AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0376230

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376230 MtrunA17_Chr3g0126551 99.721 358 1 0 1 358 1 358 0.0 739
Msa0376230 MtrunA17_Chr1g0158851 80.645 341 62 2 17 357 25 361 0.0 547
Msa0376230 MtrunA17_Chr5g0413701 68.167 311 82 4 44 353 44 338 7.08e-160 451
Msa0376230 MtrunA17_Chr8g0365071 66.019 309 90 3 45 353 44 337 5.63e-155 439
Msa0376230 MtrunA17_Chr3g0117881 64.057 281 94 3 75 350 50 328 2.63e-128 371
Msa0376230 MtrunA17_Chr5g0394371 33.178 214 135 6 95 303 51 261 8.68e-33 124
Msa0376230 MtrunA17_Chr1g0150851 29.078 282 189 8 83 358 56 332 1.13e-29 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0376230 AT5G53120.1 80.286 350 67 2 8 356 8 356 0.0 559
Msa0376230 AT5G53120.4 80.286 350 67 2 8 356 8 356 0.0 559
Msa0376230 AT5G53120.2 80.286 350 67 2 8 356 8 356 0.0 559
Msa0376230 AT5G53120.5 80.286 350 67 2 8 356 8 356 0.0 559
Msa0376230 AT5G53120.3 80.286 350 67 2 8 356 8 356 0.0 559
Msa0376230 AT5G53120.7 80.286 350 67 2 8 356 25 373 0.0 558
Msa0376230 AT5G53120.6 72.414 377 75 4 8 356 8 383 0.0 550
Msa0376230 AT1G23820.1 66.775 307 86 2 44 350 36 326 2.65e-158 447
Msa0376230 AT1G70310.1 65.472 307 92 2 44 350 40 332 5.35e-154 437
Msa0376230 AT1G23820.2 60.839 286 92 2 14 293 44 315 6.92e-129 372
Msa0376230 AT5G19530.2 29.365 252 170 6 57 303 14 262 7.14e-33 125
Msa0376230 AT5G19530.1 29.365 252 170 6 57 303 21 269 1.04e-32 125

Find 199 sgRNAs with CRISPR-Local

Find 449 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCACATGAAAGAAAA+TGG 0.147870 3_1:+76268508 None:intergenic
CATGAAATAATTAATGTATT+TGG 0.156868 3_1:+76262454 None:intergenic
GCCGGTTGTGATTAGTTAAT+TGG 0.182603 3_1:-76262013 Msa0376230:three_prime_UTR
GTCGAAAGGTCTTGTATAAT+TGG 0.185038 3_1:+76262164 None:intergenic
TATTGATGTATTGAGTAATT+TGG 0.190055 3_1:-76263168 Msa0376230:three_prime_UTR
TGTCACTCTACCGTTGTTTC+GGG 0.194129 3_1:-76267390 Msa0376230:CDS
CTTAATTTAATAGAGTTTAA+TGG 0.209727 3_1:-76268536 Msa0376230:five_prime_UTR
AGAGTTCAACAAGGCTTAAA+TGG 0.215102 3_1:+76263252 None:intergenic
ACATAGCAAGTGTGTTTAAA+TGG 0.233942 3_1:-76263088 Msa0376230:three_prime_UTR
GTGGAGATGGTGGGGTTCTA+AGG 0.243049 3_1:-76266086 Msa0376230:CDS
GTGAAGAAAAGGGTTATTTA+TGG 0.247821 3_1:-76267547 Msa0376230:exon
AGTTCTTTGATTGCTTCTTC+TGG 0.248742 3_1:+76268443 None:intergenic
TAGATTATTGTGGGAGAAAT+AGG 0.256539 3_1:-76263318 Msa0376230:three_prime_UTR
GAATTACATGCAATCTCTTA+TGG 0.258048 3_1:-76261960 Msa0376230:three_prime_UTR
ATTTGTCGAGAAACATTTAA+AGG 0.261361 3_1:-76264407 Msa0376230:CDS
CAAAGCCACTATTGAGAGTT+TGG 0.273249 3_1:-76262203 Msa0376230:three_prime_UTR
TTGTCACTCTACCGTTGTTT+CGG 0.279338 3_1:-76267391 Msa0376230:CDS
AGTCATTCAATAAACCTAAA+AGG 0.285726 3_1:+76262501 None:intergenic
CGGTGGAGTTCTTTGTAATA+TGG 0.303405 3_1:-76264477 Msa0376230:CDS
GGCCGAGTTGGATGAGATTT+TGG 0.309977 3_1:-76263037 Msa0376230:three_prime_UTR
GTTGGTACAAACTCTTGCTT+TGG 0.323146 3_1:-76262991 Msa0376230:three_prime_UTR
GTTCTTTGATTGCTTCTTCT+GGG 0.324975 3_1:+76268444 None:intergenic
TCTTCTCTACTTTGATTGAA+TGG 0.326205 3_1:+76266767 None:intergenic
TATCTAATACACTCTTTGTA+TGG 0.333752 3_1:-76262687 Msa0376230:three_prime_UTR
CCTTCCCATCCATAGTCTTC+TGG 0.342826 3_1:+76267496 None:intergenic
ATGGTTTCTCTACAAGTTCC+TGG 0.346919 3_1:+76264531 None:intergenic
CTTCTCTACTTTGATTGAAT+GGG 0.348057 3_1:+76266768 None:intergenic
TTGGTACAAACTCTTGCTTT+GGG 0.351156 3_1:-76262990 Msa0376230:three_prime_UTR
ATTGATGTATTGAGTAATTT+GGG 0.351222 3_1:-76263167 Msa0376230:three_prime_UTR
AATGGGTTCACAGACGGAAT+TGG 0.355718 3_1:+76263270 None:intergenic
TGAAGAAAAGGGTTATTTAT+GGG 0.362253 3_1:-76267546 Msa0376230:exon
TGGAGAGCATGTCTTGAATA+AGG 0.362663 3_1:+76264429 None:intergenic
TTAGTTGTTGGTGGTGGAGA+TGG 0.363986 3_1:-76266099 Msa0376230:CDS
TGAGTAACAAAGGAAATTCA+TGG 0.366267 3_1:+76262742 None:intergenic
ATAAGCATCGGAGGAATCTT+AGG 0.367711 3_1:-76263606 Msa0376230:CDS
TTTAAATGTTTCTCGACAAA+TGG 0.372736 3_1:+76264409 None:intergenic
TTCTCCACATGAAAGAAAAT+GGG 0.373745 3_1:+76268509 None:intergenic
TGACAATTGGCCTCCAACTC+AGG 0.374602 3_1:+76267408 None:intergenic
GGGAAAGTTCTTGTACTTGA+TGG 0.375756 3_1:-76266603 Msa0376230:CDS
TTGGTATGCAGTGGTGTGAT+AGG 0.380687 3_1:-76263709 Msa0376230:intron
TTACTCAATACATCAATAAC+TGG 0.384736 3_1:+76263173 None:intergenic
GTTGTTGGTGGTGGAGATGG+TGG 0.389147 3_1:-76266096 Msa0376230:CDS
TTGTTGGTGGTGGAGATGGT+GGG 0.396225 3_1:-76266095 Msa0376230:CDS
GATGGTGAGAGTAAAATCTA+TGG 0.398569 3_1:-76262860 Msa0376230:three_prime_UTR
GGCTTCAGCCCCTGAGTTGG+AGG 0.399000 3_1:-76267418 Msa0376230:CDS
AATCCCATTGAAAAGTTAGA+AGG 0.400616 3_1:-76263634 Msa0376230:CDS
GACTGGAGCCAGTGAAGAAA+AGG 0.401060 3_1:-76267558 Msa0376230:five_prime_UTR
ATTTAAGCCTTGTTGAACTC+TGG 0.402210 3_1:-76263250 Msa0376230:three_prime_UTR
TATTGAGTAATTTGGGATGC+AGG 0.405239 3_1:-76263160 Msa0376230:three_prime_UTR
TGTATGGGACTCCAATGATT+TGG 0.412416 3_1:-76262671 Msa0376230:three_prime_UTR
TGGATGGGAAGGCGAGTAAC+AGG 0.416616 3_1:-76267485 Msa0376230:CDS
ACGGCGTCATACCTCCCTTC+AGG 0.420015 3_1:+76265698 None:intergenic
GTATTGTACCACTAGTCATC+TGG 0.427071 3_1:-76263346 Msa0376230:three_prime_UTR
GTCACTGTACCAAGAGGTCT+TGG 0.430881 3_1:-76266728 Msa0376230:CDS
TTCAACATTAATATTAGAAG+AGG 0.438833 3_1:+76261980 None:intergenic
AACAGTCACCTGGCCACATT+GGG 0.439358 3_1:+76267200 None:intergenic
TTTGGAATGCCAGAAGACTA+TGG 0.441748 3_1:-76267505 Msa0376230:CDS
GGCGAGTAACAGGAATGGTT+TGG 0.443384 3_1:-76267475 Msa0376230:CDS
TCCAATTAACTAATCACAAC+CGG 0.446405 3_1:+76262012 None:intergenic
GAATTACAAAATAGTTATGA+TGG 0.447656 3_1:-76262878 Msa0376230:three_prime_UTR
TATAGGCCGCACCAAATCAT+TGG 0.448044 3_1:+76262660 None:intergenic
TTAAGTTTCACAATATTACT+AGG 0.448810 3_1:+76262076 None:intergenic
TTTAAGCCTTGTTGAACTCT+GGG 0.450398 3_1:-76263249 Msa0376230:three_prime_UTR
ATCTTTCAATATACTCTCTC+CGG 0.462182 3_1:-76262547 Msa0376230:three_prime_UTR
AAGTCAGAAGTTGCAGGAAA+AGG 0.463232 3_1:-76262239 Msa0376230:three_prime_UTR
TTCTCTACAAGTTCCTGGGC+AGG 0.463913 3_1:+76264536 None:intergenic
GGAAAGTTCTTGTACTTGAT+GGG 0.470422 3_1:-76266602 Msa0376230:CDS
TCAGCATCTCAAACTTGCTC+TGG 0.472000 3_1:-76267360 Msa0376230:intron
TTCAACAACCCAATGTGGCC+AGG 0.474309 3_1:-76267208 Msa0376230:intron
GAGTTCAACAAGGCTTAAAT+GGG 0.474564 3_1:+76263253 None:intergenic
ACCTCATTCTTCAGAAATGC+AGG 0.477276 3_1:+76263402 None:intergenic
TGTTGGTGGTGGAGATGGTG+GGG 0.479762 3_1:-76266094 Msa0376230:CDS
GGACGCCGTAGAAAGAGGTT+TGG 0.482254 3_1:-76267523 Msa0376230:CDS
CAGACGATATTTACACTCAT+AGG 0.483093 3_1:-76262104 Msa0376230:three_prime_UTR
ATCTGAGGAATCAACAATTA+CGG 0.484857 3_1:+76265679 None:intergenic
GTCACATTTGAAGATGAAAG+TGG 0.490722 3_1:-76262940 Msa0376230:three_prime_UTR
AGTATCCAAACTCTCAATAG+TGG 0.493375 3_1:+76262198 None:intergenic
