AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376070 MtrunA17_Chr3g0126551 99.721 358 1 0 1 358 1 358 0.0 739
Msa0376070 MtrunA17_Chr1g0158851 80.645 341 62 2 17 357 25 361 0.0 547
Msa0376070 MtrunA17_Chr5g0413701 68.167 311 82 4 44 353 44 338 7.08e-160 451
Msa0376070 MtrunA17_Chr8g0365071 66.019 309 90 3 45 353 44 337 5.63e-155 439
Msa0376070 MtrunA17_Chr3g0117881 64.057 281 94 3 75 350 50 328 2.63e-128 371
Msa0376070 MtrunA17_Chr5g0394371 33.178 214 135 6 95 303 51 261 8.68e-33 124
Msa0376070 MtrunA17_Chr1g0150851 29.078 282 189 8 83 358 56 332 1.13e-29 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376070 AT5G53120.1 80.286 350 67 2 8 356 8 356 0.0 559
Msa0376070 AT5G53120.4 80.286 350 67 2 8 356 8 356 0.0 559
Msa0376070 AT5G53120.2 80.286 350 67 2 8 356 8 356 0.0 559
Msa0376070 AT5G53120.5 80.286 350 67 2 8 356 8 356 0.0 559
Msa0376070 AT5G53120.3 80.286 350 67 2 8 356 8 356 0.0 559
Msa0376070 AT5G53120.7 80.286 350 67 2 8 356 25 373 0.0 558
Msa0376070 AT5G53120.6 72.414 377 75 4 8 356 8 383 0.0 550
Msa0376070 AT1G23820.1 66.775 307 86 2 44 350 36 326 2.65e-158 447
Msa0376070 AT1G70310.1 65.472 307 92 2 44 350 40 332 5.35e-154 437
Msa0376070 AT1G23820.2 60.839 286 92 2 14 293 44 315 6.92e-129 372
Msa0376070 AT5G19530.2 29.365 252 170 6 57 303 14 262 7.14e-33 125
Msa0376070 AT5G19530.1 29.365 252 170 6 57 303 21 269 1.04e-32 125

Find 199 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCACATGAAAGAAAA+TGG 0.147870 3_1:+76093820 None:intergenic
CATGAAATAATTAATGTATT+TGG 0.156868 3_1:+76087767 None:intergenic
GCCGGTTGTGATTAGTTAAT+TGG 0.182603 3_1:-76087326 Msa0376070:three_prime_UTR
GTCGAAAGGTCTTGTATAAT+TGG 0.185038 3_1:+76087477 None:intergenic
TATTGATGTATTGAGTAATT+TGG 0.190055 3_1:-76088481 Msa0376070:three_prime_UTR
TGTCACTCTACCGTTGTTTC+GGG 0.194129 3_1:-76092703 Msa0376070:CDS
CTTAATTTAATAGAGTTTAA+TGG 0.209727 3_1:-76093848 Msa0376070:five_prime_UTR
AGAGTTCAACAAGGCTTAAA+TGG 0.215102 3_1:+76088565 None:intergenic
ACATAGCAAGTGTGTTTAAA+TGG 0.233942 3_1:-76088401 Msa0376070:three_prime_UTR
GTGGAGATGGTGGGGTTCTA+AGG 0.243049 3_1:-76091399 Msa0376070:CDS
GTGAAGAAAAGGGTTATTTA+TGG 0.247821 3_1:-76092860 Msa0376070:exon
AGTTCTTTGATTGCTTCTTC+TGG 0.248742 3_1:+76093755 None:intergenic
TAGATTATTGTGGGAGAAAT+AGG 0.256539 3_1:-76088631 Msa0376070:three_prime_UTR
GAATTACATGCAATCTCTTA+TGG 0.258048 3_1:-76087273 Msa0376070:three_prime_UTR
ATTTGTCGAGAAACATTTAA+AGG 0.261361 3_1:-76089720 Msa0376070:CDS
CAAAGCCACTATTGAGAGTT+TGG 0.273249 3_1:-76087516 Msa0376070:three_prime_UTR
TTGTCACTCTACCGTTGTTT+CGG 0.279338 3_1:-76092704 Msa0376070:CDS
AGTCATTCAATAAACCTAAA+AGG 0.285726 3_1:+76087814 None:intergenic
CGGTGGAGTTCTTTGTAATA+TGG 0.303405 3_1:-76089790 Msa0376070:CDS
GGCCGAGTTGGATGAGATTT+TGG 0.309977 3_1:-76088350 Msa0376070:three_prime_UTR
GTTGGTACAAACTCTTGCTT+TGG 0.323146 3_1:-76088304 Msa0376070:three_prime_UTR
GTTCTTTGATTGCTTCTTCT+GGG 0.324975 3_1:+76093756 None:intergenic
TCTTCTCTACTTTGATTGAA+TGG 0.326205 3_1:+76092080 None:intergenic
TATCTAATACACTCTTTGTA+TGG 0.333752 3_1:-76088000 Msa0376070:three_prime_UTR
CCTTCCCATCCATAGTCTTC+TGG 0.342826 3_1:+76092809 None:intergenic
ATGGTTTCTCTACAAGTTCC+TGG 0.346919 3_1:+76089844 None:intergenic
CTTCTCTACTTTGATTGAAT+GGG 0.348057 3_1:+76092081 None:intergenic
TTGGTACAAACTCTTGCTTT+GGG 0.351156 3_1:-76088303 Msa0376070:three_prime_UTR
ATTGATGTATTGAGTAATTT+GGG 0.351222 3_1:-76088480 Msa0376070:three_prime_UTR
AATGGGTTCACAGACGGAAT+TGG 0.355718 3_1:+76088583 None:intergenic
TGAAGAAAAGGGTTATTTAT+GGG 0.362253 3_1:-76092859 Msa0376070:exon
TGGAGAGCATGTCTTGAATA+AGG 0.362663 3_1:+76089742 None:intergenic
TTAGTTGTTGGTGGTGGAGA+TGG 0.363986 3_1:-76091412 Msa0376070:CDS
TGAGTAACAAAGGAAATTCA+TGG 0.366267 3_1:+76088055 None:intergenic
ATAAGCATCGGAGGAATCTT+AGG 0.367711 3_1:-76088919 Msa0376070:CDS
TTTAAATGTTTCTCGACAAA+TGG 0.372736 3_1:+76089722 None:intergenic
TTCTCCACATGAAAGAAAAT+GGG 0.373745 3_1:+76093821 None:intergenic
TGACAATTGGCCTCCAACTC+AGG 0.374602 3_1:+76092721 None:intergenic
GGGAAAGTTCTTGTACTTGA+TGG 0.375756 3_1:-76091916 Msa0376070:CDS
TTGGTATGCAGTGGTGTGAT+AGG 0.380687 3_1:-76089022 Msa0376070:intron
TTACTCAATACATCAATAAC+TGG 0.384736 3_1:+76088486 None:intergenic
GTTGTTGGTGGTGGAGATGG+TGG 0.389147 3_1:-76091409 Msa0376070:CDS
TTGTTGGTGGTGGAGATGGT+GGG 0.396225 3_1:-76091408 Msa0376070:CDS
GATGGTGAGAGTAAAATCTA+TGG 0.398569 3_1:-76088173 Msa0376070:three_prime_UTR
GGCTTCAGCCCCTGAGTTGG+AGG 0.399000 3_1:-76092731 Msa0376070:CDS
AATCCCATTGAAAAGTTAGA+AGG 0.400616 3_1:-76088947 Msa0376070:CDS
GACTGGAGCCAGTGAAGAAA+AGG 0.401060 3_1:-76092871 Msa0376070:five_prime_UTR
ATTTAAGCCTTGTTGAACTC+TGG 0.402210 3_1:-76088563 Msa0376070:three_prime_UTR
TATTGAGTAATTTGGGATGC+AGG 0.405239 3_1:-76088473 Msa0376070:three_prime_UTR
TGTATGGGACTCCAATGATT+TGG 0.412416 3_1:-76087984 Msa0376070:three_prime_UTR
TGGATGGGAAGGCGAGTAAC+AGG 0.416616 3_1:-76092798 Msa0376070:CDS
ACGGCGTCATACCTCCCTTC+AGG 0.420015 3_1:+76091011 None:intergenic
GTATTGTACCACTAGTCATC+TGG 0.427071 3_1:-76088659 Msa0376070:three_prime_UTR
GTCACTGTACCAAGAGGTCT+TGG 0.430881 3_1:-76092041 Msa0376070:CDS
TTCAACATTAATATTAGAAG+AGG 0.438833 3_1:+76087293 None:intergenic
AACAGTCACCTGGCCACATT+GGG 0.439358 3_1:+76092513 None:intergenic
TTTGGAATGCCAGAAGACTA+TGG 0.441748 3_1:-76092818 Msa0376070:CDS
GGCGAGTAACAGGAATGGTT+TGG 0.443384 3_1:-76092788 Msa0376070:CDS
TCCAATTAACTAATCACAAC+CGG 0.446405 3_1:+76087325 None:intergenic
GAATTACAAAATAGTTATGA+TGG 0.447656 3_1:-76088191 Msa0376070:three_prime_UTR
TATAGGCCGCACCAAATCAT+TGG 0.448044 3_1:+76087973 None:intergenic
TTAAGTTTCACAATATTACT+AGG 0.448810 3_1:+76087389 None:intergenic
TTTAAGCCTTGTTGAACTCT+GGG 0.450398 3_1:-76088562 Msa0376070:three_prime_UTR
ATCTTTCAATATACTCTCTC+CGG 0.462182 3_1:-76087860 Msa0376070:three_prime_UTR
AAGTCAGAAGTTGCAGGAAA+AGG 0.463232 3_1:-76087552 Msa0376070:three_prime_UTR
TTCTCTACAAGTTCCTGGGC+AGG 0.463913 3_1:+76089849 None:intergenic
GGAAAGTTCTTGTACTTGAT+GGG 0.470422 3_1:-76091915 Msa0376070:CDS
TCAGCATCTCAAACTTGCTC+TGG 0.472000 3_1:-76092673 Msa0376070:intron
TTCAACAACCCAATGTGGCC+AGG 0.474309 3_1:-76092521 Msa0376070:intron
GAGTTCAACAAGGCTTAAAT+GGG 0.474564 3_1:+76088566 None:intergenic
ACCTCATTCTTCAGAAATGC+AGG 0.477276 3_1:+76088715 None:intergenic
TGTTGGTGGTGGAGATGGTG+GGG 0.479762 3_1:-76091407 Msa0376070:CDS
GGACGCCGTAGAAAGAGGTT+TGG 0.482254 3_1:-76092836 Msa0376070:CDS
CAGACGATATTTACACTCAT+AGG 0.483093 3_1:-76087417 Msa0376070:three_prime_UTR
ATCTGAGGAATCAACAATTA+CGG 0.484857 3_1:+76090992 None:intergenic
GTCACATTTGAAGATGAAAG+TGG 0.490722 3_1:-76088253 Msa0376070:three_prime_UTR
AGTATCCAAACTCTCAATAG+TGG 0.493375 3_1:+76087511 None:intergenic
TATTTGTGAGATAGATAAGA+TGG 0.498631 3_1:-76091341 Msa0376070:CDS
AATCAAAAGTCAGAAGTTGC+AGG 0.499303 3_1:-76087558 Msa0376070:three_prime_UTR
