e-18 85.1
Msa1143080 AT5G59570.1 46.392 97 45 2 162 258 111 200 6.85e-18 85.1
Msa1143080 AT5G02810.1 37.398 123 72 2 17 135 78 199 2.05e-17 86.7
Msa1143080 AT3G46640.2 51.899 79 37 1 190 267 135 213 6.66e-17 82.4
Msa1143080 AT3G46640.1 51.899 79 37 1 190 267 135 213 6.66e-17 82.4
Msa1143080 AT3G46640.3 51.899 79 37 1 190 267 135 213 1.07e-16 82.0
Msa1143080 AT2G40970.1 57.377 61 26 0 198 258 104 164 4.63e-16 78.6
Msa1143080 AT3G10760.1 57.377 61 26 0 198 258 104 164 7.17e-16 79.7
Msa1143080 AT5G05090.1 55.738 61 27 0 198 258 80 140 2.24e-15 77.0
Msa1143080 AT5G44190.2 47.368 76 40 0 198 273 146 221 2.52e-14 75.1
Msa1143080 AT5G44190.1 47.368 76 40 0 198 273 146 221 2.73e-14 75.5
Msa1143080 AT2G20570.1 36.667 120 71 2 158 272 107 226 3.12e-13 72.4
Msa1143080 AT4G18020.8 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa1143080 AT4G18020.8 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa1143080 AT4G18020.11 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa1143080 AT4G18020.11 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa1143080 AT4G18020.4 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa1143080 AT4G18020.4 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa1143080 AT4G18020.5 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa1143080 AT4G18020.5 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa1143080 AT4G18020.10 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa1143080 AT4G18020.10 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa1143080 AT4G18020.7 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa1143080 AT4G18020.7 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa1143080 AT4G18020.3 35.115 131 76 3 12 135 13 141 9.79e-13 71.2
Msa1143080 AT4G18020.3 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa1143080 AT4G18020.2 35.115 131 76 3 12 135 13 141 9.79e-13 71.2
Msa1143080 AT4G18020.2 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa1143080 AT4G18020.1 35.115 131 76 3 12 135 13 141 9.79e-13 71.2
Msa1143080 AT4G18020.1 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa1143080 AT4G18020.6 35.115 131 76 3 12 135 13 141 9.79e-13 71.2
Msa1143080 AT4G18020.6 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa1143080 AT4G18020.9 35.115 131 76 3 12 135 13 141 9.79e-13 71.2
Msa1143080 AT4G18020.9 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa1143080 AT3G57040.2 27.778 162 91 4 19 158 11 168 1.57e-12 67.8
Msa1143080 AT3G57040.1 27.778 162 91 4 19 158 11 168 1.57e-12 67.8
Msa1143080 AT2G20570.2 44.444 72 40 0 201 272 171 242 4.21e-12 68.9
Msa1143080 AT1G69580.1 42.857 84 47 1 186 268 21 104 2.06e-11 65.9
Msa1143080 AT1G69580.2 42.857 84 47 1 186 268 21 104 2.19e-11 65.9

Find 121 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATGCTGCTTGCCATTTA+AGG 0.123652 7_4:+18272994 None:intergenic
TTCTTTGTTGCCTTATAATA+AGG 0.193391 7_4:+18276002 None:intergenic
CGCAACTCTTTCATCCTTAT+AGG 0.193820 7_4:+18274542 None:intergenic
ACACGACGACAAAGAATTTC+TGG 0.206213 7_4:-18274342 Msa1143080:CDS
CTCCCAAAAGTAGGTTTCTT+TGG 0.223208 7_4:+18272690 None:intergenic
TTACTCATTGCCTTATTATA+AGG 0.223385 7_4:-18276012 Msa1143080:five_prime_UTR
TTCAACCTATTGCCCTTAAA+TGG 0.231156 7_4:-18273007 Msa1143080:CDS
ATCATTCATCATAAGGCTTC+CGG 0.251176 7_4:+18272799 None:intergenic
CCTATTTCCACTACTAATTT+CGG 0.260366 7_4:-18272764 Msa1143080:CDS
GGCAACATGTCTTCAGAAAA+AGG 0.266185 7_4:-18274511 Msa1143080:CDS
GGAATTTCAGTCCAAGAATA+TGG 0.271706 7_4:+18273082 None:intergenic
CTGAATAAGCAGGTAATATC+AGG 0.277996 7_4:+18272480 None:intergenic
TCAAAAGATGTAGGAAATTT+CGG 0.297315 7_4:-18273370 Msa1143080:CDS
TATTGAACAATTATAAAGAT+TGG 0.304100 7_4:-18272390 Msa1143080:three_prime_UTR
TCTGATTCGAGTGGGTTAAA+AGG 0.305989 7_4:+18273142 None:intergenic
