Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515270 | XP_003601987.1 | 99.608 | 510 | 2 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1052 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515270 | sp|Q9SSV4|INO1_NICPA | 93.137 | 510 | 35 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1001 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515270 | G7J4B5 | 99.608 | 510 | 2 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1052 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa0515270 | -0.876037 | 1.920165e-68 | -8.615850e-47 |
| Msa0023010 | Msa0515270 | -0.808736 | 2.674679e-50 | -8.615850e-47 |
| Msa0023040 | Msa0515270 | -0.804414 | 2.185296e-49 | -8.615850e-47 |
| Msa0023050 | Msa0515270 | -0.827825 | 1.262828e-54 | -8.615850e-47 |
| Msa0026680 | Msa0515270 | -0.806218 | 9.151967e-50 | -8.615850e-47 |
| Msa0070860 | Msa0515270 | -0.808150 | 3.567510e-50 | -8.615850e-47 |
| Msa0118790 | Msa0515270 | -0.808912 | 2.453031e-50 | -8.615850e-47 |
| Msa0140630 | Msa0515270 | -0.841244 | 5.343865e-58 | -8.615850e-47 |
| Msa0156370 | Msa0515270 | -0.888832 | 4.159289e-73 | -8.615850e-47 |
| Msa0162120 | Msa0515270 | -0.815005 | 1.153948e-51 | -8.615850e-47 |
| Msa0222310 | Msa0515270 | -0.801641 | 8.182906e-49 | -8.615850e-47 |
| Msa0376070 | Msa0515270 | 0.817160 | 3.809285e-52 | -8.615850e-47 |
| Msa0376230 | Msa0515270 | 0.821582 | 3.740776e-53 | -8.615850e-47 |
| Msa0381500 | Msa0515270 | -0.842291 | 2.828872e-58 | -8.615850e-47 |
| Msa0402210 | Msa0515270 | -0.843842 | 1.092533e-58 | -8.615850e-47 |
| Msa0415950 | Msa0515270 | 0.803710 | 3.061550e-49 | -8.615850e-47 |
| Msa0423130 | Msa0515270 | 0.871942 | 4.650750e-67 | -8.615850e-47 |
| Msa0424690 | Msa0515270 | 0.807753 | 4.333820e-50 | -8.615850e-47 |
| Msa0435980 | Msa0515270 | 0.815438 | 9.244929e-52 | -8.615850e-47 |
| Msa0469560 | Msa0515270 | 0.936113 | 2.916616e-97 | -8.615850e-47 |
| Msa0355140 | Msa0515270 | -0.833755 | 4.444355e-56 | -8.615850e-47 |
| Msa0483770 | Msa0515270 | -0.839096 | 1.943286e-57 | -8.615850e-47 |
| Msa0515270 | Msa0516070 | 0.827429 | 1.572057e-54 | -8.615850e-47 |
| Msa0515270 | Msa0519950 | -0.832687 | 8.198023e-56 | -8.615850e-47 |
| Msa0515270 | Msa0527690 | 0.813297 | 2.749043e-51 | -8.615850e-47 |
| Msa0515270 | Msa0550120 | -0.861845 | 7.703740e-64 | -8.615850e-47 |
| Msa0515270 | Msa0550150 | -0.811459 | 6.926752e-51 | -8.615850e-47 |
| Msa0515270 | Msa0578470 | -0.801131 | 1.040520e-48 | -8.615850e-47 |
| Msa0515270 | Msa0604010 | -0.812099 | 5.026606e-51 | -8.615850e-47 |
| Msa0515270 | Msa0605630 | -0.843786 | 1.131136e-58 | -8.615850e-47 |
| Msa0515270 | Msa0605650 | -0.809690 | 1.670625e-50 | -8.615850e-47 |
| Msa0515270 | Msa0646580 | -0.840876 | 6.674938e-58 | -8.615850e-47 |
| Msa0515270 | Msa0686210 | -0.836689 | 8.078016e-57 | -8.615850e-47 |
| Msa0515270 | Msa0692240 | 0.810791 | 9.671831e-51 | -8.615850e-47 |
| Msa0515270 | Msa0708930 | -0.822249 | 2.620052e-53 | -8.615850e-47 |
| Msa0515270 | Msa0724140 | 0.836823 | 7.463400e-57 | -8.615850e-47 |
| Msa0515270 | Msa0729090 | -0.803348 | 3.638406e-49 | -8.615850e-47 |
| Msa0515270 | Msa0741230 | -0.803482 | 3.413713e-49 | -8.615850e-47 |
| Msa0515270 | Msa0764680 | 0.845245 | 4.578786e-59 | -8.615850e-47 |
| Msa0515270 | Msa0795730 | -0.865996 | 3.935510e-65 | -8.615850e-47 |
| Msa0515270 | Msa0833470 | -0.847266 | 1.288994e-59 | -8.615850e-47 |
| Msa0515270 | Msa0844220 | 0.825127 | 5.552905e-54 | -8.615850e-47 |
| Msa0515270 | Msa0861860 | -0.810177 | 1.312104e-50 | -8.615850e-47 |
| Msa0515270 | Msa0867730 | -0.829548 | 4.841304e-55 | -8.615850e-47 |
| Msa0515270 | Msa0968610 | -0.845095 | 5.029590e-59 | -8.615850e-47 |
| Msa0515270 | Msa1113700 | 0.813060 | 3.098461e-51 | -8.615850e-47 |
| Msa0515270 | Msa1130820 | 0.810609 | 1.058585e-50 | -8.615850e-47 |
| Msa0515270 | Msa1172610 | 0.810724 | 9.998794e-51 | -8.615850e-47 |
| Msa0515270 | Msa1212190 | -0.820480 | 6.710181e-53 | -8.615850e-47 |
| Msa0515270 | Msa1212270 | -0.826226 | 3.046450e-54 | -8.615850e-47 |
| Msa0515270 | Msa1259910 | -0.824430 | 8.104653e-54 | -8.615850e-47 |
| Msa0515270 | Msa1384360 | 0.819914 | 9.042346e-53 | -8.615850e-47 |
| Msa0515270 | Msa1406670 | 0.803433 | 3.494681e-49 | -8.615850e-47 |
| Msa0515270 | Msa1448870 | 0.808301 | 3.313295e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515270 | MtrunA17_Chr3g0124321 | 99.608 | 510 | 2 | 0 | 1 | 510 | 1 | 510 | 0.0 | 1052 |
| Msa0515270 | MtrunA17_Chr8g0382621 | 91.373 | 510 | 44 | 0 | 1 | 510 | 1 | 510 | 0.0 | 985 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0515270 | AT2G22240.1 | 88.431 | 510 | 59 | 0 | 1 | 510 | 1 | 510 | 0.0 | 963 |
| Msa0515270 | AT5G10170.1 | 88.235 | 510 | 60 | 0 | 1 | 510 | 1 | 510 | 0.0 | 960 |
| Msa0515270 | AT4G39800.1 | 88.845 | 511 | 56 | 1 | 1 | 510 | 1 | 511 | 0.0 | 959 |
| Msa0515270 | AT2G22240.3 | 87.778 | 450 | 55 | 0 | 1 | 450 | 1 | 450 | 0.0 | 843 |
| Msa0515270 | AT2G22240.2 | 88.684 | 380 | 43 | 0 | 131 | 510 | 1 | 380 | 0.0 | 718 |
Find 152 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATATTCATGTCCCTAAAT+TGG | 0.139724 | 3_4:+66424716 | Msa0515270:CDS |
| TAGGATACTAACCCCAATTT+AGG | 0.157622 | 3_4:-66424729 | None:intergenic |