GCATTCCAAACCTCTTTCTA+CGG 0.502649 3_1:+76092831 None:intergenic
TTCAACAACCCGAGGCTAGC+CGG 0.503235 3_1:-76087344 Msa0376070:three_prime_UTR
AAGGTTCTGTACATTATGCA+TGG 0.503330 3_1:-76089701 Msa0376070:CDS
GCAAGGCAACATCAACATCA+AGG 0.505969 3_1:-76093882 Msa0376070:five_prime_UTR
GTAATATGGCAGAAAGTATG+TGG 0.507464 3_1:-76089776 Msa0376070:CDS
CAACTCAGGGGCTGAAGCCA+TGG 0.509823 3_1:+76092735 None:intergenic
TTCATGTTGTTTGAAAGCCA+TGG 0.510589 3_1:-76092752 Msa0376070:CDS
CTGGGGAAATAGATTATTGT+GGG 0.512870 3_1:-76088640 Msa0376070:three_prime_UTR
TTTGCGGTGTTTATTACCGT+TGG 0.514565 3_1:-76088322 Msa0376070:three_prime_UTR
TGGAGATGGTGGGGTTCTAA+GGG 0.514791 3_1:-76091398 Msa0376070:CDS
GTAATTTGGGATGCAGGGTG+TGG 0.515529 3_1:-76088467 Msa0376070:three_prime_UTR
TGAAGGGAGAGAGACCTGTC+TGG 0.518282 3_1:+76093681 None:intergenic
TGGTATGCAGTGGTGTGATA+GGG 0.519393 3_1:-76089021 Msa0376070:intron
GAAGAAAAGGGTTATTTATG+GGG 0.519700 3_1:-76092858 Msa0376070:exon
AAACTCTACCTTGGATATGT+TGG 0.521419 3_1:+76089669 None:intergenic
TATCGTCTGTCCACATGAAA+CGG 0.522259 3_1:+76087431 None:intergenic
GAATGCCAGAAGACTATGGA+TGG 0.522599 3_1:-76092814 Msa0376070:CDS
TAACAGTCACCTGGCCACAT+TGG 0.523868 3_1:+76092512 None:intergenic
AACAACGGTAGAGTGACAAT+TGG 0.525820 3_1:+76092708 None:intergenic
GGAGGAGTAGAAAATACTAA+TGG 0.526512 3_1:-76093926 None:intergenic
AATCACAACCGGCTAGCCTC+GGG 0.527262 3_1:+76087336 None:intergenic
AAAGGATGAATGTGCTTACC+AGG 0.527996 3_1:-76091875 Msa0376070:CDS
TATTGTACCACTAGTCATCT+GGG 0.529083 3_1:-76088658 Msa0376070:three_prime_UTR
TAATCACAACCGGCTAGCCT+CGG 0.533627 3_1:+76087335 None:intergenic
TTTCTTAAACGTGCACCTGA+AGG 0.534171 3_1:-76091026 Msa0376070:CDS
GACAATTGGCCTCCAACTCA+GGG 0.536122 3_1:+76092722 None:intergenic
ATCTAATACACTCTTTGTAT+GGG 0.542021 3_1:-76087999 Msa0376070:three_prime_UTR
GGAGATGAGCTATCATCTCC+TGG 0.549717 3_1:+76091857 None:intergenic
TTCTTAAACGTGCACCTGAA+GGG 0.550495 3_1:-76091025 Msa0376070:CDS
TGGTTTCTCTACAAGTTCCT+GGG 0.552051 3_1:+76089845 None:intergenic
TTTCTTCTATGCTCAACAGA+GGG 0.553053 3_1:-76088998 Msa0376070:CDS
AAAATGTGTTAAGAGTATGT+TGG 0.556141 3_1:-76087941 Msa0376070:three_prime_UTR
CAAGGCAACATCAACATCAA+GGG 0.557751 3_1:-76093881 Msa0376070:five_prime_UTR
TCAACATTAATATTAGAAGA+GGG 0.557845 3_1:+76087294 None:intergenic
GAATCTGTAATGTGGGATAG+TGG 0.558125 3_1:-76088371 Msa0376070:three_prime_UTR
TCAAACCCAACAGCTAACTC+TGG 0.559364 3_1:+76091220 None:intergenic
GGCTTAAATGGGTTCACAGA+CGG 0.559671 3_1:+76088577 None:intergenic
TGGTACAAACTCTTGCTTTG+GGG 0.562647 3_1:-76088302 Msa0376070:three_prime_UTR
GGGCTTTGAGCTAGTGACCA+TGG 0.563969 3_1:-76088282 Msa0376070:three_prime_UTR
CATGGCTTCAGCCCCTGAGT+TGG 0.564808 3_1:-76092734 Msa0376070:CDS
TGTTGATTCCTCAGATCCTG+TGG 0.566155 3_1:-76090985 Msa0376070:CDS
GGGACGGAATGGAACAGAGG+GGG 0.567127 3_1:+76091836 None:intergenic
CATATTACAAAGAACTCCAC+CGG 0.568035 3_1:+76089791 None:intergenic
CACTGACATTCACACCAGAC+AGG 0.568943 3_1:-76093695 Msa0376070:intron
TATGCTCCACAGAGCTGTGG+CGG 0.569419 3_1:+76091368 None:intergenic
AGGTTCTGTACATTATGCAT+GGG 0.569562 3_1:-76089700 Msa0376070:CDS
CTCTCAATAGTGGCTTTGCA+TGG 0.570857 3_1:+76087521 None:intergenic
TTGTAATTTAGGTCCTGCCC+AGG 0.572216 3_1:-76089862 Msa0376070:intron
TGTTTATAAATGTGATCGGA+GGG 0.575998 3_1:-76087725 Msa0376070:three_prime_UTR
ATGCTCCACAGAGCTGTGGC+GGG 0.576101 3_1:+76091369 None:intergenic
ACTGGAGCCAGTGAAGAAAA+GGG 0.576281 3_1:-76092870 Msa0376070:five_prime_UTR
ATTTGAAGATGAAAGTGGGA+AGG 0.577196 3_1:-76088248 Msa0376070:three_prime_UTR
TCTGGGGAAATAGATTATTG+TGG 0.582078 3_1:-76088641 Msa0376070:three_prime_UTR
CCAGAAGACTATGGATGGGA+AGG 0.584299 3_1:-76092809 Msa0376070:CDS
TAACAGGAATGGTTTGGAGA+AGG 0.585433 3_1:-76092782 Msa0376070:CDS
AAGAAAAGGGTTATTTATGG+GGG 0.585757 3_1:-76092857 Msa0376070:exon
GATTGTTCAGTTGACTGAAA+AGG 0.585805 3_1:-76091893 Msa0376070:CDS
ATGACATAAATAATCACGCC+TGG 0.588547 3_1:+76088606 None:intergenic
ATAGTGGCTTTGCATGGCAA+CGG 0.588983 3_1:+76087527 None:intergenic
TTGTTTATAAATGTGATCGG+AGG 0.589261 3_1:-76087726 Msa0376070:three_prime_UTR
TCACATTTGAAGATGAAAGT+GGG 0.593061 3_1:-76088252 Msa0376070:three_prime_UTR
TTAAACATCTTGAGTAACAA+AGG 0.594351 3_1:+76088045 None:intergenic
TTTGAAGATGAAAGTGGGAA+GGG 0.598264 3_1:-76088247 Msa0376070:three_prime_UTR
TCAAATGTGACAAAGTTCCA+TGG 0.601412 3_1:+76088265 None:intergenic
TCTCCACATGAAAGAAAATG+GGG 0.607718 3_1:+76093822 None:intergenic
TTACTCACCCACAGGATCTG+AGG 0.608698 3_1:+76090977 None:intergenic
TAATATTGTGAAACTTAATG+TGG 0.610663 3_1:-76087384 Msa0376070:three_prime_UTR
TAGAAGGTGCTGATAAGCAT+CGG 0.610775 3_1:-76088931 Msa0376070:CDS
ACTCTACCGTTGTTTCGGGG+TGG 0.610888 3_1:-76092699 Msa0376070:CDS
AACCAAAATCTCATCCAACT+CGG 0.613145 3_1:+76088348 None:intergenic
ATTGAGTAATTTGGGATGCA+GGG 0.616070 3_1:-76088472 Msa0376070:three_prime_UTR
GTACACTTGCATGTTGGTGA+TGG 0.618204 3_1:-76091187 Msa0376070:intron
ATTGTGACTTGAGCAATGGT+AGG 0.619747 3_1:-76087246 Msa0376070:three_prime_UTR
GTCACTCTACCGTTGTTTCG+GGG 0.620935 3_1:-76092702 Msa0376070:CDS
TTGTGGGAGAAATAGGTACC+AGG 0.621090 3_1:-76088624 Msa0376070:three_prime_UTR
GCCTGCATTTCTGAAGAATG+AGG 0.621479 3_1:-76088716 Msa0376070:CDS
TCTGGTGTGAATGTCAGTGA+GGG 0.621626 3_1:+76093699 None:intergenic
AAAGCAAGAGTTTGTACCAA+CGG 0.622544 3_1:+76088306 None:intergenic
CTATTTCCCCAGATGACTAG+TGG 0.623306 3_1:+76088651 None:intergenic
ATGGCTTTCAAACAACATGA+AGG 0.623348 3_1:+76092754 None:intergenic
CAAGCAAGCATTGCTACTGA+CGG 0.624255 3_1:+76088683 None:intergenic
TTTATTTCAACAACCCAATG+TGG 0.626443 3_1:-76092526 Msa0376070:CDS
AGTTTCACAATATTACTAGG+AGG 0.632178 3_1:+76087392 None:intergenic
TACACATTTAGTGTAAAATG+TGG 0.632403 3_1:+76087911 None:intergenic
ATGTGGGATAGTGGCCGAGT+TGG 0.633622 3_1:-76088362 Msa0376070:three_prime_UTR
AAGGCAACATCAACATCAAG+GGG 0.635113 3_1:-76093880 Msa0376070:five_prime_UTR
ATTTGTGTAACCGTTTCATG+TGG 0.640906 3_1:-76087441 Msa0376070:three_prime_UTR
CAAGTGTTCCAACATATCCA+AGG 0.643163 3_1:-76089677 Msa0376070:intron
CAATATGCTCCACAGAGCTG+TGG 0.644313 3_1:+76091365 None:intergenic
TTCTTCTATGCTCAACAGAG+GGG 0.645049 3_1:-76088997 Msa0376070:CDS
GTTTCTTCTATGCTCAACAG+AGG 0.646189 3_1:-76088999 Msa0376070:CDS
GGGACTCCAATGATTTGGTG+CGG 0.650425 3_1:-76087979 Msa0376070:three_prime_UTR
TTAAACGTGCACCTGAAGGG+AGG 0.651100 3_1:-76091022 Msa0376070:CDS
TCTTATGCAGATACATACAG+CGG 0.652959 3_1:-76088749 Msa0376070:intron
GTCTGGTGTGAATGTCAGTG+AGG 0.653488 3_1:+76093698 None:intergenic
AGTATCCCGCCACAGCTCTG+TGG 0.654087 3_1:-76091374 Msa0376070:CDS
TGTGAAACTTAATGTGGACG+AGG 0.656167 3_1:-76087378 Msa0376070:three_prime_UTR
GGGAAGGCGAGTAACAGGAA+TGG 0.657558 3_1:-76092793 Msa0376070:CDS
GGGTTCACAAAATCAACATG+CGG 0.658739 3_1:+76088974 None:intergenic
ATATCTAAGGCATTAAGACC+CGG 0.667528 3_1:-76089810 Msa0376070:CDS