TATTTGTGAGATAGATAAGA+TGG 0.498631 3_1:-76266028 Msa0376230:CDS
AATCAAAAGTCAGAAGTTGC+AGG 0.499303 3_1:-76262245 Msa0376230:three_prime_UTR
GCATTCCAAACCTCTTTCTA+CGG 0.502649 3_1:+76267518 None:intergenic
TTCAACAACCCGAGGCTAGC+CGG 0.503235 3_1:-76262031 Msa0376230:three_prime_UTR
AAGGTTCTGTACATTATGCA+TGG 0.503330 3_1:-76264388 Msa0376230:CDS
GCAAGGCAACATCAACATCA+AGG 0.505969 3_1:-76268570 Msa0376230:five_prime_UTR
GTAATATGGCAGAAAGTATG+TGG 0.507464 3_1:-76264463 Msa0376230:CDS
CAACTCAGGGGCTGAAGCCA+TGG 0.509823 3_1:+76267422 None:intergenic
TTCATGTTGTTTGAAAGCCA+TGG 0.510589 3_1:-76267439 Msa0376230:CDS
CTGGGGAAATAGATTATTGT+GGG 0.512870 3_1:-76263327 Msa0376230:three_prime_UTR
TTTGCGGTGTTTATTACCGT+TGG 0.514565 3_1:-76263009 Msa0376230:three_prime_UTR
TGGAGATGGTGGGGTTCTAA+GGG 0.514791 3_1:-76266085 Msa0376230:CDS
GTAATTTGGGATGCAGGGTG+TGG 0.515529 3_1:-76263154 Msa0376230:three_prime_UTR
TGAAGGGAGAGAGACCTGTC+TGG 0.518282 3_1:+76268369 None:intergenic
TGGTATGCAGTGGTGTGATA+GGG 0.519393 3_1:-76263708 Msa0376230:intron
GAAGAAAAGGGTTATTTATG+GGG 0.519700 3_1:-76267545 Msa0376230:exon
AAACTCTACCTTGGATATGT+TGG 0.521419 3_1:+76264356 None:intergenic
TATCGTCTGTCCACATGAAA+CGG 0.522259 3_1:+76262118 None:intergenic
GAATGCCAGAAGACTATGGA+TGG 0.522599 3_1:-76267501 Msa0376230:CDS
TAACAGTCACCTGGCCACAT+TGG 0.523868 3_1:+76267199 None:intergenic
AACAACGGTAGAGTGACAAT+TGG 0.525820 3_1:+76267395 None:intergenic
GGAGGAGTAGAAAATACTAA+TGG 0.526512 3_1:-76268614 None:intergenic
AATCACAACCGGCTAGCCTC+GGG 0.527262 3_1:+76262023 None:intergenic
AAAGGATGAATGTGCTTACC+AGG 0.527996 3_1:-76266562 Msa0376230:CDS
TATTGTACCACTAGTCATCT+GGG 0.529083 3_1:-76263345 Msa0376230:three_prime_UTR
TAATCACAACCGGCTAGCCT+CGG 0.533627 3_1:+76262022 None:intergenic
TTTCTTAAACGTGCACCTGA+AGG 0.534171 3_1:-76265713 Msa0376230:CDS
GACAATTGGCCTCCAACTCA+GGG 0.536122 3_1:+76267409 None:intergenic
ATCTAATACACTCTTTGTAT+GGG 0.542021 3_1:-76262686 Msa0376230:three_prime_UTR
GGAGATGAGCTATCATCTCC+TGG 0.549717 3_1:+76266544 None:intergenic
TTCTTAAACGTGCACCTGAA+GGG 0.550495 3_1:-76265712 Msa0376230:CDS
TGGTTTCTCTACAAGTTCCT+GGG 0.552051 3_1:+76264532 None:intergenic
TTTCTTCTATGCTCAACAGA+GGG 0.553053 3_1:-76263685 Msa0376230:CDS
AAAATGTGTTAAGAGTATGT+TGG 0.556141 3_1:-76262628 Msa0376230:three_prime_UTR
CAAGGCAACATCAACATCAA+GGG 0.557751 3_1:-76268569 Msa0376230:five_prime_UTR
TCAACATTAATATTAGAAGA+GGG 0.557845 3_1:+76261981 None:intergenic
GAATCTGTAATGTGGGATAG+TGG 0.558125 3_1:-76263058 Msa0376230:three_prime_UTR
TCAAACCCAACAGCTAACTC+TGG 0.559364 3_1:+76265907 None:intergenic
GGCTTAAATGGGTTCACAGA+CGG 0.559671 3_1:+76263264 None:intergenic
TGGTACAAACTCTTGCTTTG+GGG 0.562647 3_1:-76262989 Msa0376230:three_prime_UTR
GGGCTTTGAGCTAGTGACCA+TGG 0.563969 3_1:-76262969 Msa0376230:three_prime_UTR
CATGGCTTCAGCCCCTGAGT+TGG 0.564808 3_1:-76267421 Msa0376230:CDS
TGTTGATTCCTCAGATCCTG+TGG 0.566155 3_1:-76265672 Msa0376230:CDS
GGGACGGAATGGAACAGAGG+GGG 0.567127 3_1:+76266523 None:intergenic
CATATTACAAAGAACTCCAC+CGG 0.568035 3_1:+76264478 None:intergenic
CACTGACATTCACACCAGAC+AGG 0.568943 3_1:-76268383 Msa0376230:intron
TATGCTCCACAGAGCTGTGG+CGG 0.569419 3_1:+76266055 None:intergenic
AGGTTCTGTACATTATGCAT+GGG 0.569562 3_1:-76264387 Msa0376230:CDS
CTCTCAATAGTGGCTTTGCA+TGG 0.570857 3_1:+76262208 None:intergenic
TTGTAATTTAGGTCCTGCCC+AGG 0.572216 3_1:-76264549 Msa0376230:intron
TGTTTATAAATGTGATCGGA+GGG 0.575998 3_1:-76262412 Msa0376230:three_prime_UTR
ATGCTCCACAGAGCTGTGGC+GGG 0.576101 3_1:+76266056 None:intergenic
ACTGGAGCCAGTGAAGAAAA+GGG 0.576281 3_1:-76267557 Msa0376230:five_prime_UTR
ATTTGAAGATGAAAGTGGGA+AGG 0.577196 3_1:-76262935 Msa0376230:three_prime_UTR
TCTGGGGAAATAGATTATTG+TGG 0.582078 3_1:-76263328 Msa0376230:three_prime_UTR
CCAGAAGACTATGGATGGGA+AGG 0.584299 3_1:-76267496 Msa0376230:CDS
TAACAGGAATGGTTTGGAGA+AGG 0.585433 3_1:-76267469 Msa0376230:CDS
AAGAAAAGGGTTATTTATGG+GGG 0.585757 3_1:-76267544 Msa0376230:exon
GATTGTTCAGTTGACTGAAA+AGG 0.585805 3_1:-76266580 Msa0376230:CDS
ATGACATAAATAATCACGCC+TGG 0.588547 3_1:+76263293 None:intergenic
ATAGTGGCTTTGCATGGCAA+CGG 0.588983 3_1:+76262214 None:intergenic
TTGTTTATAAATGTGATCGG+AGG 0.589261 3_1:-76262413 Msa0376230:three_prime_UTR
TCACATTTGAAGATGAAAGT+GGG 0.593061 3_1:-76262939 Msa0376230:three_prime_UTR
TTAAACATCTTGAGTAACAA+AGG 0.594351 3_1:+76262732 None:intergenic
TTTGAAGATGAAAGTGGGAA+GGG 0.598264 3_1:-76262934 Msa0376230:three_prime_UTR
TCAAATGTGACAAAGTTCCA+TGG 0.601412 3_1:+76262952 None:intergenic
TCTCCACATGAAAGAAAATG+GGG 0.607718 3_1:+76268510 None:intergenic
TTACTCACCCACAGGATCTG+AGG 0.608698 3_1:+76265664 None:intergenic
TAATATTGTGAAACTTAATG+TGG 0.610663 3_1:-76262071 Msa0376230:three_prime_UTR
TAGAAGGTGCTGATAAGCAT+CGG 0.610775 3_1:-76263618 Msa0376230:CDS
ACTCTACCGTTGTTTCGGGG+TGG 0.610888 3_1:-76267386 Msa0376230:CDS
AACCAAAATCTCATCCAACT+CGG 0.613145 3_1:+76263035 None:intergenic
ATTGAGTAATTTGGGATGCA+GGG 0.616070 3_1:-76263159 Msa0376230:three_prime_UTR
GTACACTTGCATGTTGGTGA+TGG 0.618204 3_1:-76265874 Msa0376230:intron
ATTGTGACTTGAGCAATGGT+AGG 0.619747 3_1:-76261933 Msa0376230:three_prime_UTR
GTCACTCTACCGTTGTTTCG+GGG 0.620935 3_1:-76267389 Msa0376230:CDS
TTGTGGGAGAAATAGGTACC+AGG 0.621090 3_1:-76263311 Msa0376230:three_prime_UTR
GCCTGCATTTCTGAAGAATG+AGG 0.621479 3_1:-76263403 Msa0376230:CDS
TCTGGTGTGAATGTCAGTGA+GGG 0.621626 3_1:+76268387 None:intergenic
AAAGCAAGAGTTTGTACCAA+CGG 0.622544 3_1:+76262993 None:intergenic
CTATTTCCCCAGATGACTAG+TGG 0.623306 3_1:+76263338 None:intergenic
ATGGCTTTCAAACAACATGA+AGG 0.623348 3_1:+76267441 None:intergenic
CAAGCAAGCATTGCTACTGA+CGG 0.624255 3_1:+76263370 None:intergenic
TTTATTTCAACAACCCAATG+TGG 0.626443 3_1:-76267213 Msa0376230:CDS
AGTTTCACAATATTACTAGG+AGG 0.632178 3_1:+76262079 None:intergenic
TACACATTTAGTGTAAAATG+TGG 0.632403 3_1:+76262598 None:intergenic
ATGTGGGATAGTGGCCGAGT+TGG 0.633622 3_1:-76263049 Msa0376230:three_prime_UTR
AAGGCAACATCAACATCAAG+GGG 0.635113 3_1:-76268568 Msa0376230:five_prime_UTR
ATTTGTGTAACCGTTTCATG+TGG 0.640906 3_1:-76262128 Msa0376230:three_prime_UTR
CAAGTGTTCCAACATATCCA+AGG 0.643163 3_1:-76264364 Msa0376230:intron
CAATATGCTCCACAGAGCTG+TGG 0.644313 3_1:+76266052 None:intergenic
TTCTTCTATGCTCAACAGAG+GGG 0.645049 3_1:-76263684 Msa0376230:CDS
GTTTCTTCTATGCTCAACAG+AGG 0.646189 3_1:-76263686 Msa0376230:CDS
GGGACTCCAATGATTTGGTG+CGG 0.650425 3_1:-76262666 Msa0376230:three_prime_UTR
TTAAACGTGCACCTGAAGGG+AGG 0.651100 3_1:-76265709 Msa0376230:CDS
TCTTATGCAGATACATACAG+CGG 0.652959 3_1:-76263436 Msa0376230:intron
GTCTGGTGTGAATGTCAGTG+AGG 0.653488 3_1:+76268386 None:intergenic
AGTATCCCGCCACAGCTCTG+TGG 0.654087 3_1:-76266061 Msa0376230:CDS
TGTGAAACTTAATGTGGACG+AGG 0.656167 3_1:-76262065 Msa0376230:three_prime_UTR
GGGAAGGCGAGTAACAGGAA+TGG 0.657558 3_1:-76267480 Msa0376230:CDS
GGGTTCACAAAATCAACATG+CGG 0.658739 3_1:+76263661 None:intergenic