CTTTCATCCTTATAGGCTTA+AGG 0.308983 7_4:+18274549 None:intergenic
AGATCCAAATTCTTGATTAT+AGG 0.309304 7_4:+18272355 None:intergenic
TTACCAAAGAAACCTACTTT+TGG 0.311221 7_4:-18272693 Msa1143080:CDS
GAATGTTGCTAGCCACTTAC+AGG 0.318285 7_4:-18273781 Msa1143080:intron
CCGAAATTAGTAGTGGAAAT+AGG 0.318852 7_4:+18272764 None:intergenic
ACTATCTCCTTAAGCCTATA+AGG 0.322260 7_4:-18274556 Msa1143080:CDS
TGAAGCAGCTTCTGCGCCTT+TGG 0.331281 7_4:-18272666 Msa1143080:CDS
AGTATATATCCCTTTGTGTT+TGG 0.334763 7_4:+18276128 None:intergenic
ACGAGGACTTATATTTCTAT+TGG 0.343534 7_4:-18272643 Msa1143080:CDS
ATTGAACAATTATAAAGATT+GGG 0.346199 7_4:-18272389 Msa1143080:three_prime_UTR
ACATGTCAACACCATATTCT+TGG 0.360381 7_4:-18273093 Msa1143080:CDS
TTATGCTGCTTGCCATTTAA+GGG 0.367070 7_4:+18272995 None:intergenic
GGAATGTGCAACAATTCCTT+TGG 0.372703 7_4:+18273234 None:intergenic
GTTGAATCATATAAGTGGTT+TGG 0.380619 7_4:+18272548 None:intergenic
GCTTGCCATTTAAGGGCAAT+AGG 0.380909 7_4:+18273002 None:intergenic
TCATTCATCATAAGGCTTCC+GGG 0.383196 7_4:+18272800 None:intergenic
CAAAGAAAGCTCGAGTAGTT+TGG 0.384580 7_4:-18274307 Msa1143080:CDS
ATATCCGATCCTTTATACTT+TGG 0.391843 7_4:+18272205 None:intergenic
TGAAAGAGTTGCGAAATATA+TGG 0.396476 7_4:-18274532 Msa1143080:CDS
AACTTTGGTCAACAGAATAT+AGG 0.396927 7_4:-18272611 Msa1143080:CDS
TAGGTTGATCATTCATCATA+AGG 0.400146 7_4:+18272792 None:intergenic
GCGGGTTAACCAAAGTATAA+AGG 0.410704 7_4:-18272214 None:intergenic
TATTGGCATAATATGAACTT+TGG 0.411212 7_4:-18272626 Msa1143080:CDS
ACTTTGGTCAACAGAATATA+GGG 0.416874 7_4:-18272610 Msa1143080:CDS
TGTTGCTTGTTTGCTGAGTT+CGG 0.418693 7_4:+18273343 None:intergenic
GAATGTGCAACAATTCCTTT+GGG 0.430333 7_4:+18273235 None:intergenic
AGCATGCACTTGATGAGAAA+TGG 0.443162 7_4:-18274446 Msa1143080:CDS
GATTTACCTTCAAAAGATGT+AGG 0.444043 7_4:-18273379 Msa1143080:CDS
GACATCTTGCTCTGTTATAG+AGG 0.450734 7_4:+18272925 None:intergenic
GTTAAAGCAGTGAATCAGAT+TGG 0.453872 7_4:-18274260 Msa1143080:CDS
CTCAAGAAGTGTAATTATGA+AGG 0.461617 7_4:-18275826 Msa1143080:intron
AACTACTCGAGCTTTCTTTG+AGG 0.464350 7_4:+18274310 None:intergenic
AGCTTCTGCGCCTTTGGACG+AGG 0.465782 7_4:-18272660 Msa1143080:CDS
TTGAACAATTATAAAGATTG+GGG 0.468210 7_4:-18272388 Msa1143080:three_prime_UTR
CTTGCAGCATGTATAAAAGT+AGG 0.474079 7_4:-18272334 Msa1143080:three_prime_UTR
TCATATCTTCTAAAGCAAAC+AGG 0.481173 7_4:+18274399 None:intergenic
AGTTTGAAACCGTCCATGTC+GGG 0.482203 7_4:+18274798 None:intergenic
AATTTGTTGTGCAGAAATAC+CGG 0.482831 7_4:-18273468 Msa1143080:intron
TCAAGGATCTTAAGCCATGT+TGG 0.493168 7_4:+18275856 None:intergenic
AATCTGTTGAATCATATAAG+TGG 0.495988 7_4:+18272543 None:intergenic
GGAACTTCTATGAGAAGTCC+TGG 0.496302 7_4:+18272569 None:intergenic
CTGCTTCACCTCCCAAAAGT+AGG 0.498434 7_4:+18272681 None:intergenic
TGTTCAATAATAGATGTAGT+TGG 0.504586 7_4:+18272404 None:intergenic
GATTATTCAGTAATTGATCA+AGG 0.504935 7_4:-18272524 Msa1143080:CDS
ATGTCTGAGTATTATGATCC+AGG 0.508275 7_4:-18272587 Msa1143080:CDS
TGTGCATCAACGAATATTAG+TGG 0.517100 7_4:+18276074 None:intergenic
CTGGAACAAAATAAATAAGA+AGG 0.518397 7_4:+18272271 None:intergenic
TTCAAACTTCTTGAGCATGT+TGG 0.518961 7_4:-18274783 Msa1143080:CDS
TTGCAGCATGTATAAAAGTA+GGG 0.519598 7_4:-18272333 Msa1143080:three_prime_UTR
CTCTAAGCTTGCTTCGTGAA+AGG 0.524950 7_4:-18274860 Msa1143080:CDS
AAAATATGAATTGTAACTGC+GGG 0.524959 7_4:-18272232 Msa1143080:three_prime_UTR
CAAGAAAGACTACACTAGTT+CGG 0.525368 7_4:-18272864 Msa1143080:CDS
TGAGCATGTTGGACTTGAGA+TGG 0.531729 7_4:-18274772 Msa1143080:CDS
CCGTGGATGGAGAAACAAGC+AGG 0.533449 7_4:-18274610 Msa1143080:CDS
ATAGTAACATCACCTGTAAG+TGG 0.535698 7_4:+18273769 None:intergenic
AGAATGCTTCATTCCACTTG+AGG 0.537639 7_4:+18273402 None:intergenic
GAACTGAAACAGAAGCAGCT+TGG 0.544464 7_4:-18275964 Msa1143080:five_prime_UTR