AAAACTCTTTCAACAACCCG+AGG 0.667762 3_1:-76087352 Msa0376070:three_prime_UTR
CCTCGTGTACACTTGCATGT+TGG 0.668273 3_1:-76091193 Msa0376070:CDS
TTTGATTGTGACTTGAGCAA+TGG 0.670072 3_1:-76087250 Msa0376070:three_prime_UTR
AGAAAAGTCACTGTACCAAG+AGG 0.670694 3_1:-76092047 Msa0376070:CDS
AATGCCAGAAGACTATGGAT+GGG 0.672149 3_1:-76092813 Msa0376070:CDS
CCAACATGCAAGTGTACACG+AGG 0.673468 3_1:+76091193 None:intergenic
AGTAGCAGACGAGTAAGCAA+CGG 0.682687 3_1:-76088136 Msa0376070:three_prime_UTR
TGAGAACCACCCCGAAACAA+CGG 0.682894 3_1:+76092693 None:intergenic
GTTGATTCCTCAGATCCTGT+GGG 0.684990 3_1:-76090984 Msa0376070:intron
ATATTACAAAGAACTCCACC+GGG 0.685339 3_1:+76089792 None:intergenic
GGGGACGGAATGGAACAGAG+GGG 0.690224 3_1:+76091835 None:intergenic
AAGGTGCTGATAAGCATCGG+AGG 0.691606 3_1:-76088928 Msa0376070:CDS
TCTTAGGTTCTATAACTCAG+AGG 0.692345 3_1:-76088903 Msa0376070:intron
ACAATTGGCCTCCAACTCAG+GGG 0.704373 3_1:+76092723 None:intergenic
TCTAAGGCATTAAGACCCGG+TGG 0.707720 3_1:-76089807 Msa0376070:CDS
CATTTCTGAAGAATGAGGTG+AGG 0.708001 3_1:-76088711 Msa0376070:CDS
ATTGTACCACTAGTCATCTG+GGG 0.716756 3_1:-76088657 Msa0376070:three_prime_UTR
ATATTGCCCAGAGTTCAACA+AGG 0.749555 3_1:+76088556 None:intergenic
GGGTGTTGTTGATAGAAACG+CGG 0.762980 3_1:+76093719 None:intergenic
AGGCAACATCAACATCAAGG+GGG 0.776880 3_1:-76093879 Msa0376070:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAATATTAATTAATCTAT+GGG + chr3_1:76087554-76087573 None:intergenic 10.0%
!! TTGTAATATTAATTAATCTA+TGG + chr3_1:76087555-76087574 None:intergenic 10.0%
!!! TAGTTCAATATAAATATTTT+AGG + chr3_1:76091139-76091158 None:intergenic 10.0%
!! AAATAAGTAAATACAATATA+TGG + chr3_1:76092267-76092286 None:intergenic 10.0%
!!! ACTTATTTAACTTTATTTAT+TGG - chr3_1:76092279-76092298 Msa0376070:intron 10.0%
!! CTTAATTTAATAGAGTTTAA+TGG - chr3_1:76087284-76087303 Msa0376070:three_prime_UTR 15.0%
!! GTAATATTAATTAATCTATG+GGG + chr3_1:76087553-76087572 None:intergenic 15.0%
!!! TCACTTTTATTTTATATTTC+AGG - chr3_1:76087903-76087922 Msa0376070:three_prime_UTR 15.0%
!!! ATATCTTTGAAAATAACTTT+TGG - chr3_1:76088866-76088885 Msa0376070:intron 15.0%
!!! TAATTTTTATGTGTATATGA+CGG - chr3_1:76088989-76089008 Msa0376070:CDS 15.0%
!! AAAATATTAAAGAATAGAGT+AGG + chr3_1:76089517-76089536 None:intergenic 15.0%
!!! AATTTTTATGATGTTATTTC+AGG - chr3_1:76089695-76089714 Msa0376070:CDS 15.0%
!! TGAGTAATTTAAATTCAAAA+TGG - chr3_1:76090171-76090190 Msa0376070:intron 15.0%
!! TCTGATTTATCTATTTATTT+AGG + chr3_1:76090564-76090583 None:intergenic 15.0%
!!! TTCTTTAAAAGTAAAATCAA+AGG + chr3_1:76091538-76091557 None:intergenic 15.0%
!!! CTTTGTTATAATTGAATTTT+TGG - chr3_1:76091930-76091949 Msa0376070:CDS 15.0%
!!! TTTTGTAATTCAATATACAT+AGG + chr3_1:76092932-76092951 None:intergenic 15.0%
!!! TAAACAAAATATAACCTTTT+AGG - chr3_1:76093304-76093323 Msa0376070:intron 15.0%
!! CATGAAATAATTAATGTATT+TGG + chr3_1:76093368-76093387 None:intergenic 15.0%
!!! TAAACAAAAAACAACTTTTT+AGG + chr3_1:76093393-76093412 None:intergenic 15.0%
!!! TTTTTGTTTATAAATGTGAT+CGG - chr3_1:76093403-76093422 Msa0376070:intron 15.0%
!!! GGGTATTTTCTTAATATAAT+TGG + chr3_1:76087645-76087664 None:intergenic 20.0%
!! TCAAATAAGAAAACAAAACA+GGG + chr3_1:76087665-76087684 None:intergenic 20.0%
!! ATCAAATAAGAAAACAAAAC+AGG + chr3_1:76087666-76087685 None:intergenic 20.0%
!!! TTACATGTGATTTTGTTTTT+TGG - chr3_1:76088068-76088087 Msa0376070:three_prime_UTR 20.0%
!!! TACATGTGATTTTGTTTTTT+GGG - chr3_1:76088069-76088088 Msa0376070:three_prime_UTR 20.0%
!!! TTTTTTTACAGAAAAATCAG+AGG - chr3_1:76088577-76088596 Msa0376070:three_prime_UTR 20.0%
!! ACACATAAAAATTACATACT+TGG + chr3_1:76088983-76089002 None:intergenic 20.0%
!! GAATAAAAAGAGAACAATAT+AGG + chr3_1:76089140-76089159 None:intergenic 20.0%
!!! TTTTTACAGTCATTAACATA+TGG - chr3_1:76089195-76089214 Msa0376070:intron 20.0%
!!! TTTTACAGTCATTAACATAT+GGG - chr3_1:76089196-76089215 Msa0376070:intron 20.0%
!!! TCAAAAGACTTTACATTTTT+GGG + chr3_1:76089321-76089340 None:intergenic 20.0%
!!! ATCAAAAGACTTTACATTTT+TGG + chr3_1:76089322-76089341 None:intergenic 20.0%
!! CATAAAAATTATTTAGCAGA+CGG + chr3_1:76089685-76089704 None:intergenic 20.0%
!! AAACAATATGAAAGAAATCA+CGG + chr3_1:76090999-76091018 None:intergenic 20.0%
!!! TTTCTTTCATATTGTTTTGT+TGG - chr3_1:76091002-76091021 Msa0376070:CDS 20.0%
!!! ATTTTAGGAACAAAAATTCA+GGG + chr3_1:76091124-76091143 None:intergenic 20.0%
!!! TATTTTAGGAACAAAAATTC+AGG + chr3_1:76091125-76091144 None:intergenic 20.0%
!! CATTACATGAAATTAATAAG+TGG + chr3_1:76091185-76091204 None:intergenic 20.0%
!!! CAATATCACTTTTGTAATTT+AGG - chr3_1:76091259-76091278 Msa0376070:intron 20.0%
!! TTAGATATAGTCTCAAAAAA+TGG + chr3_1:76091310-76091329 None:intergenic 20.0%
!!! ATTTTTTGAGACTATATCTA+AGG - chr3_1:76091309-76091328 Msa0376070:intron 20.0%
!!! ATTGAATTTTTGGTTTAAGA+AGG - chr3_1:76091940-76091959 Msa0376070:intron 20.0%
!!! ACTAAACATGATTGTAATTT+TGG - chr3_1:76092038-76092057 Msa0376070:CDS 20.0%
!!! AAATTTTGCAACAAAATATC+AGG - chr3_1:76092305-76092324 Msa0376070:intron 20.0%
!! TATTGATGTATTGAGTAATT+TGG - chr3_1:76092651-76092670 Msa0376070:intron 20.0%
!! ATTGATGTATTGAGTAATTT+GGG - chr3_1:76092652-76092671 Msa0376070:intron 20.0%
!! GAATTACAAAATAGTTATGA+TGG - chr3_1:76092941-76092960 Msa0376070:intron 20.0%
!!! CACATTTTTAAACACTATAT+AGG + chr3_1:76093179-76093198 None:intergenic 20.0%
!!! ATTTTGTTTATAAATGTGAC+CGG + chr3_1:76093294-76093313 None:intergenic 20.0%
!!! ATTCTAAAATTTTGAATGAG+TGG + chr3_1:76093499-76093518 None:intergenic 20.0%
!! TTAAGTTTCACAATATTACT+AGG + chr3_1:76093746-76093765 None:intergenic 20.0%
!! TAATATTGTGAAACTTAATG+TGG - chr3_1:76093748-76093767 Msa0376070:five_prime_UTR 20.0%
!! TCAACATTAATATTAGAAGA+GGG + chr3_1:76093841-76093860 None:intergenic 20.0%
!! TTCAACATTAATATTAGAAG+AGG + chr3_1:76093842-76093861 None:intergenic 20.0%
!! AATGGCATAGTGTATTTTAT+TGG - chr3_1:76087224-76087243 Msa0376070:three_prime_UTR 25.0%
!! ATGGCATAGTGTATTTTATT+GGG - chr3_1:76087225-76087244 Msa0376070:three_prime_UTR 25.0%
! TTTATTGTTGATACTTTGCT+TGG - chr3_1:76088042-76088061 Msa0376070:three_prime_UTR 25.0%
!!! ACATGTGATTTTGTTTTTTG+GGG - chr3_1:76088070-76088089 Msa0376070:three_prime_UTR 25.0%
!!! TTAATTTTTTGTGTGACAAC+TGG - chr3_1:76088221-76088240 Msa0376070:three_prime_UTR 25.0%
! TGTATTAATTATACAGAGAC+TGG - chr3_1:76088244-76088263 Msa0376070:three_prime_UTR 25.0%
! TGAAGAAAAGGGTTATTTAT+GGG - chr3_1:76088273-76088292 Msa0376070:three_prime_UTR 25.0%
!! AAACAAAAGATTGTTGTTAG+TGG + chr3_1:76088543-76088562 None:intergenic 25.0%
! ATCAAACTTACTACATATTG+AGG - chr3_1:76088924-76088943 Msa0376070:CDS 25.0%
! GTTAATCACTTCTCATTTAT+AGG + chr3_1:76089165-76089184 None:intergenic 25.0%
!!! AAAAGACTTTACATTTTTGG+GGG + chr3_1:76089319-76089338 None:intergenic 25.0%
!! CAAAAGACTTTACATTTTTG+GGG + chr3_1:76089320-76089339 None:intergenic 25.0%