ATATCTAAGGCATTAAGACC+CGG 0.667528 3_1:-76264497 Msa0376230:CDS
AAAACTCTTTCAACAACCCG+AGG 0.667762 3_1:-76262039 Msa0376230:three_prime_UTR
CCTCGTGTACACTTGCATGT+TGG 0.668273 3_1:-76265880 Msa0376230:CDS
TTTGATTGTGACTTGAGCAA+TGG 0.670072 3_1:-76261937 Msa0376230:three_prime_UTR
AGAAAAGTCACTGTACCAAG+AGG 0.670694 3_1:-76266734 Msa0376230:CDS
AATGCCAGAAGACTATGGAT+GGG 0.672149 3_1:-76267500 Msa0376230:CDS
CCAACATGCAAGTGTACACG+AGG 0.673468 3_1:+76265880 None:intergenic
AGTAGCAGACGAGTAAGCAA+CGG 0.682687 3_1:-76262823 Msa0376230:three_prime_UTR
TGAGAACCACCCCGAAACAA+CGG 0.682894 3_1:+76267380 None:intergenic
GTTGATTCCTCAGATCCTGT+GGG 0.684990 3_1:-76265671 Msa0376230:intron
ATATTACAAAGAACTCCACC+GGG 0.685339 3_1:+76264479 None:intergenic
GGGGACGGAATGGAACAGAG+GGG 0.690224 3_1:+76266522 None:intergenic
AAGGTGCTGATAAGCATCGG+AGG 0.691606 3_1:-76263615 Msa0376230:CDS
TCTTAGGTTCTATAACTCAG+AGG 0.692345 3_1:-76263590 Msa0376230:intron
ACAATTGGCCTCCAACTCAG+GGG 0.704373 3_1:+76267410 None:intergenic
TCTAAGGCATTAAGACCCGG+TGG 0.707720 3_1:-76264494 Msa0376230:CDS
CATTTCTGAAGAATGAGGTG+AGG 0.708001 3_1:-76263398 Msa0376230:CDS
ATTGTACCACTAGTCATCTG+GGG 0.716756 3_1:-76263344 Msa0376230:three_prime_UTR
ATATTGCCCAGAGTTCAACA+AGG 0.749555 3_1:+76263243 None:intergenic
GGGTGTTGTTGATAGAAACG+CGG 0.762980 3_1:+76268407 None:intergenic
AGGCAACATCAACATCAAGG+GGG 0.776880 3_1:-76268567 Msa0376230:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAATATTAATTAATCTAT+GGG + chr3_1:76262242-76262261 None:intergenic 10.0%
!! TTGTAATATTAATTAATCTA+TGG + chr3_1:76262243-76262262 None:intergenic 10.0%
!!! TAGTTCAATATAAATATTTT+AGG + chr3_1:76265827-76265846 None:intergenic 10.0%
!! AAATAAGTAAATACAATATA+TGG + chr3_1:76266955-76266974 None:intergenic 10.0%
!!! ACTTATTTAACTTTATTTAT+TGG - chr3_1:76266967-76266986 Msa0376230:intron 10.0%
!! CTTAATTTAATAGAGTTTAA+TGG - chr3_1:76261971-76261990 Msa0376230:three_prime_UTR 15.0%
!! GTAATATTAATTAATCTATG+GGG + chr3_1:76262241-76262260 None:intergenic 15.0%
!!! TCACTTTTATTTTATATTTC+AGG - chr3_1:76262591-76262610 Msa0376230:three_prime_UTR 15.0%
!!! ATATCTTTGAAAATAACTTT+TGG - chr3_1:76263554-76263573 Msa0376230:intron 15.0%
!!! TAATTTTTATGTGTATATGA+CGG - chr3_1:76263677-76263696 Msa0376230:CDS 15.0%
!! AAAATATTAAAGAATAGAGT+AGG + chr3_1:76264205-76264224 None:intergenic 15.0%
!!! AATTTTTATGATGTTATTTC+AGG - chr3_1:76264383-76264402 Msa0376230:CDS 15.0%
!! TGAGTAATTTAAATTCAAAA+TGG - chr3_1:76264859-76264878 Msa0376230:intron 15.0%
!! TCTGATTTATCTATTTATTT+AGG + chr3_1:76265252-76265271 None:intergenic 15.0%
!!! TTCTTTAAAAGTAAAATCAA+AGG + chr3_1:76266226-76266245 None:intergenic 15.0%
!!! CTTTGTTATAATTGAATTTT+TGG - chr3_1:76266618-76266637 Msa0376230:CDS 15.0%
!!! TTTTGTAATTCAATATACAT+AGG + chr3_1:76267620-76267639 None:intergenic 15.0%
!!! TAAACAAAATATAACCTTTT+AGG - chr3_1:76267992-76268011 Msa0376230:intron 15.0%
!! CATGAAATAATTAATGTATT+TGG + chr3_1:76268056-76268075 None:intergenic 15.0%
!!! TAAACAAAAAACAACTTTTT+AGG + chr3_1:76268081-76268100 None:intergenic 15.0%
!!! TTTTTGTTTATAAATGTGAT+CGG - chr3_1:76268091-76268110 Msa0376230:intron 15.0%
!!! GGGTATTTTCTTAATATAAT+TGG + chr3_1:76262333-76262352 None:intergenic 20.0%
!! TCAAATAAGAAAACAAAACA+GGG + chr3_1:76262353-76262372 None:intergenic 20.0%
!! ATCAAATAAGAAAACAAAAC+AGG + chr3_1:76262354-76262373 None:intergenic 20.0%
!!! TTACATGTGATTTTGTTTTT+TGG - chr3_1:76262756-76262775 Msa0376230:three_prime_UTR 20.0%
!!! TACATGTGATTTTGTTTTTT+GGG - chr3_1:76262757-76262776 Msa0376230:three_prime_UTR 20.0%
!!! TTTTTTTACAGAAAAATCAG+AGG - chr3_1:76263265-76263284 Msa0376230:three_prime_UTR 20.0%
!! ACACATAAAAATTACATACT+TGG + chr3_1:76263671-76263690 None:intergenic 20.0%
!! GAATAAAAAGAGAACAATAT+AGG + chr3_1:76263828-76263847 None:intergenic 20.0%
!!! TTTTTACAGTCATTAACATA+TGG - chr3_1:76263883-76263902 Msa0376230:intron 20.0%
!!! TTTTACAGTCATTAACATAT+GGG - chr3_1:76263884-76263903 Msa0376230:intron 20.0%
!!! TCAAAAGACTTTACATTTTT+GGG + chr3_1:76264009-76264028 None:intergenic 20.0%
!!! ATCAAAAGACTTTACATTTT+TGG + chr3_1:76264010-76264029 None:intergenic 20.0%
!! CATAAAAATTATTTAGCAGA+CGG + chr3_1:76264373-76264392 None:intergenic 20.0%
!! AAACAATATGAAAGAAATCA+CGG + chr3_1:76265687-76265706 None:intergenic 20.0%
!!! TTTCTTTCATATTGTTTTGT+TGG - chr3_1:76265690-76265709 Msa0376230:CDS 20.0%
!!! ATTTTAGGAACAAAAATTCA+GGG + chr3_1:76265812-76265831 None:intergenic 20.0%
!!! TATTTTAGGAACAAAAATTC+AGG + chr3_1:76265813-76265832 None:intergenic 20.0%
!! CATTACATGAAATTAATAAG+TGG + chr3_1:76265873-76265892 None:intergenic 20.0%
!!! CAATATCACTTTTGTAATTT+AGG - chr3_1:76265947-76265966 Msa0376230:intron 20.0%
!! TTAGATATAGTCTCAAAAAA+TGG + chr3_1:76265998-76266017 None:intergenic 20.0%
!!! ATTTTTTGAGACTATATCTA+AGG - chr3_1:76265997-76266016 Msa0376230:intron 20.0%
!!! ATTGAATTTTTGGTTTAAGA+AGG - chr3_1:76266628-76266647 Msa0376230:intron 20.0%
!!! ACTAAACATGATTGTAATTT+TGG - chr3_1:76266726-76266745 Msa0376230:CDS 20.0%
!!! AAATTTTGCAACAAAATATC+AGG - chr3_1:76266993-76267012 Msa0376230:intron 20.0%
!! TATTGATGTATTGAGTAATT+TGG - chr3_1:76267339-76267358 Msa0376230:intron 20.0%
!! ATTGATGTATTGAGTAATTT+GGG - chr3_1:76267340-76267359 Msa0376230:intron 20.0%
!! GAATTACAAAATAGTTATGA+TGG - chr3_1:76267629-76267648 Msa0376230:intron 20.0%
!!! CACATTTTTAAACACTATAT+AGG + chr3_1:76267867-76267886 None:intergenic 20.0%
!!! ATTTTGTTTATAAATGTGAC+CGG + chr3_1:76267982-76268001 None:intergenic 20.0%
!!! ATTCTAAAATTTTGAATGAG+TGG + chr3_1:76268187-76268206 None:intergenic 20.0%
!! TTAAGTTTCACAATATTACT+AGG + chr3_1:76268434-76268453 None:intergenic 20.0%
!! TAATATTGTGAAACTTAATG+TGG - chr3_1:76268436-76268455 Msa0376230:five_prime_UTR 20.0%
!! TCAACATTAATATTAGAAGA+GGG + chr3_1:76268529-76268548 None:intergenic 20.0%
!! TTCAACATTAATATTAGAAG+AGG + chr3_1:76268530-76268549 None:intergenic 20.0%
!! AATGGCATAGTGTATTTTAT+TGG - chr3_1:76261911-76261930 Msa0376230:three_prime_UTR 25.0%
!! ATGGCATAGTGTATTTTATT+GGG - chr3_1:76261912-76261931 Msa0376230:three_prime_UTR 25.0%
! TTTATTGTTGATACTTTGCT+TGG - chr3_1:76262730-76262749 Msa0376230:three_prime_UTR 25.0%
!!! ACATGTGATTTTGTTTTTTG+GGG - chr3_1:76262758-76262777 Msa0376230:three_prime_UTR 25.0%
!!! TTAATTTTTTGTGTGACAAC+TGG - chr3_1:76262909-76262928 Msa0376230:three_prime_UTR 25.0%
! TGTATTAATTATACAGAGAC+TGG - chr3_1:76262932-76262951 Msa0376230:three_prime_UTR 25.0%
! TGAAGAAAAGGGTTATTTAT+GGG - chr3_1:76262961-76262980 Msa0376230:three_prime_UTR 25.0%
!! AAACAAAAGATTGTTGTTAG+TGG + chr3_1:76263231-76263250 None:intergenic 25.0%
! ATCAAACTTACTACATATTG+AGG - chr3_1:76263612-76263631 Msa0376230:CDS 25.0%
! GTTAATCACTTCTCATTTAT+AGG + chr3_1:76263853-76263872 None:intergenic 25.0%
!!! AAAAGACTTTACATTTTTGG+GGG + chr3_1:76264007-76264026 None:intergenic 25.0%