| ACATGCATTCAGGGAATTTA+AGG | 0.216220 | 3_4:+66425934 | Msa0515270:intron |
| CACCAAAACAGATTTCATTT+TGG | 0.237842 | 3_4:-66426326 | None:intergenic |
| TAGGGTAATGCTTGTGGGCT+GGG | 0.247084 | 3_4:+66424839 | Msa0515270:intron |
| GTGTTTATTGCTTTACCTTA+TGG | 0.256794 | 3_4:+66428230 | Msa0515270:three_prime_UTR |
| AGTCAAGGATCCAAAGTAAT+TGG | 0.258694 | 3_4:-66425036 | None:intergenic |
| TTTGGCTGCTCCTATTATCT+TGG | 0.260165 | 3_4:+66426916 | Msa0515270:CDS |
| GACCAAAATGAAATCTGTTT+TGG | 0.315009 | 3_4:+66426324 | Msa0515270:CDS |
| AGAACCAAGTCCAAGATAAT+AGG | 0.315065 | 3_4:-66426926 | None:intergenic |
| ACTTAATGTCTTTGATGATT+TGG | 0.316276 | 3_4:-66425826 | None:intergenic |
| GTTTGCCATTGCTTGTGTTA+TGG | 0.321854 | 3_4:+66426102 | Msa0515270:CDS |
| GGCTTGTTGAATCTTATCTT+TGG | 0.324221 | 3_4:-66425015 | None:intergenic |
| GATATTCATGTCCCTAAATT+GGG | 0.324625 | 3_4:+66424717 | Msa0515270:CDS |
| TTAGGGTAATGCTTGTGGGC+TGG | 0.326783 | 3_4:+66424838 | Msa0515270:intron |
| AAAAGGAAAATAAAATAAAA+AGG | 0.327687 | 3_4:-66428084 | None:intergenic |
| TGATCATGTTGTAGTCATTA+AGG | 0.330877 | 3_4:+66426698 | Msa0515270:CDS |
| CACATGTGAGGACTCCCTTT+TGG | 0.337114 | 3_4:+66426898 | Msa0515270:CDS |
| TGCTCCTATTATCTTGGACT+TGG | 0.337540 | 3_4:+66426922 | Msa0515270:CDS |
| AATCAAACAGTTGTTCTTGA+TGG | 0.339221 | 3_4:-66426275 | None:intergenic |
| CAATTTAGGGACATGAATAT+CGG | 0.345716 | 3_4:-66424715 | None:intergenic |
| GAATCCATGGTTCCACTTCC+TGG | 0.346613 | 3_4:+66425719 | Msa0515270:CDS |
| TTCTGTCCACAGCAGCAAAA+AGG | 0.352039 | 3_4:-66426051 | None:intergenic |
| GAGGCAAGACCAATATAATA+TGG | 0.363257 | 3_4:+66428262 | Msa0515270:three_prime_UTR |
| AGGATACTAACCCCAATTTA+GGG | 0.368499 | 3_4:-66424728 | None:intergenic |
| GGTTCTATACCATATTATAT+TGG | 0.377003 | 3_4:-66428271 | None:intergenic |
| CTGATGCCATGGCTAGGGCC+AGG | 0.381997 | 3_4:+66425654 | Msa0515270:CDS |
| ATTCAACAAGCCAATTACTT+TGG | 0.386610 | 3_4:+66425026 | Msa0515270:CDS |
| TCCTTGGAGCGGAAGGTTTG+TGG | 0.393131 | 3_4:-66426603 | None:intergenic |
| CCTTGGAGCGGAAGGTTTGT+GGG | 0.393231 | 3_4:-66426602 | None:intergenic |
| GTGGATTTCCTTGTAGGAGC+TGG | 0.403897 | 3_4:+66426346 | Msa0515270:CDS |
| TTATCTGACCAAGGCTCCTC+TGG | 0.410514 | 3_4:+66427777 | Msa0515270:CDS |
| GAGAATGTTCCTTTCATCAA+TGG | 0.416258 | 3_4:+66426124 | Msa0515270:CDS |
| TAACACAAGCAATGGCAAAC+AGG | 0.418453 | 3_4:-66426099 | None:intergenic |
| GTTGCTCTTGGAAATTTCCT+TGG | 0.419538 | 3_4:-66426619 | None:intergenic |
| AAACTAGAAAGTTCTAACTA+TGG | 0.420585 | 3_4:-66428035 | None:intergenic |
| GTCAAAGCAGCGAGCAATGC+TGG | 0.421080 | 3_4:+66427933 | Msa0515270:CDS |
| TCTAGGATCATGTTGTTCTC+TGG | 0.422099 | 3_4:-66427988 | None:intergenic |
| AGAAGAAGAAAGAAATGAAA+AGG | 0.428286 | 3_4:-66424492 | None:intergenic |
| ATCGTCAACAACGTTGCTCT+TGG | 0.428897 | 3_4:-66426631 | None:intergenic |
| GATTTCATTGCTGCTAATCA+AGG | 0.434233 | 3_4:+66425755 | Msa0515270:CDS |
| GAGCATGAATTTCCTCTCCT+TGG | 0.438687 | 3_4:-66425088 | None:intergenic |
| GAGCAACGTTGTTGACGATA+TGG | 0.445374 | 3_4:+66426635 | Msa0515270:CDS |
| AAGCCCTGCTCTAAAGTACT+TGG | 0.447659 | 3_4:-66428153 | None:intergenic |
| TTGTTGAATCTTATCTTTGG+TGG | 0.450721 | 3_4:-66425012 | None:intergenic |
| CCCTGCTTCACTTGTACTCT+AGG | 0.451998 | 3_4:-66428005 | None:intergenic |
| TGATTAGCAGCAATGAAATC+CGG | 0.452153 | 3_4:-66425752 | None:intergenic |
| ATCAAGAACAACTGTTTGAT+TGG | 0.452379 | 3_4:+66426277 | Msa0515270:CDS |
| TTTGTTAGGGTAATGCTTGT+GGG | 0.455984 | 3_4:+66424834 | Msa0515270:intron |
| TTGATTTGCAAAAGCAATTG+AGG | 0.457030 | 3_4:+66425687 | Msa0515270:CDS |
| AGATAATAGGAGCAGCCAAA+AGG | 0.457683 | 3_4:-66426913 | None:intergenic |
| GCTCCCAAGTACTTTAGAGC+AGG | 0.457698 | 3_4:+66428149 | Msa0515270:three_prime_UTR |
| AGGTACAGTAACTTAGTTGT+AGG | 0.460941 | 3_4:+66426007 | Msa0515270:CDS |
| TTAATGACTACAACATGATC+AGG | 0.467562 | 3_4:-66426696 | None:intergenic |
| AGGGTAATGCTTGTGGGCTG+GGG | 0.467936 | 3_4:+66424840 | Msa0515270:intron |
| TAACTGAGGATGGTAGCAAC+GGG | 0.472877 | 3_4:-66427757 | None:intergenic |
| TCCTAGAGTACAAGTGAAGC+AGG | 0.475562 | 3_4:+66428004 | Msa0515270:exon |
| GATTCAGTGTACTTAACATT+GGG | 0.477319 | 3_4:-66424582 | None:intergenic |
| GGTGGTTTCGTAATTGTAAA+CGG | 0.478186 | 3_4:-66424616 | None:intergenic |
| TTTATCTATTTGTGCTCAGT+TGG | 0.479965 | 3_4:+66428208 | Msa0515270:three_prime_UTR |
| GTAATGCTTGTGGGCTGGGG+TGG | 0.481711 | 3_4:+66424843 | Msa0515270:CDS |
| ATTATACGTGCAGGTTCCAC+CGG | 0.482882 | 3_4:+66427888 | Msa0515270:intron |
| GGAACCATGGATTCCATGTA+AGG | 0.483038 | 3_4:-66425710 | None:intergenic |
| GATAATAGGAGCAGCCAAAA+GGG | 0.486125 | 3_4:-66426912 | None:intergenic |
| ACGTGCAAATAACGTTATCA+AGG | 0.491091 | 3_4:+66425781 | Msa0515270:CDS |
| AGGAAGCAAACAAAGTGGAC+AGG | 0.493386 | 3_4:+66425954 | Msa0515270:CDS |
| TGATGCCATGGCTAGGGCCA+GGG | 0.493673 | 3_4:+66425655 | Msa0515270:CDS |
| AAGAGGAAAGAAAAGAATGA+AGG | 0.500444 | 3_4:-66424522 | None:intergenic |
| GGAAATTTCCTTGGAGCGGA+AGG | 0.501533 | 3_4:-66426610 | None:intergenic |
| CAAGCTTCAGCTATTCGAGT+TGG | 0.504429 | 3_4:+66425059 | Msa0515270:CDS |
| CCTTGTAGGAGCTGGTATCA+AGG | 0.505836 | 3_4:+66426354 | Msa0515270:CDS |