! ACAAAATATTGAAGTAACGT+TGG - chr3_1:76089391-76089410 Msa0376070:intron 25.0%
! TTATCATCTTGACAATGTAT+TGG - chr3_1:76089544-76089563 Msa0376070:intron 25.0%
!!! TTATTTCAGGTTTTAGTTGT+TGG - chr3_1:76089708-76089727 Msa0376070:CDS 25.0%
! TATTTGTGAGATAGATAAGA+TGG - chr3_1:76089791-76089810 Msa0376070:CDS 25.0%
! ATGGTTATTGATGTAAGTTA+TGG - chr3_1:76089810-76089829 Msa0376070:CDS 25.0%
! ATGAAATGAACTTATTGCAA+TGG - chr3_1:76089860-76089879 Msa0376070:intron 25.0%
!!! TATTGCAATGGTTATTTTGT+AGG - chr3_1:76089872-76089891 Msa0376070:intron 25.0%
!! TTACTGGTTACAAACTATTA+AGG - chr3_1:76090028-76090047 Msa0376070:intron 25.0%
! CAGTAAATAATGCACATTAT+TGG - chr3_1:76090209-76090228 Msa0376070:intron 25.0%
! CAGTAAATAATGCACATTAT+TGG - chr3_1:76090209-76090228 Msa0376070:intron 25.0%
!! TCTATATTTTCTCACTAGTA+TGG - chr3_1:76090350-76090369 Msa0376070:intron 25.0%
! AAATTGCTTAACTAGATCAT+TGG - chr3_1:76090373-76090392 Msa0376070:intron 25.0%
!!! TGTGGGTTTTAGATAAAAAA+AGG - chr3_1:76090436-76090455 Msa0376070:intron 25.0%
!!! AGATACTGATTCATATTTGT+AGG - chr3_1:76090521-76090540 Msa0376070:intron 25.0%
!!! GATACTGATTCATATTTGTA+GGG - chr3_1:76090522-76090541 Msa0376070:intron 25.0%
! GATACTCGAAAATTATAAAG+TGG - chr3_1:76090640-76090659 Msa0376070:intron 25.0%
! GAGATACTATTAGATATTGA+AGG - chr3_1:76090700-76090719 Msa0376070:intron 25.0%
!! AGTTAGTTATGTTAGTTTCA+GGG + chr3_1:76090749-76090768 None:intergenic 25.0%
!! TAGTTAGTTATGTTAGTTTC+AGG + chr3_1:76090750-76090769 None:intergenic 25.0%
!!! GTATCTTTTTTGTCTTTGAT+GGG + chr3_1:76090792-76090811 None:intergenic 25.0%
!!! AGTATCTTTTTTGTCTTTGA+TGG + chr3_1:76090793-76090812 None:intergenic 25.0%
! CTGAAATTTCTCATAAATGA+AGG + chr3_1:76090899-76090918 None:intergenic 25.0%
! ATGACTTTAGATTGTTTCAT+TGG - chr3_1:76090921-76090940 Msa0376070:intron 25.0%
! AACAAAAATTCAGGGAAAAT+CGG + chr3_1:76091116-76091135 None:intergenic 25.0%
! TAAAAATAACCAACCAGAAA+AGG + chr3_1:76091228-76091247 None:intergenic 25.0%
! TTTAAATGTTTCTCGACAAA+TGG + chr3_1:76091413-76091432 None:intergenic 25.0%
! ATTTGTCGAGAAACATTTAA+AGG - chr3_1:76091412-76091431 Msa0376070:CDS 25.0%
! GTTTACACTATTCAAATTAC+TGG - chr3_1:76091482-76091501 Msa0376070:intron 25.0%
!!! TAAGGGTAATTTTTTTACAG+TGG - chr3_1:76091599-76091618 Msa0376070:intron 25.0%
!!! AAGGGTAATTTTTTTACAGT+GGG - chr3_1:76091600-76091619 Msa0376070:intron 25.0%
!! ACCATAATCACAAATTTTGT+GGG + chr3_1:76091683-76091702 None:intergenic 25.0%
!! AACCATAATCACAAATTTTG+TGG + chr3_1:76091684-76091703 None:intergenic 25.0%
! ACAAAATTTGTGATTATGGT+TGG - chr3_1:76091683-76091702 Msa0376070:intron 25.0%
!! TTTGTAACATTTTCAACAAG+TGG + chr3_1:76091753-76091772 None:intergenic 25.0%
!! TTTGTAACATTTTCAACAAG+TGG + chr3_1:76091753-76091772 None:intergenic 25.0%
! TATGTATCTGCATAAGAAAA+GGG + chr3_1:76092380-76092399 None:intergenic 25.0%
!!! ATATTATTAGCCTCTTTTTG+TGG - chr3_1:76092595-76092614 Msa0376070:intron 25.0%
! TTACTCAATACATCAATAAC+TGG + chr3_1:76092649-76092668 None:intergenic 25.0%
! TTAAACATCTTGAGTAACAA+AGG + chr3_1:76093090-76093109 None:intergenic 25.0%
! TATCTAATACACTCTTTGTA+TGG - chr3_1:76093132-76093151 Msa0376070:intron 25.0%
! ATCTAATACACTCTTTGTAT+GGG - chr3_1:76093133-76093152 Msa0376070:intron 25.0%
!! AAAATGTGTTAAGAGTATGT+TGG - chr3_1:76093191-76093210 Msa0376070:intron 25.0%
! TACACATTTAGTGTAAAATG+TGG + chr3_1:76093224-76093243 None:intergenic 25.0%
! AGTCATTCAATAAACCTAAA+AGG + chr3_1:76093321-76093340 None:intergenic 25.0%
TTCTCCACATGAAAGAAAAT+GGG + chr3_1:76087314-76087333 None:intergenic 30.0%
ATTCTCCACATGAAAGAAAA+TGG + chr3_1:76087315-76087334 None:intergenic 30.0%
ATCAACATGTATGTACTTGA+TGG - chr3_1:76087688-76087707 Msa0376070:three_prime_UTR 30.0%
AAATTAAGGCAATTGTAGCA+TGG + chr3_1:76087724-76087743 None:intergenic 30.0%
! CTTTTAAGCTTTGCTAAACT+GGG - chr3_1:76088017-76088036 Msa0376070:three_prime_UTR 30.0%
!!! CATGTGATTTTGTTTTTTGG+GGG - chr3_1:76088071-76088090 Msa0376070:three_prime_UTR 30.0%
TCATTCTCTGTTCTGTTATT+TGG - chr3_1:76088111-76088130 Msa0376070:three_prime_UTR 30.0%
! TAAATAACCCTTTTCTTCAC+TGG + chr3_1:76088272-76088291 None:intergenic 30.0%
GTGAAGAAAAGGGTTATTTA+TGG - chr3_1:76088272-76088291 Msa0376070:three_prime_UTR 30.0%
GAAGAAAAGGGTTATTTATG+GGG - chr3_1:76088274-76088293 Msa0376070:three_prime_UTR 30.0%
AAGAAAAGGGTTATTTATGG+GGG - chr3_1:76088275-76088294 Msa0376070:three_prime_UTR 30.0%
GAAAGGAAATGGGAAATATA+TGG + chr3_1:76088516-76088535 None:intergenic 30.0%
! AAAGATTGTTGTTAGTGGAA+TGG + chr3_1:76088538-76088557 None:intergenic 30.0%
TTTATTTCAACAACCCAATG+TGG - chr3_1:76088606-76088625 Msa0376070:three_prime_UTR 30.0%
TTCATGTATACTTGCAACTT+TGG - chr3_1:76088667-76088686 Msa0376070:three_prime_UTR 30.0%
! TTGAAAATAACTTTTGGCCA+AGG - chr3_1:76088872-76088891 Msa0376070:intron 30.0%
! AACATTTAGTTTATCCTCCT+TGG + chr3_1:76088892-76088911 None:intergenic 30.0%
CTTCTCTACTTTGATTGAAT+GGG + chr3_1:76089054-76089073 None:intergenic 30.0%
TCTTCTCTACTTTGATTGAA+TGG + chr3_1:76089055-76089074 None:intergenic 30.0%
ACAGTTCTCTATTATCACTT+AGG - chr3_1:76089429-76089448 Msa0376070:intron 30.0%
CAGTTCTCTATTATCACTTA+GGG - chr3_1:76089430-76089449 Msa0376070:intron 30.0%
AGTTCTCTATTATCACTTAG+GGG - chr3_1:76089431-76089450 Msa0376070:intron 30.0%
!! TCTTGACAATGTATTGGTTA+TGG - chr3_1:76089550-76089569 Msa0376070:intron 30.0%
GAGACTGACTAAAATTTGAA+AGG - chr3_1:76089610-76089629 Msa0376070:intron 30.0%
AAAAATTATTTAGCAGACGG+TGG + chr3_1:76089682-76089701 None:intergenic 30.0%
!! TGGTTATTTTGTAGGTTTCT+AGG - chr3_1:76089880-76089899 Msa0376070:intron 30.0%
CAGTAAATTAAAGCCATAGT+TGG + chr3_1:76090014-76090033 None:intergenic 30.0%
!! CAACTATGGCTTTAATTTAC+TGG - chr3_1:76090012-76090031 Msa0376070:intron 30.0%
ATTCAATAGCTGGCAAAAAT+GGG + chr3_1:76090087-76090106 None:intergenic 30.0%
AATTCAATAGCTGGCAAAAA+TGG + chr3_1:76090088-76090107 None:intergenic 30.0%
CGTTTAAGAAATTCAATAGC+TGG + chr3_1:76090097-76090116 None:intergenic 30.0%
ATCTGAGGAATCAACAATTA+CGG + chr3_1:76090143-76090162 None:intergenic 30.0%
AATTTAAATTACTCACCCAC+AGG + chr3_1:76090166-76090185 None:intergenic 30.0%
! ATGAAAAAAGTCGTGTTTTG+AGG - chr3_1:76090323-76090342 Msa0376070:intron 30.0%
TGTGTTAGATTGAGATACAA+GGG + chr3_1:76090405-76090424 None:intergenic 30.0%
TGGTCTAATGAGATAAACTA+AGG - chr3_1:76090660-76090679 Msa0376070:intron 30.0%
ATATTGAAGGAGTTTGAAAG+AGG - chr3_1:76090713-76090732 Msa0376070:intron 30.0%
! GTTAGTTATGTTAGTTTCAG+GGG + chr3_1:76090748-76090767 None:intergenic 30.0%
!! TTTCATATTGTTTTGTTGGC+TGG - chr3_1:76091006-76091025 Msa0376070:CDS 30.0%
ACATGTAGAAACAGAAAACT+TGG + chr3_1:76091571-76091590 None:intergenic 30.0%
TCCCACAAAATTTGTGATTA+TGG - chr3_1:76091679-76091698 Msa0376070:intron 30.0%
! AGATTTTTACTTGCCTAGTT+TGG - chr3_1:76091967-76091986 Msa0376070:intron 30.0%
