AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0516070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516070 MtrunA17_Chr3g0126551 99.721 358 1 0 1 358 1 358 0.0 739
Msa0516070 MtrunA17_Chr1g0158851 80.645 341 62 2 17 357 25 361 0.0 547
Msa0516070 MtrunA17_Chr5g0413701 68.167 311 82 4 44 353 44 338 7.08e-160 451
Msa0516070 MtrunA17_Chr8g0365071 66.019 309 90 3 45 353 44 337 5.63e-155 439
Msa0516070 MtrunA17_Chr3g0117881 64.057 281 94 3 75 350 50 328 2.63e-128 371
Msa0516070 MtrunA17_Chr5g0394371 33.178 214 135 6 95 303 51 261 8.68e-33 124
Msa0516070 MtrunA17_Chr1g0150851 29.078 282 189 8 83 358 56 332 1.13e-29 116
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516070 AT5G53120.1 80.286 350 67 2 8 356 8 356 0.0 559
Msa0516070 AT5G53120.4 80.286 350 67 2 8 356 8 356 0.0 559
Msa0516070 AT5G53120.2 80.286 350 67 2 8 356 8 356 0.0 559
Msa0516070 AT5G53120.5 80.286 350 67 2 8 356 8 356 0.0 559
Msa0516070 AT5G53120.3 80.286 350 67 2 8 356 8 356 0.0 559
Msa0516070 AT5G53120.7 80.286 350 67 2 8 356 25 373 0.0 558
Msa0516070 AT5G53120.6 72.414 377 75 4 8 356 8 383 0.0 550
Msa0516070 AT1G23820.1 66.775 307 86 2 44 350 36 326 2.65e-158 447
Msa0516070 AT1G70310.1 65.472 307 92 2 44 350 40 332 5.35e-154 437
Msa0516070 AT1G23820.2 60.839 286 92 2 14 293 44 315 6.92e-129 372
Msa0516070 AT5G19530.2 29.365 252 170 6 57 303 14 262 7.14e-33 125
Msa0516070 AT5G19530.1 29.365 252 170 6 57 303 21 269 1.04e-32 125

Find 199 sgRNAs with CRISPR-Local

Find 448 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCTCCACATGAAAGAAAA+TGG 0.147870 3_4:+67498319 None:intergenic
CATGAAATAATTAATGTATT+TGG 0.156868 3_4:+67492270 None:intergenic
GCCGGTTGTGATTAGTTAAT+TGG 0.182603 3_4:-67491829 Msa0516070:three_prime_UTR
GTCGAAAGGTCTTGTATAAT+TGG 0.185038 3_4:+67491980 None:intergenic
TATTGATGTATTGAGTAATT+TGG 0.190055 3_4:-67492984 Msa0516070:three_prime_UTR
TGTCACTCTACCGTTGTTTC+GGG 0.194129 3_4:-67497206 Msa0516070:CDS
CTTAATTTAATAGAGTTTAA+TGG 0.209727 3_4:-67498347 Msa0516070:five_prime_UTR
AGAGTTCAACAAGGCTTAAA+TGG 0.215102 3_4:+67493068 None:intergenic
ACATAGCAAGTGTGTTTAAA+TGG 0.233942 3_4:-67492904 Msa0516070:three_prime_UTR
GTGGAGATGGTGGGGTTCTA+AGG 0.243049 3_4:-67495902 Msa0516070:CDS
GTGAAGAAAAGGGTTATTTA+TGG 0.247821 3_4:-67497363 Msa0516070:exon
AGTTCTTTGATTGCTTCTTC+TGG 0.248742 3_4:+67498254 None:intergenic
TAGATTATTGTGGGAGAAAT+AGG 0.256539 3_4:-67493134 Msa0516070:three_prime_UTR
GAATTACATGCAATCTCTTA+TGG 0.258048 3_4:-67491776 Msa0516070:three_prime_UTR
ATTTGTCGAGAAACATTTAA+AGG 0.261361 3_4:-67494223 Msa0516070:CDS
CAAAGCCACTATTGAGAGTT+TGG 0.273249 3_4:-67492019 Msa0516070:three_prime_UTR
TTGTCACTCTACCGTTGTTT+CGG 0.279338 3_4:-67497207 Msa0516070:CDS
AGTCATTCAATAAACCTAAA+AGG 0.285726 3_4:+67492317 None:intergenic
CGGTGGAGTTCTTTGTAATA+TGG 0.303405 3_4:-67494293 Msa0516070:CDS
GGCCGAGTTGGATGAGATTT+TGG 0.309977 3_4:-67492853 Msa0516070:three_prime_UTR
GTTGGTACAAACTCTTGCTT+TGG 0.323146 3_4:-67492807 Msa0516070:three_prime_UTR
GTTCTTTGATTGCTTCTTCT+GGG 0.324975 3_4:+67498255 None:intergenic
TCTTCTCTACTTTGATTGAA+TGG 0.326205 3_4:+67496583 None:intergenic
TATCTAATACACTCTTTGTA+TGG 0.333752 3_4:-67492503 Msa0516070:three_prime_UTR
CCTTCCCATCCATAGTCTTC+TGG 0.342826 3_4:+67497312 None:intergenic
ATGGTTTCTCTACAAGTTCC+TGG 0.346919 3_4:+67494347 None:intergenic
CTTCTCTACTTTGATTGAAT+GGG 0.348057 3_4:+67496584 None:intergenic
TTGGTACAAACTCTTGCTTT+GGG 0.351156 3_4:-67492806 Msa0516070:three_prime_UTR
ATTGATGTATTGAGTAATTT+GGG 0.351222 3_4:-67492983 Msa0516070:three_prime_UTR
AATGGGTTCACAGACGGAAT+TGG 0.355718 3_4:+67493086 None:intergenic
TGAAGAAAAGGGTTATTTAT+GGG 0.362253 3_4:-67497362 Msa0516070:exon
TGGAGAGCATGTCTTGAATA+AGG 0.362663 3_4:+67494245 None:intergenic
TTAGTTGTTGGTGGTGGAGA+TGG 0.363986 3_4:-67495915 Msa0516070:CDS
TGAGTAACAAAGGAAATTCA+TGG 0.366267 3_4:+67492558 None:intergenic
ATAAGCATCGGAGGAATCTT+AGG 0.367711 3_4:-67493422 Msa0516070:CDS
TTTAAATGTTTCTCGACAAA+TGG 0.372736 3_4:+67494225 None:intergenic
TTCTCCACATGAAAGAAAAT+GGG 0.373745 3_4:+67498320 None:intergenic
TGACAATTGGCCTCCAACTC+AGG 0.374602 3_4:+67497224 None:intergenic
GGGAAAGTTCTTGTACTTGA+TGG 0.375756 3_4:-67496419 Msa0516070:CDS
TTGGTATGCAGTGGTGTGAT+AGG 0.380687 3_4:-67493525 Msa0516070:intron
TTACTCAATACATCAATAAC+TGG 0.384736 3_4:+67492989 None:intergenic
GTTGTTGGTGGTGGAGATGG+TGG 0.389147 3_4:-67495912 Msa0516070:CDS
TTGTTGGTGGTGGAGATGGT+GGG 0.396225 3_4:-67495911 Msa0516070:CDS
GATGGTGAGAGTAAAATCTA+TGG 0.398569 3_4:-67492676 Msa0516070:three_prime_UTR
GGCTTCAGCCCCTGAGTTGG+AGG 0.399000 3_4:-67497234 Msa0516070:CDS
AATCCCATTGAAAAGTTAGA+AGG 0.400616 3_4:-67493450 Msa0516070:CDS
GACTGGAGCCAGTGAAGAAA+AGG 0.401060 3_4:-67497374 Msa0516070:five_prime_UTR
ATTTAAGCCTTGTTGAACTC+TGG 0.402210 3_4:-67493066 Msa0516070:three_prime_UTR
TATTGAGTAATTTGGGATGC+AGG 0.405239 3_4:-67492976 Msa0516070:three_prime_UTR
TGTATGGGACTCCAATGATT+TGG 0.412416 3_4:-67492487 Msa0516070:three_prime_UTR