| AAAGCAATTGAGGCCTTACA+TGG | 0.505909 | 3_4:+66425697 | Msa0515270:CDS |
| ATAGTGAGTTACAATCATCT+TGG | 0.506560 | 3_4:+66426552 | Msa0515270:CDS |
| AGCAATAACACCACCGGTAA+GGG | 0.507926 | 3_4:-66424880 | None:intergenic |
| CTCTTGCTGTCACCAACATA+AGG | 0.508453 | 3_4:-66426812 | None:intergenic |
| ATTTGTTAGGGTAATGCTTG+TGG | 0.509057 | 3_4:+66424833 | Msa0515270:intron |
| TTTCAAGAGCCTTCTTCCAA+TGG | 0.511249 | 3_4:+66425112 | Msa0515270:CDS |
| CATGAGAGCTTGTGTTGGAT+TGG | 0.511914 | 3_4:+66427963 | Msa0515270:CDS |
| AACAACGGTTCAACCCTTAC+CGG | 0.512660 | 3_4:+66424867 | Msa0515270:CDS |
| CTTGTTCATGAAAATCGTAA+TGG | 0.514368 | 3_4:+66424642 | Msa0515270:CDS |
| TGCCTCTTAAAACTACCATA+AGG | 0.515668 | 3_4:-66428245 | None:intergenic |
| AGATATTTACCATTGGAAGA+AGG | 0.517540 | 3_4:-66425121 | None:intergenic |
| TTGCAGTATGTGCCTTATGT+TGG | 0.518481 | 3_4:+66426800 | Msa0515270:intron |
| AGATTCAGTGTACTTAACAT+TGG | 0.521108 | 3_4:-66424583 | None:intergenic |
| TTTGACAATGCATTCACCAC+TGG | 0.524218 | 3_4:-66427916 | None:intergenic |
| CCTTGATACCAGCTCCTACA+AGG | 0.526501 | 3_4:-66426354 | None:intergenic |
| TTAACGCACCAGAGGAGCCT+TGG | 0.528664 | 3_4:-66427785 | None:intergenic |
| GATGGTAGCAACGGGGTGAA+AGG | 0.529485 | 3_4:-66427749 | None:intergenic |
| TAGCAATAACACCACCGGTA+AGG | 0.532037 | 3_4:-66424881 | None:intergenic |
| CTCCCAAGTACTTTAGAGCA+GGG | 0.534261 | 3_4:+66428150 | Msa0515270:three_prime_UTR |
| AATCATCTTGGAAACAATGA+TGG | 0.537294 | 3_4:+66426564 | Msa0515270:CDS |
| ACATGATCAGGATGTTCGCC+AGG | 0.540181 | 3_4:-66426684 | None:intergenic |
| GCATTCACCACTGGTGTGCC+CGG | 0.540361 | 3_4:-66427907 | None:intergenic |
| TGGACAGGGTTGTTGTACTC+TGG | 0.548164 | 3_4:+66425969 | Msa0515270:CDS |
| CCTTGCTGATGCCATGGCTA+GGG | 0.551502 | 3_4:+66425649 | Msa0515270:CDS |
| GAGGCCTTACATGGAATCCA+TGG | 0.553960 | 3_4:+66425706 | Msa0515270:CDS |
| GAAAACATCAGCAAACCAAA+AGG | 0.554028 | 3_4:-66428101 | None:intergenic |
| ATTCGAGTTGGATCTTTCCA+AGG | 0.554359 | 3_4:+66425071 | Msa0515270:CDS |
| AACATCATGAGAGCTTGTGT+TGG | 0.560655 | 3_4:+66427958 | Msa0515270:CDS |
| CCCACAAACCTTCCGCTCCA+AGG | 0.565550 | 3_4:+66426602 | Msa0515270:CDS |
| AGTTGGATCTTTCCAAGGAG+AGG | 0.567879 | 3_4:+66425076 | Msa0515270:CDS |
| TGAGGACTTCCATTGATGAA+AGG | 0.570861 | 3_4:-66426133 | None:intergenic |
| ACCTTGCTGATGCCATGGCT+AGG | 0.571457 | 3_4:+66425648 | Msa0515270:CDS |
| GTTACTGTACCTCTCTGTGT+TGG | 0.574857 | 3_4:-66425996 | None:intergenic |
| CTTGGAGCGGAAGGTTTGTG+GGG | 0.577089 | 3_4:-66426601 | None:intergenic |
| CATGAACCTTGCTGATGCCA+TGG | 0.578935 | 3_4:+66425643 | Msa0515270:CDS |
| AACACAAGCAATGGCAAACA+GGG | 0.579935 | 3_4:-66426098 | None:intergenic |
| GGGTCATAGATACCAGGAAG+TGG | 0.581317 | 3_4:-66425731 | None:intergenic |
| TCAGTTTAAATCTGAAGCTG+AGG | 0.583789 | 3_4:+66426973 | Msa0515270:CDS |
| GCAATGGCAAACAGGGTGGA+AGG | 0.586236 | 3_4:-66426091 | None:intergenic |
| GATTAGCAGCAATGAAATCC+GGG | 0.589255 | 3_4:-66425751 | None:intergenic |
| ATTGGAAGAAGGCTCTTGAA+AGG | 0.589300 | 3_4:-66425110 | None:intergenic |
| ATCGTAATGGCACTTATCAG+TGG | 0.589528 | 3_4:+66424655 | Msa0515270:CDS |
| GTGGGCTGGGGTGGAAACAA+CGG | 0.593220 | 3_4:+66424852 | Msa0515270:CDS |
| TTGTAACTCACTATTGATGT+TGG | 0.597352 | 3_4:-66426543 | None:intergenic |
| ACTTCCTGGTATCTATGACC+CGG | 0.598671 | 3_4:+66425733 | Msa0515270:CDS |
| TGGTGACAGCAAGAGAGCTA+TGG | 0.602579 | 3_4:+66426820 | Msa0515270:CDS |
| ATAACTGAGGATGGTAGCAA+CGG | 0.602604 | 3_4:-66427758 | None:intergenic |
| ATTCTCCATAACACAAGCAA+TGG | 0.605875 | 3_4:-66426107 | None:intergenic |
| CCCTAGCCATGGCATCAGCA+AGG | 0.607382 | 3_4:-66425649 | None:intergenic |
| AGCCCTGCTCTAAAGTACTT+GGG | 0.608027 | 3_4:-66428152 | None:intergenic |
| AAGAACAACTGTTTGATTGG+TGG | 0.609331 | 3_4:+66426280 | Msa0515270:CDS |
| TTCGCCAGGTGCATAGAGGA+TGG | 0.609515 | 3_4:-66426670 | None:intergenic |
| AATGCCATCCTCTATGCACC+TGG | 0.609865 | 3_4:+66426666 | Msa0515270:CDS |
| ATATTCATGTCCCTAAATTG+GGG | 0.612827 | 3_4:+66424718 | Msa0515270:CDS |
| CCTAGAGTACAAGTGAAGCA+GGG | 0.613737 | 3_4:+66428005 | Msa0515270:exon |
| GGAAGGTTTGTGGGGCTGAG+AGG | 0.615482 | 3_4:-66426593 | None:intergenic |
| GGTTCCACCGGGCACACCAG+TGG | 0.615777 | 3_4:+66427900 | Msa0515270:intron |
| CGTGCAAATAACGTTATCAA+GGG | 0.615803 | 3_4:+66425782 | Msa0515270:CDS |
| TTATACGTGCAGGTTCCACC+GGG | 0.621923 | 3_4:+66427889 | Msa0515270:intron |
| CTTGGTCAGATAACTGAGGA+TGG | 0.622462 | 3_4:-66427767 | None:intergenic |
| CCTGGAACAAAAGTGTTCTG+AGG | 0.628658 | 3_4:-66426151 | None:intergenic |
| AAATCCGGGTCATAGATACC+AGG | 0.633037 | 3_4:-66425737 | None:intergenic |
| TCTTGGAAATTTCCTTGGAG+CGG | 0.633995 | 3_4:-66426614 | None:intergenic |
| AATAGCTGAAGCTTGAGTCA+AGG | 0.634507 | 3_4:-66425051 | None:intergenic |
| TTCACCACTGGTGTGCCCGG+TGG | 0.637974 | 3_4:-66427904 | None:intergenic |
| GGAAGCAAACAAAGTGGACA+GGG | 0.639443 | 3_4:+66425955 | Msa0515270:CDS |
| GATACCAGGAAGTGGAACCA+TGG | 0.640394 | 3_4:-66425723 | None:intergenic |
| GGTGGTGATGATTTCAAGAG+TGG | 0.641949 | 3_4:+66426298 | Msa0515270:CDS |
| CTAGAGTACAAGTGAAGCAG+GGG | 0.649378 | 3_4:+66428006 | Msa0515270:exon |
| TCTGTTAGCAATAACACCAC+CGG | 0.649419 | 3_4:-66424886 | None:intergenic |