ATCATGTTTAGTAACTGTCA+GGG + chr3_1:76092030-76092049 None:intergenic 30.0%
AATCATGTTTAGTAACTGTC+AGG + chr3_1:76092031-76092050 None:intergenic 30.0%
! TTGGTTCATCTTGATAGTAT+TGG - chr3_1:76092057-76092076 Msa0376070:CDS 30.0%
TGCTTATTGTATTCCTTTCT+TGG - chr3_1:76092091-76092110 Msa0376070:intron 30.0%
! AACTTTTCAATGGGATTGAT+GGG + chr3_1:76092182-76092201 None:intergenic 30.0%
! TAACTTTTCAATGGGATTGA+TGG + chr3_1:76092183-76092202 None:intergenic 30.0%
AATCCCATTGAAAAGTTAGA+AGG - chr3_1:76092185-76092204 Msa0376070:intron 30.0%
ATAACTCAGAGGTAAGTATA+TGG - chr3_1:76092240-76092259 Msa0376070:intron 30.0%
GTATGTATCTGCATAAGAAA+AGG + chr3_1:76092381-76092400 None:intergenic 30.0%
TAGATTATTGTGGGAGAAAT+AGG - chr3_1:76092501-76092520 Msa0376070:intron 30.0%
TTAAACACAACCACAAAAAG+AGG + chr3_1:76092608-76092627 None:intergenic 30.0%
ACATAGCAAGTGTGTTTAAA+TGG - chr3_1:76092731-76092750 Msa0376070:CDS 30.0%
! CTTTTGTGAATCTGTAATGT+GGG - chr3_1:76092754-76092773 Msa0376070:CDS 30.0%
!!! TGAGATTTTGGTTGAATTTG+CGG - chr3_1:76092794-76092813 Msa0376070:CDS 30.0%
TCACATTTGAAGATGAAAGT+GGG - chr3_1:76092880-76092899 Msa0376070:intron 30.0%
TGAGTAACAAAGGAAATTCA+TGG + chr3_1:76093080-76093099 None:intergenic 30.0%
ATCTTTCAATATACTCTCTC+CGG - chr3_1:76093272-76093291 Msa0376070:intron 30.0%
TTGTTTATAAATGTGATCGG+AGG - chr3_1:76093406-76093425 Msa0376070:intron 30.0%
TGTTTATAAATGTGATCGGA+GGG - chr3_1:76093407-76093426 Msa0376070:intron 30.0%
! TACCAAAACTTTTTGTCGAA+AGG + chr3_1:76093672-76093691 None:intergenic 30.0%
AGTTTCACAATATTACTAGG+AGG + chr3_1:76093743-76093762 None:intergenic 30.0%
TCCAATTAACTAATCACAAC+CGG + chr3_1:76093810-76093829 None:intergenic 30.0%
GAATTACATGCAATCTCTTA+TGG - chr3_1:76093859-76093878 Msa0376070:five_prime_UTR 30.0%
! GCATAGTGTATTTTATTGGG+TGG - chr3_1:76087228-76087247 Msa0376070:three_prime_UTR 35.0%
! AATCCCCATTTTCTTTCATG+TGG - chr3_1:76087307-76087326 Msa0376070:three_prime_UTR 35.0%
TCTCCACATGAAAGAAAATG+GGG + chr3_1:76087313-76087332 None:intergenic 35.0%
GTTCTTTGATTGCTTCTTCT+GGG + chr3_1:76087379-76087398 None:intergenic 35.0%
AGTTCTTTGATTGCTTCTTC+TGG + chr3_1:76087380-76087399 None:intergenic 35.0%
AAAAACGAAACAGAGAGAAG+AGG + chr3_1:76087479-76087498 None:intergenic 35.0%
TTTATTGAGCGCAACTACTA+GGG + chr3_1:76087526-76087545 None:intergenic 35.0%
! TTAATTTTCCCCCCTTTTTC+TGG - chr3_1:76087858-76087877 Msa0376070:three_prime_UTR 35.0%
AAAACAAGCCACCAGAAAAA+GGG + chr3_1:76087872-76087891 None:intergenic 35.0%
! GCTTTTAAGCTTTGCTAAAC+TGG - chr3_1:76088016-76088035 Msa0376070:three_prime_UTR 35.0%
ATGGCTTTCAAACAACATGA+AGG + chr3_1:76088381-76088400 None:intergenic 35.0%
! TTCATGTTGTTTGAAAGCCA+TGG - chr3_1:76088380-76088399 Msa0376070:three_prime_UTR 35.0%
TAGTGGAATGGAAAGGAAAT+GGG + chr3_1:76088526-76088545 None:intergenic 35.0%
TTAGTGGAATGGAAAGGAAA+TGG + chr3_1:76088527-76088546 None:intergenic 35.0%
! TTGTTGTTAGTGGAATGGAA+AGG + chr3_1:76088533-76088552 None:intergenic 35.0%
!! CAATCTTTTGTTTCATCGTG+TGG - chr3_1:76088550-76088569 Msa0376070:three_prime_UTR 35.0%
TATGCAAAATAACAGTCACC+TGG + chr3_1:76088632-76088651 None:intergenic 35.0%
!!! GGTGACTGTTATTTTGCATA+TGG - chr3_1:76088632-76088651 Msa0376070:three_prime_UTR 35.0%
ATATTCATCCTTCTCCATGA+AGG + chr3_1:76088813-76088832 None:intergenic 35.0%
TTCATGGAGAAGGATGAATA+TGG - chr3_1:76088812-76088831 Msa0376070:intron 35.0%
TCATGGAGAAGGATGAATAT+GGG - chr3_1:76088813-76088832 Msa0376070:intron 35.0%
! AAAATAACTTTTGGCCAAGG+AGG - chr3_1:76088875-76088894 Msa0376070:intron 35.0%
! TTTGGTGTGTGTCTATCATT+AGG - chr3_1:76089023-76089042 Msa0376070:intron 35.0%
GGAAAGTTCTTGTACTTGAT+GGG - chr3_1:76089217-76089236 Msa0376070:intron 35.0%
GATTGTTCAGTTGACTGAAA+AGG - chr3_1:76089239-76089258 Msa0376070:intron 35.0%
TGATCTGATCATCAGTGTAT+TGG - chr3_1:76089338-76089357 Msa0376070:intron 35.0%
GATCTGATCATCAGTGTATT+GGG - chr3_1:76089339-76089358 Msa0376070:intron 35.0%
TTGAGACTGCTGAATATCAA+AGG + chr3_1:76089483-76089502 None:intergenic 35.0%
! CCATACACATATAAGAGCAT+TGG + chr3_1:76089578-76089597 None:intergenic 35.0%
CCAATGCTCTTATATGTGTA+TGG - chr3_1:76089575-76089594 Msa0376070:intron 35.0%
ATGCTCTTATATGTGTATGG+AGG - chr3_1:76089578-76089597 Msa0376070:intron 35.0%
TGGAAACAGTATGGGAAAAA+AGG + chr3_1:76089662-76089681 None:intergenic 35.0%
!!! TTTCAGGTTTTAGTTGTTGG+TGG - chr3_1:76089711-76089730 Msa0376070:CDS 35.0%
!!! TTTTTTCCAGAGTTAGCTGT+TGG - chr3_1:76089906-76089925 Msa0376070:intron 35.0%
! TTTTTCCAGAGTTAGCTGTT+GGG - chr3_1:76089907-76089926 Msa0376070:intron 35.0%
!! GTTTGTTATCATGCCAACTA+TGG - chr3_1:76089998-76090017 Msa0376070:intron 35.0%
!!! AAAAAAGTCGTGTTTTGAGG+AGG - chr3_1:76090326-76090345 Msa0376070:intron 35.0%
TAGATTGAGATACAAGGGTT+GGG + chr3_1:76090400-76090419 None:intergenic 35.0%
TTAGATTGAGATACAAGGGT+TGG + chr3_1:76090401-76090420 None:intergenic 35.0%
GTGTGTTAGATTGAGATACA+AGG + chr3_1:76090406-76090425 None:intergenic 35.0%
! TAACACACTTTTCGAAGTTG+TGG - chr3_1:76090418-76090437 Msa0376070:intron 35.0%
! AACACACTTTTCGAAGTTGT+GGG - chr3_1:76090419-76090438 Msa0376070:intron 35.0%
AACAGAGCTGATATGAATAG+TGG + chr3_1:76090855-76090874 None:intergenic 35.0%
!! TAGATTCTTCCTTTTCTGGT+TGG - chr3_1:76091216-76091235 Msa0376070:CDS 35.0%
! ATATCTAAGGCATTAAGACC+CGG - chr3_1:76091322-76091341 Msa0376070:intron 35.0%
ATATTACAAAGAACTCCACC+GGG + chr3_1:76091343-76091362 None:intergenic 35.0%
CATATTACAAAGAACTCCAC+CGG + chr3_1:76091344-76091363 None:intergenic 35.0%
! GTAATATGGCAGAAAGTATG+TGG - chr3_1:76091356-76091375 Msa0376070:CDS 35.0%
AAGGTTCTGTACATTATGCA+TGG - chr3_1:76091431-76091450 Msa0376070:intron 35.0%
AGGTTCTGTACATTATGCAT+GGG - chr3_1:76091432-76091451 Msa0376070:intron 35.0%
AAACTCTACCTTGGATATGT+TGG + chr3_1:76091466-76091485 None:intergenic 35.0%
GAATAGTGTAAACTCTACCT+TGG + chr3_1:76091475-76091494 None:intergenic 35.0%
TTCTACATGTTGTGAGAGTA+AGG - chr3_1:76091581-76091600 Msa0376070:intron 35.0%
TCTACATGTTGTGAGAGTAA+GGG - chr3_1:76091582-76091601 Msa0376070:intron 35.0%
ATTACTGAAGATCCATCAGT+GGG + chr3_1:76091653-76091672 None:intergenic 35.0%
AATTACTGAAGATCCATCAG+TGG + chr3_1:76091654-76091673 None:intergenic 35.0%
! GTGTTGCTGGAAAAATTCAT+AGG - chr3_1:76091707-76091726 Msa0376070:intron 35.0%
TTTCACATTACCTTCTTGAG+AGG - chr3_1:76091902-76091921 Msa0376070:CDS 35.0%
ACTAGGCAAGTAAAAATCTC+AGG + chr3_1:76091966-76091985 None:intergenic 35.0%
!!! TTGGCATTTTGGAACAGTAT+AGG - chr3_1:76091986-76092005 Msa0376070:intron 35.0%
!!! TGGCATTTTGGAACAGTATA+GGG - chr3_1:76091987-76092006 Msa0376070:intron 35.0%
TTTCTTCTATGCTCAACAGA+GGG - chr3_1:76092134-76092153 Msa0376070:intron 35.0%
! ACTTTTCAATGGGATTGATG+GGG + chr3_1:76092181-76092200 None:intergenic 35.0%
! GCACCTTCTAACTTTTCAAT+GGG + chr3_1:76092191-76092210 None:intergenic 35.0%
! AGCACCTTCTAACTTTTCAA+TGG + chr3_1:76092192-76092211 None:intergenic 35.0%