!! CAAAAGACTTTACATTTTTG+GGG + chr3_1:76264008-76264027 None:intergenic 25.0%
! ACAAAATATTGAAGTAACGT+TGG - chr3_1:76264079-76264098 Msa0376230:intron 25.0%
! TTATCATCTTGACAATGTAT+TGG - chr3_1:76264232-76264251 Msa0376230:intron 25.0%
!!! TTATTTCAGGTTTTAGTTGT+TGG - chr3_1:76264396-76264415 Msa0376230:CDS 25.0%
! TATTTGTGAGATAGATAAGA+TGG - chr3_1:76264479-76264498 Msa0376230:CDS 25.0%
! ATGGTTATTGATGTAAGTTA+TGG - chr3_1:76264498-76264517 Msa0376230:CDS 25.0%
! ATGAAATGAACTTATTGCAA+TGG - chr3_1:76264548-76264567 Msa0376230:intron 25.0%
!!! TATTGCAATGGTTATTTTGT+AGG - chr3_1:76264560-76264579 Msa0376230:intron 25.0%
!! TTACTGGTTACAAACTATTA+AGG - chr3_1:76264716-76264735 Msa0376230:intron 25.0%
! CAGTAAATAATGCACATTAT+TGG - chr3_1:76264897-76264916 Msa0376230:intron 25.0%
! CAGTAAATAATGCACATTAT+TGG - chr3_1:76264897-76264916 Msa0376230:intron 25.0%
!! TCTATATTTTCTCACTAGTA+TGG - chr3_1:76265038-76265057 Msa0376230:intron 25.0%
! AAATTGCTTAACTAGATCAT+TGG - chr3_1:76265061-76265080 Msa0376230:intron 25.0%
!!! TGTGGGTTTTAGATAAAAAA+AGG - chr3_1:76265124-76265143 Msa0376230:intron 25.0%
!!! AGATACTGATTCATATTTGT+AGG - chr3_1:76265209-76265228 Msa0376230:intron 25.0%
!!! GATACTGATTCATATTTGTA+GGG - chr3_1:76265210-76265229 Msa0376230:intron 25.0%
! GATACTCGAAAATTATAAAG+TGG - chr3_1:76265328-76265347 Msa0376230:intron 25.0%
! GAGATACTATTAGATATTGA+AGG - chr3_1:76265388-76265407 Msa0376230:intron 25.0%
!! AGTTAGTTATGTTAGTTTCA+GGG + chr3_1:76265437-76265456 None:intergenic 25.0%
!! TAGTTAGTTATGTTAGTTTC+AGG + chr3_1:76265438-76265457 None:intergenic 25.0%
!!! GTATCTTTTTTGTCTTTGAT+GGG + chr3_1:76265480-76265499 None:intergenic 25.0%
!!! AGTATCTTTTTTGTCTTTGA+TGG + chr3_1:76265481-76265500 None:intergenic 25.0%
! CTGAAATTTCTCATAAATGA+AGG + chr3_1:76265587-76265606 None:intergenic 25.0%
! ATGACTTTAGATTGTTTCAT+TGG - chr3_1:76265609-76265628 Msa0376230:intron 25.0%
! AACAAAAATTCAGGGAAAAT+CGG + chr3_1:76265804-76265823 None:intergenic 25.0%
! TAAAAATAACCAACCAGAAA+AGG + chr3_1:76265916-76265935 None:intergenic 25.0%
! TTTAAATGTTTCTCGACAAA+TGG + chr3_1:76266101-76266120 None:intergenic 25.0%
! ATTTGTCGAGAAACATTTAA+AGG - chr3_1:76266100-76266119 Msa0376230:CDS 25.0%
! GTTTACACTATTCAAATTAC+TGG - chr3_1:76266170-76266189 Msa0376230:intron 25.0%
!!! TAAGGGTAATTTTTTTACAG+TGG - chr3_1:76266287-76266306 Msa0376230:intron 25.0%
!!! AAGGGTAATTTTTTTACAGT+GGG - chr3_1:76266288-76266307 Msa0376230:intron 25.0%
!! ACCATAATCACAAATTTTGT+GGG + chr3_1:76266371-76266390 None:intergenic 25.0%
!! AACCATAATCACAAATTTTG+TGG + chr3_1:76266372-76266391 None:intergenic 25.0%
! ACAAAATTTGTGATTATGGT+TGG - chr3_1:76266371-76266390 Msa0376230:intron 25.0%
!! TTTGTAACATTTTCAACAAG+TGG + chr3_1:76266441-76266460 None:intergenic 25.0%
!! TTTGTAACATTTTCAACAAG+TGG + chr3_1:76266441-76266460 None:intergenic 25.0%
! TATGTATCTGCATAAGAAAA+GGG + chr3_1:76267068-76267087 None:intergenic 25.0%
!!! ATATTATTAGCCTCTTTTTG+TGG - chr3_1:76267283-76267302 Msa0376230:intron 25.0%
! TTACTCAATACATCAATAAC+TGG + chr3_1:76267337-76267356 None:intergenic 25.0%
! TTAAACATCTTGAGTAACAA+AGG + chr3_1:76267778-76267797 None:intergenic 25.0%
! TATCTAATACACTCTTTGTA+TGG - chr3_1:76267820-76267839 Msa0376230:intron 25.0%
! ATCTAATACACTCTTTGTAT+GGG - chr3_1:76267821-76267840 Msa0376230:intron 25.0%
!! AAAATGTGTTAAGAGTATGT+TGG - chr3_1:76267879-76267898 Msa0376230:intron 25.0%
! TACACATTTAGTGTAAAATG+TGG + chr3_1:76267912-76267931 None:intergenic 25.0%
! AGTCATTCAATAAACCTAAA+AGG + chr3_1:76268009-76268028 None:intergenic 25.0%
TTCTCCACATGAAAGAAAAT+GGG + chr3_1:76262001-76262020 None:intergenic 30.0%
ATTCTCCACATGAAAGAAAA+TGG + chr3_1:76262002-76262021 None:intergenic 30.0%
ATCAACATGTATGTACTTGA+TGG - chr3_1:76262376-76262395 Msa0376230:three_prime_UTR 30.0%
AAATTAAGGCAATTGTAGCA+TGG + chr3_1:76262412-76262431 None:intergenic 30.0%
! CTTTTAAGCTTTGCTAAACT+GGG - chr3_1:76262705-76262724 Msa0376230:three_prime_UTR 30.0%
!!! CATGTGATTTTGTTTTTTGG+GGG - chr3_1:76262759-76262778 Msa0376230:three_prime_UTR 30.0%
TCATTCTCTGTTCTGTTATT+TGG - chr3_1:76262799-76262818 Msa0376230:three_prime_UTR 30.0%
! TAAATAACCCTTTTCTTCAC+TGG + chr3_1:76262960-76262979 None:intergenic 30.0%
GTGAAGAAAAGGGTTATTTA+TGG - chr3_1:76262960-76262979 Msa0376230:three_prime_UTR 30.0%
GAAGAAAAGGGTTATTTATG+GGG - chr3_1:76262962-76262981 Msa0376230:three_prime_UTR 30.0%
AAGAAAAGGGTTATTTATGG+GGG - chr3_1:76262963-76262982 Msa0376230:three_prime_UTR 30.0%
GAAAGGAAATGGGAAATATA+TGG + chr3_1:76263204-76263223 None:intergenic 30.0%
! AAAGATTGTTGTTAGTGGAA+TGG + chr3_1:76263226-76263245 None:intergenic 30.0%
TTTATTTCAACAACCCAATG+TGG - chr3_1:76263294-76263313 Msa0376230:three_prime_UTR 30.0%
TTCATGTATACTTGCAACTT+TGG - chr3_1:76263355-76263374 Msa0376230:three_prime_UTR 30.0%
! TTGAAAATAACTTTTGGCCA+AGG - chr3_1:76263560-76263579 Msa0376230:intron 30.0%
! AACATTTAGTTTATCCTCCT+TGG + chr3_1:76263580-76263599 None:intergenic 30.0%
CTTCTCTACTTTGATTGAAT+GGG + chr3_1:76263742-76263761 None:intergenic 30.0%
TCTTCTCTACTTTGATTGAA+TGG + chr3_1:76263743-76263762 None:intergenic 30.0%
ACAGTTCTCTATTATCACTT+AGG - chr3_1:76264117-76264136 Msa0376230:intron 30.0%
CAGTTCTCTATTATCACTTA+GGG - chr3_1:76264118-76264137 Msa0376230:intron 30.0%
AGTTCTCTATTATCACTTAG+GGG - chr3_1:76264119-76264138 Msa0376230:intron 30.0%
!! TCTTGACAATGTATTGGTTA+TGG - chr3_1:76264238-76264257 Msa0376230:intron 30.0%
GAGACTGACTAAAATTTGAA+AGG - chr3_1:76264298-76264317 Msa0376230:intron 30.0%
AAAAATTATTTAGCAGACGG+TGG + chr3_1:76264370-76264389 None:intergenic 30.0%
!! TGGTTATTTTGTAGGTTTCT+AGG - chr3_1:76264568-76264587 Msa0376230:intron 30.0%
CAGTAAATTAAAGCCATAGT+TGG + chr3_1:76264702-76264721 None:intergenic 30.0%
!! CAACTATGGCTTTAATTTAC+TGG - chr3_1:76264700-76264719 Msa0376230:intron 30.0%
ATTCAATAGCTGGCAAAAAT+GGG + chr3_1:76264775-76264794 None:intergenic 30.0%
AATTCAATAGCTGGCAAAAA+TGG + chr3_1:76264776-76264795 None:intergenic 30.0%
CGTTTAAGAAATTCAATAGC+TGG + chr3_1:76264785-76264804 None:intergenic 30.0%
ATCTGAGGAATCAACAATTA+CGG + chr3_1:76264831-76264850 None:intergenic 30.0%
AATTTAAATTACTCACCCAC+AGG + chr3_1:76264854-76264873 None:intergenic 30.0%
! ATGAAAAAAGTCGTGTTTTG+AGG - chr3_1:76265011-76265030 Msa0376230:intron 30.0%
TGTGTTAGATTGAGATACAA+GGG + chr3_1:76265093-76265112 None:intergenic 30.0%
TGGTCTAATGAGATAAACTA+AGG - chr3_1:76265348-76265367 Msa0376230:intron 30.0%
ATATTGAAGGAGTTTGAAAG+AGG - chr3_1:76265401-76265420 Msa0376230:intron 30.0%
! GTTAGTTATGTTAGTTTCAG+GGG + chr3_1:76265436-76265455 None:intergenic 30.0%
!! TTTCATATTGTTTTGTTGGC+TGG - chr3_1:76265694-76265713 Msa0376230:CDS 30.0%
ACATGTAGAAACAGAAAACT+TGG + chr3_1:76266259-76266278 None:intergenic 30.0%
TCCCACAAAATTTGTGATTA+TGG - chr3_1:76266367-76266386 Msa0376230:intron 30.0%
! AGATTTTTACTTGCCTAGTT+TGG - chr3_1:76266655-76266674 Msa0376230:intron 30.0%