| AGCTATGGATGAGTACACTT+CGG | 0.651582 | 3_4:+66426835 | Msa0515270:CDS |
| ATTTAAGGAAGCAAACAAAG+TGG | 0.652703 | 3_4:+66425949 | Msa0515270:CDS |
| CATCCTCAGTTATCTGACCA+AGG | 0.657948 | 3_4:+66427768 | Msa0515270:CDS |
| AACGGTTCAACCCTTACCGG+TGG | 0.661685 | 3_4:+66424870 | Msa0515270:CDS |
| GATGTTCGCCAGGTGCATAG+AGG | 0.676178 | 3_4:-66426674 | None:intergenic |
| ACAAGCAATGGCAAACAGGG+TGG | 0.679241 | 3_4:-66426095 | None:intergenic |
| TCTGGACTGCCAACACAGAG+AGG | 0.697710 | 3_4:+66425987 | Msa0515270:CDS |
| TGTAGGACTCAATGACACCA+TGG | 0.702021 | 3_4:+66426024 | Msa0515270:CDS |
| GAGCCTTGGTCAGATAACTG+AGG | 0.725753 | 3_4:-66427771 | None:intergenic |
| AACTGAGGATGGTAGCAACG+GGG | 0.750164 | 3_4:-66427756 | None:intergenic |
| TGTGTTGCACAACACATGTG+AGG | 0.753320 | 3_4:+66426886 | Msa0515270:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTTATTTATTATTTAT+TGG | + | chr3_4:66424806-66424825 | Msa0515270:intron | 0.0% |
| !!! | TTTATTTTTTAAAAATAAAA+TGG | + | chr3_4:66425509-66425528 | Msa0515270:intron | 0.0% |
| !!! | TTTTTATTAATTGTGATTAA+TGG | + | chr3_4:66424936-66424955 | Msa0515270:intron | 10.0% |
| !!! | TTTTATTAATTGTGATTAAT+GGG | + | chr3_4:66424937-66424956 | Msa0515270:intron | 10.0% |
| !! | AAAAATCAATTAAAACAAAA+GGG | - | chr3_4:66425154-66425173 | None:intergenic | 10.0% |
| !! | AAAAAATCAATTAAAACAAA+AGG | - | chr3_4:66425155-66425174 | None:intergenic | 10.0% |
| !! | AAAAGGAAAATAAAATAAAA+AGG | - | chr3_4:66428087-66428106 | None:intergenic | 10.0% |
| !!! | TTTTTATTTTATTTTCCTTT+TGG | + | chr3_4:66428086-66428105 | Msa0515270:three_prime_UTR | 10.0% |
| !!! | AATTCATATTTAACAGTTTT+AGG | - | chr3_4:66424690-66424709 | None:intergenic | 15.0% |
| !!! | TAATTTTGATTATGATTTTC+AGG | + | chr3_4:66424976-66424995 | Msa0515270:intron | 15.0% |
| !!! | AATTTTGATTATGATTTTCA+GGG | + | chr3_4:66424977-66424996 | Msa0515270:intron | 15.0% |
| !! | AAAATCAATTAAAACAAAAG+GGG | - | chr3_4:66425153-66425172 | None:intergenic | 15.0% |
| !!! | AAGTAGTTTTTCTATTTTTT+TGG | + | chr3_4:66425220-66425239 | Msa0515270:intron | 15.0% |
| !! | TTAAATTGAATATGACTAAT+AGG | + | chr3_4:66425338-66425357 | Msa0515270:intron | 15.0% |
| !! | TGATAATAAAAGAAAAGTTA+AGG | - | chr3_4:66426236-66426255 | None:intergenic | 15.0% |
| !! | GAAAGATTATGAATGAAATT+AGG | - | chr3_4:66424751-66424770 | None:intergenic | 20.0% |
| !!! | ATTTATTGGTTTGATTTGTT+AGG | + | chr3_4:66424820-66424839 | Msa0515270:intron | 20.0% |
| !!! | TTTATTGGTTTGATTTGTTA+GGG | + | chr3_4:66424821-66424840 | Msa0515270:intron | 20.0% |
| !!! | ATTTTGATTATGATTTTCAG+GGG | + | chr3_4:66424978-66424997 | Msa0515270:intron | 20.0% |
| !!! | TTTTCTATTTTTTTGGTTCA+AGG | + | chr3_4:66425227-66425246 | Msa0515270:intron | 20.0% |
| !! | ATGTTTCATATTAATCTACA+TGG | + | chr3_4:66425849-66425868 | Msa0515270:intron | 20.0% |
| !!! | ACTTTTCTTTTATTATCATC+AGG | + | chr3_4:66426238-66426257 | Msa0515270:intron | 20.0% |
| !!! | CTTTTCTTTTATTATCATCA+GGG | + | chr3_4:66426239-66426258 | Msa0515270:intron | 20.0% |
| !!! | TTTAATTTTGCAACAAGAAA+AGG | + | chr3_4:66426491-66426510 | Msa0515270:intron | 20.0% |
| !! | ATTTGATACAAAGATTGTAA+TGG | - | chr3_4:66427140-66427159 | None:intergenic | 20.0% |
| !!! | TAAAGCATTAAAGCTTTTTT+TGG | + | chr3_4:66427307-66427326 | Msa0515270:intron | 20.0% |
| !! | TGATTATGAACAATAACAAA+TGG | - | chr3_4:66427349-66427368 | None:intergenic | 20.0% |
| !! | TTAACTTCAGAAATAATACA+AGG | - | chr3_4:66427696-66427715 | None:intergenic | 20.0% |
| !! | TATTATATTATTATACGTGC+AGG | + | chr3_4:66427879-66427898 | Msa0515270:intron | 20.0% |
| ! | AGAAGAAGAAAGAAATGAAA+AGG | - | chr3_4:66424495-66424514 | None:intergenic | 25.0% |
| !! | GTGATTAATGGGAAATTTTA+TGG | + | chr3_4:66424948-66424967 | Msa0515270:intron | 25.0% |
| ! | GTTTAAGAGATATTTACCAT+TGG | - | chr3_4:66425131-66425150 | None:intergenic | 25.0% |
| ! | ATTTAATATGTGACATGCAA+TGG | - | chr3_4:66425324-66425343 | None:intergenic | 25.0% |
| ! | TTCGTTGAAAAACTATATTC+AGG | + | chr3_4:66425577-66425596 | Msa0515270:intron | 25.0% |
| !! | ACTTAATGTCTTTGATGATT+TGG | - | chr3_4:66425829-66425848 | None:intergenic | 25.0% |
| !! | ATATTCAGCAAATTTTAAGC+TGG | - | chr3_4:66425902-66425921 | None:intergenic | 25.0% |
| !! | TTATATACTGTAACCTTTTC+AGG | + | chr3_4:66426752-66426771 | Msa0515270:intron | 25.0% |
| !! | TTCTTTTGCAACATAAACTA+GGG | - | chr3_4:66427012-66427031 | None:intergenic | 25.0% |
| !! | AATTCATTGATAACAATCTC+TGG | - | chr3_4:66427061-66427080 | None:intergenic | 25.0% |
| ! | GAATTATAGTATTAAGGAGA+CGG | - | chr3_4:66427206-66427225 | None:intergenic | 25.0% |
| ! | CAGATGGAATTATAGTATTA+AGG | - | chr3_4:66427212-66427231 | None:intergenic | 25.0% |
| ! | TTAATGAACTTATGTTGTGA+AGG | - | chr3_4:66427384-66427403 | None:intergenic | 25.0% |
| ! | GAAACTTGAGAATAACATAT+TGG | - | chr3_4:66427512-66427531 | None:intergenic | 25.0% |
| !! | AAACTAGAAAGTTCTAACTA+TGG | - | chr3_4:66428038-66428057 | None:intergenic | 25.0% |
| AAGAGGAAAGAAAAGAATGA+AGG | - | chr3_4:66424525-66424544 | None:intergenic | 30.0% | |
| ! | CGATAAACATTTTTGTGAAG+AGG | - | chr3_4:66424542-66424561 | None:intergenic | 30.0% |
| GATTCAGTGTACTTAACATT+GGG | - | chr3_4:66424585-66424604 | None:intergenic | 30.0% | |