TGGATGGGAAGGCGAGTAAC+AGG 0.416616 3_4:-67497301 Msa0516070:CDS
ACGGCGTCATACCTCCCTTC+AGG 0.420015 3_4:+67495514 None:intergenic
GTATTGTACCACTAGTCATC+TGG 0.427071 3_4:-67493162 Msa0516070:three_prime_UTR
GTCACTGTACCAAGAGGTCT+TGG 0.430881 3_4:-67496544 Msa0516070:CDS
TTCAACATTAATATTAGAAG+AGG 0.438833 3_4:+67491796 None:intergenic
AACAGTCACCTGGCCACATT+GGG 0.439358 3_4:+67497016 None:intergenic
TTTGGAATGCCAGAAGACTA+TGG 0.441748 3_4:-67497321 Msa0516070:CDS
GGCGAGTAACAGGAATGGTT+TGG 0.443384 3_4:-67497291 Msa0516070:CDS
TCCAATTAACTAATCACAAC+CGG 0.446405 3_4:+67491828 None:intergenic
GAATTACAAAATAGTTATGA+TGG 0.447656 3_4:-67492694 Msa0516070:three_prime_UTR
TATAGGCCGCACCAAATCAT+TGG 0.448044 3_4:+67492476 None:intergenic
TTAAGTTTCACAATATTACT+AGG 0.448810 3_4:+67491892 None:intergenic
TTTAAGCCTTGTTGAACTCT+GGG 0.450398 3_4:-67493065 Msa0516070:three_prime_UTR
ATCTTTCAATATACTCTCTC+CGG 0.462182 3_4:-67492363 Msa0516070:three_prime_UTR
AAGTCAGAAGTTGCAGGAAA+AGG 0.463232 3_4:-67492055 Msa0516070:three_prime_UTR
TTCTCTACAAGTTCCTGGGC+AGG 0.463913 3_4:+67494352 None:intergenic
GGAAAGTTCTTGTACTTGAT+GGG 0.470422 3_4:-67496418 Msa0516070:CDS
TCAGCATCTCAAACTTGCTC+TGG 0.472000 3_4:-67497176 Msa0516070:intron
TTCAACAACCCAATGTGGCC+AGG 0.474309 3_4:-67497024 Msa0516070:intron
GAGTTCAACAAGGCTTAAAT+GGG 0.474564 3_4:+67493069 None:intergenic
ACCTCATTCTTCAGAAATGC+AGG 0.477276 3_4:+67493218 None:intergenic
TGTTGGTGGTGGAGATGGTG+GGG 0.479762 3_4:-67495910 Msa0516070:CDS
GGACGCCGTAGAAAGAGGTT+TGG 0.482254 3_4:-67497339 Msa0516070:CDS
CAGACGATATTTACACTCAT+AGG 0.483093 3_4:-67491920 Msa0516070:three_prime_UTR
ATCTGAGGAATCAACAATTA+CGG 0.484857 3_4:+67495495 None:intergenic
GTCACATTTGAAGATGAAAG+TGG 0.490722 3_4:-67492756 Msa0516070:three_prime_UTR
AGTATCCAAACTCTCAATAG+TGG 0.493375 3_4:+67492014 None:intergenic
TATTTGTGAGATAGATAAGA+TGG 0.498631 3_4:-67495844 Msa0516070:CDS
AATCAAAAGTCAGAAGTTGC+AGG 0.499303 3_4:-67492061 Msa0516070:three_prime_UTR
GCATTCCAAACCTCTTTCTA+CGG 0.502649 3_4:+67497334 None:intergenic
TTCAACAACCCGAGGCTAGC+CGG 0.503235 3_4:-67491847 Msa0516070:three_prime_UTR
AAGGTTCTGTACATTATGCA+TGG 0.503330 3_4:-67494204 Msa0516070:CDS
GCAAGGCAACATCAACATCA+AGG 0.505969 3_4:-67498381 Msa0516070:five_prime_UTR
GTAATATGGCAGAAAGTATG+TGG 0.507464 3_4:-67494279 Msa0516070:CDS
CAACTCAGGGGCTGAAGCCA+TGG 0.509823 3_4:+67497238 None:intergenic
TTCATGTTGTTTGAAAGCCA+TGG 0.510589 3_4:-67497255 Msa0516070:CDS
CTGGGGAAATAGATTATTGT+GGG 0.512870 3_4:-67493143 Msa0516070:three_prime_UTR
TTTGCGGTGTTTATTACCGT+TGG 0.514565 3_4:-67492825 Msa0516070:three_prime_UTR
TGGAGATGGTGGGGTTCTAA+GGG 0.514791 3_4:-67495901 Msa0516070:CDS
GTAATTTGGGATGCAGGGTG+TGG 0.515529 3_4:-67492970 Msa0516070:three_prime_UTR
TGAAGGGAGAGAGACCTGTC+TGG 0.518282 3_4:+67498180 None:intergenic
TGGTATGCAGTGGTGTGATA+GGG 0.519393 3_4:-67493524 Msa0516070:intron
GAAGAAAAGGGTTATTTATG+GGG 0.519700 3_4:-67497361 Msa0516070:exon
AAACTCTACCTTGGATATGT+TGG 0.521419 3_4:+67494172 None:intergenic
TATCGTCTGTCCACATGAAA+CGG 0.522259 3_4:+67491934 None:intergenic
GAATGCCAGAAGACTATGGA+TGG 0.522599 3_4:-67497317 Msa0516070:CDS
TAACAGTCACCTGGCCACAT+TGG 0.523868 3_4:+67497015 None:intergenic
AACAACGGTAGAGTGACAAT+TGG 0.525820 3_4:+67497211 None:intergenic
GGAGGAGTAGAAAATACTAA+TGG 0.526512 3_4:-67498425 None:intergenic
AATCACAACCGGCTAGCCTC+GGG 0.527262 3_4:+67491839 None:intergenic
AAAGGATGAATGTGCTTACC+AGG 0.527996 3_4:-67496378 Msa0516070:CDS
TATTGTACCACTAGTCATCT+GGG 0.529083 3_4:-67493161 Msa0516070:three_prime_UTR
TAATCACAACCGGCTAGCCT+CGG 0.533627 3_4:+67491838 None:intergenic
TTTCTTAAACGTGCACCTGA+AGG 0.534171 3_4:-67495529 Msa0516070:CDS
GACAATTGGCCTCCAACTCA+GGG 0.536122 3_4:+67497225 None:intergenic
ATCTAATACACTCTTTGTAT+GGG 0.542021 3_4:-67492502 Msa0516070:three_prime_UTR
GGAGATGAGCTATCATCTCC+TGG 0.549717 3_4:+67496360 None:intergenic
TTCTTAAACGTGCACCTGAA+GGG 0.550495 3_4:-67495528 Msa0516070:CDS
TGGTTTCTCTACAAGTTCCT+GGG 0.552051 3_4:+67494348 None:intergenic
TTTCTTCTATGCTCAACAGA+GGG 0.553053 3_4:-67493501 Msa0516070:CDS
AAAATGTGTTAAGAGTATGT+TGG 0.556141 3_4:-67492444 Msa0516070:three_prime_UTR
CAAGGCAACATCAACATCAA+GGG 0.557751 3_4:-67498380 Msa0516070:five_prime_UTR
TCAACATTAATATTAGAAGA+GGG 0.557845 3_4:+67491797 None:intergenic
GAATCTGTAATGTGGGATAG+TGG 0.558125 3_4:-67492874 Msa0516070:three_prime_UTR
TCAAACCCAACAGCTAACTC+TGG 0.559364 3_4:+67495723 None:intergenic
GGCTTAAATGGGTTCACAGA+CGG 0.559671 3_4:+67493080 None:intergenic
TGGTACAAACTCTTGCTTTG+GGG 0.562647 3_4:-67492805 Msa0516070:three_prime_UTR
GGGCTTTGAGCTAGTGACCA+TGG 0.563969 3_4:-67492785 Msa0516070:three_prime_UTR
CATGGCTTCAGCCCCTGAGT+TGG 0.564808 3_4:-67497237 Msa0516070:CDS
TGTTGATTCCTCAGATCCTG+TGG 0.566155 3_4:-67495488 Msa0516070:CDS
GGGACGGAATGGAACAGAGG+GGG 0.567127 3_4:+67496339 None:intergenic
CATATTACAAAGAACTCCAC+CGG 0.568035 3_4:+67494294 None:intergenic
CACTGACATTCACACCAGAC+AGG 0.568943 3_4:-67498194 Msa0516070:intron
