AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0343260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343260 MtrunA17_Chr3g0123131 97.544 570 14 0 1 570 1 570 0.0 1165
Msa0343260 MtrunA17_Chr8g0376881 61.431 573 163 10 1 561 12 538 0.0 649
Msa0343260 MtrunA17_Chr1g0161431 56.985 272 110 2 12 278 10 279 1.66e-96 306
Msa0343260 MtrunA17_Chr4g0067981 59.770 261 91 2 13 267 31 283 9.84e-93 298
Msa0343260 MtrunA17_Chr2g0294911 56.917 253 105 1 13 265 29 277 2.33e-90 290
Msa0343260 MtrunA17_Chr3g0137101 52.288 306 115 5 13 290 8 310 4.63e-88 285
Msa0343260 MtrunA17_Chr1g0149841 55.777 251 99 3 13 257 5 249 1.24e-80 261
Msa0343260 MtrunA17_Chr7g0275891 43.385 325 150 6 13 310 5 322 7.97e-76 244
Msa0343260 MtrunA17_Chr2g0304841 51.737 259 104 2 13 256 18 270 3.59e-74 249
Msa0343260 MtrunA17_Chr4g0074411 52.590 251 108 3 13 259 18 261 1.08e-73 246
Msa0343260 MtrunA17_Chr4g0074401 51.351 259 108 5 10 259 14 263 1.55e-72 243
Msa0343260 MtrunA17_Chr1g0149851 51.515 264 103 4 13 256 5 263 3.95e-71 238
Msa0343260 MtrunA17_Chr7g0275401 48.120 266 125 3 12 269 4 264 5.38e-69 224
Msa0343260 MtrunA17_Chr3g0134481 45.798 238 67 2 13 250 8 183 9.15e-60 196
Msa0343260 MtrunA17_Chr4g0009851 39.689 257 127 3 6 262 4 232 1.64e-58 197
Msa0343260 MtrunA17_Chr4g0009901 42.366 262 121 4 13 274 10 241 2.00e-58 196
Msa0343260 MtrunA17_Chr4g0074421 51.269 197 79 5 63 253 2 187 7.70e-54 181
Msa0343260 MtrunA17_Chr1g0149831 52.604 192 76 4 72 257 1 183 2.88e-52 178
Msa0343260 MtrunA17_Chr3g0134461 45.148 237 77 2 13 248 8 192 4.63e-51 174
Msa0343260 MtrunA17_Chr6g0471041 36.327 245 126 5 11 254 12 227 2.33e-43 160
Msa0343260 MtrunA17_Chr4g0009981 38.863 211 102 3 58 268 2 185 1.53e-42 153
Msa0343260 MtrunA17_Chr8g0391911 32.549 255 132 6 13 248 9 242 1.17e-33 129
Msa0343260 MtrunA17_Chr8g0383961 44.094 127 71 0 13 139 14 140 8.52e-29 115
Msa0343260 MtrunA17_Chr8g0350761 31.250 256 154 7 15 251 19 271 1.56e-26 113
Msa0343260 MtrunA17_Chr4g0011071 32.927 164 83 3 59 222 35 171 2.38e-26 105
Msa0343260 MtrunA17_Chr6g0456631 35.507 138 81 4 12 142 8 144 4.26e-24 99.4
Msa0343260 MtrunA17_Chr6g0473731 35.484 186 95 5 93 278 10 170 7.16e-24 104
Msa0343260 MtrunA17_Chr3g0127941 41.129 124 68 2 17 136 56 178 1.43e-23 105
Msa0343260 MtrunA17_Chr7g0276361 37.500 128 71 2 14 135 11 135 6.82e-21 96.7
Msa0343260 MtrunA17_Chr3g0091641 34.959 123 77 1 17 136 24 146 5.55e-20 93.6
Msa0343260 MtrunA17_Chr4g0061021 35.772 123 76 1 17 136 33 155 1.15e-19 92.8
Msa0343260 MtrunA17_Chr4g0030271 36.585 123 73 2 17 135 89 210 1.35e-19 93.2
Msa0343260 MtrunA17_Chr8g0345901 34.586 133 78 3 9 137 32 159 6.21e-19 90.5
Msa0343260 MtrunA17_Chr1g0181811 36.066 122 75 1 17 135 85 206 1.89e-18 89.4
Msa0343260 MtrunA17_Chr4g0009991 35.417 144 65 3 105 248 1 116 2.36e-18 81.3
Msa0343260 MtrunA17_Chr5g0423031 43.210 81 45 1 13 93 10 89 3.42e-18 82.8
Msa0343260 MtrunA17_Chr4g0031961 42.424 99 51 1 176 268 102 200 8.44e-17 81.6
Msa0343260 MtrunA17_Chr4g0010001 44.444 81 44 1 13 93 10 89 1.61e-16 75.1
Msa0343260 MtrunA17_Chr4g0054981 36.508 126 76 2 11 135 12 134 3.64e-16 81.6
Msa0343260 MtrunA17_Chr4g0054981 58.929 56 23 0 198 253 309 364 1.53e-13 73.6
Msa0343260 MtrunA17_Chr7g0223971 27.727 220 100 5 95 278 1 197 3.89e-16 81.3
Msa0343260 MtrunA17_Chr7g0255711 57.377 61 26 0 198 258 90 150 8.30e-16 78.6
Msa0343260 MtrunA17_Chr5g0400241 36.220 127 75 3 11 135 12 134 3.73e-14 75.5
Msa0343260 MtrunA17_Chr5g0400241 47.222 72 38 0 193 264 305 376 4.56e-14 75.1
Msa0343260 MtrunA17_Chr4g0059571 29.078 141 85 3 14 139 20 160 3.62e-13 68.9
Msa0343260 MtrunA17_Chr2g0324891 43.662 71 40 0 198 268 160 230 1.59e-12 69.7
Msa0343260 MtrunA17_Chr4g0040481 43.478 69 39 0 198 266 157 225 2.64e-12 68.9
Msa0343260 MtrunA17_Chr7g0256551 28.571 140 79 2 19 137 11 150 5.49e-12 65.9
Msa0343260 MtrunA17_Chr8g0352871 28.472 144 83 3 19 142 11 154 1.61e-11 63.2
Msa0343260 MtrunA17_Chr6g0461641 35.897 117 54 3 195 296 38 148 3.39e-11 65.5
Msa0343260 MtrunA17_Chr6g0469321 70.455 44 13 0 214 257 69 112 4.61e-11 62.0
Msa0343260 MtrunA17_Chr1g0198601 34.167 120 70 3 167 285 183 294 5.08e-11 64.7
Msa0343260 MtrunA17_Chr2g0321461 49.153 59 29 1 195 252 41 99 5.44e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0343260 AT1G67710.1 51.247 441 149 11 14 438 8 398 2.08e-124 376
Msa0343260 AT3G16857.1 58.582 268 83 4 13 257 33 295 1.12e-90 293
Msa0343260 AT3G16857.2 58.582 268 83 4 13 257 33 295 1.71e-90 293
Msa0343260 AT2G01760.1 54.307 267 113 3 13 271 7 272 1.04e-85 271