| AGATTCAGTGTACTTAACAT+TGG | - | chr3_4:66424586-66424605 | None:intergenic | 30.0% | |
| ! | ACGATTTTCATGAACAAGTT+CGG | - | chr3_4:66424640-66424659 | None:intergenic | 30.0% |
| CTTGTTCATGAAAATCGTAA+TGG | + | chr3_4:66424642-66424661 | Msa0515270:CDS | 30.0% | |
| CAATTTAGGGACATGAATAT+CGG | - | chr3_4:66424718-66424737 | None:intergenic | 30.0% | |
| GATATTCATGTCCCTAAATT+GGG | + | chr3_4:66424717-66424736 | Msa0515270:CDS | 30.0% | |
| ATATTCATGTCCCTAAATTG+GGG | + | chr3_4:66424718-66424737 | Msa0515270:CDS | 30.0% | |
| TTGTTGAATCTTATCTTTGG+TGG | - | chr3_4:66425015-66425034 | None:intergenic | 30.0% | |
| ATTCAACAAGCCAATTACTT+TGG | + | chr3_4:66425026-66425045 | Msa0515270:CDS | 30.0% | |
| AGATATTTACCATTGGAAGA+AGG | - | chr3_4:66425124-66425143 | None:intergenic | 30.0% | |
| ATGACTAATAGGATTTCAAC+AGG | + | chr3_4:66425349-66425368 | Msa0515270:intron | 30.0% | |
| ATTTCAACAGGTCTAATTTG+AGG | + | chr3_4:66425361-66425380 | Msa0515270:intron | 30.0% | |
| ATCAGTTTAAGCATGCTATA+AGG | + | chr3_4:66425442-66425461 | Msa0515270:intron | 30.0% | |
| AAATAAAATGGAGTCCAAGA+TGG | + | chr3_4:66425521-66425540 | Msa0515270:intron | 30.0% | |
| !! | TTGATTTGCAAAAGCAATTG+AGG | + | chr3_4:66425687-66425706 | Msa0515270:CDS | 30.0% |
| ATTTAAGGAAGCAAACAAAG+TGG | + | chr3_4:66425949-66425968 | Msa0515270:CDS | 30.0% | |
| ATAAAGAGAAGAAACAAACC+TGG | - | chr3_4:66426172-66426191 | None:intergenic | 30.0% | |
| AATCAAGTGACAGATTTAGA+GGG | - | chr3_4:66426198-66426217 | None:intergenic | 30.0% | |
| TAATCAAGTGACAGATTTAG+AGG | - | chr3_4:66426199-66426218 | None:intergenic | 30.0% | |
| AATCAAACAGTTGTTCTTGA+TGG | - | chr3_4:66426278-66426297 | None:intergenic | 30.0% | |
| ATCAAGAACAACTGTTTGAT+TGG | + | chr3_4:66426277-66426296 | Msa0515270:CDS | 30.0% | |
| ! | GACCAAAATGAAATCTGTTT+TGG | + | chr3_4:66426324-66426343 | Msa0515270:CDS | 30.0% |
| ! | CACCAAAACAGATTTCATTT+TGG | - | chr3_4:66426329-66426348 | None:intergenic | 30.0% |
| !! | CAAAATGAAATCTGTTTTGG+TGG | + | chr3_4:66426327-66426346 | Msa0515270:CDS | 30.0% |
| TTGTAACTCACTATTGATGT+TGG | - | chr3_4:66426546-66426565 | None:intergenic | 30.0% | |
| ATAGTGAGTTACAATCATCT+TGG | + | chr3_4:66426552-66426571 | Msa0515270:CDS | 30.0% | |
| AATCATCTTGGAAACAATGA+TGG | + | chr3_4:66426564-66426583 | Msa0515270:CDS | 30.0% | |
| TTAATGACTACAACATGATC+AGG | - | chr3_4:66426699-66426718 | None:intergenic | 30.0% | |
| TGATCATGTTGTAGTCATTA+AGG | + | chr3_4:66426698-66426717 | Msa0515270:CDS | 30.0% | |
| ! | TACACTTCGGAAATTTTCAT+GGG | + | chr3_4:66426848-66426867 | Msa0515270:CDS | 30.0% |
| ! | GTTCTTTTGCAACATAAACT+AGG | - | chr3_4:66427013-66427032 | None:intergenic | 30.0% |
| ! | GTTGCTCTGAATTAATGTTT+AGG | + | chr3_4:66427427-66427446 | Msa0515270:intron | 30.0% |
| !! | TGACTTTTGTTTCATGTCTT+TGG | + | chr3_4:66427463-66427482 | Msa0515270:intron | 30.0% |
| AAAATGACACGAAATGCAAA+TGG | - | chr3_4:66427567-66427586 | None:intergenic | 30.0% | |
| AAAATGACACGAAATGCAAA+TGG | - | chr3_4:66427567-66427586 | None:intergenic | 30.0% | |
| !! | TTCTGAAGTTAACTATGTTG+TGG | + | chr3_4:66427704-66427723 | Msa0515270:intron | 30.0% |
| TTTATCTATTTGTGCTCAGT+TGG | + | chr3_4:66428208-66428227 | Msa0515270:three_prime_UTR | 30.0% | |
| GTGTTTATTGCTTTACCTTA+TGG | + | chr3_4:66428230-66428249 | Msa0515270:three_prime_UTR | 30.0% | |
| !!! | TACCTTATGGTAGTTTTAAG+AGG | + | chr3_4:66428243-66428262 | Msa0515270:three_prime_UTR | 30.0% |
| GGTGGTTTCGTAATTGTAAA+CGG | - | chr3_4:66424619-66424638 | None:intergenic | 35.0% | |
| ! | ATTTTCATGAACAAGTTCGG+TGG | - | chr3_4:66424637-66424656 | None:intergenic | 35.0% |
| CGATATTCATGTCCCTAAAT+TGG | + | chr3_4:66424716-66424735 | Msa0515270:CDS | 35.0% | |
| AGGATACTAACCCCAATTTA+GGG | - | chr3_4:66424731-66424750 | None:intergenic | 35.0% | |
| TAGGATACTAACCCCAATTT+AGG | - | chr3_4:66424732-66424751 | None:intergenic | 35.0% | |
| ! | ATTTGTTAGGGTAATGCTTG+TGG | + | chr3_4:66424833-66424852 | Msa0515270:intron | 35.0% |
| TTTGTTAGGGTAATGCTTGT+GGG | + | chr3_4:66424834-66424853 | Msa0515270:intron | 35.0% | |
| !!! | TGATTTTCAGGGGTATTTCA+TGG | + | chr3_4:66424988-66425007 | Msa0515270:intron | 35.0% |
| !!! | GATTTTCAGGGGTATTTCAT+GGG | + | chr3_4:66424989-66425008 | Msa0515270:intron | 35.0% |
| !! | GGCTTGTTGAATCTTATCTT+TGG | - | chr3_4:66425018-66425037 | None:intergenic | 35.0% |
| AGTCAAGGATCCAAAGTAAT+TGG | - | chr3_4:66425039-66425058 | None:intergenic | 35.0% | |
| ATCCTTAACTCAAACCATCT+TGG | - | chr3_4:66425538-66425557 | None:intergenic | 35.0% | |
| ! | AACCCTGATGACATTGTTTT+TGG | + | chr3_4:66425602-66425621 | Msa0515270:CDS | 35.0% |
| CACCAAAAACAATGTCATCA+GGG | - | chr3_4:66425607-66425626 | None:intergenic | 35.0% | |
| !!! | ATGACATTGTTTTTGGTGGA+TGG | + | chr3_4:66425609-66425628 | Msa0515270:CDS | 35.0% |
| !!! | TGACATTGTTTTTGGTGGAT+GGG | + | chr3_4:66425610-66425629 | Msa0515270:CDS | 35.0% |
| CAAATCAATGTCAAAAACCC+TGG | - | chr3_4:66425675-66425694 | None:intergenic | 35.0% | |
| TGATTAGCAGCAATGAAATC+CGG | - | chr3_4:66425755-66425774 | None:intergenic | 35.0% | |
| GATTTCATTGCTGCTAATCA+AGG | + | chr3_4:66425755-66425774 | Msa0515270:CDS | 35.0% | |
| ACGTGCAAATAACGTTATCA+AGG | + | chr3_4:66425781-66425800 | Msa0515270:CDS | 35.0% | |