TATGCTCCACAGAGCTGTGG+CGG 0.569419 3_4:+67495871 None:intergenic
AGGTTCTGTACATTATGCAT+GGG 0.569562 3_4:-67494203 Msa0516070:CDS
CTCTCAATAGTGGCTTTGCA+TGG 0.570857 3_4:+67492024 None:intergenic
TTGTAATTTAGGTCCTGCCC+AGG 0.572216 3_4:-67494365 Msa0516070:intron
TGTTTATAAATGTGATCGGA+GGG 0.575998 3_4:-67492228 Msa0516070:three_prime_UTR
ATGCTCCACAGAGCTGTGGC+GGG 0.576101 3_4:+67495872 None:intergenic
ACTGGAGCCAGTGAAGAAAA+GGG 0.576281 3_4:-67497373 Msa0516070:five_prime_UTR
ATTTGAAGATGAAAGTGGGA+AGG 0.577196 3_4:-67492751 Msa0516070:three_prime_UTR
TCTGGGGAAATAGATTATTG+TGG 0.582078 3_4:-67493144 Msa0516070:three_prime_UTR
CCAGAAGACTATGGATGGGA+AGG 0.584299 3_4:-67497312 Msa0516070:CDS
TAACAGGAATGGTTTGGAGA+AGG 0.585433 3_4:-67497285 Msa0516070:CDS
AAGAAAAGGGTTATTTATGG+GGG 0.585757 3_4:-67497360 Msa0516070:exon
GATTGTTCAGTTGACTGAAA+AGG 0.585805 3_4:-67496396 Msa0516070:CDS
ATGACATAAATAATCACGCC+TGG 0.588547 3_4:+67493109 None:intergenic
ATAGTGGCTTTGCATGGCAA+CGG 0.588983 3_4:+67492030 None:intergenic
TTGTTTATAAATGTGATCGG+AGG 0.589261 3_4:-67492229 Msa0516070:three_prime_UTR
TCACATTTGAAGATGAAAGT+GGG 0.593061 3_4:-67492755 Msa0516070:three_prime_UTR
TTAAACATCTTGAGTAACAA+AGG 0.594351 3_4:+67492548 None:intergenic
TTTGAAGATGAAAGTGGGAA+GGG 0.598264 3_4:-67492750 Msa0516070:three_prime_UTR
TCAAATGTGACAAAGTTCCA+TGG 0.601412 3_4:+67492768 None:intergenic
TCTCCACATGAAAGAAAATG+GGG 0.607718 3_4:+67498321 None:intergenic
TTACTCACCCACAGGATCTG+AGG 0.608698 3_4:+67495480 None:intergenic
TAATATTGTGAAACTTAATG+TGG 0.610663 3_4:-67491887 Msa0516070:three_prime_UTR
TAGAAGGTGCTGATAAGCAT+CGG 0.610775 3_4:-67493434 Msa0516070:CDS
ACTCTACCGTTGTTTCGGGG+TGG 0.610888 3_4:-67497202 Msa0516070:CDS
AACCAAAATCTCATCCAACT+CGG 0.613145 3_4:+67492851 None:intergenic
ATTGAGTAATTTGGGATGCA+GGG 0.616070 3_4:-67492975 Msa0516070:three_prime_UTR
GTACACTTGCATGTTGGTGA+TGG 0.618204 3_4:-67495690 Msa0516070:intron
ATTGTGACTTGAGCAATGGT+AGG 0.619747 3_4:-67491749 Msa0516070:three_prime_UTR
GTCACTCTACCGTTGTTTCG+GGG 0.620935 3_4:-67497205 Msa0516070:CDS
TTGTGGGAGAAATAGGTACC+AGG 0.621090 3_4:-67493127 Msa0516070:three_prime_UTR
GCCTGCATTTCTGAAGAATG+AGG 0.621479 3_4:-67493219 Msa0516070:CDS
TCTGGTGTGAATGTCAGTGA+GGG 0.621626 3_4:+67498198 None:intergenic
AAAGCAAGAGTTTGTACCAA+CGG 0.622544 3_4:+67492809 None:intergenic
CTATTTCCCCAGATGACTAG+TGG 0.623306 3_4:+67493154 None:intergenic
ATGGCTTTCAAACAACATGA+AGG 0.623348 3_4:+67497257 None:intergenic
CAAGCAAGCATTGCTACTGA+CGG 0.624255 3_4:+67493186 None:intergenic
TTTATTTCAACAACCCAATG+TGG 0.626443 3_4:-67497029 Msa0516070:CDS
AGTTTCACAATATTACTAGG+AGG 0.632178 3_4:+67491895 None:intergenic
TACACATTTAGTGTAAAATG+TGG 0.632403 3_4:+67492414 None:intergenic
ATGTGGGATAGTGGCCGAGT+TGG 0.633622 3_4:-67492865 Msa0516070:three_prime_UTR
AAGGCAACATCAACATCAAG+GGG 0.635113 3_4:-67498379 Msa0516070:five_prime_UTR
ATTTGTGTAACCGTTTCATG+TGG 0.640906 3_4:-67491944 Msa0516070:three_prime_UTR
CAAGTGTTCCAACATATCCA+AGG 0.643163 3_4:-67494180 Msa0516070:intron
CAATATGCTCCACAGAGCTG+TGG 0.644313 3_4:+67495868 None:intergenic
TTCTTCTATGCTCAACAGAG+GGG 0.645049 3_4:-67493500 Msa0516070:CDS
GTTTCTTCTATGCTCAACAG+AGG 0.646189 3_4:-67493502 Msa0516070:CDS
GGGACTCCAATGATTTGGTG+CGG 0.650425 3_4:-67492482 Msa0516070:three_prime_UTR
TTAAACGTGCACCTGAAGGG+AGG 0.651100 3_4:-67495525 Msa0516070:CDS
TCTTATGCAGATACATACAG+CGG 0.652959 3_4:-67493252 Msa0516070:intron
GTCTGGTGTGAATGTCAGTG+AGG 0.653488 3_4:+67498197 None:intergenic
AGTATCCCGCCACAGCTCTG+TGG 0.654087 3_4:-67495877 Msa0516070:CDS
TGTGAAACTTAATGTGGACG+AGG 0.656167 3_4:-67491881 Msa0516070:three_prime_UTR
GGGAAGGCGAGTAACAGGAA+TGG 0.657558 3_4:-67497296 Msa0516070:CDS
GGGTTCACAAAATCAACATG+CGG 0.658739 3_4:+67493477 None:intergenic
ATATCTAAGGCATTAAGACC+CGG 0.667528 3_4:-67494313 Msa0516070:CDS
AAAACTCTTTCAACAACCCG+AGG 0.667762 3_4:-67491855 Msa0516070:three_prime_UTR
CCTCGTGTACACTTGCATGT+TGG 0.668273 3_4:-67495696 Msa0516070:CDS
TTTGATTGTGACTTGAGCAA+TGG 0.670072 3_4:-67491753 Msa0516070:three_prime_UTR
AGAAAAGTCACTGTACCAAG+AGG 0.670694 3_4:-67496550 Msa0516070:CDS
AATGCCAGAAGACTATGGAT+GGG 0.672149 3_4:-67497316 Msa0516070:CDS
CCAACATGCAAGTGTACACG+AGG 0.673468 3_4:+67495696 None:intergenic
AGTAGCAGACGAGTAAGCAA+CGG 0.682687 3_4:-67492639 Msa0516070:three_prime_UTR
TGAGAACCACCCCGAAACAA+CGG 0.682894 3_4:+67497196 None:intergenic
GTTGATTCCTCAGATCCTGT+GGG 0.684990 3_4:-67495487 Msa0516070:intron
ATATTACAAAGAACTCCACC+GGG 0.685339 3_4:+67494295 None:intergenic
GGGGACGGAATGGAACAGAG+GGG 0.690224 3_4:+67496338 None:intergenic
AAGGTGCTGATAAGCATCGG+AGG 0.691606 3_4:-67493431 Msa0516070:CDS
TCTTAGGTTCTATAACTCAG+AGG 0.692345 3_4:-67493406 Msa0516070:intron
ACAATTGGCCTCCAACTCAG+GGG 0.704373 3_4:+67497226 None:intergenic
TCTAAGGCATTAAGACCCGG+TGG 0.707720 3_4:-67494310 Msa0516070:CDS
CATTTCTGAAGAATGAGGTG+AGG 0.708001 3_4:-67493214 Msa0516070:CDS
ATTGTACCACTAGTCATCTG+GGG 0.716756 3_4:-67493160 Msa0516070:three_prime_UTR