ATCATGTTTAGTAACTGTCA+GGG + chr3_1:76266718-76266737 None:intergenic 30.0%
AATCATGTTTAGTAACTGTC+AGG + chr3_1:76266719-76266738 None:intergenic 30.0%
! TTGGTTCATCTTGATAGTAT+TGG - chr3_1:76266745-76266764 Msa0376230:CDS 30.0%
TGCTTATTGTATTCCTTTCT+TGG - chr3_1:76266779-76266798 Msa0376230:intron 30.0%
! AACTTTTCAATGGGATTGAT+GGG + chr3_1:76266870-76266889 None:intergenic 30.0%
! TAACTTTTCAATGGGATTGA+TGG + chr3_1:76266871-76266890 None:intergenic 30.0%
AATCCCATTGAAAAGTTAGA+AGG - chr3_1:76266873-76266892 Msa0376230:intron 30.0%
ATAACTCAGAGGTAAGTATA+TGG - chr3_1:76266928-76266947 Msa0376230:intron 30.0%
GTATGTATCTGCATAAGAAA+AGG + chr3_1:76267069-76267088 None:intergenic 30.0%
TAGATTATTGTGGGAGAAAT+AGG - chr3_1:76267189-76267208 Msa0376230:intron 30.0%
TTAAACACAACCACAAAAAG+AGG + chr3_1:76267296-76267315 None:intergenic 30.0%
ACATAGCAAGTGTGTTTAAA+TGG - chr3_1:76267419-76267438 Msa0376230:CDS 30.0%
! CTTTTGTGAATCTGTAATGT+GGG - chr3_1:76267442-76267461 Msa0376230:CDS 30.0%
!!! TGAGATTTTGGTTGAATTTG+CGG - chr3_1:76267482-76267501 Msa0376230:CDS 30.0%
TCACATTTGAAGATGAAAGT+GGG - chr3_1:76267568-76267587 Msa0376230:intron 30.0%
TGAGTAACAAAGGAAATTCA+TGG + chr3_1:76267768-76267787 None:intergenic 30.0%
ATCTTTCAATATACTCTCTC+CGG - chr3_1:76267960-76267979 Msa0376230:intron 30.0%
TTGTTTATAAATGTGATCGG+AGG - chr3_1:76268094-76268113 Msa0376230:intron 30.0%
TGTTTATAAATGTGATCGGA+GGG - chr3_1:76268095-76268114 Msa0376230:intron 30.0%
! TACCAAAACTTTTTGTCGAA+AGG + chr3_1:76268360-76268379 None:intergenic 30.0%
AGTTTCACAATATTACTAGG+AGG + chr3_1:76268431-76268450 None:intergenic 30.0%
TCCAATTAACTAATCACAAC+CGG + chr3_1:76268498-76268517 None:intergenic 30.0%
GAATTACATGCAATCTCTTA+TGG - chr3_1:76268547-76268566 Msa0376230:five_prime_UTR 30.0%
! GCATAGTGTATTTTATTGGG+TGG - chr3_1:76261915-76261934 Msa0376230:three_prime_UTR 35.0%
! AATCCCCATTTTCTTTCATG+TGG - chr3_1:76261994-76262013 Msa0376230:three_prime_UTR 35.0%
TCTCCACATGAAAGAAAATG+GGG + chr3_1:76262000-76262019 None:intergenic 35.0%
GTTCTTTGATTGCTTCTTCT+GGG + chr3_1:76262066-76262085 None:intergenic 35.0%
AGTTCTTTGATTGCTTCTTC+TGG + chr3_1:76262067-76262086 None:intergenic 35.0%
AAAAACGAAACAGAGAGAAG+AGG + chr3_1:76262166-76262185 None:intergenic 35.0%
TTTATTGAGCGCAACTACTA+GGG + chr3_1:76262214-76262233 None:intergenic 35.0%
! TTAATTTTCCCCCCTTTTTC+TGG - chr3_1:76262546-76262565 Msa0376230:three_prime_UTR 35.0%
AAAACAAGCCACCAGAAAAA+GGG + chr3_1:76262560-76262579 None:intergenic 35.0%
! GCTTTTAAGCTTTGCTAAAC+TGG - chr3_1:76262704-76262723 Msa0376230:three_prime_UTR 35.0%
ATGGCTTTCAAACAACATGA+AGG + chr3_1:76263069-76263088 None:intergenic 35.0%
! TTCATGTTGTTTGAAAGCCA+TGG - chr3_1:76263068-76263087 Msa0376230:three_prime_UTR 35.0%
TAGTGGAATGGAAAGGAAAT+GGG + chr3_1:76263214-76263233 None:intergenic 35.0%
TTAGTGGAATGGAAAGGAAA+TGG + chr3_1:76263215-76263234 None:intergenic 35.0%
! TTGTTGTTAGTGGAATGGAA+AGG + chr3_1:76263221-76263240 None:intergenic 35.0%
!! CAATCTTTTGTTTCATCGTG+TGG - chr3_1:76263238-76263257 Msa0376230:three_prime_UTR 35.0%
TATGCAAAATAACAGTCACC+TGG + chr3_1:76263320-76263339 None:intergenic 35.0%
!!! GGTGACTGTTATTTTGCATA+TGG - chr3_1:76263320-76263339 Msa0376230:three_prime_UTR 35.0%
ATATTCATCCTTCTCCATGA+AGG + chr3_1:76263501-76263520 None:intergenic 35.0%
TTCATGGAGAAGGATGAATA+TGG - chr3_1:76263500-76263519 Msa0376230:intron 35.0%
TCATGGAGAAGGATGAATAT+GGG - chr3_1:76263501-76263520 Msa0376230:intron 35.0%
! AAAATAACTTTTGGCCAAGG+AGG - chr3_1:76263563-76263582 Msa0376230:intron 35.0%
! TTTGGTGTGTGTCTATCATT+AGG - chr3_1:76263711-76263730 Msa0376230:intron 35.0%
GGAAAGTTCTTGTACTTGAT+GGG - chr3_1:76263905-76263924 Msa0376230:intron 35.0%
GATTGTTCAGTTGACTGAAA+AGG - chr3_1:76263927-76263946 Msa0376230:intron 35.0%
TGATCTGATCATCAGTGTAT+TGG - chr3_1:76264026-76264045 Msa0376230:intron 35.0%
GATCTGATCATCAGTGTATT+GGG - chr3_1:76264027-76264046 Msa0376230:intron 35.0%
TTGAGACTGCTGAATATCAA+AGG + chr3_1:76264171-76264190 None:intergenic 35.0%
! CCATACACATATAAGAGCAT+TGG + chr3_1:76264266-76264285 None:intergenic 35.0%
CCAATGCTCTTATATGTGTA+TGG - chr3_1:76264263-76264282 Msa0376230:intron 35.0%
ATGCTCTTATATGTGTATGG+AGG - chr3_1:76264266-76264285 Msa0376230:intron 35.0%
TGGAAACAGTATGGGAAAAA+AGG + chr3_1:76264350-76264369 None:intergenic 35.0%
!!! TTTCAGGTTTTAGTTGTTGG+TGG - chr3_1:76264399-76264418 Msa0376230:CDS 35.0%
!!! TTTTTTCCAGAGTTAGCTGT+TGG - chr3_1:76264594-76264613 Msa0376230:intron 35.0%
! TTTTTCCAGAGTTAGCTGTT+GGG - chr3_1:76264595-76264614 Msa0376230:intron 35.0%
!! GTTTGTTATCATGCCAACTA+TGG - chr3_1:76264686-76264705 Msa0376230:intron 35.0%
!!! AAAAAAGTCGTGTTTTGAGG+AGG - chr3_1:76265014-76265033 Msa0376230:intron 35.0%
TAGATTGAGATACAAGGGTT+GGG + chr3_1:76265088-76265107 None:intergenic 35.0%
TTAGATTGAGATACAAGGGT+TGG + chr3_1:76265089-76265108 None:intergenic 35.0%
GTGTGTTAGATTGAGATACA+AGG + chr3_1:76265094-76265113 None:intergenic 35.0%
! TAACACACTTTTCGAAGTTG+TGG - chr3_1:76265106-76265125 Msa0376230:intron 35.0%
! AACACACTTTTCGAAGTTGT+GGG - chr3_1:76265107-76265126 Msa0376230:intron 35.0%
AACAGAGCTGATATGAATAG+TGG + chr3_1:76265543-76265562 None:intergenic 35.0%
!! TAGATTCTTCCTTTTCTGGT+TGG - chr3_1:76265904-76265923 Msa0376230:CDS 35.0%
! ATATCTAAGGCATTAAGACC+CGG - chr3_1:76266010-76266029 Msa0376230:intron 35.0%
ATATTACAAAGAACTCCACC+GGG + chr3_1:76266031-76266050 None:intergenic 35.0%
CATATTACAAAGAACTCCAC+CGG + chr3_1:76266032-76266051 None:intergenic 35.0%
! GTAATATGGCAGAAAGTATG+TGG - chr3_1:76266044-76266063 Msa0376230:CDS 35.0%
AAGGTTCTGTACATTATGCA+TGG - chr3_1:76266119-76266138 Msa0376230:intron 35.0%
AGGTTCTGTACATTATGCAT+GGG - chr3_1:76266120-76266139 Msa0376230:intron 35.0%
AAACTCTACCTTGGATATGT+TGG + chr3_1:76266154-76266173 None:intergenic 35.0%
GAATAGTGTAAACTCTACCT+TGG + chr3_1:76266163-76266182 None:intergenic 35.0%
TTCTACATGTTGTGAGAGTA+AGG - chr3_1:76266269-76266288 Msa0376230:intron 35.0%
TCTACATGTTGTGAGAGTAA+GGG - chr3_1:76266270-76266289 Msa0376230:intron 35.0%
ATTACTGAAGATCCATCAGT+GGG + chr3_1:76266341-76266360 None:intergenic 35.0%
AATTACTGAAGATCCATCAG+TGG + chr3_1:76266342-76266361 None:intergenic 35.0%
! GTGTTGCTGGAAAAATTCAT+AGG - chr3_1:76266395-76266414 Msa0376230:intron 35.0%
TTTCACATTACCTTCTTGAG+AGG - chr3_1:76266590-76266609 Msa0376230:CDS 35.0%
ACTAGGCAAGTAAAAATCTC+AGG + chr3_1:76266654-76266673 None:intergenic 35.0%
!!! TTGGCATTTTGGAACAGTAT+AGG - chr3_1:76266674-76266693 Msa0376230:intron 35.0%
!!! TGGCATTTTGGAACAGTATA+GGG - chr3_1:76266675-76266694 Msa0376230:intron 35.0%
TTTCTTCTATGCTCAACAGA+GGG - chr3_1:76266822-76266841 Msa0376230:intron 35.0%
! ACTTTTCAATGGGATTGATG+GGG + chr3_1:76266869-76266888 None:intergenic 35.0%
! GCACCTTCTAACTTTTCAAT+GGG + chr3_1:76266879-76266898 None:intergenic 35.0%