| CGTGCAAATAACGTTATCAA+GGG | + | chr3_4:66425782-66425801 | Msa0515270:CDS | 35.0% | |
| ACATGCATTCAGGGAATTTA+AGG | + | chr3_4:66425934-66425953 | Msa0515270:intron | 35.0% | |
| AGGTACAGTAACTTAGTTGT+AGG | + | chr3_4:66426007-66426026 | Msa0515270:CDS | 35.0% | |
| ATTCTCCATAACACAAGCAA+TGG | - | chr3_4:66426110-66426129 | None:intergenic | 35.0% | |
| GAGAATGTTCCTTTCATCAA+TGG | + | chr3_4:66426124-66426143 | Msa0515270:CDS | 35.0% | |
| AAGAACAACTGTTTGATTGG+TGG | + | chr3_4:66426280-66426299 | Msa0515270:CDS | 35.0% | |
| GAAGAGTAAAAGACCTGAAA+AGG | - | chr3_4:66426768-66426787 | None:intergenic | 35.0% | |
| ! | AGGTCTTTTACTCTTCACTT+TGG | + | chr3_4:66426772-66426791 | Msa0515270:intron | 35.0% |
| ! | GTACACTTCGGAAATTTTCA+TGG | + | chr3_4:66426847-66426866 | Msa0515270:CDS | 35.0% |
| AGAACCAAGTCCAAGATAAT+AGG | - | chr3_4:66426929-66426948 | None:intergenic | 35.0% | |
| ! | TCAGTTTAAATCTGAAGCTG+AGG | + | chr3_4:66426973-66426992 | Msa0515270:CDS | 35.0% |
| AATCAAAGAACTCTCGTTTC+AGG | - | chr3_4:66427111-66427130 | None:intergenic | 35.0% | |
| TTGCATGTCATTGTGTAACT+TGG | - | chr3_4:66427279-66427298 | None:intergenic | 35.0% | |
| !! | ATAATCATGCAGCTTTAGGA+AGG | - | chr3_4:66427407-66427426 | None:intergenic | 35.0% |
| CAACATAATCATGCAGCTTT+AGG | - | chr3_4:66427411-66427430 | None:intergenic | 35.0% | |
| TCAGTTTCAAGAGACAAATC+CGG | + | chr3_4:66427850-66427869 | Msa0515270:intron | 35.0% | |
| GAAAACATCAGCAAACCAAA+AGG | - | chr3_4:66428104-66428123 | None:intergenic | 35.0% | |
| TGCCTCTTAAAACTACCATA+AGG | - | chr3_4:66428248-66428267 | None:intergenic | 35.0% | |
| ATCGTAATGGCACTTATCAG+TGG | + | chr3_4:66424655-66424674 | Msa0515270:CDS | 40.0% | |
| TCTGTTAGCAATAACACCAC+CGG | - | chr3_4:66424889-66424908 | None:intergenic | 40.0% | |
| AATAGCTGAAGCTTGAGTCA+AGG | - | chr3_4:66425054-66425073 | None:intergenic | 40.0% | |
| !! | ATTCGAGTTGGATCTTTCCA+AGG | + | chr3_4:66425071-66425090 | Msa0515270:CDS | 40.0% |
| ATTGGAAGAAGGCTCTTGAA+AGG | - | chr3_4:66425113-66425132 | None:intergenic | 40.0% | |
| TTTCAAGAGCCTTCTTCCAA+TGG | + | chr3_4:66425112-66425131 | Msa0515270:CDS | 40.0% | |
| ! | GTCCAAGATGGTTTGAGTTA+AGG | + | chr3_4:66425533-66425552 | Msa0515270:intron | 40.0% |
| CCACCAAAAACAATGTCATC+AGG | - | chr3_4:66425608-66425627 | None:intergenic | 40.0% | |
| !!! | CCTGATGACATTGTTTTTGG+TGG | + | chr3_4:66425605-66425624 | Msa0515270:CDS | 40.0% |
| AAAGCAATTGAGGCCTTACA+TGG | + | chr3_4:66425697-66425716 | Msa0515270:CDS | 40.0% | |
| GATTAGCAGCAATGAAATCC+GGG | - | chr3_4:66425754-66425773 | None:intergenic | 40.0% | |
| TCCTATGTTGACATGCATTC+AGG | + | chr3_4:66425924-66425943 | Msa0515270:intron | 40.0% | |
| CCTATGTTGACATGCATTCA+GGG | + | chr3_4:66425925-66425944 | Msa0515270:intron | 40.0% | |
| AACACAAGCAATGGCAAACA+GGG | - | chr3_4:66426101-66426120 | None:intergenic | 40.0% | |
| TAACACAAGCAATGGCAAAC+AGG | - | chr3_4:66426102-66426121 | None:intergenic | 40.0% | |
| GTTTGCCATTGCTTGTGTTA+TGG | + | chr3_4:66426102-66426121 | Msa0515270:CDS | 40.0% | |
| TGAGGACTTCCATTGATGAA+AGG | - | chr3_4:66426136-66426155 | None:intergenic | 40.0% | |
| !!! | GTTTTGGTGGATTTCCTTGT+AGG | + | chr3_4:66426340-66426359 | Msa0515270:CDS | 40.0% |
| TCTTGGAAATTTCCTTGGAG+CGG | - | chr3_4:66426617-66426636 | None:intergenic | 40.0% | |
| GTTGCTCTTGGAAATTTCCT+TGG | - | chr3_4:66426622-66426641 | None:intergenic | 40.0% | |
| ACATAAGGCACATACTGCAA+AGG | - | chr3_4:66426800-66426819 | None:intergenic | 40.0% | |
| TTGCAGTATGTGCCTTATGT+TGG | + | chr3_4:66426800-66426819 | Msa0515270:intron | 40.0% | |
| AGCTATGGATGAGTACACTT+CGG | + | chr3_4:66426835-66426854 | Msa0515270:CDS | 40.0% | |
| ! | ACTTCGGAAATTTTCATGGG+TGG | + | chr3_4:66426851-66426870 | Msa0515270:CDS | 40.0% |
| ! | CTTCGGAAATTTTCATGGGT+GGG | + | chr3_4:66426852-66426871 | Msa0515270:CDS | 40.0% |
| GATAATAGGAGCAGCCAAAA+GGG | - | chr3_4:66426915-66426934 | None:intergenic | 40.0% | |
| AGATAATAGGAGCAGCCAAA+AGG | - | chr3_4:66426916-66426935 | None:intergenic | 40.0% | |
| TTTGGCTGCTCCTATTATCT+TGG | + | chr3_4:66426916-66426935 | Msa0515270:CDS | 40.0% | |
| TGCTCCTATTATCTTGGACT+TGG | + | chr3_4:66426922-66426941 | Msa0515270:CDS | 40.0% | |
| ! | AAACTGTGCAACTTGCTCAA+TGG | + | chr3_4:66427166-66427185 | Msa0515270:intron | 40.0% |
| ! | TGCAACTTGCTCAATGGTTA+TGG | + | chr3_4:66427172-66427191 | Msa0515270:intron | 40.0% |
| ATAACTGAGGATGGTAGCAA+CGG | - | chr3_4:66427761-66427780 | None:intergenic | 40.0% | |
| AAGTAGAATTAACGCACCAG+AGG | - | chr3_4:66427796-66427815 | None:intergenic | 40.0% | |
| TTTGACAATGCATTCACCAC+TGG | - | chr3_4:66427919-66427938 | None:intergenic | 40.0% | |
| AACATCATGAGAGCTTGTGT+TGG | + | chr3_4:66427958-66427977 | Msa0515270:CDS | 40.0% | |
| ! | TCTAGGATCATGTTGTTCTC+TGG | - | chr3_4:66427991-66428010 | None:intergenic | 40.0% |
| AACAACGGTTCAACCCTTAC+CGG | + | chr3_4:66424867-66424886 | Msa0515270:CDS | 45.0% | |
| AGCAATAACACCACCGGTAA+GGG | - | chr3_4:66424883-66424902 | None:intergenic | 45.0% | |
| TAGCAATAACACCACCGGTA+AGG | - | chr3_4:66424884-66424903 | None:intergenic | 45.0% | |
| CAAGCTTCAGCTATTCGAGT+TGG | + | chr3_4:66425059-66425078 | Msa0515270:CDS | 45.0% | |
| AGTTGGATCTTTCCAAGGAG+AGG | + | chr3_4:66425076-66425095 | Msa0515270:CDS | 45.0% | |