Msa0343260 AT1G67710.2 45.170 383 144 11 72 438 1 333 5.77e-83 266
Msa0343260 AT2G25180.1 56.641 256 101 3 13 265 13 261 2.51e-82 269
Msa0343260 AT2G01760.2 41.514 383 169 7 13 344 7 385 1.30e-79 256
Msa0343260 AT4G31920.1 49.242 264 106 4 13 270 13 254 9.69e-75 248
Msa0343260 AT3G16857.3 56.769 229 71 4 52 257 2 225 4.80e-70 237
Msa0343260 AT5G58080.1 49.621 264 126 4 1 263 1 258 2.94e-67 230
Msa0343260 AT1G67710.3 41.873 363 145 11 92 438 12 324 2.96e-66 223
Msa0343260 AT2G01760.3 52.404 208 90 3 72 271 1 207 5.42e-59 199
Msa0343260 AT5G49240.1 40.161 249 133 5 6 248 34 272 4.29e-49 172
Msa0343260 AT1G49190.1 31.047 277 166 5 13 275 30 295 9.58e-37 141
Msa0343260 AT5G07210.2 32.727 275 141 5 17 257 16 280 1.96e-35 141
Msa0343260 AT5G07210.1 31.802 283 141 7 17 257 16 288 3.10e-33 134
Msa0343260 AT3G62670.1 35.833 240 135 6 18 251 42 268 8.08e-33 130
Msa0343260 AT2G27070.1 32.472 271 150 8 17 257 16 283 3.57e-32 131
Msa0343260 AT1G49190.2 41.600 125 73 0 13 137 30 154 7.11e-26 112
Msa0343260 AT1G68210.1 22.843 394 254 6 4 353 3 390 2.04e-22 102
Msa0343260 AT2G46790.3 38.211 123 71 2 17 135 37 158 6.43e-22 99.4
Msa0343260 AT2G46790.1 38.211 123 71 2 17 135 37 158 7.17e-22 99.4
Msa0343260 AT5G24470.1 37.600 125 73 2 16 136 49 172 7.51e-22 99.8
Msa0343260 AT5G60100.2 41.085 129 70 3 17 141 64 190 3.63e-21 97.4
Msa0343260 AT5G61380.1 37.398 123 74 1 17 136 19 141 1.14e-20 96.3
Msa0343260 AT5G60100.7 39.837 123 69 2 17 135 64 185 1.84e-20 94.4
Msa0343260 AT5G60100.6 39.837 123 69 2 17 135 64 185 1.84e-20 94.4
Msa0343260 AT5G60100.4 39.837 123 69 2 17 135 64 185 1.84e-20 94.4
Msa0343260 AT5G60100.5 39.837 123 69 2 17 135 64 185 2.99e-20 94.7
Msa0343260 AT5G60100.3 39.837 123 69 2 17 135 64 185 2.99e-20 94.7
Msa0343260 AT5G60100.1 39.837 123 69 2 17 135 64 185 2.99e-20 94.7
Msa0343260 AT5G59570.2 46.392 97 45 2 162 258 111 200 6.85e-18 85.1
Msa0343260 AT5G59570.1 46.392 97 45 2 162 258 111 200 6.85e-18 85.1
Msa0343260 AT5G02810.1 37.398 123 72 2 17 135 78 199 2.05e-17 86.7
Msa0343260 AT3G46640.2 51.899 79 37 1 190 267 135 213 6.66e-17 82.4
Msa0343260 AT3G46640.1 51.899 79 37 1 190 267 135 213 6.66e-17 82.4
Msa0343260 AT3G46640.3 51.899 79 37 1 190 267 135 213 1.07e-16 82.0
Msa0343260 AT2G40970.1 57.377 61 26 0 198 258 104 164 4.63e-16 78.6
Msa0343260 AT3G10760.1 57.377 61 26 0 198 258 104 164 7.17e-16 79.7
Msa0343260 AT5G05090.1 55.738 61 27 0 198 258 80 140 2.24e-15 77.0
Msa0343260 AT5G44190.2 47.368 76 40 0 198 273 146 221 2.52e-14 75.1
Msa0343260 AT5G44190.1 47.368 76 40 0 198 273 146 221 2.73e-14 75.5
Msa0343260 AT2G20570.1 36.667 120 71 2 158 272 107 226 3.12e-13 72.4
Msa0343260 AT4G18020.8 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa0343260 AT4G18020.8 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa0343260 AT4G18020.11 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa0343260 AT4G18020.11 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa0343260 AT4G18020.4 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa0343260 AT4G18020.4 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa0343260 AT4G18020.5 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa0343260 AT4G18020.5 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa0343260 AT4G18020.10 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa0343260 AT4G18020.10 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa0343260 AT4G18020.7 34.074 135 80 3 12 139 13 145 6.96e-13 71.6
Msa0343260 AT4G18020.7 37.383 107 56 2 156 253 246 350 1.91e-12 70.1
Msa0343260 AT4G18020.3 35.115 131 76 3 12 135 13 141 9.79e-13 71.2
Msa0343260 AT4G18020.3 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa0343260 AT4G18020.2 35.115 131 76 3 12 135 13 141 9.79e-13 71.2
Msa0343260 AT4G18020.2 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa0343260 AT4G18020.1 35.115 131 76 3 12 135 13 141 9.79e-13 71.2
Msa0343260 AT4G18020.1 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa0343260 AT4G18020.6 35.115 131 76 3 12 135 13 141 9.79e-13 71.2
Msa0343260 AT4G18020.6 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa0343260 AT4G18020.9 35.115 131 76 3 12 135 13 141 9.79e-13 71.2
Msa0343260 AT4G18020.9 37.383 107 56 2 156 253 246 350 1.67e-12 70.5
Msa0343260 AT3G57040.2 27.778 162 91 4 19 158 11 168 1.57e-12 67.8
Msa0343260 AT3G57040.1 27.778 162 91 4 19 158 11 168 1.57e-12 67.8
Msa0343260 AT2G20570.2 44.444 72 40 0 201 272 171 242 4.21e-12 68.9