ATATTGCCCAGAGTTCAACA+AGG 0.749555 3_4:+67493059 None:intergenic
GGGTGTTGTTGATAGAAACG+CGG 0.762980 3_4:+67498218 None:intergenic
AGGCAACATCAACATCAAGG+GGG 0.776880 3_4:-67498378 Msa0516070:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTAATATTAATTAATCTAT+GGG + chr3_4:67492053-67492072 None:intergenic 10.0%
!! TTGTAATATTAATTAATCTA+TGG + chr3_4:67492054-67492073 None:intergenic 10.0%
!!! TAGTTCAATATAAATATTTT+AGG + chr3_4:67495638-67495657 None:intergenic 10.0%
!! AAATAAGTAAATACAATATA+TGG + chr3_4:67496766-67496785 None:intergenic 10.0%
!!! ACTTATTTAACTTTATTTAT+TGG - chr3_4:67496778-67496797 Msa0516070:intron 10.0%
!! CTTAATTTAATAGAGTTTAA+TGG - chr3_4:67491787-67491806 Msa0516070:three_prime_UTR 15.0%
!! GTAATATTAATTAATCTATG+GGG + chr3_4:67492052-67492071 None:intergenic 15.0%
!!! TCACTTTTATTTTATATTTC+AGG - chr3_4:67492402-67492421 Msa0516070:three_prime_UTR 15.0%
!!! ATATCTTTGAAAATAACTTT+TGG - chr3_4:67493365-67493384 Msa0516070:intron 15.0%
!!! TAATTTTTATGTGTATATGA+CGG - chr3_4:67493488-67493507 Msa0516070:CDS 15.0%
!! AAAATATTAAAGAATAGAGT+AGG + chr3_4:67494016-67494035 None:intergenic 15.0%
!!! AATTTTTATGATGTTATTTC+AGG - chr3_4:67494194-67494213 Msa0516070:CDS 15.0%
!! TGAGTAATTTAAATTCAAAA+TGG - chr3_4:67494670-67494689 Msa0516070:intron 15.0%
!! TCTGATTTATCTATTTATTT+AGG + chr3_4:67495063-67495082 None:intergenic 15.0%
!!! TTCTTTAAAAGTAAAATCAA+AGG + chr3_4:67496037-67496056 None:intergenic 15.0%
!!! CTTTGTTATAATTGAATTTT+TGG - chr3_4:67496429-67496448 Msa0516070:CDS 15.0%
!!! TTTTGTAATTCAATATACAT+AGG + chr3_4:67497431-67497450 None:intergenic 15.0%
!!! TAAACAAAATATAACCTTTT+AGG - chr3_4:67497803-67497822 Msa0516070:intron 15.0%
!! CATGAAATAATTAATGTATT+TGG + chr3_4:67497867-67497886 None:intergenic 15.0%
!!! TAAACAAAAAACAACTTTTT+AGG + chr3_4:67497892-67497911 None:intergenic 15.0%
!!! TTTTTGTTTATAAATGTGAT+CGG - chr3_4:67497902-67497921 Msa0516070:intron 15.0%
!!! GGGTATTTTCTTAATATAAT+TGG + chr3_4:67492144-67492163 None:intergenic 20.0%
!! TCAAATAAGAAAACAAAACA+GGG + chr3_4:67492164-67492183 None:intergenic 20.0%
!! ATCAAATAAGAAAACAAAAC+AGG + chr3_4:67492165-67492184 None:intergenic 20.0%
!!! TTACATGTGATTTTGTTTTT+TGG - chr3_4:67492567-67492586 Msa0516070:three_prime_UTR 20.0%
!!! TACATGTGATTTTGTTTTTT+GGG - chr3_4:67492568-67492587 Msa0516070:three_prime_UTR 20.0%
!!! TTTTTTTACAGAAAAATCAG+AGG - chr3_4:67493076-67493095 Msa0516070:three_prime_UTR 20.0%
!! ACACATAAAAATTACATACT+TGG + chr3_4:67493482-67493501 None:intergenic 20.0%
!! GAATAAAAAGAGAACAATAT+AGG + chr3_4:67493639-67493658 None:intergenic 20.0%
!!! TTTTTACAGTCATTAACATA+TGG - chr3_4:67493694-67493713 Msa0516070:intron 20.0%
!!! TTTTACAGTCATTAACATAT+GGG - chr3_4:67493695-67493714 Msa0516070:intron 20.0%
!!! TCAAAAGACTTTACATTTTT+GGG + chr3_4:67493820-67493839 None:intergenic 20.0%
!!! ATCAAAAGACTTTACATTTT+TGG + chr3_4:67493821-67493840 None:intergenic 20.0%
!! CATAAAAATTATTTAGCAGA+CGG + chr3_4:67494184-67494203 None:intergenic 20.0%
!! AAACAATATGAAAGAAATCA+CGG + chr3_4:67495498-67495517 None:intergenic 20.0%
!!! TTTCTTTCATATTGTTTTGT+TGG - chr3_4:67495501-67495520 Msa0516070:CDS 20.0%
!!! ATTTTAGGAACAAAAATTCA+GGG + chr3_4:67495623-67495642 None:intergenic 20.0%
!!! TATTTTAGGAACAAAAATTC+AGG + chr3_4:67495624-67495643 None:intergenic 20.0%
!! CATTACATGAAATTAATAAG+TGG + chr3_4:67495684-67495703 None:intergenic 20.0%
!!! CAATATCACTTTTGTAATTT+AGG - chr3_4:67495758-67495777 Msa0516070:intron 20.0%
!! TTAGATATAGTCTCAAAAAA+TGG + chr3_4:67495809-67495828 None:intergenic 20.0%
!!! ATTTTTTGAGACTATATCTA+AGG - chr3_4:67495808-67495827 Msa0516070:intron 20.0%
!!! ATTGAATTTTTGGTTTAAGA+AGG - chr3_4:67496439-67496458 Msa0516070:intron 20.0%
!!! ACTAAACATGATTGTAATTT+TGG - chr3_4:67496537-67496556 Msa0516070:CDS 20.0%
!!! AAATTTTGCAACAAAATATC+AGG - chr3_4:67496804-67496823 Msa0516070:intron 20.0%
!! TATTGATGTATTGAGTAATT+TGG - chr3_4:67497150-67497169 Msa0516070:intron 20.0%
!! ATTGATGTATTGAGTAATTT+GGG - chr3_4:67497151-67497170 Msa0516070:intron 20.0%
!! GAATTACAAAATAGTTATGA+TGG - chr3_4:67497440-67497459 Msa0516070:intron 20.0%
!!! CACATTTTTAAACACTATAT+AGG + chr3_4:67497678-67497697 None:intergenic 20.0%
!!! ATTTTGTTTATAAATGTGAC+CGG + chr3_4:67497793-67497812 None:intergenic 20.0%
!!! ATTCTAAAATTTTGAATGAG+TGG + chr3_4:67497998-67498017 None:intergenic 20.0%
!! TTAAGTTTCACAATATTACT+AGG + chr3_4:67498245-67498264 None:intergenic 20.0%
!! TAATATTGTGAAACTTAATG+TGG - chr3_4:67498247-67498266 Msa0516070:five_prime_UTR 20.0%
!! TCAACATTAATATTAGAAGA+GGG + chr3_4:67498340-67498359 None:intergenic 20.0%
!! TTCAACATTAATATTAGAAG+AGG + chr3_4:67498341-67498360 None:intergenic 20.0%
!! AATGGCATAGTGTATTTTAT+TGG - chr3_4:67491727-67491746 Msa0516070:three_prime_UTR 25.0%
!! ATGGCATAGTGTATTTTATT+GGG - chr3_4:67491728-67491747 Msa0516070:three_prime_UTR 25.0%
! TTTATTGTTGATACTTTGCT+TGG - chr3_4:67492541-67492560 Msa0516070:three_prime_UTR 25.0%