CCTGCTTGTTTCTCCATCCA+CGG 0.545386 7_4:+18274610 None:intergenic
TCATCATAAGGCTTCCGGGT+TGG 0.545654 7_4:+18272804 None:intergenic
GAAGTCTACTCAAGTAAAGC+CGG 0.548598 7_4:+18273449 None:intergenic
GACAAATACAACTATTCTGA+AGG 0.548895 7_4:-18273304 Msa1143080:CDS
ATAAGGCTTCCGGGTTGGAA+AGG 0.569730 7_4:+18272809 None:intergenic
GTAAACATGCCCGACATGGA+CGG 0.570099 7_4:-18274807 Msa1143080:CDS
TTGCTCTGTTATAGAGGGAG+CGG 0.570348 7_4:+18272931 None:intergenic
GACACCTTTCCTTTCCAACC+CGG 0.571228 7_4:-18272818 Msa1143080:CDS
GTAGTGGAAATAGGTTGTGT+AGG 0.571324 7_4:+18272773 None:intergenic
AGGACTAGACCAAACACAAA+GGG 0.576648 7_4:-18276137 Msa1143080:five_prime_UTR
ATAGAAACTAAAAGTCATGA+AGG 0.577004 7_4:-18273262 Msa1143080:CDS
CGATGTAAACATGCCCGACA+TGG 0.580139 7_4:-18274811 Msa1143080:CDS
GGATCAGAGATGTCTGAGGA+GGG 0.581360 7_4:-18274425 Msa1143080:CDS
ATAGAGAACTGACTAATGAC+AGG 0.581856 7_4:+18274744 None:intergenic
AAATATAAGTCCTCGTCCAA+AGG 0.586082 7_4:+18272650 None:intergenic
CTTGTATAGAAACAAAACCT+AGG 0.593384 7_4:-18272898 Msa1143080:CDS
ACAAGAACTCGTAAACCAGC+AGG 0.595339 7_4:+18275892 None:intergenic
TTCTTGTAATCATAAAACCT+AGG 0.596152 7_4:+18272881 None:intergenic
TAGATTTGATGAATGTTCCA+TGG 0.598681 7_4:-18273815 Msa1143080:CDS
TATTAGTGGTGGATAAGTAA+TGG 0.602951 7_4:+18276088 None:intergenic
ACATCTTGCTCTGTTATAGA+GGG 0.608912 7_4:+18272926 None:intergenic
ACATTCTCTCTACTCAGCCA+TGG 0.609214 7_4:+18273798 None:intergenic
TTGCTTCGTGAAAGGAAAGA+CGG 0.611540 7_4:-18274852 Msa1143080:CDS
AAGTTTGAAACCGTCCATGT+CGG 0.611862 7_4:+18274797 None:intergenic
TGGATCAGAGATGTCTGAGG+AGG 0.612409 7_4:-18274426 Msa1143080:CDS
TGAACAATTATAAAGATTGG+GGG 0.614567 7_4:-18272387 Msa1143080:three_prime_UTR
AAAGTCACTTGTTCATCTAG+AGG 0.616120 7_4:-18273035 Msa1143080:CDS
GATAGTCACATGCACCGTGT+TGG 0.616316 7_4:+18274573 None:intergenic
GATCAGAGATGTCTGAGGAG+GGG 0.621652 7_4:-18274424 Msa1143080:CDS
GAAACAAGCAGGGTGATGAA+AGG 0.627020 7_4:-18274599 Msa1143080:CDS
CTCGAATCAGAACGAAAACG+TGG 0.629850 7_4:-18273130 Msa1143080:CDS
TGCAGCATGTATAAAAGTAG+GGG 0.629866 7_4:-18272332 Msa1143080:three_prime_UTR
AGTCATGAAGGTAATCCCAA+AGG 0.634878 7_4:-18273250 Msa1143080:CDS
TATATACTAACATACGCCAC+AGG 0.646847 7_4:-18276113 Msa1143080:five_prime_UTR
TGAATAAGCAGGTAATATCA+GGG 0.650140 7_4:+18272481 None:intergenic
GCATCAACGAATATTAGTGG+TGG 0.650656 7_4:+18276077 None:intergenic
TGGTTTACGAGTTCTTGTTG+TGG 0.652536 7_4:-18275887 Msa1143080:CDS
CGTGGATGGAGAAACAAGCA+GGG 0.655838 7_4:-18274609 Msa1143080:CDS
TGTTCAGTGATGTCCGTGGA+TGG 0.656358 7_4:-18274623 Msa1143080:intron
TAGGACTAGACCAAACACAA+AGG 0.665199 7_4:-18276138 Msa1143080:five_prime_UTR
AAATGGATCAGAGATGTCTG+AGG 0.666125 7_4:-18274429 Msa1143080:CDS
GTGATGAAAGGTGTCCAACA+CGG 0.667153 7_4:-18274587 Msa1143080:CDS
TGGATAAGTAATGGTTCCTG+TGG 0.678696 7_4:+18276097 None:intergenic
ATGTCTTGCTAAGCAACATG+TGG 0.682204 7_4:+18274884 None:intergenic
CCAGCAGGAAAATCGCGTCG+AGG 0.689105 7_4:+18275907 None:intergenic
GCTTCCGGGTTGGAAAGGAA+AGG 0.689286 7_4:+18272814 None:intergenic
GCAGCATGTATAAAAGTAGG+GGG 0.692190 7_4:-18272331 Msa1143080:three_prime_UTR
ATGCTGTTCAGTGATGTCCG+TGG 0.714764 7_4:-18274627 Msa1143080:intron
TTGTGGATGATGATCCAACA+TGG 0.719364 7_4:-18275870 Msa1143080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTAAATTTATTGTTTTT+TGG - chr7_4:18273106-18273125 Msa1143080:CDS 10.0%
!!! TGTTATTTGTTTCATAATTT+TGG - chr7_4:18272698-18272717 Msa1143080:CDS 15.0%
!!! TTATATGCTTATTTGAATTT+TGG + chr7_4:18272798-18272817 None:intergenic 15.0%
!! AATTATAAACTATTTCCATA+TGG - chr7_4:18274387-18274406 Msa1143080:CDS 15.0%
!! TATTGAACAATTATAAAGAT+TGG - chr7_4:18275966-18275985 Msa1143080:five_prime_UTR 15.0%
!! ATTGAACAATTATAAAGATT+GGG - chr7_4:18275967-18275986 Msa1143080:five_prime_UTR 15.0%
!!! ACAAAAAATTTTGAAAGGTA+AGG + chr7_4:18272906-18272925 None:intergenic 20.0%