Msa0343260 AT1G69580.1 42.857 84 47 1 186 268 21 104 2.06e-11 65.9
Msa0343260 AT1G69580.2 42.857 84 47 1 186 268 21 104 2.19e-11 65.9

Find 121 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTATGCTGCTTGCCATTTA+AGG 0.123652 3_1:+1251648 None:intergenic
TTCTTTGTTGCCTTATAATA+AGG 0.193391 3_1:+1254657 None:intergenic
CGCAACTCTTTCATCCTTAT+AGG 0.193820 3_1:+1253196 None:intergenic
ACACGACGACAAAGAATTTC+TGG 0.206213 3_1:-1252996 Msa0343260:CDS
CTCCCAAAAGTAGGTTTCTT+TGG 0.223208 3_1:+1251344 None:intergenic
TTACTCATTGCCTTATTATA+AGG 0.223385 3_1:-1254667 Msa0343260:five_prime_UTR
TTCAACCTATTGCCCTTAAA+TGG 0.231156 3_1:-1251661 Msa0343260:CDS
ATCATTCATCATAAGGCTTC+CGG 0.251176 3_1:+1251453 None:intergenic
CCTATTTCCACTACTAATTT+CGG 0.260366 3_1:-1251418 Msa0343260:CDS
GGCAACATGTCTTCAGAAAA+AGG 0.266185 3_1:-1253165 Msa0343260:CDS
GGAATTTCAGTCCAAGAATA+TGG 0.271706 3_1:+1251736 None:intergenic
CTGAATAAGCAGGTAATATC+AGG 0.277996 3_1:+1251134 None:intergenic
TCAAAAGATGTAGGAAATTT+CGG 0.297315 3_1:-1252024 Msa0343260:CDS
TATTGAACAATTATAAAGAT+TGG 0.304100 3_1:-1251044 Msa0343260:three_prime_UTR
TCTGATTCGAGTGGGTTAAA+AGG 0.305989 3_1:+1251796 None:intergenic
CTTTCATCCTTATAGGCTTA+AGG 0.308983 3_1:+1253203 None:intergenic
AGATCCAAATTCTTGATTAT+AGG 0.309304 3_1:+1251009 None:intergenic
TTACCAAAGAAACCTACTTT+TGG 0.311221 3_1:-1251347 Msa0343260:CDS
GAATGTTGCTAGCCACTTAC+AGG 0.318285 3_1:-1252435 Msa0343260:intron
CCGAAATTAGTAGTGGAAAT+AGG 0.318852 3_1:+1251418 None:intergenic
ACTATCTCCTTAAGCCTATA+AGG 0.322260 3_1:-1253210 Msa0343260:CDS
TGAAGCAGCTTCTGCGCCTT+TGG 0.331281 3_1:-1251320 Msa0343260:CDS
AGTATATATCCCTTTGTGTT+TGG 0.334763 3_1:+1254783 None:intergenic
ACGAGGACTTATATTTCTAT+TGG 0.343534 3_1:-1251297 Msa0343260:CDS
ATTGAACAATTATAAAGATT+GGG 0.346199 3_1:-1251043 Msa0343260:three_prime_UTR
ACATGTCAACACCATATTCT+TGG 0.360381 3_1:-1251747 Msa0343260:CDS
TTATGCTGCTTGCCATTTAA+GGG 0.367070 3_1:+1251649 None:intergenic
GGAATGTGCAACAATTCCTT+TGG 0.372703 3_1:+1251888 None:intergenic
GTTGAATCATATAAGTGGTT+TGG 0.380619 3_1:+1251202 None:intergenic
GCTTGCCATTTAAGGGCAAT+AGG 0.380909 3_1:+1251656 None:intergenic
TCATTCATCATAAGGCTTCC+GGG 0.383196 3_1:+1251454 None:intergenic
CAAAGAAAGCTCGAGTAGTT+TGG 0.384580 3_1:-1252961 Msa0343260:CDS
ATATCCGATCCTTTATACTT+TGG 0.391843 3_1:+1250859 None:intergenic
TGAAAGAGTTGCGAAATATA+TGG 0.396476 3_1:-1253186 Msa0343260:CDS
AACTTTGGTCAACAGAATAT+AGG 0.396927 3_1:-1251265 Msa0343260:CDS
TAGGTTGATCATTCATCATA+AGG 0.400146 3_1:+1251446 None:intergenic
GCGGGTTAACCAAAGTATAA+AGG 0.410704 3_1:-1250868 None:intergenic
TATTGGCATAATATGAACTT+TGG 0.411212 3_1:-1251280 Msa0343260:CDS
ACTTTGGTCAACAGAATATA+GGG 0.416874 3_1:-1251264 Msa0343260:CDS
TGTTGCTTGTTTGCTGAGTT+CGG 0.418693 3_1:+1251997 None:intergenic
GAATGTGCAACAATTCCTTT+GGG 0.430333 3_1:+1251889 None:intergenic
AGCATGCACTTGATGAGAAA+TGG 0.443162 3_1:-1253100 Msa0343260:CDS
GATTTACCTTCAAAAGATGT+AGG 0.444043 3_1:-1252033 Msa0343260:CDS
GACATCTTGCTCTGTTATAG+AGG 0.450734 3_1:+1251579 None:intergenic
GTTAAAGCAGTGAATCAGAT+TGG 0.453872 3_1:-1252914 Msa0343260:CDS
CTCAAGAAGTGTAATTATGA+AGG 0.461617 3_1:-1254481 Msa0343260:intron
AACTACTCGAGCTTTCTTTG+AGG 0.464350 3_1:+1252964 None:intergenic
AGCTTCTGCGCCTTTGGACG+AGG 0.465782 3_1:-1251314 Msa0343260:CDS
TTGAACAATTATAAAGATTG+GGG 0.468210 3_1:-1251042 Msa0343260:three_prime_UTR
CTTGCAGCATGTATAAAAGT+AGG 0.474079 3_1:-1250988 Msa0343260:three_prime_UTR
TCATATCTTCTAAAGCAAAC+AGG 0.481173 3_1:+1253053 None:intergenic
AGTTTGAAACCGTCCATGTC+GGG 0.482203 3_1:+1253452 None:intergenic
AATTTGTTGTGCAGAAATAC+CGG 0.482831 3_1:-1252122 Msa0343260:intron
TCAAGGATCTTAAGCCATGT+TGG 0.493168 3_1:+1254511 None:intergenic
AATCTGTTGAATCATATAAG+TGG 0.495988 3_1:+1251197 None:intergenic
GGAACTTCTATGAGAAGTCC+TGG 0.496302 3_1:+1251223 None:intergenic
CTGCTTCACCTCCCAAAAGT+AGG 0.498434 3_1:+1251335 None:intergenic
TGTTCAATAATAGATGTAGT+TGG 0.504586 3_1:+1251058 None:intergenic
GATTATTCAGTAATTGATCA+AGG 0.504935 3_1:-1251178 Msa0343260:CDS
ATGTCTGAGTATTATGATCC+AGG 0.508275 3_1:-1251241 Msa0343260:CDS
TGTGCATCAACGAATATTAG+TGG 0.517100 3_1:+1254729 None:intergenic
CTGGAACAAAATAAATAAGA+AGG 0.518397 3_1:+1250925 None:intergenic
TTCAAACTTCTTGAGCATGT+TGG 0.518961 3_1:-1253437 Msa0343260:CDS
TTGCAGCATGTATAAAAGTA+GGG 0.519598 3_1:-1250987 Msa0343260:three_prime_UTR
CTCTAAGCTTGCTTCGTGAA+AGG 0.524950 3_1:-1253514 Msa0343260:CDS
AAAATATGAATTGTAACTGC+GGG 0.524959 3_1:-1250886 Msa0343260:three_prime_UTR
CAAGAAAGACTACACTAGTT+CGG 0.525368 3_1:-1251518 Msa0343260:CDS