!!! ACATGTGATTTTGTTTTTTG+GGG - chr3_4:67492569-67492588 Msa0516070:three_prime_UTR 25.0%
!!! TTAATTTTTTGTGTGACAAC+TGG - chr3_4:67492720-67492739 Msa0516070:three_prime_UTR 25.0%
! TGTATTAATTATACAGAGAC+TGG - chr3_4:67492743-67492762 Msa0516070:three_prime_UTR 25.0%
! TGAAGAAAAGGGTTATTTAT+GGG - chr3_4:67492772-67492791 Msa0516070:three_prime_UTR 25.0%
!! AAACAAAAGATTGTTGTTAG+TGG + chr3_4:67493042-67493061 None:intergenic 25.0%
! ATCAAACTTACTACATATTG+AGG - chr3_4:67493423-67493442 Msa0516070:CDS 25.0%
! GTTAATCACTTCTCATTTAT+AGG + chr3_4:67493664-67493683 None:intergenic 25.0%
!!! AAAAGACTTTACATTTTTGG+GGG + chr3_4:67493818-67493837 None:intergenic 25.0%
!! CAAAAGACTTTACATTTTTG+GGG + chr3_4:67493819-67493838 None:intergenic 25.0%
! ACAAAATATTGAAGTAACGT+TGG - chr3_4:67493890-67493909 Msa0516070:intron 25.0%
! TTATCATCTTGACAATGTAT+TGG - chr3_4:67494043-67494062 Msa0516070:intron 25.0%
!!! TTATTTCAGGTTTTAGTTGT+TGG - chr3_4:67494207-67494226 Msa0516070:CDS 25.0%
! TATTTGTGAGATAGATAAGA+TGG - chr3_4:67494290-67494309 Msa0516070:CDS 25.0%
! ATGGTTATTGATGTAAGTTA+TGG - chr3_4:67494309-67494328 Msa0516070:CDS 25.0%
! ATGAAATGAACTTATTGCAA+TGG - chr3_4:67494359-67494378 Msa0516070:intron 25.0%
!!! TATTGCAATGGTTATTTTGT+AGG - chr3_4:67494371-67494390 Msa0516070:intron 25.0%
!! TTACTGGTTACAAACTATTA+AGG - chr3_4:67494527-67494546 Msa0516070:intron 25.0%
! CAGTAAATAATGCACATTAT+TGG - chr3_4:67494708-67494727 Msa0516070:intron 25.0%
! CAGTAAATAATGCACATTAT+TGG - chr3_4:67494708-67494727 Msa0516070:intron 25.0%
!! TCTATATTTTCTCACTAGTA+TGG - chr3_4:67494849-67494868 Msa0516070:intron 25.0%
! AAATTGCTTAACTAGATCAT+TGG - chr3_4:67494872-67494891 Msa0516070:intron 25.0%
!!! TGTGGGTTTTAGATAAAAAA+AGG - chr3_4:67494935-67494954 Msa0516070:intron 25.0%
!!! AGATACTGATTCATATTTGT+AGG - chr3_4:67495020-67495039 Msa0516070:intron 25.0%
!!! GATACTGATTCATATTTGTA+GGG - chr3_4:67495021-67495040 Msa0516070:intron 25.0%
! GATACTCGAAAATTATAAAG+TGG - chr3_4:67495139-67495158 Msa0516070:intron 25.0%
! GAGATACTATTAGATATTGA+AGG - chr3_4:67495199-67495218 Msa0516070:intron 25.0%
!! AGTTAGTTATGTTAGTTTCA+GGG + chr3_4:67495248-67495267 None:intergenic 25.0%
!! TAGTTAGTTATGTTAGTTTC+AGG + chr3_4:67495249-67495268 None:intergenic 25.0%
!!! GTATCTTTTTTGTCTTTGAT+GGG + chr3_4:67495291-67495310 None:intergenic 25.0%
!!! AGTATCTTTTTTGTCTTTGA+TGG + chr3_4:67495292-67495311 None:intergenic 25.0%
! CTGAAATTTCTCATAAATGA+AGG + chr3_4:67495398-67495417 None:intergenic 25.0%
! ATGACTTTAGATTGTTTCAT+TGG - chr3_4:67495420-67495439 Msa0516070:intron 25.0%
! AACAAAAATTCAGGGAAAAT+CGG + chr3_4:67495615-67495634 None:intergenic 25.0%
! TAAAAATAACCAACCAGAAA+AGG + chr3_4:67495727-67495746 None:intergenic 25.0%
! TTTAAATGTTTCTCGACAAA+TGG + chr3_4:67495912-67495931 None:intergenic 25.0%
! ATTTGTCGAGAAACATTTAA+AGG - chr3_4:67495911-67495930 Msa0516070:CDS 25.0%
! GTTTACACTATTCAAATTAC+TGG - chr3_4:67495981-67496000 Msa0516070:intron 25.0%
!!! TAAGGGTAATTTTTTTACAG+TGG - chr3_4:67496098-67496117 Msa0516070:intron 25.0%
!!! AAGGGTAATTTTTTTACAGT+GGG - chr3_4:67496099-67496118 Msa0516070:intron 25.0%
!! ACCATAATCACAAATTTTGT+GGG + chr3_4:67496182-67496201 None:intergenic 25.0%
!! AACCATAATCACAAATTTTG+TGG + chr3_4:67496183-67496202 None:intergenic 25.0%
! ACAAAATTTGTGATTATGGT+TGG - chr3_4:67496182-67496201 Msa0516070:intron 25.0%
!! TTTGTAACATTTTCAACAAG+TGG + chr3_4:67496252-67496271 None:intergenic 25.0%
!! TTTGTAACATTTTCAACAAG+TGG + chr3_4:67496252-67496271 None:intergenic 25.0%
! TATGTATCTGCATAAGAAAA+GGG + chr3_4:67496879-67496898 None:intergenic 25.0%
!!! ATATTATTAGCCTCTTTTTG+TGG - chr3_4:67497094-67497113 Msa0516070:intron 25.0%
! TTACTCAATACATCAATAAC+TGG + chr3_4:67497148-67497167 None:intergenic 25.0%
! TTAAACATCTTGAGTAACAA+AGG + chr3_4:67497589-67497608 None:intergenic 25.0%
! TATCTAATACACTCTTTGTA+TGG - chr3_4:67497631-67497650 Msa0516070:intron 25.0%
! ATCTAATACACTCTTTGTAT+GGG - chr3_4:67497632-67497651 Msa0516070:intron 25.0%
!! AAAATGTGTTAAGAGTATGT+TGG - chr3_4:67497690-67497709 Msa0516070:intron 25.0%
! TACACATTTAGTGTAAAATG+TGG + chr3_4:67497723-67497742 None:intergenic 25.0%
! AGTCATTCAATAAACCTAAA+AGG + chr3_4:67497820-67497839 None:intergenic 25.0%
TTCTCCACATGAAAGAAAAT+GGG + chr3_4:67491817-67491836 None:intergenic 30.0%
ATTCTCCACATGAAAGAAAA+TGG + chr3_4:67491818-67491837 None:intergenic 30.0%
ATCAACATGTATGTACTTGA+TGG - chr3_4:67492187-67492206 Msa0516070:three_prime_UTR 30.0%
AAATTAAGGCAATTGTAGCA+TGG + chr3_4:67492223-67492242 None:intergenic 30.0%
! CTTTTAAGCTTTGCTAAACT+GGG - chr3_4:67492516-67492535 Msa0516070:three_prime_UTR 30.0%
!!! CATGTGATTTTGTTTTTTGG+GGG - chr3_4:67492570-67492589 Msa0516070:three_prime_UTR 30.0%
TCATTCTCTGTTCTGTTATT+TGG - chr3_4:67492610-67492629 Msa0516070:three_prime_UTR 30.0%
! TAAATAACCCTTTTCTTCAC+TGG + chr3_4:67492771-67492790 None:intergenic 30.0%
GTGAAGAAAAGGGTTATTTA+TGG - chr3_4:67492771-67492790 Msa0516070:three_prime_UTR 30.0%