!!! ATGCTACAAAAAATTTTGAA+AGG + chr7_4:18272911-18272930 None:intergenic 20.0%
!! GAAAAACTTGAATTATTAGA+TGG - chr7_4:18272971-18272990 Msa1143080:CDS 20.0%
!!! TGCTATTTTTAAGACATAAA+AGG - chr7_4:18273046-18273065 Msa1143080:CDS 20.0%
!!! GCTATTTTTAAGACATAAAA+GGG - chr7_4:18273047-18273066 Msa1143080:CDS 20.0%
!!! TATTTTTCAGTCAAAATTGT+AGG - chr7_4:18273302-18273321 Msa1143080:CDS 20.0%
!! ATGAAAAAAGTAACAGAAAA+AGG + chr7_4:18273336-18273355 None:intergenic 20.0%
!!! CTTTTAATCAAATTGATCAA+AGG + chr7_4:18273681-18273700 None:intergenic 20.0%
!!! ATCAAATCTAGTATTTTCTT+GGG + chr7_4:18274531-18274550 None:intergenic 20.0%
!! TTGAACAATTATAAAGATTG+GGG - chr7_4:18275968-18275987 Msa1143080:five_prime_UTR 20.0%
!!! TTTTCCTATAATCAAGAATT+TGG - chr7_4:18275997-18276016 Msa1143080:five_prime_UTR 20.0%
!! AAAAATATGAATTGTAACTG+CGG - chr7_4:18276123-18276142 Msa1143080:five_prime_UTR 20.0%
!! TTACTCATTGCCTTATTATA+AGG - chr7_4:18272344-18272363 Msa1143080:three_prime_UTR 25.0%
! TTCTTTGTTGCCTTATAATA+AGG + chr7_4:18272357-18272376 None:intergenic 25.0%
!! GTTTCAGTTCAAAAAAGTTT+TGG + chr7_4:18272382-18272401 None:intergenic 25.0%
! TAATTAGCACATAACAAAAG+AGG + chr7_4:18272580-18272599 None:intergenic 25.0%
! GTTTCTGAATTTAAATGTGT+TGG - chr7_4:18272726-18272745 Msa1143080:CDS 25.0%
! TTGGATTATAAAATGTCTCT+TGG - chr7_4:18272745-18272764 Msa1143080:CDS 25.0%
!! AAGTTTTTCTTCTTGAAGAT+CGG + chr7_4:18272960-18272979 None:intergenic 25.0%
!!! GAGGGTTATAAACAATTTTT+TGG - chr7_4:18272999-18273018 Msa1143080:CDS 25.0%
!! AGATTAGCTAGAATCAAATT+CGG + chr7_4:18273091-18273110 None:intergenic 25.0%
!!! TTGTTTTTTGGCATTGTTTA+TGG - chr7_4:18273118-18273137 Msa1143080:CDS 25.0%
! AAAAGTAACAGAAAAAGGAT+TGG + chr7_4:18273331-18273350 None:intergenic 25.0%
!! GTCACAGAATTAACAAATTT+TGG - chr7_4:18273392-18273411 Msa1143080:CDS 25.0%
! TGATAGTAAGTTTCTTGTTA+AGG - chr7_4:18274122-18274141 Msa1143080:intron 25.0%
!! AGGTTCTCTAAATTGTTATT+CGG - chr7_4:18274142-18274161 Msa1143080:intron 25.0%
!!! AGCTATTTCTTTAATCAAAG+AGG - chr7_4:18274292-18274311 Msa1143080:CDS 25.0%
!!! GCTATTTCTTTAATCAAAGA+GGG - chr7_4:18274293-18274312 Msa1143080:CDS 25.0%
! CTTAATTCAATAAACTCTTC+GGG + chr7_4:18274348-18274367 None:intergenic 25.0%
! GCTTAATTCAATAAACTCTT+CGG + chr7_4:18274349-18274368 None:intergenic 25.0%
! ATTAAGCTGAAAACAACTAA+AGG - chr7_4:18274362-18274381 Msa1143080:CDS 25.0%
!! CATCAAATCTAGTATTTTCT+TGG + chr7_4:18274532-18274551 None:intergenic 25.0%
!! ACTTCTTGAATATTTTCCTT+AGG - chr7_4:18274613-18274632 Msa1143080:CDS 25.0%
! CAAAAACAAGAGAAGTTAAA+AGG - chr7_4:18274803-18274822 Msa1143080:CDS 25.0%
!!! CACAACAAATTTTTTATCGT+TGG + chr7_4:18274879-18274898 None:intergenic 25.0%
!! AAATTTCCTACATCTTTTGA+AGG + chr7_4:18274986-18275005 None:intergenic 25.0%
! TCAAAAGATGTAGGAAATTT+CGG - chr7_4:18274986-18275005 Msa1143080:intron 25.0%
! ATAGAAACTAAAAGTCATGA+AGG - chr7_4:18275094-18275113 Msa1143080:intron 25.0%
! TTCTTGTAATCATAAAACCT+AGG + chr7_4:18275478-18275497 None:intergenic 25.0%
! TATTGGCATAATATGAACTT+TGG - chr7_4:18275730-18275749 Msa1143080:intron 25.0%
! AATCTGTTGAATCATATAAG+TGG + chr7_4:18275816-18275835 None:intergenic 25.0%
! GATTATTCAGTAATTGATCA+AGG - chr7_4:18275832-18275851 Msa1143080:CDS 25.0%
!!! ATTTTTTTTGCTGAATAAGC+AGG + chr7_4:18275889-18275908 None:intergenic 25.0%
! TGTTCAATAATAGATGTAGT+TGG + chr7_4:18275955-18275974 None:intergenic 25.0%
! TGAACAATTATAAAGATTGG+GGG - chr7_4:18275969-18275988 Msa1143080:five_prime_UTR 25.0%
! AGATCCAAATTCTTGATTAT+AGG + chr7_4:18276004-18276023 None:intergenic 25.0%
! CTGGAACAAAATAAATAAGA+AGG + chr7_4:18276088-18276107 None:intergenic 25.0%
!!! CTTCTTATTTATTTTGTTCC+AGG - chr7_4:18276086-18276105 Msa1143080:five_prime_UTR 25.0%