TGAGCATGTTGGACTTGAGA+TGG 0.531729 3_1:-1253426 Msa0343260:CDS
CCGTGGATGGAGAAACAAGC+AGG 0.533449 3_1:-1253264 Msa0343260:CDS
ATAGTAACATCACCTGTAAG+TGG 0.535698 3_1:+1252423 None:intergenic
AGAATGCTTCATTCCACTTG+AGG 0.537639 3_1:+1252056 None:intergenic
GAACTGAAACAGAAGCAGCT+TGG 0.544464 3_1:-1254619 Msa0343260:five_prime_UTR
CCTGCTTGTTTCTCCATCCA+CGG 0.545386 3_1:+1253264 None:intergenic
TCATCATAAGGCTTCCGGGT+TGG 0.545654 3_1:+1251458 None:intergenic
GAAGTCTACTCAAGTAAAGC+CGG 0.548598 3_1:+1252103 None:intergenic
GACAAATACAACTATTCTGA+AGG 0.548895 3_1:-1251958 Msa0343260:CDS
ATAAGGCTTCCGGGTTGGAA+AGG 0.569730 3_1:+1251463 None:intergenic
GTAAACATGCCCGACATGGA+CGG 0.570099 3_1:-1253461 Msa0343260:CDS
TTGCTCTGTTATAGAGGGAG+CGG 0.570348 3_1:+1251585 None:intergenic
GACACCTTTCCTTTCCAACC+CGG 0.571228 3_1:-1251472 Msa0343260:CDS
GTAGTGGAAATAGGTTGTGT+AGG 0.571324 3_1:+1251427 None:intergenic
AGGACTAGACCAAACACAAA+GGG 0.576648 3_1:-1254792 Msa0343260:five_prime_UTR
ATAGAAACTAAAAGTCATGA+AGG 0.577004 3_1:-1251916 Msa0343260:CDS
CGATGTAAACATGCCCGACA+TGG 0.580139 3_1:-1253465 Msa0343260:CDS
GGATCAGAGATGTCTGAGGA+GGG 0.581360 3_1:-1253079 Msa0343260:CDS
ATAGAGAACTGACTAATGAC+AGG 0.581856 3_1:+1253398 None:intergenic
AAATATAAGTCCTCGTCCAA+AGG 0.586082 3_1:+1251304 None:intergenic
CTTGTATAGAAACAAAACCT+AGG 0.593384 3_1:-1251552 Msa0343260:CDS
ACAAGAACTCGTAAACCAGC+AGG 0.595339 3_1:+1254547 None:intergenic
TTCTTGTAATCATAAAACCT+AGG 0.596152 3_1:+1251535 None:intergenic
TAGATTTGATGAATGTTCCA+TGG 0.598681 3_1:-1252469 Msa0343260:CDS
TATTAGTGGTGGATAAGTAA+TGG 0.602951 3_1:+1254743 None:intergenic
ACATCTTGCTCTGTTATAGA+GGG 0.608912 3_1:+1251580 None:intergenic
ACATTCTCTCTACTCAGCCA+TGG 0.609214 3_1:+1252452 None:intergenic
TTGCTTCGTGAAAGGAAAGA+CGG 0.611540 3_1:-1253506 Msa0343260:CDS
AAGTTTGAAACCGTCCATGT+CGG 0.611862 3_1:+1253451 None:intergenic
TGGATCAGAGATGTCTGAGG+AGG 0.612409 3_1:-1253080 Msa0343260:CDS
TGAACAATTATAAAGATTGG+GGG 0.614567 3_1:-1251041 Msa0343260:three_prime_UTR
AAAGTCACTTGTTCATCTAG+AGG 0.616120 3_1:-1251689 Msa0343260:CDS
GATAGTCACATGCACCGTGT+TGG 0.616316 3_1:+1253227 None:intergenic
GATCAGAGATGTCTGAGGAG+GGG 0.621652 3_1:-1253078 Msa0343260:CDS
GAAACAAGCAGGGTGATGAA+AGG 0.627020 3_1:-1253253 Msa0343260:CDS
CTCGAATCAGAACGAAAACG+TGG 0.629850 3_1:-1251784 Msa0343260:CDS
TGCAGCATGTATAAAAGTAG+GGG 0.629866 3_1:-1250986 Msa0343260:three_prime_UTR
AGTCATGAAGGTAATCCCAA+AGG 0.634878 3_1:-1251904 Msa0343260:CDS
TATATACTAACATACGCCAC+AGG 0.646847 3_1:-1254768 Msa0343260:five_prime_UTR
TGAATAAGCAGGTAATATCA+GGG 0.650140 3_1:+1251135 None:intergenic
GCATCAACGAATATTAGTGG+TGG 0.650656 3_1:+1254732 None:intergenic
TGGTTTACGAGTTCTTGTTG+TGG 0.652536 3_1:-1254542 Msa0343260:CDS
CGTGGATGGAGAAACAAGCA+GGG 0.655838 3_1:-1253263 Msa0343260:CDS
TGTTCAGTGATGTCCGTGGA+TGG 0.656358 3_1:-1253277 Msa0343260:intron
TAGGACTAGACCAAACACAA+AGG 0.665199 3_1:-1254793 Msa0343260:five_prime_UTR
AAATGGATCAGAGATGTCTG+AGG 0.666125 3_1:-1253083 Msa0343260:CDS
GTGATGAAAGGTGTCCAACA+CGG 0.667153 3_1:-1253241 Msa0343260:CDS
TGGATAAGTAATGGTTCCTG+TGG 0.678696 3_1:+1254752 None:intergenic
ATGTCTTGCTAAGCAACATG+TGG 0.682204 3_1:+1253538 None:intergenic
CCAGCAGGAAAATCGCGTCG+AGG 0.689105 3_1:+1254562 None:intergenic
GCTTCCGGGTTGGAAAGGAA+AGG 0.689286 3_1:+1251468 None:intergenic
GCAGCATGTATAAAAGTAGG+GGG 0.692190 3_1:-1250985 Msa0343260:three_prime_UTR
ATGCTGTTCAGTGATGTCCG+TGG 0.714764 3_1:-1253281 Msa0343260:intron
TTGTGGATGATGATCCAACA+TGG 0.719364 3_1:-1254525 Msa0343260:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTAAATTTATTGTTTTT+TGG - chr3_1:1251761-1251780 Msa0343260:CDS 10.0%
!!! TGTTATTTGTTTCATAATTT+TGG - chr3_1:1251352-1251371 Msa0343260:CDS 15.0%
!!! TTATATGCTTATTTGAATTT+TGG + chr3_1:1251452-1251471 None:intergenic 15.0%
!! AATTATAAACTATTTCCATA+TGG - chr3_1:1253042-1253061 Msa0343260:CDS 15.0%
!! TATTGAACAATTATAAAGAT+TGG - chr3_1:1254621-1254640 Msa0343260:five_prime_UTR 15.0%
!! ATTGAACAATTATAAAGATT+GGG - chr3_1:1254622-1254641 Msa0343260:five_prime_UTR 15.0%
!!! CAAAAAAATTTTGAAAGGTA+AGG + chr3_1:1251560-1251579 None:intergenic 20.0%
!!! TGCTACAAAAAAATTTTGAA+AGG + chr3_1:1251565-1251584 None:intergenic 20.0%
!! GAAAAACTTGAATTATTAGA+TGG - chr3_1:1251626-1251645 Msa0343260:CDS 20.0%
!!! TGCTATTTTTAAGACATAAA+AGG - chr3_1:1251701-1251720 Msa0343260:CDS 20.0%
!!! GCTATTTTTAAGACATAAAA+GGG - chr3_1:1251702-1251721 Msa0343260:CDS 20.0%
!!! TATTTTTCAGTCAAAATTGT+AGG - chr3_1:1251957-1251976 Msa0343260:CDS 20.0%