GAAGAAAAGGGTTATTTATG+GGG - chr3_4:67492773-67492792 Msa0516070:three_prime_UTR 30.0%
AAGAAAAGGGTTATTTATGG+GGG - chr3_4:67492774-67492793 Msa0516070:three_prime_UTR 30.0%
GAAAGGAAATGGGAAATATA+TGG + chr3_4:67493015-67493034 None:intergenic 30.0%
! AAAGATTGTTGTTAGTGGAA+TGG + chr3_4:67493037-67493056 None:intergenic 30.0%
TTTATTTCAACAACCCAATG+TGG - chr3_4:67493105-67493124 Msa0516070:three_prime_UTR 30.0%
TTCATGTATACTTGCAACTT+TGG - chr3_4:67493166-67493185 Msa0516070:three_prime_UTR 30.0%
! TTGAAAATAACTTTTGGCCA+AGG - chr3_4:67493371-67493390 Msa0516070:intron 30.0%
! AACATTTAGTTTATCCTCCT+TGG + chr3_4:67493391-67493410 None:intergenic 30.0%
CTTCTCTACTTTGATTGAAT+GGG + chr3_4:67493553-67493572 None:intergenic 30.0%
TCTTCTCTACTTTGATTGAA+TGG + chr3_4:67493554-67493573 None:intergenic 30.0%
ACAGTTCTCTATTATCACTT+AGG - chr3_4:67493928-67493947 Msa0516070:intron 30.0%
CAGTTCTCTATTATCACTTA+GGG - chr3_4:67493929-67493948 Msa0516070:intron 30.0%
AGTTCTCTATTATCACTTAG+GGG - chr3_4:67493930-67493949 Msa0516070:intron 30.0%
!! TCTTGACAATGTATTGGTTA+TGG - chr3_4:67494049-67494068 Msa0516070:intron 30.0%
GAGACTGACTAAAATTTGAA+AGG - chr3_4:67494109-67494128 Msa0516070:intron 30.0%
AAAAATTATTTAGCAGACGG+TGG + chr3_4:67494181-67494200 None:intergenic 30.0%
!! TGGTTATTTTGTAGGTTTCT+AGG - chr3_4:67494379-67494398 Msa0516070:intron 30.0%
CAGTAAATTAAAGCCATAGT+TGG + chr3_4:67494513-67494532 None:intergenic 30.0%
!! CAACTATGGCTTTAATTTAC+TGG - chr3_4:67494511-67494530 Msa0516070:intron 30.0%
ATTCAATAGCTGGCAAAAAT+GGG + chr3_4:67494586-67494605 None:intergenic 30.0%
AATTCAATAGCTGGCAAAAA+TGG + chr3_4:67494587-67494606 None:intergenic 30.0%
CGTTTAAGAAATTCAATAGC+TGG + chr3_4:67494596-67494615 None:intergenic 30.0%
ATCTGAGGAATCAACAATTA+CGG + chr3_4:67494642-67494661 None:intergenic 30.0%
AATTTAAATTACTCACCCAC+AGG + chr3_4:67494665-67494684 None:intergenic 30.0%
! ATGAAAAAAGTCGTGTTTTG+AGG - chr3_4:67494822-67494841 Msa0516070:intron 30.0%
TGTGTTAGATTGAGATACAA+GGG + chr3_4:67494904-67494923 None:intergenic 30.0%
TGGTCTAATGAGATAAACTA+AGG - chr3_4:67495159-67495178 Msa0516070:intron 30.0%
ATATTGAAGGAGTTTGAAAG+AGG - chr3_4:67495212-67495231 Msa0516070:intron 30.0%
! GTTAGTTATGTTAGTTTCAG+GGG + chr3_4:67495247-67495266 None:intergenic 30.0%
!! TTTCATATTGTTTTGTTGGC+TGG - chr3_4:67495505-67495524 Msa0516070:CDS 30.0%
ACATGTAGAAACAGAAAACT+TGG + chr3_4:67496070-67496089 None:intergenic 30.0%
TCCCACAAAATTTGTGATTA+TGG - chr3_4:67496178-67496197 Msa0516070:intron 30.0%
! AGATTTTTACTTGCCTAGTT+TGG - chr3_4:67496466-67496485 Msa0516070:intron 30.0%
ATCATGTTTAGTAACTGTCA+GGG + chr3_4:67496529-67496548 None:intergenic 30.0%
AATCATGTTTAGTAACTGTC+AGG + chr3_4:67496530-67496549 None:intergenic 30.0%
! TTGGTTCATCTTGATAGTAT+TGG - chr3_4:67496556-67496575 Msa0516070:CDS 30.0%
TGCTTATTGTATTCCTTTCT+TGG - chr3_4:67496590-67496609 Msa0516070:CDS 30.0%
! AACTTTTCAATGGGATTGAT+GGG + chr3_4:67496681-67496700 None:intergenic 30.0%
! TAACTTTTCAATGGGATTGA+TGG + chr3_4:67496682-67496701 None:intergenic 30.0%
AATCCCATTGAAAAGTTAGA+AGG - chr3_4:67496684-67496703 Msa0516070:intron 30.0%
ATAACTCAGAGGTAAGTATA+TGG - chr3_4:67496739-67496758 Msa0516070:intron 30.0%
GTATGTATCTGCATAAGAAA+AGG + chr3_4:67496880-67496899 None:intergenic 30.0%
TAGATTATTGTGGGAGAAAT+AGG - chr3_4:67497000-67497019 Msa0516070:intron 30.0%
TTAAACACAACCACAAAAAG+AGG + chr3_4:67497107-67497126 None:intergenic 30.0%
ACATAGCAAGTGTGTTTAAA+TGG - chr3_4:67497230-67497249 Msa0516070:CDS 30.0%
! CTTTTGTGAATCTGTAATGT+GGG - chr3_4:67497253-67497272 Msa0516070:CDS 30.0%
!!! TGAGATTTTGGTTGAATTTG+CGG - chr3_4:67497293-67497312 Msa0516070:CDS 30.0%
TCACATTTGAAGATGAAAGT+GGG - chr3_4:67497379-67497398 Msa0516070:intron 30.0%
TGAGTAACAAAGGAAATTCA+TGG + chr3_4:67497579-67497598 None:intergenic 30.0%
ATCTTTCAATATACTCTCTC+CGG - chr3_4:67497771-67497790 Msa0516070:intron 30.0%
TTGTTTATAAATGTGATCGG+AGG - chr3_4:67497905-67497924 Msa0516070:intron 30.0%
TGTTTATAAATGTGATCGGA+GGG - chr3_4:67497906-67497925 Msa0516070:intron 30.0%
! TACCAAAACTTTTTGTCGAA+AGG + chr3_4:67498171-67498190 None:intergenic 30.0%
AGTTTCACAATATTACTAGG+AGG + chr3_4:67498242-67498261 None:intergenic 30.0%
TCCAATTAACTAATCACAAC+CGG + chr3_4:67498309-67498328 None:intergenic 30.0%
GAATTACATGCAATCTCTTA+TGG - chr3_4:67498358-67498377 Msa0516070:five_prime_UTR 30.0%
! GCATAGTGTATTTTATTGGG+TGG - chr3_4:67491731-67491750 Msa0516070:three_prime_UTR 35.0%
! AATCCCCATTTTCTTTCATG+TGG - chr3_4:67491810-67491829 Msa0516070:three_prime_UTR 35.0%
TCTCCACATGAAAGAAAATG+GGG + chr3_4:67491816-67491835 None:intergenic 35.0%
GTTCTTTGATTGCTTCTTCT+GGG + chr3_4:67491882-67491901 None:intergenic 35.0%
AGTTCTTTGATTGCTTCTTC+TGG + chr3_4:67491883-67491902 None:intergenic 35.0%
AAAAACGAAACAGAGAGAAG+AGG + chr3_4:67491982-67492001 None:intergenic 35.0%
TTTATTGAGCGCAACTACTA+GGG + chr3_4:67492025-67492044 None:intergenic 35.0%
! TTAATTTTCCCCCCTTTTTC+TGG - chr3_4:67492357-67492376 Msa0516070:three_prime_UTR 35.0%