| GAGCATGAATTTCCTCTCCT+TGG | - | chr3_4:66425091-66425110 | None:intergenic | 45.0% | |
| GGAACCATGGATTCCATGTA+AGG | - | chr3_4:66425713-66425732 | None:intergenic | 45.0% | |
| ACTTCCTGGTATCTATGACC+CGG | + | chr3_4:66425733-66425752 | Msa0515270:CDS | 45.0% | |
| AAATCCGGGTCATAGATACC+AGG | - | chr3_4:66425740-66425759 | None:intergenic | 45.0% | |
| CCCTGAATGCATGTCAACAT+AGG | - | chr3_4:66425928-66425947 | None:intergenic | 45.0% | |
| AGGAAGCAAACAAAGTGGAC+AGG | + | chr3_4:66425954-66425973 | Msa0515270:CDS | 45.0% | |
| GGAAGCAAACAAAGTGGACA+GGG | + | chr3_4:66425955-66425974 | Msa0515270:CDS | 45.0% | |
| GTTACTGTACCTCTCTGTGT+TGG | - | chr3_4:66425999-66426018 | None:intergenic | 45.0% | |
| TGTAGGACTCAATGACACCA+TGG | + | chr3_4:66426024-66426043 | Msa0515270:CDS | 45.0% | |
| AGCAGCAAAAAGGTTCTCCA+TGG | - | chr3_4:66426044-66426063 | None:intergenic | 45.0% | |
| TTCTGTCCACAGCAGCAAAA+AGG | - | chr3_4:66426054-66426073 | None:intergenic | 45.0% | |
| !! | CCTGGAACAAAAGTGTTCTG+AGG | - | chr3_4:66426154-66426173 | None:intergenic | 45.0% |
| ! | CCTCAGAACACTTTTGTTCC+AGG | + | chr3_4:66426151-66426170 | Msa0515270:CDS | 45.0% |
| ! | GGTGGTGATGATTTCAAGAG+TGG | + | chr3_4:66426298-66426317 | Msa0515270:CDS | 45.0% |
| ATCGTCAACAACGTTGCTCT+TGG | - | chr3_4:66426634-66426653 | None:intergenic | 45.0% | |
| GAGCAACGTTGTTGACGATA+TGG | + | chr3_4:66426635-66426654 | Msa0515270:CDS | 45.0% | |
| ! | CTCTTGCTGTCACCAACATA+AGG | - | chr3_4:66426815-66426834 | None:intergenic | 45.0% |
| TGTGTTGCACAACACATGTG+AGG | + | chr3_4:66426886-66426905 | Msa0515270:CDS | 45.0% | |
| GCTCAATGGTTATGGACCAA+AGG | + | chr3_4:66427180-66427199 | Msa0515270:intron | 45.0% | |
| AGTATTAAGGAGACGGCCTT+TGG | - | chr3_4:66427199-66427218 | None:intergenic | 45.0% | |
| CCATACTCTTCAGAAGCAGA+TGG | - | chr3_4:66427228-66427247 | None:intergenic | 45.0% | |
| ! | CCATCTGCTTCTGAAGAGTA+TGG | + | chr3_4:66427225-66427244 | Msa0515270:intron | 45.0% |
| TAACTGAGGATGGTAGCAAC+GGG | - | chr3_4:66427760-66427779 | None:intergenic | 45.0% | |
| CTTGGTCAGATAACTGAGGA+TGG | - | chr3_4:66427770-66427789 | None:intergenic | 45.0% | |
| CATCCTCAGTTATCTGACCA+AGG | + | chr3_4:66427768-66427787 | Msa0515270:CDS | 45.0% | |
| ATTATACGTGCAGGTTCCAC+CGG | + | chr3_4:66427888-66427907 | Msa0515270:intron | 45.0% | |
| CATGAGAGCTTGTGTTGGAT+TGG | + | chr3_4:66427963-66427982 | Msa0515270:CDS | 45.0% | |
| TCCTAGAGTACAAGTGAAGC+AGG | + | chr3_4:66428004-66428023 | Msa0515270:exon | 45.0% | |
| CCTAGAGTACAAGTGAAGCA+GGG | + | chr3_4:66428005-66428024 | Msa0515270:exon | 45.0% | |
| CTAGAGTACAAGTGAAGCAG+GGG | + | chr3_4:66428006-66428025 | Msa0515270:exon | 45.0% | |
| !! | CTCCCAAGTACTTTAGAGCA+GGG | + | chr3_4:66428150-66428169 | Msa0515270:three_prime_UTR | 45.0% |
| !! | AGCCCTGCTCTAAAGTACTT+GGG | - | chr3_4:66428155-66428174 | None:intergenic | 45.0% |
| !! | AAGCCCTGCTCTAAAGTACT+TGG | - | chr3_4:66428156-66428175 | None:intergenic | 45.0% |
| !!! | AGCAGGGCTTAGCTTGTTTT+TGG | + | chr3_4:66428166-66428185 | Msa0515270:three_prime_UTR | 45.0% |
| !!! | GCAGGGCTTAGCTTGTTTTT+GGG | + | chr3_4:66428167-66428186 | Msa0515270:three_prime_UTR | 45.0% |
| !! | TAATAATATAATATAATAAC+CGG | - | chr3_4:66427872-66427891 | None:intergenic | 5.0% |
| TTAGGGTAATGCTTGTGGGC+TGG | + | chr3_4:66424838-66424857 | Msa0515270:intron | 50.0% | |
| TAGGGTAATGCTTGTGGGCT+GGG | + | chr3_4:66424839-66424858 | Msa0515270:intron | 50.0% | |
| CATGAACCTTGCTGATGCCA+TGG | + | chr3_4:66425643-66425662 | Msa0515270:CDS | 50.0% | |
| GAGGCCTTACATGGAATCCA+TGG | + | chr3_4:66425706-66425725 | Msa0515270:CDS | 50.0% | |
| GAATCCATGGTTCCACTTCC+TGG | + | chr3_4:66425719-66425738 | Msa0515270:CDS | 50.0% | |
| GATACCAGGAAGTGGAACCA+TGG | - | chr3_4:66425726-66425745 | None:intergenic | 50.0% | |
| GGGTCATAGATACCAGGAAG+TGG | - | chr3_4:66425734-66425753 | None:intergenic | 50.0% | |
| TGGACAGGGTTGTTGTACTC+TGG | + | chr3_4:66425969-66425988 | Msa0515270:CDS | 50.0% | |
| ! | GGAGAACCTTTTTGCTGCTG+TGG | + | chr3_4:66426045-66426064 | Msa0515270:CDS | 50.0% |
| ACAAGCAATGGCAAACAGGG+TGG | - | chr3_4:66426098-66426117 | None:intergenic | 50.0% | |
| GTGGATTTCCTTGTAGGAGC+TGG | + | chr3_4:66426346-66426365 | Msa0515270:CDS | 50.0% | |
| CCTTGATACCAGCTCCTACA+AGG | - | chr3_4:66426357-66426376 | None:intergenic | 50.0% | |
| CCTTGTAGGAGCTGGTATCA+AGG | + | chr3_4:66426354-66426373 | Msa0515270:CDS | 50.0% | |
| GGAAATTTCCTTGGAGCGGA+AGG | - | chr3_4:66426613-66426632 | None:intergenic | 50.0% | |
| AATGCCATCCTCTATGCACC+TGG | + | chr3_4:66426666-66426685 | Msa0515270:CDS | 50.0% | |
| ACATGATCAGGATGTTCGCC+AGG | - | chr3_4:66426687-66426706 | None:intergenic | 50.0% | |
| TGGTGACAGCAAGAGAGCTA+TGG | + | chr3_4:66426820-66426839 | Msa0515270:CDS | 50.0% | |
| ! | CACATGTGAGGACTCCCTTT+TGG | + | chr3_4:66426898-66426917 | Msa0515270:CDS | 50.0% |
| ! | CTCTCGTTTCAGGTGTCAGA+AGG | - | chr3_4:66427101-66427120 | None:intergenic | 50.0% |
| AACTGAGGATGGTAGCAACG+GGG | - | chr3_4:66427759-66427778 | None:intergenic | 50.0% | |
| GAGCCTTGGTCAGATAACTG+AGG | - | chr3_4:66427774-66427793 | None:intergenic | 50.0% | |
| TTATCTGACCAAGGCTCCTC+TGG | + | chr3_4:66427777-66427796 | Msa0515270:CDS | 50.0% | |