! AGCACCTTCTAACTTTTCAA+TGG + chr3_1:76266880-76266899 None:intergenic 35.0%
TCTTAGGTTCTATAACTCAG+AGG - chr3_1:76266917-76266936 Msa0376230:intron 35.0%
TCTTATGCAGATACATACAG+CGG - chr3_1:76267071-76267090 Msa0376230:intron 35.0%
TATTGTACCACTAGTCATCT+GGG - chr3_1:76267162-76267181 Msa0376230:intron 35.0%
TCTGGGGAAATAGATTATTG+TGG - chr3_1:76267179-76267198 Msa0376230:intron 35.0%
CTGGGGAAATAGATTATTGT+GGG - chr3_1:76267180-76267199 Msa0376230:intron 35.0%
ATGACATAAATAATCACGCC+TGG + chr3_1:76267217-76267236 None:intergenic 35.0%
GAGTTCAACAAGGCTTAAAT+GGG + chr3_1:76267257-76267276 None:intergenic 35.0%
AGAGTTCAACAAGGCTTAAA+TGG + chr3_1:76267258-76267277 None:intergenic 35.0%
!! ATTTAAGCCTTGTTGAACTC+TGG - chr3_1:76267257-76267276 Msa0376230:intron 35.0%
!! TTTAAGCCTTGTTGAACTCT+GGG - chr3_1:76267258-76267277 Msa0376230:intron 35.0%
! TATTGAGTAATTTGGGATGC+AGG - chr3_1:76267347-76267366 Msa0376230:intron 35.0%
! ATTGAGTAATTTGGGATGCA+GGG - chr3_1:76267348-76267367 Msa0376230:intron 35.0%
! GCTTTTGTGAATCTGTAATG+TGG - chr3_1:76267441-76267460 Msa0376230:CDS 35.0%
AACCAAAATCTCATCCAACT+CGG + chr3_1:76267475-76267494 None:intergenic 35.0%
AAAGCAAGAGTTTGTACCAA+CGG + chr3_1:76267517-76267536 None:intergenic 35.0%
TTGGTACAAACTCTTGCTTT+GGG - chr3_1:76267517-76267536 Msa0376230:CDS 35.0%
TCAAATGTGACAAAGTTCCA+TGG + chr3_1:76267558-76267577 None:intergenic 35.0%
GTCACATTTGAAGATGAAAG+TGG - chr3_1:76267567-76267586 Msa0376230:intron 35.0%
ATTTGAAGATGAAAGTGGGA+AGG - chr3_1:76267572-76267591 Msa0376230:intron 35.0%
TTTGAAGATGAAAGTGGGAA+GGG - chr3_1:76267573-76267592 Msa0376230:intron 35.0%
GATGGTGAGAGTAAAATCTA+TGG - chr3_1:76267647-76267666 Msa0376230:intron 35.0%
AATCAAAAGTCAGAAGTTGC+AGG - chr3_1:76268262-76268281 Msa0376230:intron 35.0%
AGTATCCAAACTCTCAATAG+TGG + chr3_1:76268312-76268331 None:intergenic 35.0%
! GTCGAAAGGTCTTGTATAAT+TGG + chr3_1:76268346-76268365 None:intergenic 35.0%
! GACCTTTCGACAAAAAGTTT+TGG - chr3_1:76268355-76268374 Msa0376230:intron 35.0%
ATTTGTGTAACCGTTTCATG+TGG - chr3_1:76268379-76268398 Msa0376230:intron 35.0%
CAGACGATATTTACACTCAT+AGG - chr3_1:76268403-76268422 Msa0376230:five_prime_UTR 35.0%
TTTGATTGTGACTTGAGCAA+TGG - chr3_1:76268570-76268589 Msa0376230:five_prime_UTR 35.0%
! GTGTATTTTATTGGGTGGCA+AGG - chr3_1:76261920-76261939 Msa0376230:three_prime_UTR 40.0%
CAAGGCAACATCAACATCAA+GGG - chr3_1:76261938-76261957 Msa0376230:three_prime_UTR 40.0%
AAGGCAACATCAACATCAAG+GGG - chr3_1:76261939-76261958 Msa0376230:three_prime_UTR 40.0%
! GCTTCTTCTGGGAACAAAAA+TGG + chr3_1:76262055-76262074 None:intergenic 40.0%
GTTTATTGAGCGCAACTACT+AGG + chr3_1:76262215-76262234 None:intergenic 40.0%
AAACAAGCCACCAGAAAAAG+GGG + chr3_1:76262559-76262578 None:intergenic 40.0%
CAAAACAAGCCACCAGAAAA+AGG + chr3_1:76262561-76262580 None:intergenic 40.0%
! TGACAAAGAGTACAGAACAC+AGG + chr3_1:76262620-76262639 None:intergenic 40.0%
TGAGCTTATGTCTAAGCGAA+AGG - chr3_1:76262848-76262867 Msa0376230:three_prime_UTR 40.0%
GCATTCCAAACCTCTTTCTA+CGG + chr3_1:76262992-76263011 None:intergenic 40.0%
! TTTGGAATGCCAGAAGACTA+TGG - chr3_1:76263002-76263021 Msa0376230:three_prime_UTR 40.0%
AATGCCAGAAGACTATGGAT+GGG - chr3_1:76263007-76263026 Msa0376230:three_prime_UTR 40.0%
! TAACAGGAATGGTTTGGAGA+AGG - chr3_1:76263038-76263057 Msa0376230:three_prime_UTR 40.0%
AACAACGGTAGAGTGACAAT+TGG + chr3_1:76263115-76263134 None:intergenic 40.0%
TTGTCACTCTACCGTTGTTT+CGG - chr3_1:76263116-76263135 Msa0376230:three_prime_UTR 40.0%
CATGGAGAAGGATGAATATG+GGG - chr3_1:76263502-76263521 Msa0376230:intron 40.0%
ATGGAGAAGGATGAATATGG+GGG - chr3_1:76263503-76263522 Msa0376230:intron 40.0%
! CTTGGTACAGTGACTTTTCT+TGG + chr3_1:76263773-76263792 None:intergenic 40.0%
AGAAAAGTCACTGTACCAAG+AGG - chr3_1:76263773-76263792 Msa0376230:intron 40.0%
!!! AGGTCTTGGTTTTTGAGGTA+TGG - chr3_1:76263793-76263812 Msa0376230:intron 40.0%
GGGAAAGTTCTTGTACTTGA+TGG - chr3_1:76263904-76263923 Msa0376230:intron 40.0%
AAAGGATGAATGTGCTTACC+AGG - chr3_1:76263945-76263964 Msa0376230:intron 40.0%
!! GACTTTACATTTTTGGGGGA+CGG + chr3_1:76264003-76264022 None:intergenic 40.0%
AATAGCTGGCAAAAATGGGT+GGG + chr3_1:76264771-76264790 None:intergenic 40.0%
TTTCTTAAACGTGCACCTGA+AGG - chr3_1:76264794-76264813 Msa0376230:intron 40.0%
TTCTTAAACGTGCACCTGAA+GGG - chr3_1:76264795-76264814 Msa0376230:intron 40.0%
AGATTGAGATACAAGGGTTG+GGG + chr3_1:76265087-76265106 None:intergenic 40.0%
TTGAAGGAGTTTGAAAGAGG+AGG - chr3_1:76265404-76265423 Msa0376230:intron 40.0%
!! CATATTGTTTTGTTGGCTGG+TGG - chr3_1:76265697-76265716 Msa0376230:CDS 40.0%
TGGTTTCTCTACAAGTTCCT+GGG + chr3_1:76265978-76265997 None:intergenic 40.0%
ATGGTTTCTCTACAAGTTCC+TGG + chr3_1:76265979-76265998 None:intergenic 40.0%
CGGTGGAGTTCTTTGTAATA+TGG - chr3_1:76266030-76266049 Msa0376230:CDS 40.0%
! TGGAGAGCATGTCTTGAATA+AGG + chr3_1:76266081-76266100 None:intergenic 40.0%
CAAGTGTTCCAACATATCCA+AGG - chr3_1:76266143-76266162 Msa0376230:intron 40.0%
GTGGGATCAACTTTATCATG+AGG + chr3_1:76266323-76266342 None:intergenic 40.0%
! GATAAAGTTGATCCCACTGA+TGG - chr3_1:76266326-76266345 Msa0376230:intron 40.0%
TGCAACGTGACAAACCAAAA+AGG + chr3_1:76266543-76266562 None:intergenic 40.0%
ATGAGTGTGCTTAAAGGTTG+TGG - chr3_1:76266562-76266581 Msa0376230:CDS 40.0%
CAAAGTGAATCCTCTCAAGA+AGG + chr3_1:76266603-76266622 None:intergenic 40.0%
! ACTTGCCTAGTTTGGCATTT+TGG - chr3_1:76266663-76266682 Msa0376230:intron 40.0%
CTGTTCCAAAATGCCAAACT+AGG + chr3_1:76266671-76266690 None:intergenic 40.0%
!!! GGCATTTTGGAACAGTATAG+GGG - chr3_1:76266676-76266695 Msa0376230:intron 40.0%
ATTCCTTTCTTGGTATGCAG+TGG - chr3_1:76266789-76266808 Msa0376230:intron 40.0%
GTTTCTTCTATGCTCAACAG+AGG - chr3_1:76266821-76266840 Msa0376230:intron 40.0%
TTCTTCTATGCTCAACAGAG+GGG - chr3_1:76266823-76266842 Msa0376230:intron 40.0%
GGGTTCACAAAATCAACATG+CGG + chr3_1:76266849-76266868 None:intergenic 40.0%
!! TAGAAGGTGCTGATAAGCAT+CGG - chr3_1:76266889-76266908 Msa0376230:intron 40.0%
!! ATAAGCATCGGAGGAATCTT+AGG - chr3_1:76266901-76266920 Msa0376230:intron 40.0%
GTAAGATCTTTCTTGCATGC+AGG + chr3_1:76267043-76267062 None:intergenic 40.0%
ACCTCATTCTTCAGAAATGC+AGG + chr3_1:76267108-76267127 None:intergenic 40.0%
! CATTTCTGAAGAATGAGGTG+AGG - chr3_1:76267109-76267128 Msa0376230:intron 40.0%
GTATTGTACCACTAGTCATC+TGG - chr3_1:76267161-76267180 Msa0376230:intron 40.0%
ATTGTACCACTAGTCATCTG+GGG - chr3_1:76267163-76267182 Msa0376230:intron 40.0%
ATATTGCCCAGAGTTCAACA+AGG + chr3_1:76267267-76267286 None:intergenic 40.0%
GAATCTGTAATGTGGGATAG+TGG - chr3_1:76267449-76267468 Msa0376230:CDS 40.0%
TTTGCGGTGTTTATTACCGT+TGG - chr3_1:76267498-76267517 Msa0376230:CDS 40.0%
GTTGGTACAAACTCTTGCTT+TGG - chr3_1:76267516-76267535 Msa0376230:CDS 40.0%
TGGTACAAACTCTTGCTTTG+GGG - chr3_1:76267518-76267537 Msa0376230:CDS 40.0%
TGTATGGGACTCCAATGATT+TGG - chr3_1:76267836-76267855 Msa0376230:intron 40.0%