AAAACAAGCCACCAGAAAAA+GGG + chr3_4:67492371-67492390 None:intergenic 35.0%
! GCTTTTAAGCTTTGCTAAAC+TGG - chr3_4:67492515-67492534 Msa0516070:three_prime_UTR 35.0%
ATGGCTTTCAAACAACATGA+AGG + chr3_4:67492880-67492899 None:intergenic 35.0%
! TTCATGTTGTTTGAAAGCCA+TGG - chr3_4:67492879-67492898 Msa0516070:three_prime_UTR 35.0%
TAGTGGAATGGAAAGGAAAT+GGG + chr3_4:67493025-67493044 None:intergenic 35.0%
TTAGTGGAATGGAAAGGAAA+TGG + chr3_4:67493026-67493045 None:intergenic 35.0%
! TTGTTGTTAGTGGAATGGAA+AGG + chr3_4:67493032-67493051 None:intergenic 35.0%
!! CAATCTTTTGTTTCATCGTG+TGG - chr3_4:67493049-67493068 Msa0516070:three_prime_UTR 35.0%
TATGCAAAATAACAGTCACC+TGG + chr3_4:67493131-67493150 None:intergenic 35.0%
!!! GGTGACTGTTATTTTGCATA+TGG - chr3_4:67493131-67493150 Msa0516070:three_prime_UTR 35.0%
ATATTCATCCTTCTCCATGA+AGG + chr3_4:67493312-67493331 None:intergenic 35.0%
TTCATGGAGAAGGATGAATA+TGG - chr3_4:67493311-67493330 Msa0516070:intron 35.0%
TCATGGAGAAGGATGAATAT+GGG - chr3_4:67493312-67493331 Msa0516070:intron 35.0%
! AAAATAACTTTTGGCCAAGG+AGG - chr3_4:67493374-67493393 Msa0516070:intron 35.0%
! TTTGGTGTGTGTCTATCATT+AGG - chr3_4:67493522-67493541 Msa0516070:intron 35.0%
GGAAAGTTCTTGTACTTGAT+GGG - chr3_4:67493716-67493735 Msa0516070:intron 35.0%
GATTGTTCAGTTGACTGAAA+AGG - chr3_4:67493738-67493757 Msa0516070:intron 35.0%
TGATCTGATCATCAGTGTAT+TGG - chr3_4:67493837-67493856 Msa0516070:intron 35.0%
GATCTGATCATCAGTGTATT+GGG - chr3_4:67493838-67493857 Msa0516070:intron 35.0%
TTGAGACTGCTGAATATCAA+AGG + chr3_4:67493982-67494001 None:intergenic 35.0%
! CCATACACATATAAGAGCAT+TGG + chr3_4:67494077-67494096 None:intergenic 35.0%
CCAATGCTCTTATATGTGTA+TGG - chr3_4:67494074-67494093 Msa0516070:intron 35.0%
ATGCTCTTATATGTGTATGG+AGG - chr3_4:67494077-67494096 Msa0516070:intron 35.0%
TGGAAACAGTATGGGAAAAA+AGG + chr3_4:67494161-67494180 None:intergenic 35.0%
!!! TTTCAGGTTTTAGTTGTTGG+TGG - chr3_4:67494210-67494229 Msa0516070:CDS 35.0%
!!! TTTTTTCCAGAGTTAGCTGT+TGG - chr3_4:67494405-67494424 Msa0516070:intron 35.0%
! TTTTTCCAGAGTTAGCTGTT+GGG - chr3_4:67494406-67494425 Msa0516070:intron 35.0%
!! GTTTGTTATCATGCCAACTA+TGG - chr3_4:67494497-67494516 Msa0516070:intron 35.0%
!!! AAAAAAGTCGTGTTTTGAGG+AGG - chr3_4:67494825-67494844 Msa0516070:intron 35.0%
TAGATTGAGATACAAGGGTT+GGG + chr3_4:67494899-67494918 None:intergenic 35.0%
TTAGATTGAGATACAAGGGT+TGG + chr3_4:67494900-67494919 None:intergenic 35.0%
GTGTGTTAGATTGAGATACA+AGG + chr3_4:67494905-67494924 None:intergenic 35.0%
! TAACACACTTTTCGAAGTTG+TGG - chr3_4:67494917-67494936 Msa0516070:intron 35.0%
! AACACACTTTTCGAAGTTGT+GGG - chr3_4:67494918-67494937 Msa0516070:intron 35.0%
AACAGAGCTGATATGAATAG+TGG + chr3_4:67495354-67495373 None:intergenic 35.0%
! ATATCTAAGGCATTAAGACC+CGG - chr3_4:67495821-67495840 Msa0516070:intron 35.0%
ATATTACAAAGAACTCCACC+GGG + chr3_4:67495842-67495861 None:intergenic 35.0%
CATATTACAAAGAACTCCAC+CGG + chr3_4:67495843-67495862 None:intergenic 35.0%
! GTAATATGGCAGAAAGTATG+TGG - chr3_4:67495855-67495874 Msa0516070:CDS 35.0%
AAGGTTCTGTACATTATGCA+TGG - chr3_4:67495930-67495949 Msa0516070:intron 35.0%
AGGTTCTGTACATTATGCAT+GGG - chr3_4:67495931-67495950 Msa0516070:intron 35.0%
AAACTCTACCTTGGATATGT+TGG + chr3_4:67495965-67495984 None:intergenic 35.0%
GAATAGTGTAAACTCTACCT+TGG + chr3_4:67495974-67495993 None:intergenic 35.0%
TTCTACATGTTGTGAGAGTA+AGG - chr3_4:67496080-67496099 Msa0516070:intron 35.0%
TCTACATGTTGTGAGAGTAA+GGG - chr3_4:67496081-67496100 Msa0516070:intron 35.0%
ATTACTGAAGATCCATCAGT+GGG + chr3_4:67496152-67496171 None:intergenic 35.0%
AATTACTGAAGATCCATCAG+TGG + chr3_4:67496153-67496172 None:intergenic 35.0%
! GTGTTGCTGGAAAAATTCAT+AGG - chr3_4:67496206-67496225 Msa0516070:intron 35.0%
TTTCACATTACCTTCTTGAG+AGG - chr3_4:67496401-67496420 Msa0516070:CDS 35.0%
ACTAGGCAAGTAAAAATCTC+AGG + chr3_4:67496465-67496484 None:intergenic 35.0%
!!! TTGGCATTTTGGAACAGTAT+AGG - chr3_4:67496485-67496504 Msa0516070:intron 35.0%
!!! TGGCATTTTGGAACAGTATA+GGG - chr3_4:67496486-67496505 Msa0516070:intron 35.0%
TTTCTTCTATGCTCAACAGA+GGG - chr3_4:67496633-67496652 Msa0516070:intron 35.0%
! ACTTTTCAATGGGATTGATG+GGG + chr3_4:67496680-67496699 None:intergenic 35.0%
! GCACCTTCTAACTTTTCAAT+GGG + chr3_4:67496690-67496709 None:intergenic 35.0%
! AGCACCTTCTAACTTTTCAA+TGG + chr3_4:67496691-67496710 None:intergenic 35.0%
TCTTAGGTTCTATAACTCAG+AGG - chr3_4:67496728-67496747 Msa0516070:intron 35.0%
TCTTATGCAGATACATACAG+CGG - chr3_4:67496882-67496901 Msa0516070:intron 35.0%
TATTGTACCACTAGTCATCT+GGG - chr3_4:67496973-67496992 Msa0516070:intron 35.0%
TCTGGGGAAATAGATTATTG+TGG - chr3_4:67496990-67497009 Msa0516070:intron 35.0%
CTGGGGAAATAGATTATTGT+GGG - chr3_4:67496991-67497010 Msa0516070:intron 35.0%
ATGACATAAATAATCACGCC+TGG + chr3_4:67497028-67497047 None:intergenic 35.0%
GAGTTCAACAAGGCTTAAAT+GGG + chr3_4:67497068-67497087 None:intergenic 35.0%
AGAGTTCAACAAGGCTTAAA+TGG + chr3_4:67497069-67497088 None:intergenic 35.0%