!! ATGAAAAAAGTAACAGAAAA+AGG + chr3_1:1251991-1252010 None:intergenic 20.0%
!!! CTTTTAATCAAATTGATCAA+AGG + chr3_1:1252336-1252355 None:intergenic 20.0%
!!! ATCAAATCTAGTATTTTCTT+GGG + chr3_1:1253186-1253205 None:intergenic 20.0%
!! TTGAACAATTATAAAGATTG+GGG - chr3_1:1254623-1254642 Msa0343260:five_prime_UTR 20.0%
!!! TTTTCCTATAATCAAGAATT+TGG - chr3_1:1254652-1254671 Msa0343260:five_prime_UTR 20.0%
!! AAAAATATGAATTGTAACTG+CGG - chr3_1:1254778-1254797 Msa0343260:five_prime_UTR 20.0%
!! TTACTCATTGCCTTATTATA+AGG - chr3_1:1250998-1251017 Msa0343260:three_prime_UTR 25.0%
! TTCTTTGTTGCCTTATAATA+AGG + chr3_1:1251011-1251030 None:intergenic 25.0%
!! GTTTCAGTTCAAAAAAGTTT+TGG + chr3_1:1251036-1251055 None:intergenic 25.0%
! TAATTAGCACATAACAAAAG+AGG + chr3_1:1251234-1251253 None:intergenic 25.0%
! GTTTCTGAATTTAAATGTGT+TGG - chr3_1:1251380-1251399 Msa0343260:CDS 25.0%
! TTGGATTATAAAATGTCTCT+TGG - chr3_1:1251399-1251418 Msa0343260:CDS 25.0%
!! AAGTTTTTCTTCTTGAAGAT+CGG + chr3_1:1251615-1251634 None:intergenic 25.0%
!!! GAGGGTTATAAACAATTTTT+TGG - chr3_1:1251654-1251673 Msa0343260:CDS 25.0%
!! AGATTAGCTAGAATCAAATT+CGG + chr3_1:1251746-1251765 None:intergenic 25.0%
!!! TTGTTTTTTGGCATTGTTTA+TGG - chr3_1:1251773-1251792 Msa0343260:CDS 25.0%
! AAAAGTAACAGAAAAAGGAT+TGG + chr3_1:1251986-1252005 None:intergenic 25.0%
!! GTCACAGAATTAACAAATTT+TGG - chr3_1:1252047-1252066 Msa0343260:CDS 25.0%
! TGATAGTAAGTTTCTTGTTA+AGG - chr3_1:1252777-1252796 Msa0343260:intron 25.0%
!! AGGTTCTCTAAATTGTTATT+CGG - chr3_1:1252797-1252816 Msa0343260:intron 25.0%
!!! AGCTATTTCTTTAATCAAAG+AGG - chr3_1:1252947-1252966 Msa0343260:CDS 25.0%
!!! GCTATTTCTTTAATCAAAGA+GGG - chr3_1:1252948-1252967 Msa0343260:CDS 25.0%
! CTTAATTCAATAAACTCTTC+GGG + chr3_1:1253003-1253022 None:intergenic 25.0%
! GCTTAATTCAATAAACTCTT+CGG + chr3_1:1253004-1253023 None:intergenic 25.0%
! ATTAAGCTGAAAACAACTAA+AGG - chr3_1:1253017-1253036 Msa0343260:CDS 25.0%
!! CATCAAATCTAGTATTTTCT+TGG + chr3_1:1253187-1253206 None:intergenic 25.0%
!! ACTTCTTGAATATTTTCCTT+AGG - chr3_1:1253268-1253287 Msa0343260:CDS 25.0%
! CAAAAACAAGAGAAGTTAAA+AGG - chr3_1:1253458-1253477 Msa0343260:CDS 25.0%
!!! CACAACAAATTTTTTATCGT+TGG + chr3_1:1253534-1253553 None:intergenic 25.0%
!! AAATTTCCTACATCTTTTGA+AGG + chr3_1:1253641-1253660 None:intergenic 25.0%
! TCAAAAGATGTAGGAAATTT+CGG - chr3_1:1253641-1253660 Msa0343260:intron 25.0%
! ATAGAAACTAAAAGTCATGA+AGG - chr3_1:1253749-1253768 Msa0343260:intron 25.0%
! TTCTTGTAATCATAAAACCT+AGG + chr3_1:1254133-1254152 None:intergenic 25.0%
! TATTGGCATAATATGAACTT+TGG - chr3_1:1254385-1254404 Msa0343260:intron 25.0%
! AATCTGTTGAATCATATAAG+TGG + chr3_1:1254471-1254490 None:intergenic 25.0%
! GATTATTCAGTAATTGATCA+AGG - chr3_1:1254487-1254506 Msa0343260:CDS 25.0%
!!! ATTTTTTTTGCTGAATAAGC+AGG + chr3_1:1254544-1254563 None:intergenic 25.0%
! TGTTCAATAATAGATGTAGT+TGG + chr3_1:1254610-1254629 None:intergenic 25.0%
! TGAACAATTATAAAGATTGG+GGG - chr3_1:1254624-1254643 Msa0343260:five_prime_UTR 25.0%
! AGATCCAAATTCTTGATTAT+AGG + chr3_1:1254659-1254678 None:intergenic 25.0%
! CTGGAACAAAATAAATAAGA+AGG + chr3_1:1254743-1254762 None:intergenic 25.0%
!!! CTTCTTATTTATTTTGTTCC+AGG - chr3_1:1254741-1254760 Msa0343260:five_prime_UTR 25.0%
! AAAATATGAATTGTAACTGC+GGG - chr3_1:1254779-1254798 Msa0343260:five_prime_UTR 25.0%
AGTATATATCCCTTTGTGTT+TGG + chr3_1:1250885-1250904 None:intergenic 30.0%
!! TATTAGTGGTGGATAAGTAA+TGG + chr3_1:1250925-1250944 None:intergenic 30.0%
! CTCAAGAAGTGTAATTATGA+AGG - chr3_1:1251184-1251203 Msa0343260:CDS 30.0%
GTTGATGTACTATACTACTA+AGG - chr3_1:1251272-1251291 Msa0343260:CDS 30.0%
CTACTAAGGATCTTCAAAAT+TGG - chr3_1:1251286-1251305 Msa0343260:CDS 30.0%
TGTCTTAAAAATAGCAGACA+TGG + chr3_1:1251697-1251716 None:intergenic 30.0%
TAAGACATAAAAGGGAACAA+AGG - chr3_1:1251710-1251729 Msa0343260:CDS 30.0%
TGAAAGAGTTGCGAAATATA+TGG - chr3_1:1252479-1252498 Msa0343260:CDS 30.0%
!! TCATATCTTCTAAAGCAAAC+AGG + chr3_1:1252615-1252634 None:intergenic 30.0%
! ATCTTTTCTTTTCTTCGTTG+AGG + chr3_1:1252638-1252657 None:intergenic 30.0%
TTATGCTTGACAATCACAAT+TGG + chr3_1:1253072-1253091 None:intergenic 30.0%
TGTAACAAGTGAATTCTGTT+TGG - chr3_1:1253149-1253168 Msa0343260:CDS 30.0%
TAGATTTGATGAATGTTCCA+TGG - chr3_1:1253196-1253215 Msa0343260:CDS 30.0%
!! GTTTCTTTCTAGAATTCCTA+AGG + chr3_1:1253287-1253306 None:intergenic 30.0%
!! AATTTGTTGTGCAGAAATAC+CGG - chr3_1:1253543-1253562 Msa0343260:CDS 30.0%
GATTTACCTTCAAAAGATGT+AGG - chr3_1:1253632-1253651 Msa0343260:intron 30.0%