! AAAATATGAATTGTAACTGC+GGG - chr7_4:18276124-18276143 Msa1143080:five_prime_UTR 25.0%
AGTATATATCCCTTTGTGTT+TGG + chr7_4:18272231-18272250 None:intergenic 30.0%
!! TATTAGTGGTGGATAAGTAA+TGG + chr7_4:18272271-18272290 None:intergenic 30.0%
! CTCAAGAAGTGTAATTATGA+AGG - chr7_4:18272530-18272549 Msa1143080:CDS 30.0%
GTTGATGTACTATACTACTA+AGG - chr7_4:18272618-18272637 Msa1143080:CDS 30.0%
CTACTAAGGATCTTCAAAAT+TGG - chr7_4:18272632-18272651 Msa1143080:CDS 30.0%
TGTCTTAAAAATAGCAGACA+TGG + chr7_4:18273042-18273061 None:intergenic 30.0%
TAAGACATAAAAGGGAACAA+AGG - chr7_4:18273055-18273074 Msa1143080:CDS 30.0%
TGAAAGAGTTGCGAAATATA+TGG - chr7_4:18273824-18273843 Msa1143080:CDS 30.0%
!! TCATATCTTCTAAAGCAAAC+AGG + chr7_4:18273960-18273979 None:intergenic 30.0%
! ATCTTTTCTTTTCTTCGTTG+AGG + chr7_4:18273983-18274002 None:intergenic 30.0%
TTATGCTTGACAATCACAAT+TGG + chr7_4:18274417-18274436 None:intergenic 30.0%
TGTAACAAGTGAATTCTGTT+TGG - chr7_4:18274494-18274513 Msa1143080:CDS 30.0%
TAGATTTGATGAATGTTCCA+TGG - chr7_4:18274541-18274560 Msa1143080:CDS 30.0%
!! GTTTCTTTCTAGAATTCCTA+AGG + chr7_4:18274632-18274651 None:intergenic 30.0%
!! AATTTGTTGTGCAGAAATAC+CGG - chr7_4:18274888-18274907 Msa1143080:CDS 30.0%
GATTTACCTTCAAAAGATGT+AGG - chr7_4:18274977-18274996 Msa1143080:intron 30.0%
GACAAATACAACTATTCTGA+AGG - chr7_4:18275052-18275071 Msa1143080:intron 30.0%
!!! TCTTTTTTGAGCTGTGTTTT+TGG + chr7_4:18275298-18275317 None:intergenic 30.0%
CTTGTATAGAAACAAAACCT+AGG - chr7_4:18275458-18275477 Msa1143080:intron 30.0%
!! TAGGTTGATCATTCATCATA+AGG + chr7_4:18275567-18275586 None:intergenic 30.0%
CCTATTTCCACTACTAATTT+CGG - chr7_4:18275592-18275611 Msa1143080:intron 30.0%
! TTTTAAGCCGAAATTAGTAG+TGG + chr7_4:18275602-18275621 None:intergenic 30.0%
! TTACCAAAGAAACCTACTTT+TGG - chr7_4:18275663-18275682 Msa1143080:intron 30.0%
!! TACCAAAGAAACCTACTTTT+GGG - chr7_4:18275664-18275683 Msa1143080:intron 30.0%
! ACGAGGACTTATATTTCTAT+TGG - chr7_4:18275713-18275732 Msa1143080:intron 30.0%
AACTTTGGTCAACAGAATAT+AGG - chr7_4:18275745-18275764 Msa1143080:intron 30.0%
ACTTTGGTCAACAGAATATA+GGG - chr7_4:18275746-18275765 Msa1143080:intron 30.0%
GTTGAATCATATAAGTGGTT+TGG + chr7_4:18275811-18275830 None:intergenic 30.0%
TGAATAAGCAGGTAATATCA+GGG + chr7_4:18275878-18275897 None:intergenic 30.0%
TTGCAGCATGTATAAAAGTA+GGG - chr7_4:18276023-18276042 Msa1143080:five_prime_UTR 30.0%
!!! TTTTTTTTTCAAGCAAGTCC+TGG + chr7_4:18276107-18276126 None:intergenic 30.0%
TATATACTAACATACGCCAC+AGG - chr7_4:18272243-18272262 Msa1143080:three_prime_UTR 35.0%
TGTGCATCAACGAATATTAG+TGG + chr7_4:18272285-18272304 None:intergenic 35.0%
GGTCTCTCAAAAATGGATAA+TGG - chr7_4:18272413-18272432 Msa1143080:three_prime_UTR 35.0%
! ACTTCTTGAGCATCTTTTCA+AGG + chr7_4:18272520-18272539 None:intergenic 35.0%
TTTCTTCTTGAAGATCGGAA+AGG + chr7_4:18272955-18272974 None:intergenic 35.0%
CTTGAATTATTAGATGGTGC+AGG - chr7_4:18272977-18272996 Msa1143080:CDS 35.0%
AATTATTAGATGGTGCAGGA+GGG - chr7_4:18272981-18273000 Msa1143080:CDS 35.0%
GGCATTGTTTATGGTATCTT+TGG - chr7_4:18273127-18273146 Msa1143080:CDS 35.0%
! CTTTGGAAATAACATGCCAA+TGG - chr7_4:18273144-18273163 Msa1143080:CDS 35.0%
ATGTTAGTGCATGTTACCAA+TGG + chr7_4:18273177-18273196 None:intergenic 35.0%
TTCAAACTTCTTGAGCATGT+TGG - chr7_4:18273573-18273592 Msa1143080:intron 35.0%
ATAGAGAACTGACTAATGAC+AGG + chr7_4:18273615-18273634 None:intergenic 35.0%
ACTATCTCCTTAAGCCTATA+AGG - chr7_4:18273800-18273819 Msa1143080:CDS 35.0%
CTTTCATCCTTATAGGCTTA+AGG + chr7_4:18273810-18273829 None:intergenic 35.0%
GTTAAAGCAGTGAATCAGAT+TGG - chr7_4:18274096-18274115 Msa1143080:intron 35.0%
ATAGTAACATCACCTGTAAG+TGG + chr7_4:18274590-18274609 None:intergenic 35.0%
GAACAAAAATCTTCCTCAAG+TGG - chr7_4:18274941-18274960 Msa1143080:intron 35.0%