TCTTAGGTTCTATAACTCAG+AGG - chr3_1:76092229-76092248 Msa0376070:intron 35.0%
TCTTATGCAGATACATACAG+CGG - chr3_1:76092383-76092402 Msa0376070:intron 35.0%
TATTGTACCACTAGTCATCT+GGG - chr3_1:76092474-76092493 Msa0376070:intron 35.0%
TCTGGGGAAATAGATTATTG+TGG - chr3_1:76092491-76092510 Msa0376070:intron 35.0%
CTGGGGAAATAGATTATTGT+GGG - chr3_1:76092492-76092511 Msa0376070:intron 35.0%
ATGACATAAATAATCACGCC+TGG + chr3_1:76092529-76092548 None:intergenic 35.0%
GAGTTCAACAAGGCTTAAAT+GGG + chr3_1:76092569-76092588 None:intergenic 35.0%
AGAGTTCAACAAGGCTTAAA+TGG + chr3_1:76092570-76092589 None:intergenic 35.0%
!! ATTTAAGCCTTGTTGAACTC+TGG - chr3_1:76092569-76092588 Msa0376070:intron 35.0%
!! TTTAAGCCTTGTTGAACTCT+GGG - chr3_1:76092570-76092589 Msa0376070:intron 35.0%
! TATTGAGTAATTTGGGATGC+AGG - chr3_1:76092659-76092678 Msa0376070:intron 35.0%
! ATTGAGTAATTTGGGATGCA+GGG - chr3_1:76092660-76092679 Msa0376070:intron 35.0%
! GCTTTTGTGAATCTGTAATG+TGG - chr3_1:76092753-76092772 Msa0376070:CDS 35.0%
AACCAAAATCTCATCCAACT+CGG + chr3_1:76092787-76092806 None:intergenic 35.0%
AAAGCAAGAGTTTGTACCAA+CGG + chr3_1:76092829-76092848 None:intergenic 35.0%
TTGGTACAAACTCTTGCTTT+GGG - chr3_1:76092829-76092848 Msa0376070:CDS 35.0%
TCAAATGTGACAAAGTTCCA+TGG + chr3_1:76092870-76092889 None:intergenic 35.0%
GTCACATTTGAAGATGAAAG+TGG - chr3_1:76092879-76092898 Msa0376070:intron 35.0%
ATTTGAAGATGAAAGTGGGA+AGG - chr3_1:76092884-76092903 Msa0376070:intron 35.0%
TTTGAAGATGAAAGTGGGAA+GGG - chr3_1:76092885-76092904 Msa0376070:intron 35.0%
GATGGTGAGAGTAAAATCTA+TGG - chr3_1:76092959-76092978 Msa0376070:intron 35.0%
AATCAAAAGTCAGAAGTTGC+AGG - chr3_1:76093574-76093593 Msa0376070:intron 35.0%
AGTATCCAAACTCTCAATAG+TGG + chr3_1:76093624-76093643 None:intergenic 35.0%
! GTCGAAAGGTCTTGTATAAT+TGG + chr3_1:76093658-76093677 None:intergenic 35.0%
! GACCTTTCGACAAAAAGTTT+TGG - chr3_1:76093667-76093686 Msa0376070:intron 35.0%
ATTTGTGTAACCGTTTCATG+TGG - chr3_1:76093691-76093710 Msa0376070:intron 35.0%
CAGACGATATTTACACTCAT+AGG - chr3_1:76093715-76093734 Msa0376070:five_prime_UTR 35.0%
TTTGATTGTGACTTGAGCAA+TGG - chr3_1:76093882-76093901 Msa0376070:five_prime_UTR 35.0%
! GTGTATTTTATTGGGTGGCA+AGG - chr3_1:76087233-76087252 Msa0376070:three_prime_UTR 40.0%
CAAGGCAACATCAACATCAA+GGG - chr3_1:76087251-76087270 Msa0376070:three_prime_UTR 40.0%
AAGGCAACATCAACATCAAG+GGG - chr3_1:76087252-76087271 Msa0376070:three_prime_UTR 40.0%
! GCTTCTTCTGGGAACAAAAA+TGG + chr3_1:76087368-76087387 None:intergenic 40.0%
GTTTATTGAGCGCAACTACT+AGG + chr3_1:76087527-76087546 None:intergenic 40.0%
AAACAAGCCACCAGAAAAAG+GGG + chr3_1:76087871-76087890 None:intergenic 40.0%
CAAAACAAGCCACCAGAAAA+AGG + chr3_1:76087873-76087892 None:intergenic 40.0%
! TGACAAAGAGTACAGAACAC+AGG + chr3_1:76087932-76087951 None:intergenic 40.0%
TGAGCTTATGTCTAAGCGAA+AGG - chr3_1:76088160-76088179 Msa0376070:three_prime_UTR 40.0%
GCATTCCAAACCTCTTTCTA+CGG + chr3_1:76088304-76088323 None:intergenic 40.0%
! TTTGGAATGCCAGAAGACTA+TGG - chr3_1:76088314-76088333 Msa0376070:three_prime_UTR 40.0%
AATGCCAGAAGACTATGGAT+GGG - chr3_1:76088319-76088338 Msa0376070:three_prime_UTR 40.0%
! TAACAGGAATGGTTTGGAGA+AGG - chr3_1:76088350-76088369 Msa0376070:three_prime_UTR 40.0%
AACAACGGTAGAGTGACAAT+TGG + chr3_1:76088427-76088446 None:intergenic 40.0%
TTGTCACTCTACCGTTGTTT+CGG - chr3_1:76088428-76088447 Msa0376070:three_prime_UTR 40.0%
CATGGAGAAGGATGAATATG+GGG - chr3_1:76088814-76088833 Msa0376070:intron 40.0%
ATGGAGAAGGATGAATATGG+GGG - chr3_1:76088815-76088834 Msa0376070:intron 40.0%
! CTTGGTACAGTGACTTTTCT+TGG + chr3_1:76089085-76089104 None:intergenic 40.0%
AGAAAAGTCACTGTACCAAG+AGG - chr3_1:76089085-76089104 Msa0376070:intron 40.0%
!!! AGGTCTTGGTTTTTGAGGTA+TGG - chr3_1:76089105-76089124 Msa0376070:intron 40.0%
GGGAAAGTTCTTGTACTTGA+TGG - chr3_1:76089216-76089235 Msa0376070:intron 40.0%
AAAGGATGAATGTGCTTACC+AGG - chr3_1:76089257-76089276 Msa0376070:intron 40.0%
!! GACTTTACATTTTTGGGGGA+CGG + chr3_1:76089315-76089334 None:intergenic 40.0%
AATAGCTGGCAAAAATGGGT+GGG + chr3_1:76090083-76090102 None:intergenic 40.0%
TTTCTTAAACGTGCACCTGA+AGG - chr3_1:76090106-76090125 Msa0376070:intron 40.0%
TTCTTAAACGTGCACCTGAA+GGG - chr3_1:76090107-76090126 Msa0376070:intron 40.0%
AGATTGAGATACAAGGGTTG+GGG + chr3_1:76090399-76090418 None:intergenic 40.0%
TTGAAGGAGTTTGAAAGAGG+AGG - chr3_1:76090716-76090735 Msa0376070:intron 40.0%
!! CATATTGTTTTGTTGGCTGG+TGG - chr3_1:76091009-76091028 Msa0376070:CDS 40.0%
TGGTTTCTCTACAAGTTCCT+GGG + chr3_1:76091290-76091309 None:intergenic 40.0%
ATGGTTTCTCTACAAGTTCC+TGG + chr3_1:76091291-76091310 None:intergenic 40.0%
CGGTGGAGTTCTTTGTAATA+TGG - chr3_1:76091342-76091361 Msa0376070:CDS 40.0%
! TGGAGAGCATGTCTTGAATA+AGG + chr3_1:76091393-76091412 None:intergenic 40.0%
CAAGTGTTCCAACATATCCA+AGG - chr3_1:76091455-76091474 Msa0376070:intron 40.0%
GTGGGATCAACTTTATCATG+AGG + chr3_1:76091635-76091654 None:intergenic 40.0%
! GATAAAGTTGATCCCACTGA+TGG - chr3_1:76091638-76091657 Msa0376070:intron 40.0%
TGCAACGTGACAAACCAAAA+AGG + chr3_1:76091855-76091874 None:intergenic 40.0%
ATGAGTGTGCTTAAAGGTTG+TGG - chr3_1:76091874-76091893 Msa0376070:CDS 40.0%
CAAAGTGAATCCTCTCAAGA+AGG + chr3_1:76091915-76091934 None:intergenic 40.0%
! ACTTGCCTAGTTTGGCATTT+TGG - chr3_1:76091975-76091994 Msa0376070:intron 40.0%
CTGTTCCAAAATGCCAAACT+AGG + chr3_1:76091983-76092002 None:intergenic 40.0%
!!! GGCATTTTGGAACAGTATAG+GGG - chr3_1:76091988-76092007 Msa0376070:intron 40.0%
ATTCCTTTCTTGGTATGCAG+TGG - chr3_1:76092101-76092120 Msa0376070:intron 40.0%
GTTTCTTCTATGCTCAACAG+AGG - chr3_1:76092133-76092152 Msa0376070:intron 40.0%
TTCTTCTATGCTCAACAGAG+GGG - chr3_1:76092135-76092154 Msa0376070:intron 40.0%
GGGTTCACAAAATCAACATG+CGG + chr3_1:76092161-76092180 None:intergenic 40.0%
!! TAGAAGGTGCTGATAAGCAT+CGG - chr3_1:76092201-76092220 Msa0376070:intron 40.0%
!! ATAAGCATCGGAGGAATCTT+AGG - chr3_1:76092213-76092232 Msa0376070:intron 40.0%
GTAAGATCTTTCTTGCATGC+AGG + chr3_1:76092355-76092374 None:intergenic 40.0%
ACCTCATTCTTCAGAAATGC+AGG + chr3_1:76092420-76092439 None:intergenic 40.0%
! CATTTCTGAAGAATGAGGTG+AGG - chr3_1:76092421-76092440 Msa0376070:intron 40.0%
GTATTGTACCACTAGTCATC+TGG - chr3_1:76092473-76092492 Msa0376070:intron 40.0%
ATTGTACCACTAGTCATCTG+GGG - chr3_1:76092475-76092494 Msa0376070:intron 40.0%
ATATTGCCCAGAGTTCAACA+AGG + chr3_1:76092579-76092598 None:intergenic 40.0%
GAATCTGTAATGTGGGATAG+TGG - chr3_1:76092761-76092780 Msa0376070:CDS 40.0%
TTTGCGGTGTTTATTACCGT+TGG - chr3_1:76092810-76092829 Msa0376070:CDS 40.0%
GTTGGTACAAACTCTTGCTT+TGG - chr3_1:76092828-76092847 Msa0376070:CDS 40.0%
TGGTACAAACTCTTGCTTTG+GGG - chr3_1:76092830-76092849 Msa0376070:CDS 40.0%
TGTATGGGACTCCAATGATT+TGG - chr3_1:76093148-76093167 Msa0376070:intron 40.0%