| TTATACGTGCAGGTTCCACC+GGG | + | chr3_4:66427889-66427908 | Msa0515270:intron | 50.0% | |
| CCCTGCTTCACTTGTACTCT+AGG | - | chr3_4:66428008-66428027 | None:intergenic | 50.0% | |
| !! | GCTCCCAAGTACTTTAGAGC+AGG | + | chr3_4:66428149-66428168 | Msa0515270:three_prime_UTR | 50.0% |
| ! | AGGGTAATGCTTGTGGGCTG+GGG | + | chr3_4:66424840-66424859 | Msa0515270:intron | 55.0% |
| AACGGTTCAACCCTTACCGG+TGG | + | chr3_4:66424870-66424889 | Msa0515270:CDS | 55.0% | |
| ACCTTGCTGATGCCATGGCT+AGG | + | chr3_4:66425648-66425667 | Msa0515270:CDS | 55.0% | |
| CCTTGCTGATGCCATGGCTA+GGG | + | chr3_4:66425649-66425668 | Msa0515270:CDS | 55.0% | |
| AAAAACCCTGGCCCTAGCCA+TGG | - | chr3_4:66425663-66425682 | None:intergenic | 55.0% | |
| TCTGGACTGCCAACACAGAG+AGG | + | chr3_4:66425987-66426006 | Msa0515270:CDS | 55.0% | |
| GCAATGGCAAACAGGGTGGA+AGG | - | chr3_4:66426094-66426113 | None:intergenic | 55.0% | |
| CTTGGAGCGGAAGGTTTGTG+GGG | - | chr3_4:66426604-66426623 | None:intergenic | 55.0% | |
| CCTTGGAGCGGAAGGTTTGT+GGG | - | chr3_4:66426605-66426624 | None:intergenic | 55.0% | |
| TCCTTGGAGCGGAAGGTTTG+TGG | - | chr3_4:66426606-66426625 | None:intergenic | 55.0% | |
| TTCGCCAGGTGCATAGAGGA+TGG | - | chr3_4:66426673-66426692 | None:intergenic | 55.0% | |
| GATGTTCGCCAGGTGCATAG+AGG | - | chr3_4:66426677-66426696 | None:intergenic | 55.0% | |
| GATGGTAGCAACGGGGTGAA+AGG | - | chr3_4:66427752-66427771 | None:intergenic | 55.0% | |
| TTAACGCACCAGAGGAGCCT+TGG | - | chr3_4:66427788-66427807 | None:intergenic | 55.0% | |
| GTCAAAGCAGCGAGCAATGC+TGG | + | chr3_4:66427933-66427952 | Msa0515270:CDS | 55.0% | |
| !! | GTAATGCTTGTGGGCTGGGG+TGG | + | chr3_4:66424843-66424862 | Msa0515270:CDS | 60.0% |
| !! | GTGGGCTGGGGTGGAAACAA+CGG | + | chr3_4:66424852-66424871 | Msa0515270:CDS | 60.0% |
| CCCTAGCCATGGCATCAGCA+AGG | - | chr3_4:66425652-66425671 | None:intergenic | 60.0% | |
| TGATGCCATGGCTAGGGCCA+GGG | + | chr3_4:66425655-66425674 | Msa0515270:CDS | 60.0% | |
| GGAAGGTTTGTGGGGCTGAG+AGG | - | chr3_4:66426596-66426615 | None:intergenic | 60.0% | |
| CCCACAAACCTTCCGCTCCA+AGG | + | chr3_4:66426602-66426621 | Msa0515270:CDS | 60.0% | |
| GCATTCACCACTGGTGTGCC+CGG | - | chr3_4:66427910-66427929 | None:intergenic | 60.0% | |
| CTGATGCCATGGCTAGGGCC+AGG | + | chr3_4:66425654-66425673 | Msa0515270:CDS | 65.0% | |
| TTCACCACTGGTGTGCCCGG+TGG | - | chr3_4:66427907-66427926 | None:intergenic | 65.0% | |
| GGTTCCACCGGGCACACCAG+TGG | + | chr3_4:66427900-66427919 | Msa0515270:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 66424440 | 66428282 | 66424440 | ID=Msa0515270;Name=Msa0515270 |
| chr3_4 | mRNA | 66424440 | 66428282 | 66424440 | ID=Msa0515270-mRNA-1;Parent=Msa0515270;Name=Msa0515270-mRNA-1;_AED=0.12;_eAED=0.12;_QI=112|1|1|1|1|1|10|262|510 |
| chr3_4 | exon | 66424440 | 66424739 | 66424440 | ID=Msa0515270-mRNA-1:exon:17087;Parent=Msa0515270-mRNA-1 |
| chr3_4 | exon | 66424842 | 66424910 | 66424842 | ID=Msa0515270-mRNA-1:exon:17088;Parent=Msa0515270-mRNA-1 |
| chr3_4 | exon | 66424998 | 66425133 | 66424998 | ID=Msa0515270-mRNA-1:exon:17089;Parent=Msa0515270-mRNA-1 |
| chr3_4 | exon | 66425599 | 66425846 | 66425599 | ID=Msa0515270-mRNA-1:exon:17090;Parent=Msa0515270-mRNA-1 |
| chr3_4 | exon | 66425946 | 66426172 | 66425946 | ID=Msa0515270-mRNA-1:exon:17091;Parent=Msa0515270-mRNA-1 |
| chr3_4 | exon | 66426260 | 66426375 | 66426260 | ID=Msa0515270-mRNA-1:exon:17092;Parent=Msa0515270-mRNA-1 |
| chr3_4 | exon | 66426543 | 66426719 | 66426543 | ID=Msa0515270-mRNA-1:exon:17093;Parent=Msa0515270-mRNA-1 |
| chr3_4 | exon | 66426806 | 66426994 | 66426806 | ID=Msa0515270-mRNA-1:exon:17094;Parent=Msa0515270-mRNA-1 |
| chr3_4 | exon | 66427736 | 66427798 | 66427736 | ID=Msa0515270-mRNA-1:exon:17095;Parent=Msa0515270-mRNA-1 |
| chr3_4 | exon | 66427901 | 66428282 | 66427901 | ID=Msa0515270-mRNA-1:exon:17096;Parent=Msa0515270-mRNA-1 |
| chr3_4 | five_prime_UTR | 66424440 | 66424551 | 66424440 | ID=Msa0515270-mRNA-1:five_prime_utr;Parent=Msa0515270-mRNA-1 |
| chr3_4 | CDS | 66424552 | 66424739 | 66424552 | ID=Msa0515270-mRNA-1:cds;Parent=Msa0515270-mRNA-1 |
| chr3_4 | CDS | 66424842 | 66424910 | 66424842 | ID=Msa0515270-mRNA-1:cds;Parent=Msa0515270-mRNA-1 |
| chr3_4 | CDS | 66424998 | 66425133 | 66424998 | ID=Msa0515270-mRNA-1:cds;Parent=Msa0515270-mRNA-1 |
| chr3_4 | CDS | 66425599 | 66425846 | 66425599 | ID=Msa0515270-mRNA-1:cds;Parent=Msa0515270-mRNA-1 |
| chr3_4 | CDS | 66425946 | 66426172 | 66425946 | ID=Msa0515270-mRNA-1:cds;Parent=Msa0515270-mRNA-1 |
| chr3_4 | CDS | 66426260 | 66426375 | 66426260 | ID=Msa0515270-mRNA-1:cds;Parent=Msa0515270-mRNA-1 |
| chr3_4 | CDS | 66426543 | 66426719 | 66426543 | ID=Msa0515270-mRNA-1:cds;Parent=Msa0515270-mRNA-1 |
| chr3_4 | CDS | 66426806 | 66426994 | 66426806 | ID=Msa0515270-mRNA-1:cds;Parent=Msa0515270-mRNA-1 |
| chr3_4 | CDS | 66427736 | 66427798 | 66427736 | ID=Msa0515270-mRNA-1:cds;Parent=Msa0515270-mRNA-1 |
| chr3_4 | CDS | 66427901 | 66428020 | 66427901 | ID=Msa0515270-mRNA-1:cds;Parent=Msa0515270-mRNA-1 |
| chr3_4 | three_prime_UTR | 66428021 | 66428282 | 66428021 | ID=Msa0515270-mRNA-1:three_prime_utr;Parent=Msa0515270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