AAGTCAGAAGTTGCAGGAAA+AGG - chr3_1:76268268-76268287 Msa0376230:intron 40.0%
CAAAGCCACTATTGAGAGTT+TGG - chr3_1:76268304-76268323 Msa0376230:intron 40.0%
TATCGTCTGTCCACATGAAA+CGG + chr3_1:76268392-76268411 None:intergenic 40.0%
TGTGAAACTTAATGTGGACG+AGG - chr3_1:76268442-76268461 Msa0376230:five_prime_UTR 40.0%
AAAACTCTTTCAACAACCCG+AGG - chr3_1:76268468-76268487 Msa0376230:five_prime_UTR 40.0%
! GCCGGTTGTGATTAGTTAAT+TGG - chr3_1:76268494-76268513 Msa0376230:five_prime_UTR 40.0%
ATTGTGACTTGAGCAATGGT+AGG - chr3_1:76268574-76268593 Msa0376230:five_prime_UTR 40.0%
GCAAGGCAACATCAACATCA+AGG - chr3_1:76261937-76261956 Msa0376230:three_prime_UTR 45.0%
AGGCAACATCAACATCAAGG+GGG - chr3_1:76261940-76261959 Msa0376230:three_prime_UTR 45.0%
!! GGGTGTTGTTGATAGAAACG+CGG + chr3_1:76262103-76262122 None:intergenic 45.0%
TCTGGTGTGAATGTCAGTGA+GGG + chr3_1:76262123-76262142 None:intergenic 45.0%
ACAGAGAGAAGAGGAGTGAA+GGG + chr3_1:76262157-76262176 None:intergenic 45.0%
AACAGAGAGAAGAGGAGTGA+AGG + chr3_1:76262158-76262177 None:intergenic 45.0%
! ATTTTCCCCCCTTTTTCTGG+TGG - chr3_1:76262549-76262568 Msa0376230:three_prime_UTR 45.0%
AACAAGCCACCAGAAAAAGG+GGG + chr3_1:76262558-76262577 None:intergenic 45.0%
ACTGGAGCCAGTGAAGAAAA+GGG - chr3_1:76262950-76262969 Msa0376230:three_prime_UTR 45.0%
GAATGCCAGAAGACTATGGA+TGG - chr3_1:76263006-76263025 Msa0376230:three_prime_UTR 45.0%
! TGTCACTCTACCGTTGTTTC+GGG - chr3_1:76263117-76263136 Msa0376230:three_prime_UTR 45.0%
! TCAGCATCTCAAACTTGCTC+TGG - chr3_1:76263147-76263166 Msa0376230:three_prime_UTR 45.0%
TTGATACAACCGAGCCTTCA+TGG - chr3_1:76263484-76263503 Msa0376230:intron 45.0%
AGAAGGATGAATATGGGGGT+GGG - chr3_1:76263507-76263526 Msa0376230:intron 45.0%
GTGTATATGACGGTTGCTGA+TGG - chr3_1:76263687-76263706 Msa0376230:CDS 45.0%
! ATGACGGTTGCTGATGGTTT+TGG - chr3_1:76263693-76263712 Msa0376230:CDS 45.0%
CCTCAAAAACCAAGACCTCT+TGG + chr3_1:76263791-76263810 None:intergenic 45.0%
!! CCAAGAGGTCTTGGTTTTTG+AGG - chr3_1:76263788-76263807 Msa0376230:intron 45.0%
!! TACATTTTTGGGGGACGGAA+TGG + chr3_1:76263998-76264017 None:intergenic 45.0%
!!! CAGGTTTTAGTTGTTGGTGG+TGG - chr3_1:76264402-76264421 Msa0376230:CDS 45.0%
!! TTAGTTGTTGGTGGTGGAGA+TGG - chr3_1:76264408-76264427 Msa0376230:CDS 45.0%
TCAAACCCAACAGCTAACTC+TGG + chr3_1:76264603-76264622 None:intergenic 45.0%
! GTACACTTGCATGTTGGTGA+TGG - chr3_1:76264633-76264652 Msa0376230:intron 45.0%
CAATAGCTGGCAAAAATGGG+TGG + chr3_1:76264772-76264791 None:intergenic 45.0%
!! TGTTGATTCCTCAGATCCTG+TGG - chr3_1:76264835-76264854 Msa0376230:intron 45.0%
! GTTGATTCCTCAGATCCTGT+GGG - chr3_1:76264836-76264855 Msa0376230:intron 45.0%
TGGGCAAATGTTAGCAGTGT+TGG + chr3_1:76265461-76265480 None:intergenic 45.0%
GGAAAATCGGAGCAAAACGA+AGG + chr3_1:76265791-76265810 None:intergenic 45.0%
TTGTAATTTAGGTCCTGCCC+AGG - chr3_1:76265958-76265977 Msa0376230:intron 45.0%
! GATTATGGTTGGTGTGTTGC+TGG - chr3_1:76266382-76266401 Msa0376230:intron 45.0%
!! GCAGTTGATCCTAGCCTTTT+TGG - chr3_1:76266526-76266545 Msa0376230:CDS 45.0%
CGTGACAAACCAAAAAGGCT+AGG + chr3_1:76266538-76266557 None:intergenic 45.0%
CGTTGCATGAGTGTGCTTAA+AGG - chr3_1:76266556-76266575 Msa0376230:CDS 45.0%
GTGTGCTTAAAGGTTGTGGT+AGG - chr3_1:76266566-76266585 Msa0376230:CDS 45.0%
GTTTAGTAACTGTCAGGGCA+CGG + chr3_1:76266713-76266732 None:intergenic 45.0%
ACACCACTGCATACCAAGAA+AGG + chr3_1:76266795-76266814 None:intergenic 45.0%
TTGGTATGCAGTGGTGTGAT+AGG - chr3_1:76266798-76266817 Msa0376230:intron 45.0%
TGGTATGCAGTGGTGTGATA+GGG - chr3_1:76266799-76266818 Msa0376230:intron 45.0%
! GCCTGCATTTCTGAAGAATG+AGG - chr3_1:76267104-76267123 Msa0376230:intron 45.0%
! CAAGCAAGCATTGCTACTGA+CGG + chr3_1:76267140-76267159 None:intergenic 45.0%
CTATTTCCCCAGATGACTAG+TGG + chr3_1:76267172-76267191 None:intergenic 45.0%
TTGTGGGAGAAATAGGTACC+AGG - chr3_1:76267196-76267215 Msa0376230:intron 45.0%
! AATGGGTTCACAGACGGAAT+TGG + chr3_1:76267240-76267259 None:intergenic 45.0%
! GGCTTAAATGGGTTCACAGA+CGG + chr3_1:76267246-76267265 None:intergenic 45.0%
AGTAGCAGACGAGTAAGCAA+CGG - chr3_1:76267684-76267703 Msa0376230:intron 45.0%
TATAGGCCGCACCAAATCAT+TGG + chr3_1:76267850-76267869 None:intergenic 45.0%
! ATAGTGGCTTTGCATGGCAA+CGG + chr3_1:76268296-76268315 None:intergenic 45.0%
! CTCTCAATAGTGGCTTTGCA+TGG + chr3_1:76268302-76268321 None:intergenic 45.0%
!! GTATTAAAAATATTAAATTA+AGG + chr3_1:76262426-76262445 None:intergenic 5.0%
!! TATAAAAAAGTTAAAAATTT+AGG - chr3_1:76266504-76266523 Msa0376230:intron 5.0%
GTCTGGTGTGAATGTCAGTG+AGG + chr3_1:76262124-76262143 None:intergenic 50.0%
CACTGACATTCACACCAGAC+AGG - chr3_1:76262124-76262143 Msa0376230:three_prime_UTR 50.0%
GAGCGCAACTACTAGGGTTT+AGG + chr3_1:76262208-76262227 None:intergenic 50.0%
ACAAGCCACCAGAAAAAGGG+GGG + chr3_1:76262557-76262576 None:intergenic 50.0%
GACTGGAGCCAGTGAAGAAA+AGG - chr3_1:76262949-76262968 Msa0376230:three_prime_UTR 50.0%
CCTTCCCATCCATAGTCTTC+TGG + chr3_1:76263014-76263033 None:intergenic 50.0%
CCAGAAGACTATGGATGGGA+AGG - chr3_1:76263011-76263030 Msa0376230:three_prime_UTR 50.0%
GGCGAGTAACAGGAATGGTT+TGG - chr3_1:76263032-76263051 Msa0376230:three_prime_UTR 50.0%
! ACAATTGGCCTCCAACTCAG+GGG + chr3_1:76263100-76263119 None:intergenic 50.0%
! GACAATTGGCCTCCAACTCA+GGG + chr3_1:76263101-76263120 None:intergenic 50.0%
! TGACAATTGGCCTCCAACTC+AGG + chr3_1:76263102-76263121 None:intergenic 50.0%
! GTCACTCTACCGTTGTTTCG+GGG - chr3_1:76263118-76263137 Msa0376230:three_prime_UTR 50.0%
TGAGAACCACCCCGAAACAA+CGG + chr3_1:76263130-76263149 None:intergenic 50.0%
TTCAACAACCCAATGTGGCC+AGG - chr3_1:76263299-76263318 Msa0376230:three_prime_UTR 50.0%
AACAGTCACCTGGCCACATT+GGG + chr3_1:76263310-76263329 None:intergenic 50.0%
TAACAGTCACCTGGCCACAT+TGG + chr3_1:76263311-76263330 None:intergenic 50.0%
CATCCTTCTCCATGAAGGCT+CGG + chr3_1:76263496-76263515 None:intergenic 50.0%
GAGAAGGATGAATATGGGGG+TGG - chr3_1:76263506-76263525 Msa0376230:intron 50.0%
GAAGGATGAATATGGGGGTG+GGG - chr3_1:76263508-76263527 Msa0376230:intron 50.0%
AAGGATGAATATGGGGGTGG+GGG - chr3_1:76263509-76263528 Msa0376230:intron 50.0%
GTCACTGTACCAAGAGGTCT+TGG - chr3_1:76263779-76263798 Msa0376230:intron 50.0%
GGAGATGAGCTATCATCTCC+TGG + chr3_1:76263966-76263985 None:intergenic 50.0%
GCAGACGGTGGAAACAGTAT+GGG + chr3_1:76264358-76264377 None:intergenic 50.0%
AGCAGACGGTGGAAACAGTA+TGG + chr3_1:76264359-76264378 None:intergenic 50.0%
!! TTGTTGGTGGTGGAGATGGT+GGG - chr3_1:76264412-76264431 Msa0376230:CDS 50.0%
!! TGGAGATGGTGGGGTTCTAA+GGG - chr3_1:76264422-76264441 Msa0376230:CDS 50.0%
CAATATGCTCCACAGAGCTG+TGG + chr3_1:76264458-76264477 None:intergenic 50.0%
CCAACATGCAAGTGTACACG+AGG + chr3_1:76264630-76264649 None:intergenic 50.0%
CCTCGTGTACACTTGCATGT+TGG - chr3_1:76264627-76264646 Msa0376230:intron 50.0%
TTAAACGTGCACCTGAAGGG+AGG - chr3_1:76264798-76264817 Msa0376230:intron 50.0%