GACAAATACAACTATTCTGA+AGG - chr3_1:1253707-1253726 Msa0343260:intron 30.0%
!!! TCTTTTTTGAGCTGTGTTTT+TGG + chr3_1:1253953-1253972 None:intergenic 30.0%
CTTGTATAGAAACAAAACCT+AGG - chr3_1:1254113-1254132 Msa0343260:intron 30.0%
!! TAGGTTGATCATTCATCATA+AGG + chr3_1:1254222-1254241 None:intergenic 30.0%
CCTATTTCCACTACTAATTT+CGG - chr3_1:1254247-1254266 Msa0343260:intron 30.0%
! TTTTAAGCCGAAATTAGTAG+TGG + chr3_1:1254257-1254276 None:intergenic 30.0%
! TTACCAAAGAAACCTACTTT+TGG - chr3_1:1254318-1254337 Msa0343260:intron 30.0%
!! TACCAAAGAAACCTACTTTT+GGG - chr3_1:1254319-1254338 Msa0343260:intron 30.0%
! ACGAGGACTTATATTTCTAT+TGG - chr3_1:1254368-1254387 Msa0343260:intron 30.0%
AACTTTGGTCAACAGAATAT+AGG - chr3_1:1254400-1254419 Msa0343260:intron 30.0%
ACTTTGGTCAACAGAATATA+GGG - chr3_1:1254401-1254420 Msa0343260:intron 30.0%
GTTGAATCATATAAGTGGTT+TGG + chr3_1:1254466-1254485 None:intergenic 30.0%
TGAATAAGCAGGTAATATCA+GGG + chr3_1:1254533-1254552 None:intergenic 30.0%
TTGCAGCATGTATAAAAGTA+GGG - chr3_1:1254678-1254697 Msa0343260:five_prime_UTR 30.0%
!!! TTTTTTTTTCAAGCAAGTCC+TGG + chr3_1:1254762-1254781 None:intergenic 30.0%
TATATACTAACATACGCCAC+AGG - chr3_1:1250897-1250916 Msa0343260:three_prime_UTR 35.0%
TGTGCATCAACGAATATTAG+TGG + chr3_1:1250939-1250958 None:intergenic 35.0%
GGTCTCTCAAAAATGGATAA+TGG - chr3_1:1251067-1251086 Msa0343260:three_prime_UTR 35.0%
! ACTTCTTGAGCATCTTTTCA+AGG + chr3_1:1251174-1251193 None:intergenic 35.0%
TTTCTTCTTGAAGATCGGAA+AGG + chr3_1:1251610-1251629 None:intergenic 35.0%
CTTGAATTATTAGATGGTGC+AGG - chr3_1:1251632-1251651 Msa0343260:CDS 35.0%
AATTATTAGATGGTGCAGGA+GGG - chr3_1:1251636-1251655 Msa0343260:CDS 35.0%
GGCATTGTTTATGGTATCTT+TGG - chr3_1:1251782-1251801 Msa0343260:CDS 35.0%
! CTTTGGAAATAACATGCCAA+TGG - chr3_1:1251799-1251818 Msa0343260:CDS 35.0%
ATGTTAGTGCATGTTACCAA+TGG + chr3_1:1251832-1251851 None:intergenic 35.0%
TTCAAACTTCTTGAGCATGT+TGG - chr3_1:1252228-1252247 Msa0343260:intron 35.0%
ATAGAGAACTGACTAATGAC+AGG + chr3_1:1252270-1252289 None:intergenic 35.0%
ACTATCTCCTTAAGCCTATA+AGG - chr3_1:1252455-1252474 Msa0343260:CDS 35.0%
CTTTCATCCTTATAGGCTTA+AGG + chr3_1:1252465-1252484 None:intergenic 35.0%
GTTAAAGCAGTGAATCAGAT+TGG - chr3_1:1252751-1252770 Msa0343260:intron 35.0%
ATAGTAACATCACCTGTAAG+TGG + chr3_1:1253245-1253264 None:intergenic 35.0%
GAACAAAAATCTTCCTCAAG+TGG - chr3_1:1253596-1253615 Msa0343260:intron 35.0%
GAATGTGCAACAATTCCTTT+GGG + chr3_1:1253779-1253798 None:intergenic 35.0%
! GAAAAAGAAAGAGCTTTGAC+TGG - chr3_1:1253809-1253828 Msa0343260:intron 35.0%
ACATGTCAACACCATATTCT+TGG - chr3_1:1253918-1253937 Msa0343260:intron 35.0%
GGAATTTCAGTCCAAGAATA+TGG + chr3_1:1253932-1253951 None:intergenic 35.0%
AAAGTCACTTGTTCATCTAG+AGG - chr3_1:1253976-1253995 Msa0343260:intron 35.0%
TTCAACCTATTGCCCTTAAA+TGG - chr3_1:1254004-1254023 Msa0343260:intron 35.0%
! TTATGCTGCTTGCCATTTAA+GGG + chr3_1:1254019-1254038 None:intergenic 35.0%
ACATCTTGCTCTGTTATAGA+GGG + chr3_1:1254088-1254107 None:intergenic 35.0%
CAAGAAAGACTACACTAGTT+CGG - chr3_1:1254147-1254166 Msa0343260:intron 35.0%
ATCATTCATCATAAGGCTTC+CGG + chr3_1:1254215-1254234 None:intergenic 35.0%
! CCGAAATTAGTAGTGGAAAT+AGG + chr3_1:1254250-1254269 None:intergenic 35.0%
AAATATAAGTCCTCGTCCAA+AGG + chr3_1:1254364-1254383 None:intergenic 35.0%
ATGTCTGAGTATTATGATCC+AGG - chr3_1:1254424-1254443 Msa0343260:intron 35.0%
CTGAATAAGCAGGTAATATC+AGG + chr3_1:1254534-1254553 None:intergenic 35.0%
CTTGCAGCATGTATAAAAGT+AGG - chr3_1:1254677-1254696 Msa0343260:five_prime_UTR 35.0%
TGCAGCATGTATAAAAGTAG+GGG - chr3_1:1254679-1254698 Msa0343260:five_prime_UTR 35.0%
TAGGACTAGACCAAACACAA+AGG - chr3_1:1250872-1250891 Msa0343260:three_prime_UTR 40.0%
AGGACTAGACCAAACACAAA+GGG - chr3_1:1250873-1250892 Msa0343260:three_prime_UTR 40.0%
TGGATAAGTAATGGTTCCTG+TGG + chr3_1:1250916-1250935 None:intergenic 40.0%
GCATCAACGAATATTAGTGG+TGG + chr3_1:1250936-1250955 None:intergenic 40.0%
TGGTTTACGAGTTCTTGTTG+TGG - chr3_1:1251123-1251142 Msa0343260:three_prime_UTR 40.0%
TTGTGGATGATGATCCAACA+TGG - chr3_1:1251140-1251159 Msa0343260:three_prime_UTR 40.0%
TCAAGGATCTTAAGCCATGT+TGG + chr3_1:1251157-1251176 None:intergenic 40.0%
GAATTATTAGATGGTGCAGG+AGG - chr3_1:1251635-1251654 Msa0343260:CDS 40.0%
TGGAAATAACATGCCAATGG+TGG - chr3_1:1251802-1251821 Msa0343260:CDS 40.0%
!! TACCAATGGATTACCACCAT+TGG + chr3_1:1251818-1251837 None:intergenic 40.0%
ATGTCTTGCTAAGCAACATG+TGG + chr3_1:1252130-1252149 None:intergenic 40.0%
TTGCTTCGTGAAAGGAAAGA+CGG - chr3_1:1252159-1252178 Msa0343260:intron 40.0%