AAGTCAGAAGTTGCAGGAAA+AGG - chr3_1:76093580-76093599 Msa0376070:intron 40.0%
CAAAGCCACTATTGAGAGTT+TGG - chr3_1:76093616-76093635 Msa0376070:intron 40.0%
TATCGTCTGTCCACATGAAA+CGG + chr3_1:76093704-76093723 None:intergenic 40.0%
TGTGAAACTTAATGTGGACG+AGG - chr3_1:76093754-76093773 Msa0376070:five_prime_UTR 40.0%
AAAACTCTTTCAACAACCCG+AGG - chr3_1:76093780-76093799 Msa0376070:five_prime_UTR 40.0%
! GCCGGTTGTGATTAGTTAAT+TGG - chr3_1:76093806-76093825 Msa0376070:five_prime_UTR 40.0%
ATTGTGACTTGAGCAATGGT+AGG - chr3_1:76093886-76093905 Msa0376070:five_prime_UTR 40.0%
GCAAGGCAACATCAACATCA+AGG - chr3_1:76087250-76087269 Msa0376070:three_prime_UTR 45.0%
AGGCAACATCAACATCAAGG+GGG - chr3_1:76087253-76087272 Msa0376070:three_prime_UTR 45.0%
!! GGGTGTTGTTGATAGAAACG+CGG + chr3_1:76087416-76087435 None:intergenic 45.0%
TCTGGTGTGAATGTCAGTGA+GGG + chr3_1:76087436-76087455 None:intergenic 45.0%
ACAGAGAGAAGAGGAGTGAA+GGG + chr3_1:76087470-76087489 None:intergenic 45.0%
AACAGAGAGAAGAGGAGTGA+AGG + chr3_1:76087471-76087490 None:intergenic 45.0%
! ATTTTCCCCCCTTTTTCTGG+TGG - chr3_1:76087861-76087880 Msa0376070:three_prime_UTR 45.0%
AACAAGCCACCAGAAAAAGG+GGG + chr3_1:76087870-76087889 None:intergenic 45.0%
ACTGGAGCCAGTGAAGAAAA+GGG - chr3_1:76088262-76088281 Msa0376070:three_prime_UTR 45.0%
GAATGCCAGAAGACTATGGA+TGG - chr3_1:76088318-76088337 Msa0376070:three_prime_UTR 45.0%
! TGTCACTCTACCGTTGTTTC+GGG - chr3_1:76088429-76088448 Msa0376070:three_prime_UTR 45.0%
! TCAGCATCTCAAACTTGCTC+TGG - chr3_1:76088459-76088478 Msa0376070:three_prime_UTR 45.0%
TTGATACAACCGAGCCTTCA+TGG - chr3_1:76088796-76088815 Msa0376070:intron 45.0%
AGAAGGATGAATATGGGGGT+GGG - chr3_1:76088819-76088838 Msa0376070:intron 45.0%
GTGTATATGACGGTTGCTGA+TGG - chr3_1:76088999-76089018 Msa0376070:CDS 45.0%
! ATGACGGTTGCTGATGGTTT+TGG - chr3_1:76089005-76089024 Msa0376070:CDS 45.0%
CCTCAAAAACCAAGACCTCT+TGG + chr3_1:76089103-76089122 None:intergenic 45.0%
!! CCAAGAGGTCTTGGTTTTTG+AGG - chr3_1:76089100-76089119 Msa0376070:intron 45.0%
!! TACATTTTTGGGGGACGGAA+TGG + chr3_1:76089310-76089329 None:intergenic 45.0%
!!! CAGGTTTTAGTTGTTGGTGG+TGG - chr3_1:76089714-76089733 Msa0376070:CDS 45.0%
!! TTAGTTGTTGGTGGTGGAGA+TGG - chr3_1:76089720-76089739 Msa0376070:CDS 45.0%
TCAAACCCAACAGCTAACTC+TGG + chr3_1:76089915-76089934 None:intergenic 45.0%
! GTACACTTGCATGTTGGTGA+TGG - chr3_1:76089945-76089964 Msa0376070:intron 45.0%
CAATAGCTGGCAAAAATGGG+TGG + chr3_1:76090084-76090103 None:intergenic 45.0%
!! TGTTGATTCCTCAGATCCTG+TGG - chr3_1:76090147-76090166 Msa0376070:intron 45.0%
! GTTGATTCCTCAGATCCTGT+GGG - chr3_1:76090148-76090167 Msa0376070:intron 45.0%
TGGGCAAATGTTAGCAGTGT+TGG + chr3_1:76090773-76090792 None:intergenic 45.0%
GGAAAATCGGAGCAAAACGA+AGG + chr3_1:76091103-76091122 None:intergenic 45.0%
TTGTAATTTAGGTCCTGCCC+AGG - chr3_1:76091270-76091289 Msa0376070:intron 45.0%
! GATTATGGTTGGTGTGTTGC+TGG - chr3_1:76091694-76091713 Msa0376070:intron 45.0%
!! GCAGTTGATCCTAGCCTTTT+TGG - chr3_1:76091838-76091857 Msa0376070:CDS 45.0%
CGTGACAAACCAAAAAGGCT+AGG + chr3_1:76091850-76091869 None:intergenic 45.0%
CGTTGCATGAGTGTGCTTAA+AGG - chr3_1:76091868-76091887 Msa0376070:CDS 45.0%
GTGTGCTTAAAGGTTGTGGT+AGG - chr3_1:76091878-76091897 Msa0376070:CDS 45.0%
GTTTAGTAACTGTCAGGGCA+CGG + chr3_1:76092025-76092044 None:intergenic 45.0%
ACACCACTGCATACCAAGAA+AGG + chr3_1:76092107-76092126 None:intergenic 45.0%
TTGGTATGCAGTGGTGTGAT+AGG - chr3_1:76092110-76092129 Msa0376070:intron 45.0%
TGGTATGCAGTGGTGTGATA+GGG - chr3_1:76092111-76092130 Msa0376070:intron 45.0%
! GCCTGCATTTCTGAAGAATG+AGG - chr3_1:76092416-76092435 Msa0376070:intron 45.0%
! CAAGCAAGCATTGCTACTGA+CGG + chr3_1:76092452-76092471 None:intergenic 45.0%
CTATTTCCCCAGATGACTAG+TGG + chr3_1:76092484-76092503 None:intergenic 45.0%
TTGTGGGAGAAATAGGTACC+AGG - chr3_1:76092508-76092527 Msa0376070:intron 45.0%
! AATGGGTTCACAGACGGAAT+TGG + chr3_1:76092552-76092571 None:intergenic 45.0%
! GGCTTAAATGGGTTCACAGA+CGG + chr3_1:76092558-76092577 None:intergenic 45.0%
AGTAGCAGACGAGTAAGCAA+CGG - chr3_1:76092996-76093015 Msa0376070:intron 45.0%
TATAGGCCGCACCAAATCAT+TGG + chr3_1:76093162-76093181 None:intergenic 45.0%
! ATAGTGGCTTTGCATGGCAA+CGG + chr3_1:76093608-76093627 None:intergenic 45.0%
! CTCTCAATAGTGGCTTTGCA+TGG + chr3_1:76093614-76093633 None:intergenic 45.0%
!! GTATTAAAAATATTAAATTA+AGG + chr3_1:76087738-76087757 None:intergenic 5.0%
!! TATAAAAAAGTTAAAAATTT+AGG - chr3_1:76091816-76091835 Msa0376070:intron 5.0%
GTCTGGTGTGAATGTCAGTG+AGG + chr3_1:76087437-76087456 None:intergenic 50.0%
CACTGACATTCACACCAGAC+AGG - chr3_1:76087437-76087456 Msa0376070:three_prime_UTR 50.0%
GAGCGCAACTACTAGGGTTT+AGG + chr3_1:76087520-76087539 None:intergenic 50.0%
ACAAGCCACCAGAAAAAGGG+GGG + chr3_1:76087869-76087888 None:intergenic 50.0%
GACTGGAGCCAGTGAAGAAA+AGG - chr3_1:76088261-76088280 Msa0376070:three_prime_UTR 50.0%
CCTTCCCATCCATAGTCTTC+TGG + chr3_1:76088326-76088345 None:intergenic 50.0%
CCAGAAGACTATGGATGGGA+AGG - chr3_1:76088323-76088342 Msa0376070:three_prime_UTR 50.0%
GGCGAGTAACAGGAATGGTT+TGG - chr3_1:76088344-76088363 Msa0376070:three_prime_UTR 50.0%
! ACAATTGGCCTCCAACTCAG+GGG + chr3_1:76088412-76088431 None:intergenic 50.0%
! GACAATTGGCCTCCAACTCA+GGG + chr3_1:76088413-76088432 None:intergenic 50.0%
! TGACAATTGGCCTCCAACTC+AGG + chr3_1:76088414-76088433 None:intergenic 50.0%
! GTCACTCTACCGTTGTTTCG+GGG - chr3_1:76088430-76088449 Msa0376070:three_prime_UTR 50.0%
TGAGAACCACCCCGAAACAA+CGG + chr3_1:76088442-76088461 None:intergenic 50.0%
TTCAACAACCCAATGTGGCC+AGG - chr3_1:76088611-76088630 Msa0376070:three_prime_UTR 50.0%
AACAGTCACCTGGCCACATT+GGG + chr3_1:76088622-76088641 None:intergenic 50.0%
TAACAGTCACCTGGCCACAT+TGG + chr3_1:76088623-76088642 None:intergenic 50.0%
CATCCTTCTCCATGAAGGCT+CGG + chr3_1:76088808-76088827 None:intergenic 50.0%
GAGAAGGATGAATATGGGGG+TGG - chr3_1:76088818-76088837 Msa0376070:intron 50.0%
GAAGGATGAATATGGGGGTG+GGG - chr3_1:76088820-76088839 Msa0376070:intron 50.0%
AAGGATGAATATGGGGGTGG+GGG - chr3_1:76088821-76088840 Msa0376070:intron 50.0%
GTCACTGTACCAAGAGGTCT+TGG - chr3_1:76089091-76089110 Msa0376070:intron 50.0%
GGAGATGAGCTATCATCTCC+TGG + chr3_1:76089278-76089297 None:intergenic 50.0%
GCAGACGGTGGAAACAGTAT+GGG + chr3_1:76089670-76089689 None:intergenic 50.0%
AGCAGACGGTGGAAACAGTA+TGG + chr3_1:76089671-76089690 None:intergenic 50.0%
!! TTGTTGGTGGTGGAGATGGT+GGG - chr3_1:76089724-76089743 Msa0376070:CDS 50.0%
!! TGGAGATGGTGGGGTTCTAA+GGG - chr3_1:76089734-76089753 Msa0376070:CDS 50.0%
CAATATGCTCCACAGAGCTG+TGG + chr3_1:76089770-76089789 None:intergenic 50.0%
CCAACATGCAAGTGTACACG+AGG + chr3_1:76089942-76089961 None:intergenic 50.0%
CCTCGTGTACACTTGCATGT+TGG - chr3_1:76089939-76089958 Msa0376070:intron 50.0%
TTAAACGTGCACCTGAAGGG+AGG - chr3_1:76090110-76090129 Msa0376070:intron 50.0%