GAATGTGCAACAATTCCTTT+GGG + chr7_4:18275124-18275143 None:intergenic 35.0%
! GAAAAAGAAAGAGCTTTGAC+TGG - chr7_4:18275154-18275173 Msa1143080:intron 35.0%
ACATGTCAACACCATATTCT+TGG - chr7_4:18275263-18275282 Msa1143080:intron 35.0%
GGAATTTCAGTCCAAGAATA+TGG + chr7_4:18275277-18275296 None:intergenic 35.0%
AAAGTCACTTGTTCATCTAG+AGG - chr7_4:18275321-18275340 Msa1143080:intron 35.0%
TTCAACCTATTGCCCTTAAA+TGG - chr7_4:18275349-18275368 Msa1143080:intron 35.0%
! TTATGCTGCTTGCCATTTAA+GGG + chr7_4:18275364-18275383 None:intergenic 35.0%
ACATCTTGCTCTGTTATAGA+GGG + chr7_4:18275433-18275452 None:intergenic 35.0%
CAAGAAAGACTACACTAGTT+CGG - chr7_4:18275492-18275511 Msa1143080:intron 35.0%
ATCATTCATCATAAGGCTTC+CGG + chr7_4:18275560-18275579 None:intergenic 35.0%
! CCGAAATTAGTAGTGGAAAT+AGG + chr7_4:18275595-18275614 None:intergenic 35.0%
AAATATAAGTCCTCGTCCAA+AGG + chr7_4:18275709-18275728 None:intergenic 35.0%
ATGTCTGAGTATTATGATCC+AGG - chr7_4:18275769-18275788 Msa1143080:intron 35.0%
CTGAATAAGCAGGTAATATC+AGG + chr7_4:18275879-18275898 None:intergenic 35.0%
CTTGCAGCATGTATAAAAGT+AGG - chr7_4:18276022-18276041 Msa1143080:five_prime_UTR 35.0%
TGCAGCATGTATAAAAGTAG+GGG - chr7_4:18276024-18276043 Msa1143080:five_prime_UTR 35.0%
TAGGACTAGACCAAACACAA+AGG - chr7_4:18272218-18272237 Msa1143080:three_prime_UTR 40.0%
AGGACTAGACCAAACACAAA+GGG - chr7_4:18272219-18272238 Msa1143080:three_prime_UTR 40.0%
TGGATAAGTAATGGTTCCTG+TGG + chr7_4:18272262-18272281 None:intergenic 40.0%
GCATCAACGAATATTAGTGG+TGG + chr7_4:18272282-18272301 None:intergenic 40.0%
TGGTTTACGAGTTCTTGTTG+TGG - chr7_4:18272469-18272488 Msa1143080:three_prime_UTR 40.0%
TTGTGGATGATGATCCAACA+TGG - chr7_4:18272486-18272505 Msa1143080:three_prime_UTR 40.0%
TCAAGGATCTTAAGCCATGT+TGG + chr7_4:18272503-18272522 None:intergenic 40.0%
GAATTATTAGATGGTGCAGG+AGG - chr7_4:18272980-18272999 Msa1143080:CDS 40.0%
TGGAAATAACATGCCAATGG+TGG - chr7_4:18273147-18273166 Msa1143080:CDS 40.0%
!! TACCAATGGATTACCACCAT+TGG + chr7_4:18273163-18273182 None:intergenic 40.0%
ATGTCTTGCTAAGCAACATG+TGG + chr7_4:18273475-18273494 None:intergenic 40.0%
TTGCTTCGTGAAAGGAAAGA+CGG - chr7_4:18273504-18273523 Msa1143080:intron 40.0%
! AAGTTTGAAACCGTCCATGT+CGG + chr7_4:18273562-18273581 None:intergenic 40.0%
CGCAACTCTTTCATCCTTAT+AGG + chr7_4:18273817-18273836 None:intergenic 40.0%
GGCAACATGTCTTCAGAAAA+AGG - chr7_4:18273845-18273864 Msa1143080:intron 40.0%
CTTCAGAAAAAGGATACACG+AGG - chr7_4:18273855-18273874 Msa1143080:intron 40.0%
AGCATGCACTTGATGAGAAA+TGG - chr7_4:18273910-18273929 Msa1143080:intron 40.0%
AAATGGATCAGAGATGTCTG+AGG - chr7_4:18273927-18273946 Msa1143080:intron 40.0%
ACACGACGACAAAGAATTTC+TGG - chr7_4:18274014-18274033 Msa1143080:intron 40.0%
AACTACTCGAGCTTTCTTTG+AGG + chr7_4:18274049-18274068 None:intergenic 40.0%
CAAAGAAAGCTCGAGTAGTT+TGG - chr7_4:18274049-18274068 Msa1143080:intron 40.0%
CTTTAATCAAAGAGGGAGTG+TGG - chr7_4:18274300-18274319 Msa1143080:CDS 40.0%
ATCACAATTGGAAGGCCATA+TGG + chr7_4:18274405-18274424 None:intergenic 40.0%
GCTTGACAATCACAATTGGA+AGG + chr7_4:18274413-18274432 None:intergenic 40.0%
GAATTCTGTTTGGCAGAAGT+TGG - chr7_4:18274504-18274523 Msa1143080:CDS 40.0%
GAAGTCTACTCAAGTAAAGC+CGG + chr7_4:18274910-18274929 None:intergenic 40.0%
AGAATGCTTCATTCCACTTG+AGG + chr7_4:18274957-18274976 None:intergenic 40.0%
! TGTTGCTTGTTTGCTGAGTT+CGG + chr7_4:18275016-18275035 None:intergenic 40.0%
AGTCATGAAGGTAATCCCAA+AGG - chr7_4:18275106-18275125 Msa1143080:intron 40.0%
GGAATGTGCAACAATTCCTT+TGG + chr7_4:18275125-18275144 None:intergenic 40.0%
! TCTTTCTTTTTCTGCAGCAG+TGG + chr7_4:18275146-18275165 None:intergenic 40.0%
!! TCTGATTCGAGTGGGTTAAA+AGG + chr7_4:18275217-18275236 None:intergenic 40.0%
!! GTTTTCGTTCTGATTCGAGT+GGG + chr7_4:18275225-18275244 None:intergenic 40.0%