! AAGTTTGAAACCGTCCATGT+CGG + chr3_1:1252217-1252236 None:intergenic 40.0%
CGCAACTCTTTCATCCTTAT+AGG + chr3_1:1252472-1252491 None:intergenic 40.0%
GGCAACATGTCTTCAGAAAA+AGG - chr3_1:1252500-1252519 Msa0343260:intron 40.0%
CTTCAGAAAAAGGATACACG+AGG - chr3_1:1252510-1252529 Msa0343260:intron 40.0%
AGCATGCACTTGATGAGAAA+TGG - chr3_1:1252565-1252584 Msa0343260:intron 40.0%
AAATGGATCAGAGATGTCTG+AGG - chr3_1:1252582-1252601 Msa0343260:intron 40.0%
ACACGACGACAAAGAATTTC+TGG - chr3_1:1252669-1252688 Msa0343260:intron 40.0%
AACTACTCGAGCTTTCTTTG+AGG + chr3_1:1252704-1252723 None:intergenic 40.0%
CAAAGAAAGCTCGAGTAGTT+TGG - chr3_1:1252704-1252723 Msa0343260:intron 40.0%
CTTTAATCAAAGAGGGAGTG+TGG - chr3_1:1252955-1252974 Msa0343260:CDS 40.0%
ATCACAATTGGAAGGCCATA+TGG + chr3_1:1253060-1253079 None:intergenic 40.0%
GCTTGACAATCACAATTGGA+AGG + chr3_1:1253068-1253087 None:intergenic 40.0%
GAATTCTGTTTGGCAGAAGT+TGG - chr3_1:1253159-1253178 Msa0343260:CDS 40.0%
GAAGTCTACTCAAGTAAAGC+CGG + chr3_1:1253565-1253584 None:intergenic 40.0%
AGAATGCTTCATTCCACTTG+AGG + chr3_1:1253612-1253631 None:intergenic 40.0%
! TGTTGCTTGTTTGCTGAGTT+CGG + chr3_1:1253671-1253690 None:intergenic 40.0%
AGTCATGAAGGTAATCCCAA+AGG - chr3_1:1253761-1253780 Msa0343260:intron 40.0%
GGAATGTGCAACAATTCCTT+TGG + chr3_1:1253780-1253799 None:intergenic 40.0%
! TCTTTCTTTTTCTGCAGCAG+TGG + chr3_1:1253801-1253820 None:intergenic 40.0%
!! TCTGATTCGAGTGGGTTAAA+AGG + chr3_1:1253872-1253891 None:intergenic 40.0%
!! GTTTTCGTTCTGATTCGAGT+GGG + chr3_1:1253880-1253899 None:intergenic 40.0%
! GTTATGCTGCTTGCCATTTA+AGG + chr3_1:1254020-1254039 None:intergenic 40.0%
GACATCTTGCTCTGTTATAG+AGG + chr3_1:1254089-1254108 None:intergenic 40.0%
TCATTCATCATAAGGCTTCC+GGG + chr3_1:1254214-1254233 None:intergenic 40.0%
! GTAGTGGAAATAGGTTGTGT+AGG + chr3_1:1254241-1254260 None:intergenic 40.0%
CTCCCAAAAGTAGGTTTCTT+TGG + chr3_1:1254324-1254343 None:intergenic 40.0%
!! CAAAGAAACCTACTTTTGGG+AGG - chr3_1:1254322-1254341 Msa0343260:intron 40.0%
GCAGCATGTATAAAAGTAGG+GGG - chr3_1:1254680-1254699 Msa0343260:five_prime_UTR 40.0%
GAACTGAAACAGAAGCAGCT+TGG - chr3_1:1251046-1251065 Msa0343260:three_prime_UTR 45.0%
GCAGCTTGGTCTCTCAAAAA+TGG - chr3_1:1251060-1251079 Msa0343260:three_prime_UTR 45.0%
ACAAGAACTCGTAAACCAGC+AGG + chr3_1:1251121-1251140 None:intergenic 45.0%
GCTAGAATCAAATTCGGCGA+GGG + chr3_1:1251740-1251759 None:intergenic 45.0%
AGCTAGAATCAAATTCGGCG+AGG + chr3_1:1251741-1251760 None:intergenic 45.0%
TGCCAATGGTGGTAATCCAT+TGG - chr3_1:1251813-1251832 Msa0343260:CDS 45.0%
TATAGTTGAGACCCTAGCAG+TGG - chr3_1:1251863-1251882 Msa0343260:CDS 45.0%
AGTCTTAGATGCCACTGCTA+GGG + chr3_1:1251877-1251896 None:intergenic 45.0%
! CTCTAAGCTTGCTTCGTGAA+AGG - chr3_1:1252151-1252170 Msa0343260:intron 45.0%
! AGTTTGAAACCGTCCATGTC+GGG + chr3_1:1252216-1252235 None:intergenic 45.0%
TGAGCATGTTGGACTTGAGA+TGG - chr3_1:1252239-1252258 Msa0343260:intron 45.0%
GAAACAAGCAGGGTGATGAA+AGG - chr3_1:1252412-1252431 Msa0343260:intron 45.0%
!! GTGATGAAAGGTGTCCAACA+CGG - chr3_1:1252424-1252443 Msa0343260:intron 45.0%
CACTCGTTTAGCAATGTGCT+AGG + chr3_1:1252865-1252884 None:intergenic 45.0%
ACATTCTCTCTACTCAGCCA+TGG + chr3_1:1253216-1253235 None:intergenic 45.0%
GAATGTTGCTAGCCACTTAC+AGG - chr3_1:1253230-1253249 Msa0343260:CDS 45.0%
!! CGTTTTCGTTCTGATTCGAG+TGG + chr3_1:1253881-1253900 None:intergenic 45.0%
CTCGAATCAGAACGAAAACG+TGG - chr3_1:1253881-1253900 Msa0343260:intron 45.0%
! GCTTGCCATTTAAGGGCAAT+AGG + chr3_1:1254012-1254031 None:intergenic 45.0%
TTGCTCTGTTATAGAGGGAG+CGG + chr3_1:1254083-1254102 None:intergenic 45.0%
GGAACTTCTATGAGAAGTCC+TGG + chr3_1:1254445-1254464 None:intergenic 45.0%
GAGTCTTAGATGCCACTGCT+AGG + chr3_1:1251878-1251897 None:intergenic 50.0%
! AGCAGTGGCATCTAAGACTC+AGG - chr3_1:1251878-1251897 Msa0343260:CDS 50.0%
! GCAGTGGCATCTAAGACTCA+GGG - chr3_1:1251879-1251898 Msa0343260:CDS 50.0%
CGATGTAAACATGCCCGACA+TGG - chr3_1:1252200-1252219 Msa0343260:intron 50.0%
GTAAACATGCCCGACATGGA+CGG - chr3_1:1252204-1252223 Msa0343260:intron 50.0%
ATGCTGTTCAGTGATGTCCG+TGG - chr3_1:1252384-1252403 Msa0343260:intron 50.0%
TGTTCAGTGATGTCCGTGGA+TGG - chr3_1:1252388-1252407 Msa0343260:intron 50.0%
! CCTGCTTGTTTCTCCATCCA+CGG + chr3_1:1252404-1252423 None:intergenic 50.0%
CGTGGATGGAGAAACAAGCA+GGG - chr3_1:1252402-1252421 Msa0343260:intron 50.0%
GATAGTCACATGCACCGTGT+TGG + chr3_1:1252441-1252460 None:intergenic 50.0%
TGGATCAGAGATGTCTGAGG+AGG - chr3_1:1252585-1252604 Msa0343260:intron 50.0%