TTACTCACCCACAGGATCTG+AGG + chr3_1:76264846-76264865 None:intergenic 50.0%
TTCTCTACAAGTTCCTGGGC+AGG + chr3_1:76265974-76265993 None:intergenic 50.0%
! TCTAAGGCATTAAGACCCGG+TGG - chr3_1:76266013-76266032 Msa0376230:intron 50.0%
!! AAGGTGCTGATAAGCATCGG+AGG - chr3_1:76266892-76266911 Msa0376230:intron 50.0%
! GTAATTTGGGATGCAGGGTG+TGG - chr3_1:76267353-76267372 Msa0376230:intron 50.0%
!! GGCCGAGTTGGATGAGATTT+TGG - chr3_1:76267470-76267489 Msa0376230:CDS 50.0%
!! GGGACTCCAATGATTTGGTG+CGG - chr3_1:76267841-76267860 Msa0376230:intron 50.0%
!! TAATCACAACCGGCTAGCCT+CGG + chr3_1:76268488-76268507 None:intergenic 50.0%
TGAAGGGAGAGAGACCTGTC+TGG + chr3_1:76262141-76262160 None:intergenic 55.0%
GGACGCCGTAGAAAGAGGTT+TGG - chr3_1:76262984-76263003 Msa0376230:three_prime_UTR 55.0%
TGGATGGGAAGGCGAGTAAC+AGG - chr3_1:76263022-76263041 Msa0376230:three_prime_UTR 55.0%
GGGAAGGCGAGTAACAGGAA+TGG - chr3_1:76263027-76263046 Msa0376230:three_prime_UTR 55.0%
! ACTCTACCGTTGTTTCGGGG+TGG - chr3_1:76263121-76263140 Msa0376230:three_prime_UTR 55.0%
CAACCGAGCCTTCATGGAGA+AGG - chr3_1:76263490-76263509 Msa0376230:intron 55.0%
ATGAATATGGGGGTGGGGGA+AGG - chr3_1:76263513-76263532 Msa0376230:intron 55.0%
!! GTTGTTGGTGGTGGAGATGG+TGG - chr3_1:76264411-76264430 Msa0376230:CDS 55.0%
!! TGTTGGTGGTGGAGATGGTG+GGG - chr3_1:76264413-76264432 Msa0376230:CDS 55.0%
!! GTGGAGATGGTGGGGTTCTA+AGG - chr3_1:76264421-76264440 Msa0376230:CDS 55.0%
TATGCTCCACAGAGCTGTGG+CGG + chr3_1:76264455-76264474 None:intergenic 55.0%
! ATGTGGGATAGTGGCCGAGT+TGG - chr3_1:76267458-76267477 Msa0376230:CDS 55.0%
!! GGGCTTTGAGCTAGTGACCA+TGG - chr3_1:76267538-76267557 Msa0376230:exon 55.0%
TTCAACAACCCGAGGCTAGC+CGG - chr3_1:76268476-76268495 Msa0376230:five_prime_UTR 55.0%
!! AATCACAACCGGCTAGCCTC+GGG + chr3_1:76268487-76268506 None:intergenic 55.0%
ATGGGGGACGCCGTAGAAAG+AGG - chr3_1:76262979-76262998 Msa0376230:three_prime_UTR 60.0%
CAACTCAGGGGCTGAAGCCA+TGG + chr3_1:76263088-76263107 None:intergenic 60.0%
CATGGCTTCAGCCCCTGAGT+TGG - chr3_1:76263086-76263105 Msa0376230:three_prime_UTR 60.0%
GGGACGGAATGGAACAGAGG+GGG + chr3_1:76263987-76264006 None:intergenic 60.0%
GGGGACGGAATGGAACAGAG+GGG + chr3_1:76263988-76264007 None:intergenic 60.0%
GGGGGACGGAATGGAACAGA+GGG + chr3_1:76263989-76264008 None:intergenic 60.0%
TGGGGGACGGAATGGAACAG+AGG + chr3_1:76263990-76264009 None:intergenic 60.0%
AGTATCCCGCCACAGCTCTG+TGG - chr3_1:76264446-76264465 Msa0376230:CDS 60.0%
ATGCTCCACAGAGCTGTGGC+GGG + chr3_1:76264454-76264473 None:intergenic 60.0%
ACGGCGTCATACCTCCCTTC+AGG + chr3_1:76264812-76264831 None:intergenic 60.0%
! GGCTTCAGCCCCTGAGTTGG+AGG - chr3_1:76263089-76263108 Msa0376230:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 76261901 76268628 76261901 ID=Msa0376230;Name=Msa0376230
chr3_1 mRNA 76261901 76268628 76261901 ID=Msa0376230-mRNA-1;Parent=Msa0376230;Name=Msa0376230-mRNA-1;_AED=0.09;_eAED=0.09;_QI=276|1|1|1|0.8|0.72|11|1482|358
chr3_1 exon 76261901 76263448 76261901 ID=Msa0376230-mRNA-1:exon:18020;Parent=Msa0376230-mRNA-1
chr3_1 exon 76263591 76263720 76263591 ID=Msa0376230-mRNA-1:exon:18019;Parent=Msa0376230-mRNA-1
chr3_1 exon 76264365 76264560 76264365 ID=Msa0376230-mRNA-1:exon:18018;Parent=Msa0376230-mRNA-1
chr3_1 exon 76265672 76265743 76265672 ID=Msa0376230-mRNA-1:exon:18017;Parent=Msa0376230-mRNA-1
chr3_1 exon 76265875 76265947 76265875 ID=Msa0376230-mRNA-1:exon:18016;Parent=Msa0376230-mRNA-1
chr3_1 exon 76266020 76266124 76266020 ID=Msa0376230-mRNA-1:exon:18015;Parent=Msa0376230-mRNA-1
chr3_1 exon 76266515 76266637 76266515 ID=Msa0376230-mRNA-1:exon:18014;Parent=Msa0376230-mRNA-1
chr3_1 exon 76266720 76266796 76266720 ID=Msa0376230-mRNA-1:exon:18013;Parent=Msa0376230-mRNA-1
chr3_1 exon 76267209 76267253 76267209 ID=Msa0376230-mRNA-1:exon:18012;Parent=Msa0376230-mRNA-1
chr3_1 exon 76267361 76267581 76267361 ID=Msa0376230-mRNA-1:exon:18011;Parent=Msa0376230-mRNA-1
chr3_1 exon 76268384 76268628 76268384 ID=Msa0376230-mRNA-1:exon:18010;Parent=Msa0376230-mRNA-1
chr3_1 five_prime_UTR 76268384 76268628 76268384 ID=Msa0376230-mRNA-1:five_prime_utr;Parent=Msa0376230-mRNA-1
chr3_1 five_prime_UTR 76267551 76267581 76267551 ID=Msa0376230-mRNA-1:five_prime_utr;Parent=Msa0376230-mRNA-1
chr3_1 CDS 76267361 76267550 76267361 ID=Msa0376230-mRNA-1:cds;Parent=Msa0376230-mRNA-1
chr3_1 CDS 76267209 76267253 76267209 ID=Msa0376230-mRNA-1:cds;Parent=Msa0376230-mRNA-1
chr3_1 CDS 76266720 76266796 76266720 ID=Msa0376230-mRNA-1:cds;Parent=Msa0376230-mRNA-1
chr3_1 CDS 76266515 76266637 76266515 ID=Msa0376230-mRNA-1:cds;Parent=Msa0376230-mRNA-1
chr3_1 CDS 76266020 76266124 76266020 ID=Msa0376230-mRNA-1:cds;Parent=Msa0376230-mRNA-1
chr3_1 CDS 76265875 76265947 76265875 ID=Msa0376230-mRNA-1:cds;Parent=Msa0376230-mRNA-1
chr3_1 CDS 76265672 76265743 76265672 ID=Msa0376230-mRNA-1:cds;Parent=Msa0376230-mRNA-1
chr3_1 CDS 76264365 76264560 76264365 ID=Msa0376230-mRNA-1:cds;Parent=Msa0376230-mRNA-1
chr3_1 CDS 76263591 76263720 76263591 ID=Msa0376230-mRNA-1:cds;Parent=Msa0376230-mRNA-1
chr3_1 CDS 76263383 76263448 76263383 ID=Msa0376230-mRNA-1:cds;Parent=Msa0376230-mRNA-1
chr3_1 three_prime_UTR 76261901 76263382 76261901 ID=Msa0376230-mRNA-1:three_prime_utr;Parent=Msa0376230-mRNA-1
Gene Sequence

>Msa0376230

ATGGGGGACGCCGTAGAAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGCGAGTAACAGGAATGGTTTGGAGAAGGAGATTCCTTCATGTTGTTTGAAAGCCATGGCTTCAGCCCCTGAGTTGGAGGCCAATTGTCACTCTACCGTTGTTTCGGGGTGGTTCTCAGCATCTCAAACTTGCTCTGAAAAATCAGAGGAAGTTCTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAGAAGAAATTGTTCCAAGAAAAGTCACTGTACCAAGAGGTCTTGGTTTTTGAGTCATTAACATATGGGAAAGTTCTTGTACTTGATGGGATTGTTCAGTTGACTGAAAAGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTCCCCCTCTGTTCCATTCCGTCCCCCAAAAATGTTTTAGTTGTTGGTGGTGGAGATGGTGGGGTTCTAAGGGAAGTATCCCGCCACAGCTCTGTGGAGCATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCCAGAGTTAGCTGTTGGGTTTGACGATCCTCGTGTACACTTGCATGTTGGTGATGCTATTGAATTTCTTAAACGTGCACCTGAAGGGAGGTATGACGCCGTAATTGTTGATTCCTCAGATCCTGTGGGTCCTGCCCAGGAACTTGTAGAGAAACCATTTTTTGAGACTATATCTAAGGCATTAAGACCCGGTGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATTCAAGACATGCTCTCCATTTGTCGAGAAACATTTAAAGGTTCTGTACATTATGCATGGGCAAGTGTTCCAACATATCCAAGTGGTGTGATAGGGTTTCTTCTATGCTCAACAGAGGGGCCGCATGTTGATTTTGTGAACCCCATCAATCCCATTGAAAAGTTAGAAGGTGCTGATAAGCATCGGAGGAATCTTAGGTTCTATAACTCAGAGATACATACAGCGGCTTTTGCACTGCCTGCATTTCTGAAGAATGAGGTGAGGTTGCTCCGTCAGTAG
Protein sequence

>Msa0376230

MGDAVERGLECQKTMDGKASNRNGLEKEIPSCCLKAMASAPELEANCHSTVVSGWFSASQTCSEKSEEVLYFNNPMWPGEAHSIKVEKKLFQEKSLYQEVLVFESLTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKNVLVVGGGDGGVLREVSRHSSVEHIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDAIEFLKRAPEGRYDAVIVDSSDPVGPAQELVEKPFFETISKALRPGGVLCNMAESMWLHTHLIQDMLSICRETFKGSVHYAWASVPTYPSGVIGFLLCSTEGPHVDFVNPINPIEKLEGADKHRRNLRFYNSEIHTAAFALPAFLKNEVRLLRQ*