! GTTATGCTGCTTGCCATTTA+AGG + chr7_4:18275365-18275384 None:intergenic 40.0%
GACATCTTGCTCTGTTATAG+AGG + chr7_4:18275434-18275453 None:intergenic 40.0%
TCATTCATCATAAGGCTTCC+GGG + chr7_4:18275559-18275578 None:intergenic 40.0%
! GTAGTGGAAATAGGTTGTGT+AGG + chr7_4:18275586-18275605 None:intergenic 40.0%
CTCCCAAAAGTAGGTTTCTT+TGG + chr7_4:18275669-18275688 None:intergenic 40.0%
!! CAAAGAAACCTACTTTTGGG+AGG - chr7_4:18275667-18275686 Msa1143080:intron 40.0%
GCAGCATGTATAAAAGTAGG+GGG - chr7_4:18276025-18276044 Msa1143080:five_prime_UTR 40.0%
GAACTGAAACAGAAGCAGCT+TGG - chr7_4:18272392-18272411 Msa1143080:three_prime_UTR 45.0%
GCAGCTTGGTCTCTCAAAAA+TGG - chr7_4:18272406-18272425 Msa1143080:three_prime_UTR 45.0%
ACAAGAACTCGTAAACCAGC+AGG + chr7_4:18272467-18272486 None:intergenic 45.0%
GCTAGAATCAAATTCGGCGA+GGG + chr7_4:18273085-18273104 None:intergenic 45.0%
AGCTAGAATCAAATTCGGCG+AGG + chr7_4:18273086-18273105 None:intergenic 45.0%
TGCCAATGGTGGTAATCCAT+TGG - chr7_4:18273158-18273177 Msa1143080:CDS 45.0%
TATAGTTGAGACCCTAGCAG+TGG - chr7_4:18273208-18273227 Msa1143080:CDS 45.0%
AGTCTTAGATGCCACTGCTA+GGG + chr7_4:18273222-18273241 None:intergenic 45.0%
! CTCTAAGCTTGCTTCGTGAA+AGG - chr7_4:18273496-18273515 Msa1143080:intron 45.0%
! AGTTTGAAACCGTCCATGTC+GGG + chr7_4:18273561-18273580 None:intergenic 45.0%
TGAGCATGTTGGACTTGAGA+TGG - chr7_4:18273584-18273603 Msa1143080:intron 45.0%
GAAACAAGCAGGGTGATGAA+AGG - chr7_4:18273757-18273776 Msa1143080:intron 45.0%
!! GTGATGAAAGGTGTCCAACA+CGG - chr7_4:18273769-18273788 Msa1143080:intron 45.0%
CACTCGTTTAGCAATGTGCT+AGG + chr7_4:18274210-18274229 None:intergenic 45.0%
ACATTCTCTCTACTCAGCCA+TGG + chr7_4:18274561-18274580 None:intergenic 45.0%
GAATGTTGCTAGCCACTTAC+AGG - chr7_4:18274575-18274594 Msa1143080:CDS 45.0%
!! CGTTTTCGTTCTGATTCGAG+TGG + chr7_4:18275226-18275245 None:intergenic 45.0%
CTCGAATCAGAACGAAAACG+TGG - chr7_4:18275226-18275245 Msa1143080:intron 45.0%
! GCTTGCCATTTAAGGGCAAT+AGG + chr7_4:18275357-18275376 None:intergenic 45.0%
TTGCTCTGTTATAGAGGGAG+CGG + chr7_4:18275428-18275447 None:intergenic 45.0%
GGAACTTCTATGAGAAGTCC+TGG + chr7_4:18275790-18275809 None:intergenic 45.0%
GAGTCTTAGATGCCACTGCT+AGG + chr7_4:18273223-18273242 None:intergenic 50.0%
! AGCAGTGGCATCTAAGACTC+AGG - chr7_4:18273223-18273242 Msa1143080:CDS 50.0%
! GCAGTGGCATCTAAGACTCA+GGG - chr7_4:18273224-18273243 Msa1143080:CDS 50.0%
CGATGTAAACATGCCCGACA+TGG - chr7_4:18273545-18273564 Msa1143080:intron 50.0%
GTAAACATGCCCGACATGGA+CGG - chr7_4:18273549-18273568 Msa1143080:intron 50.0%
ATGCTGTTCAGTGATGTCCG+TGG - chr7_4:18273729-18273748 Msa1143080:intron 50.0%
TGTTCAGTGATGTCCGTGGA+TGG - chr7_4:18273733-18273752 Msa1143080:intron 50.0%
! CCTGCTTGTTTCTCCATCCA+CGG + chr7_4:18273749-18273768 None:intergenic 50.0%
CGTGGATGGAGAAACAAGCA+GGG - chr7_4:18273747-18273766 Msa1143080:intron 50.0%
GATAGTCACATGCACCGTGT+TGG + chr7_4:18273786-18273805 None:intergenic 50.0%
TGGATCAGAGATGTCTGAGG+AGG - chr7_4:18273930-18273949 Msa1143080:intron 50.0%
GGATCAGAGATGTCTGAGGA+GGG - chr7_4:18273931-18273950 Msa1143080:intron 50.0%
GATCAGAGATGTCTGAGGAG+GGG - chr7_4:18273932-18273951 Msa1143080:intron 50.0%
GACACCTTTCCTTTCCAACC+CGG - chr7_4:18275538-18275557 Msa1143080:intron 50.0%
! ATAAGGCTTCCGGGTTGGAA+AGG + chr7_4:18275550-18275569 None:intergenic 50.0%
TCATCATAAGGCTTCCGGGT+TGG + chr7_4:18275555-18275574 None:intergenic 50.0%
CTGCTTCACCTCCCAAAAGT+AGG + chr7_4:18275678-18275697 None:intergenic 50.0%
CCGTGGATGGAGAAACAAGC+AGG - chr7_4:18273746-18273765 Msa1143080:intron 55.0%
! GCTTCCGGGTTGGAAAGGAA+AGG + chr7_4:18275545-18275564 None:intergenic 55.0%
TGAAGCAGCTTCTGCGCCTT+TGG - chr7_4:18275690-18275709 Msa1143080:intron 55.0%
CCAGCAGGAAAATCGCGTCG+AGG + chr7_4:18272452-18272471 None:intergenic 60.0%