GGATCAGAGATGTCTGAGGA+GGG - chr3_1:1252586-1252605 Msa0343260:intron 50.0%
GATCAGAGATGTCTGAGGAG+GGG - chr3_1:1252587-1252606 Msa0343260:intron 50.0%
GACACCTTTCCTTTCCAACC+CGG - chr3_1:1254193-1254212 Msa0343260:intron 50.0%
! ATAAGGCTTCCGGGTTGGAA+AGG + chr3_1:1254205-1254224 None:intergenic 50.0%
TCATCATAAGGCTTCCGGGT+TGG + chr3_1:1254210-1254229 None:intergenic 50.0%
CTGCTTCACCTCCCAAAAGT+AGG + chr3_1:1254333-1254352 None:intergenic 50.0%
CCGTGGATGGAGAAACAAGC+AGG - chr3_1:1252401-1252420 Msa0343260:intron 55.0%
! GCTTCCGGGTTGGAAAGGAA+AGG + chr3_1:1254200-1254219 None:intergenic 55.0%
TGAAGCAGCTTCTGCGCCTT+TGG - chr3_1:1254345-1254364 Msa0343260:intron 55.0%
CCAGCAGGAAAATCGCGTCG+AGG + chr3_1:1251106-1251125 None:intergenic 60.0%
! CCTCGACGCGATTTTCCTGC+TGG - chr3_1:1251103-1251122 Msa0343260:three_prime_UTR 60.0%
AGCTTCTGCGCCTTTGGACG+AGG - chr3_1:1254351-1254370 Msa0343260:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 1250871 1254816 1250871 ID=Msa0343260;Name=Msa0343260
chr3_1 mRNA 1250871 1254816 1250871 ID=Msa0343260-mRNA-1;Parent=Msa0343260;Name=Msa0343260-mRNA-1;_AED=0.05;_eAED=0.05;_QI=208|1|1|1|1|1|5|291|570
chr3_1 exon 1250871 1252130 1250871 ID=Msa0343260-mRNA-1:exon:453;Parent=Msa0343260-mRNA-1
chr3_1 exon 1252436 1252512 1252436 ID=Msa0343260-mRNA-1:exon:452;Parent=Msa0343260-mRNA-1
chr3_1 exon 1252906 1253292 1252906 ID=Msa0343260-mRNA-1:exon:451;Parent=Msa0343260-mRNA-1
chr3_1 exon 1253411 1253563 1253411 ID=Msa0343260-mRNA-1:exon:450;Parent=Msa0343260-mRNA-1
chr3_1 exon 1254482 1254816 1254482 ID=Msa0343260-mRNA-1:exon:449;Parent=Msa0343260-mRNA-1
chr3_1 five_prime_UTR 1254609 1254816 1254609 ID=Msa0343260-mRNA-1:five_prime_utr;Parent=Msa0343260-mRNA-1
chr3_1 CDS 1254482 1254608 1254482 ID=Msa0343260-mRNA-1:cds;Parent=Msa0343260-mRNA-1
chr3_1 CDS 1253411 1253563 1253411 ID=Msa0343260-mRNA-1:cds;Parent=Msa0343260-mRNA-1
chr3_1 CDS 1252906 1253292 1252906 ID=Msa0343260-mRNA-1:cds;Parent=Msa0343260-mRNA-1
chr3_1 CDS 1252436 1252512 1252436 ID=Msa0343260-mRNA-1:cds;Parent=Msa0343260-mRNA-1
chr3_1 CDS 1251162 1252130 1251162 ID=Msa0343260-mRNA-1:cds;Parent=Msa0343260-mRNA-1
chr3_1 three_prime_UTR 1250871 1251161 1250871 ID=Msa0343260-mRNA-1:three_prime_utr;Parent=Msa0343260-mRNA-1
Gene Sequence

>Msa0343260

ATGGATAATGGTTGCTTCTCTTCGCCTCGACGCGATTTTCCTGCTGGTTTACGAGTTCTTGTTGTGGATGATGATCCAACATGGCTTAAGATCCTTGAAAAGATGCTCAAGAAGTGTAATTATGAAGTGACCACATGTTGCTTAGCAAGACATGCTCTAAGCTTGCTTCGTGAAAGGAAAGACGGATACGATATAGTGATCAGCGATGTAAACATGCCCGACATGGACGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCCGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTCCAACACGGTGCATGTGACTATCTCCTTAAGCCTATAAGGATGAAAGAGTTGCGAAATATATGGCAACATGTCTTCAGAAAAAGGATACACGAGGTTAGAGAATTTGAAAATTTTGAGAGTTTTGAGAGCATGCACTTGATGAGAAATGGATCAGAGATGTCTGAGGAGGGGAACCTGTTTGCTTTAGAAGATATGACCTCAACGAAGAAAAGAAAAGATGTAGATAGCAGACACGACGACAAAGAATTTCTGGATTCATCTTCCTCAAAGAAAGCTCGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCCAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTACAGAAATACCGGCTTTACTTGAGTAGACTTCAGAAAGATAACGAACAAAAATCTTCCTCAAGTGGAATGAAGCATTCTGATTTACCTTCAAAAGATGTAGGAAATTTCGGTGTTCCGAACTCAGCAAACAAGCAACAAAATGATGCTTCAATCGACAAATACAACTATTCTGAAGGAAGCTTACAACATCAGAACATAGAAACTAAAAGTCATGAAGGTAATCCCAAAGGAATTGTTGCACATTCCACTGCTGCAGAAAAAGAAAGAGCTTTGACTGGTAACATCACTGATGCAACAGACATTGCACTTAATAAACCTTTTAACCCACTCGAATCAGAACGAAAACGTGGAGCGTTTGATTGCAACATGTCAACACCATATTCTTGGACTGAAATTCCAAAAACACAGCTCAAAAAAGAACAAAAGTCACTTGTTCATCTAGAGGATAACTTCAACCTATTGCCCTTAAATGGCAAGCAGCATAACATTCAAGTTGATCAATCACAGTCAATTGCTTCAATTAGTTCCGCTCCCTCTATAACAGAGCAAGATGTCGCTGCTTGTATAGAAACAAAACCTAGGTTTTATGATTACAAGAAAGACTACACTAGTTCGGTGAGTTCAAGAAGAACTTCAGTTGACACCTTTCCTTTCCAACCCGGAAGCCTTATGATGAATGATCAACCTACACAACCTATTTCCACTACTAATTTCGGCTTAAAAACACAGACATCTAATCTTAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTGGGAGGTGAAGCAGCTTCTGCGCCTTTGGACGAGGACTTATATTTCTATTGGCATAATATGAACTTTGGTCAACAGAATATAGGGATGTCTGAGTATTATGATCCAGGACTTCTCATAGAAGTTCCAAACCACTTATATGATTCAACAGATTATTCAGTAATTGATCAAGGTCTATTCATAGCATGA
Protein sequence

>Msa0343260

MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVREFENFESFESMHLMRNGSEMSEEGNLFALEDMTSTKKRKDVDSRHDDKEFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSGMKHSDLPSKDVGNFGVPNSANKQQNDASIDKYNYSEGSLQHQNIETKSHEGNPKGIVAHSTAAEKERALTGNITDATDIALNKPFNPLESERKRGAFDCNMSTPYSWTEIPKTQLKKEQKSLVHLEDNFNLLPLNGKQHNIQVDQSQSIASISSAPSITEQDVAACIETKPRFYDYKKDYTSSVSSRRTSVDTFPFQPGSLMMNDQPTQPISTTNFGLKTQTSNLSCISDLESYQRNLLLGGEAASAPLDEDLYFYWHNMNFGQQNIGMSEYYDPGLLIEVPNHLYDSTDYSVIDQGLFIA*