TTACTCACCCACAGGATCTG+AGG + chr3_1:76090158-76090177 None:intergenic 50.0%
TTCTCTACAAGTTCCTGGGC+AGG + chr3_1:76091286-76091305 None:intergenic 50.0%
! TCTAAGGCATTAAGACCCGG+TGG - chr3_1:76091325-76091344 Msa0376070:intron 50.0%
!! AAGGTGCTGATAAGCATCGG+AGG - chr3_1:76092204-76092223 Msa0376070:intron 50.0%
! GTAATTTGGGATGCAGGGTG+TGG - chr3_1:76092665-76092684 Msa0376070:intron 50.0%
!! GGCCGAGTTGGATGAGATTT+TGG - chr3_1:76092782-76092801 Msa0376070:CDS 50.0%
!! GGGACTCCAATGATTTGGTG+CGG - chr3_1:76093153-76093172 Msa0376070:intron 50.0%
!! TAATCACAACCGGCTAGCCT+CGG + chr3_1:76093800-76093819 None:intergenic 50.0%
TGAAGGGAGAGAGACCTGTC+TGG + chr3_1:76087454-76087473 None:intergenic 55.0%
GGACGCCGTAGAAAGAGGTT+TGG - chr3_1:76088296-76088315 Msa0376070:three_prime_UTR 55.0%
TGGATGGGAAGGCGAGTAAC+AGG - chr3_1:76088334-76088353 Msa0376070:three_prime_UTR 55.0%
GGGAAGGCGAGTAACAGGAA+TGG - chr3_1:76088339-76088358 Msa0376070:three_prime_UTR 55.0%
! ACTCTACCGTTGTTTCGGGG+TGG - chr3_1:76088433-76088452 Msa0376070:three_prime_UTR 55.0%
CAACCGAGCCTTCATGGAGA+AGG - chr3_1:76088802-76088821 Msa0376070:intron 55.0%
ATGAATATGGGGGTGGGGGA+AGG - chr3_1:76088825-76088844 Msa0376070:intron 55.0%
!! GTTGTTGGTGGTGGAGATGG+TGG - chr3_1:76089723-76089742 Msa0376070:CDS 55.0%
!! TGTTGGTGGTGGAGATGGTG+GGG - chr3_1:76089725-76089744 Msa0376070:CDS 55.0%
!! GTGGAGATGGTGGGGTTCTA+AGG - chr3_1:76089733-76089752 Msa0376070:CDS 55.0%
TATGCTCCACAGAGCTGTGG+CGG + chr3_1:76089767-76089786 None:intergenic 55.0%
! ATGTGGGATAGTGGCCGAGT+TGG - chr3_1:76092770-76092789 Msa0376070:CDS 55.0%
!! GGGCTTTGAGCTAGTGACCA+TGG - chr3_1:76092850-76092869 Msa0376070:exon 55.0%
TTCAACAACCCGAGGCTAGC+CGG - chr3_1:76093788-76093807 Msa0376070:five_prime_UTR 55.0%
!! AATCACAACCGGCTAGCCTC+GGG + chr3_1:76093799-76093818 None:intergenic 55.0%
ATGGGGGACGCCGTAGAAAG+AGG - chr3_1:76088291-76088310 Msa0376070:three_prime_UTR 60.0%
CAACTCAGGGGCTGAAGCCA+TGG + chr3_1:76088400-76088419 None:intergenic 60.0%
CATGGCTTCAGCCCCTGAGT+TGG - chr3_1:76088398-76088417 Msa0376070:three_prime_UTR 60.0%
GGGACGGAATGGAACAGAGG+GGG + chr3_1:76089299-76089318 None:intergenic 60.0%
GGGGACGGAATGGAACAGAG+GGG + chr3_1:76089300-76089319 None:intergenic 60.0%
GGGGGACGGAATGGAACAGA+GGG + chr3_1:76089301-76089320 None:intergenic 60.0%
TGGGGGACGGAATGGAACAG+AGG + chr3_1:76089302-76089321 None:intergenic 60.0%
AGTATCCCGCCACAGCTCTG+TGG - chr3_1:76089758-76089777 Msa0376070:CDS 60.0%
ATGCTCCACAGAGCTGTGGC+GGG + chr3_1:76089766-76089785 None:intergenic 60.0%
ACGGCGTCATACCTCCCTTC+AGG + chr3_1:76090124-76090143 None:intergenic 60.0%
! GGCTTCAGCCCCTGAGTTGG+AGG - chr3_1:76088401-76088420 Msa0376070:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76087214 76093940 76087214 ID=Msa0376070;Name=Msa0376070
chr3_1 mRNA 76087214 76093940 76087214 ID=Msa0376070-mRNA-1;Parent=Msa0376070;Name=Msa0376070-mRNA-1;_AED=0.09;_eAED=0.09;_QI=276|1|1|1|0.8|0.72|11|1482|358
chr3_1 exon 76087214 76088761 76087214 ID=Msa0376070-mRNA-1:exon:17980;Parent=Msa0376070-mRNA-1
chr3_1 exon 76088904 76089033 76088904 ID=Msa0376070-mRNA-1:exon:17979;Parent=Msa0376070-mRNA-1
chr3_1 exon 76089678 76089873 76089678 ID=Msa0376070-mRNA-1:exon:17978;Parent=Msa0376070-mRNA-1
chr3_1 exon 76090985 76091056 76090985 ID=Msa0376070-mRNA-1:exon:17977;Parent=Msa0376070-mRNA-1
chr3_1 exon 76091188 76091260 76091188 ID=Msa0376070-mRNA-1:exon:17976;Parent=Msa0376070-mRNA-1
chr3_1 exon 76091333 76091437 76091333 ID=Msa0376070-mRNA-1:exon:17975;Parent=Msa0376070-mRNA-1
chr3_1 exon 76091828 76091950 76091828 ID=Msa0376070-mRNA-1:exon:17974;Parent=Msa0376070-mRNA-1
chr3_1 exon 76092033 76092109 76092033 ID=Msa0376070-mRNA-1:exon:17973;Parent=Msa0376070-mRNA-1
chr3_1 exon 76092522 76092566 76092522 ID=Msa0376070-mRNA-1:exon:17972;Parent=Msa0376070-mRNA-1
chr3_1 exon 76092674 76092894 76092674 ID=Msa0376070-mRNA-1:exon:17971;Parent=Msa0376070-mRNA-1
chr3_1 exon 76093696 76093940 76093696 ID=Msa0376070-mRNA-1:exon:17970;Parent=Msa0376070-mRNA-1
chr3_1 five_prime_UTR 76093696 76093940 76093696 ID=Msa0376070-mRNA-1:five_prime_utr;Parent=Msa0376070-mRNA-1
chr3_1 five_prime_UTR 76092864 76092894 76092864 ID=Msa0376070-mRNA-1:five_prime_utr;Parent=Msa0376070-mRNA-1
chr3_1 CDS 76092674 76092863 76092674 ID=Msa0376070-mRNA-1:cds;Parent=Msa0376070-mRNA-1
chr3_1 CDS 76092522 76092566 76092522 ID=Msa0376070-mRNA-1:cds;Parent=Msa0376070-mRNA-1
chr3_1 CDS 76092033 76092109 76092033 ID=Msa0376070-mRNA-1:cds;Parent=Msa0376070-mRNA-1
chr3_1 CDS 76091828 76091950 76091828 ID=Msa0376070-mRNA-1:cds;Parent=Msa0376070-mRNA-1
chr3_1 CDS 76091333 76091437 76091333 ID=Msa0376070-mRNA-1:cds;Parent=Msa0376070-mRNA-1
chr3_1 CDS 76091188 76091260 76091188 ID=Msa0376070-mRNA-1:cds;Parent=Msa0376070-mRNA-1
chr3_1 CDS 76090985 76091056 76090985 ID=Msa0376070-mRNA-1:cds;Parent=Msa0376070-mRNA-1
chr3_1 CDS 76089678 76089873 76089678 ID=Msa0376070-mRNA-1:cds;Parent=Msa0376070-mRNA-1
chr3_1 CDS 76088904 76089033 76088904 ID=Msa0376070-mRNA-1:cds;Parent=Msa0376070-mRNA-1
chr3_1 CDS 76088696 76088761 76088696 ID=Msa0376070-mRNA-1:cds;Parent=Msa0376070-mRNA-1
chr3_1 three_prime_UTR 76087214 76088695 76087214 ID=Msa0376070-mRNA-1:three_prime_utr;Parent=Msa0376070-mRNA-1
Gene Sequence

>Msa0376070

ATGGGGGACGCCGTAGAAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGCGAGTAACAGGAATGGTTTGGAGAAGGAGATTCCTTCATGTTGTTTGAAAGCCATGGCTTCAGCCCCTGAGTTGGAGGCCAATTGTCACTCTACCGTTGTTTCGGGGTGGTTCTCAGCATCTCAAACTTGCTCTGAAAAATCAGAGGAAGTTCTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAGAAGAAATTGTTCCAAGAAAAGTCACTGTACCAAGAGGTCTTGGTTTTTGAGTCATTAACATATGGGAAAGTTCTTGTACTTGATGGGATTGTTCAGTTGACTGAAAAGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTCCCCCTCTGTTCCATTCCGTCCCCCAAAAATGTTTTAGTTGTTGGTGGTGGAGATGGTGGGGTTCTAAGGGAAGTATCCCGCCACAGCTCTGTGGAGCATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCCAGAGTTAGCTGTTGGGTTTGACGATCCTCGTGTACACTTGCATGTTGGTGATGCTATTGAATTTCTTAAACGTGCACCTGAAGGGAGGTATGACGCCGTAATTGTTGATTCCTCAGATCCTGTGGGTCCTGCCCAGGAACTTGTAGAGAAACCATTTTTTGAGACTATATCTAAGGCATTAAGACCCGGTGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATTCAAGACATGCTCTCCATTTGTCGAGAAACATTTAAAGGTTCTGTACATTATGCATGGGCAAGTGTTCCAACATATCCAAGTGGTGTGATAGGGTTTCTTCTATGCTCAACAGAGGGGCCGCATGTTGATTTTGTGAACCCCATCAATCCCATTGAAAAGTTAGAAGGTGCTGATAAGCATCGGAGGAATCTTAGGTTCTATAACTCAGAGATACATACAGCGGCTTTTGCACTGCCTGCATTTCTGAAGAATGAGGTGAGGTTGCTCCGTCAGTAG
Protein sequence

>Msa0376070

MGDAVERGLECQKTMDGKASNRNGLEKEIPSCCLKAMASAPELEANCHSTVVSGWFSASQTCSEKSEEVLYFNNPMWPGEAHSIKVEKKLFQEKSLYQEVLVFESLTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKNVLVVGGGDGGVLREVSRHSSVEHIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDAIEFLKRAPEGRYDAVIVDSSDPVGPAQELVEKPFFETISKALRPGGVLCNMAESMWLHTHLIQDMLSICRETFKGSVHYAWASVPTYPSGVIGFLLCSTEGPHVDFVNPINPIEKLEGADKHRRNLRFYNSEIHTAAFALPAFLKNEVRLLRQ*