! CCTCGACGCGATTTTCCTGC+TGG - chr7_4:18272449-18272468 Msa1143080:three_prime_UTR 60.0%
AGCTTCTGCGCCTTTGGACG+AGG - chr7_4:18275696-18275715 Msa1143080:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 18272217 18276161 18272217 ID=Msa1143080;Name=Msa1143080
chr7_4 mRNA 18272217 18276161 18272217 ID=Msa1143080-mRNA-1;Parent=Msa1143080;Name=Msa1143080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=208|1|1|1|1|1|5|291|570
chr7_4 exon 18272217 18273476 18272217 ID=Msa1143080-mRNA-1:exon:4062;Parent=Msa1143080-mRNA-1
chr7_4 exon 18273782 18273858 18273782 ID=Msa1143080-mRNA-1:exon:4061;Parent=Msa1143080-mRNA-1
chr7_4 exon 18274252 18274638 18274252 ID=Msa1143080-mRNA-1:exon:4060;Parent=Msa1143080-mRNA-1
chr7_4 exon 18274757 18274909 18274757 ID=Msa1143080-mRNA-1:exon:4059;Parent=Msa1143080-mRNA-1
chr7_4 exon 18275827 18276161 18275827 ID=Msa1143080-mRNA-1:exon:4058;Parent=Msa1143080-mRNA-1
chr7_4 five_prime_UTR 18275954 18276161 18275954 ID=Msa1143080-mRNA-1:five_prime_utr;Parent=Msa1143080-mRNA-1
chr7_4 CDS 18275827 18275953 18275827 ID=Msa1143080-mRNA-1:cds;Parent=Msa1143080-mRNA-1
chr7_4 CDS 18274757 18274909 18274757 ID=Msa1143080-mRNA-1:cds;Parent=Msa1143080-mRNA-1
chr7_4 CDS 18274252 18274638 18274252 ID=Msa1143080-mRNA-1:cds;Parent=Msa1143080-mRNA-1
chr7_4 CDS 18273782 18273858 18273782 ID=Msa1143080-mRNA-1:cds;Parent=Msa1143080-mRNA-1
chr7_4 CDS 18272508 18273476 18272508 ID=Msa1143080-mRNA-1:cds;Parent=Msa1143080-mRNA-1
chr7_4 three_prime_UTR 18272217 18272507 18272217 ID=Msa1143080-mRNA-1:three_prime_utr;Parent=Msa1143080-mRNA-1
Gene Sequence

>Msa1143080

ATGGATAATGGTTGCTTCTCTTCGCCTCGACGCGATTTTCCTGCTGGTTTACGAGTTCTTGTTGTGGATGATGATCCAACATGGCTTAAGATCCTTGAAAAGATGCTCAAGAAGTGTAATTATGAAGTGACCACATGTTGCTTAGCAAGACATGCTCTAAGCTTGCTTCGTGAAAGGAAAGACGGATACGATATAGTGATCAGCGATGTAAACATGCCCGACATGGACGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCCGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTCCAACACGGTGCATGTGACTATCTCCTTAAGCCTATAAGGATGAAAGAGTTGCGAAATATATGGCAACATGTCTTCAGAAAAAGGATACACGAGGTTAGAGAATTTGAAAATTTTGAGAGTTTTGAGAGCATGCACTTGATGAGAAATGGATCAGAGATGTCTGAGGAGGGGAACCTGTTTGCTTTAGAAGATATGACCTCAACGAAGAAAAGAAAAGATGTAGATAGCAGACACGACGACAAAGAATTTCTGGATTCATCTTCCTCAAAGAAAGCTCGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTACAGAAATACCGGCTTTACTTGAGTAGACTTCAGAAAGATAACGAACAAAAATCTTCCTCAAGTGGAATGAAGCATTCTGATTTACCTTCAAAAGATGTAGGAAATTTCGGTGTTCCGAACTCAGCAAACAAGCAACAAAATGATGCTTCAATCGACAAATACAACTATTCTGAAGGAAGCTTACAACATCAGAACATAGAAACTAAAAGTCATGAAGGTAATCCCAAAGGAATTGTTGCACATTCCACTGCTGCAGAAAAAGAAAGAGCTTTGACTGGTAACATCACTGATGCAACAGACATTGCACTTAATAAACCTTTTAACCCACTCGAATCAGAACGAAAACGTGGAGCGTTTGATTGCAACATGTCAACACCATATTCTTGGACTGAAATTCCAAAAACACAGCTCAAAAAAGAACAAAAGTCACTTGTTCATCTAGAGGATAACTTCAACCTATTGCCCTTAAATGGCAAGCAGCATAACATTCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCCGCTCCCTCTATAACAGAGCAAGATGTCGCTGCTTGTATAGAAACAAAACCTAGGTTTTATGATTACAAGAAAGACTACACTAGTTCGGTGAGTTCAAGAAGAACTTCAGTTGACACCTTTCCTTTCCAACCCGGAAGCCTTATGATGAATGATCAACCTACACAACCTATTTCCACTACTAATTTCGGCTTAAAAACACAGACATCTAATCTTAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTGGGAGGTGAAGCAGCTTCTGCGCCTTTGGACGAGGACTTATATTTCTATTGGCATAATATGAACTTTGGTCAACAGAATATAGGGATGTCTGAGTATTATGATCCAGGACTTCTCATAGAAGTTCCAAACCACTTATATGATTCAACAGATTATTCAGTAATTGATCAAGGTCTATTCATAGCATGA
Protein sequence

>Msa1143080

MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVREFENFESFESMHLMRNGSEMSEEGNLFALEDMTSTKKRKDVDSRHDDKEFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSGMKHSDLPSKDVGNFGVPNSANKQQNDASIDKYNYSEGSLQHQNIETKSHEGNPKGIVAHSTAAEKERALTGNITDATDIALNKPFNPLESERKRGAFDCNMSTPYSWTEIPKTQLKKEQKSLVHLEDNFNLLPLNGKQHNIQVDQSQSIASISSAPSITEQDVAACIETKPRFYDYKKDYTSSVSSRRTSVDTFPFQPGSLMMNDQPTQPISTTNFGLKTQTSNLSCISDLESYQRNLLLGGEAASAPLDEDLYFYWHNMNFGQQNIGMSEYYDPGLLIEVPNHLYDSTDYSVIDQGLFIA*