!! ATTTAAGCCTTGTTGAACTC+TGG - chr3_4:67497068-67497087 Msa0516070:intron 35.0%
!! TTTAAGCCTTGTTGAACTCT+GGG - chr3_4:67497069-67497088 Msa0516070:intron 35.0%
! TATTGAGTAATTTGGGATGC+AGG - chr3_4:67497158-67497177 Msa0516070:intron 35.0%
! ATTGAGTAATTTGGGATGCA+GGG - chr3_4:67497159-67497178 Msa0516070:intron 35.0%
! GCTTTTGTGAATCTGTAATG+TGG - chr3_4:67497252-67497271 Msa0516070:CDS 35.0%
AACCAAAATCTCATCCAACT+CGG + chr3_4:67497286-67497305 None:intergenic 35.0%
AAAGCAAGAGTTTGTACCAA+CGG + chr3_4:67497328-67497347 None:intergenic 35.0%
TTGGTACAAACTCTTGCTTT+GGG - chr3_4:67497328-67497347 Msa0516070:CDS 35.0%
TCAAATGTGACAAAGTTCCA+TGG + chr3_4:67497369-67497388 None:intergenic 35.0%
GTCACATTTGAAGATGAAAG+TGG - chr3_4:67497378-67497397 Msa0516070:five_prime_UTR 35.0%
ATTTGAAGATGAAAGTGGGA+AGG - chr3_4:67497383-67497402 Msa0516070:intron 35.0%
TTTGAAGATGAAAGTGGGAA+GGG - chr3_4:67497384-67497403 Msa0516070:intron 35.0%
GATGGTGAGAGTAAAATCTA+TGG - chr3_4:67497458-67497477 Msa0516070:intron 35.0%
AATCAAAAGTCAGAAGTTGC+AGG - chr3_4:67498073-67498092 Msa0516070:intron 35.0%
AGTATCCAAACTCTCAATAG+TGG + chr3_4:67498123-67498142 None:intergenic 35.0%
! GTCGAAAGGTCTTGTATAAT+TGG + chr3_4:67498157-67498176 None:intergenic 35.0%
! GACCTTTCGACAAAAAGTTT+TGG - chr3_4:67498166-67498185 Msa0516070:intron 35.0%
ATTTGTGTAACCGTTTCATG+TGG - chr3_4:67498190-67498209 Msa0516070:intron 35.0%
CAGACGATATTTACACTCAT+AGG - chr3_4:67498214-67498233 Msa0516070:five_prime_UTR 35.0%
TTTGATTGTGACTTGAGCAA+TGG - chr3_4:67498381-67498400 Msa0516070:five_prime_UTR 35.0%
! GTGTATTTTATTGGGTGGCA+AGG - chr3_4:67491736-67491755 Msa0516070:three_prime_UTR 40.0%
CAAGGCAACATCAACATCAA+GGG - chr3_4:67491754-67491773 Msa0516070:three_prime_UTR 40.0%
AAGGCAACATCAACATCAAG+GGG - chr3_4:67491755-67491774 Msa0516070:three_prime_UTR 40.0%
! GCTTCTTCTGGGAACAAAAA+TGG + chr3_4:67491871-67491890 None:intergenic 40.0%
GTTTATTGAGCGCAACTACT+AGG + chr3_4:67492026-67492045 None:intergenic 40.0%
AAACAAGCCACCAGAAAAAG+GGG + chr3_4:67492370-67492389 None:intergenic 40.0%
CAAAACAAGCCACCAGAAAA+AGG + chr3_4:67492372-67492391 None:intergenic 40.0%
! TGACAAAGAGTACAGAACAC+AGG + chr3_4:67492431-67492450 None:intergenic 40.0%
TGAGCTTATGTCTAAGCGAA+AGG - chr3_4:67492659-67492678 Msa0516070:three_prime_UTR 40.0%
GCATTCCAAACCTCTTTCTA+CGG + chr3_4:67492803-67492822 None:intergenic 40.0%
! TTTGGAATGCCAGAAGACTA+TGG - chr3_4:67492813-67492832 Msa0516070:three_prime_UTR 40.0%
AATGCCAGAAGACTATGGAT+GGG - chr3_4:67492818-67492837 Msa0516070:three_prime_UTR 40.0%
! TAACAGGAATGGTTTGGAGA+AGG - chr3_4:67492849-67492868 Msa0516070:three_prime_UTR 40.0%
AACAACGGTAGAGTGACAAT+TGG + chr3_4:67492926-67492945 None:intergenic 40.0%
TTGTCACTCTACCGTTGTTT+CGG - chr3_4:67492927-67492946 Msa0516070:three_prime_UTR 40.0%
CATGGAGAAGGATGAATATG+GGG - chr3_4:67493313-67493332 Msa0516070:intron 40.0%
ATGGAGAAGGATGAATATGG+GGG - chr3_4:67493314-67493333 Msa0516070:intron 40.0%
! CTTGGTACAGTGACTTTTCT+TGG + chr3_4:67493584-67493603 None:intergenic 40.0%
AGAAAAGTCACTGTACCAAG+AGG - chr3_4:67493584-67493603 Msa0516070:intron 40.0%
!!! AGGTCTTGGTTTTTGAGGTA+TGG - chr3_4:67493604-67493623 Msa0516070:intron 40.0%
GGGAAAGTTCTTGTACTTGA+TGG - chr3_4:67493715-67493734 Msa0516070:intron 40.0%
AAAGGATGAATGTGCTTACC+AGG - chr3_4:67493756-67493775 Msa0516070:intron 40.0%
!! GACTTTACATTTTTGGGGGA+CGG + chr3_4:67493814-67493833 None:intergenic 40.0%
AATAGCTGGCAAAAATGGGT+GGG + chr3_4:67494582-67494601 None:intergenic 40.0%
TTTCTTAAACGTGCACCTGA+AGG - chr3_4:67494605-67494624 Msa0516070:intron 40.0%
TTCTTAAACGTGCACCTGAA+GGG - chr3_4:67494606-67494625 Msa0516070:intron 40.0%
AGATTGAGATACAAGGGTTG+GGG + chr3_4:67494898-67494917 None:intergenic 40.0%
TTGAAGGAGTTTGAAAGAGG+AGG - chr3_4:67495215-67495234 Msa0516070:intron 40.0%
!! CATATTGTTTTGTTGGCTGG+TGG - chr3_4:67495508-67495527 Msa0516070:CDS 40.0%
TGGTTTCTCTACAAGTTCCT+GGG + chr3_4:67495789-67495808 None:intergenic 40.0%
ATGGTTTCTCTACAAGTTCC+TGG + chr3_4:67495790-67495809 None:intergenic 40.0%
CGGTGGAGTTCTTTGTAATA+TGG - chr3_4:67495841-67495860 Msa0516070:CDS 40.0%
! TGGAGAGCATGTCTTGAATA+AGG + chr3_4:67495892-67495911 None:intergenic 40.0%
CAAGTGTTCCAACATATCCA+AGG - chr3_4:67495954-67495973 Msa0516070:intron 40.0%
GTGGGATCAACTTTATCATG+AGG + chr3_4:67496134-67496153 None:intergenic 40.0%
! GATAAAGTTGATCCCACTGA+TGG - chr3_4:67496137-67496156 Msa0516070:intron 40.0%
TGCAACGTGACAAACCAAAA+AGG + chr3_4:67496354-67496373 None:intergenic 40.0%
ATGAGTGTGCTTAAAGGTTG+TGG - chr3_4:67496373-67496392 Msa0516070:CDS 40.0%
CAAAGTGAATCCTCTCAAGA+AGG + chr3_4:67496414-67496433 None:intergenic 40.0%
! ACTTGCCTAGTTTGGCATTT+TGG - chr3_4:67496474-67496493 Msa0516070:intron 40.0%
CTGTTCCAAAATGCCAAACT+AGG + chr3_4:67496482-67496501 None:intergenic 40.0%
!!! GGCATTTTGGAACAGTATAG+GGG - chr3_4:67496487-67496506 Msa0516070:intron 40.0%
ATTCCTTTCTTGGTATGCAG+TGG - chr3_4:67496600-67496619 Msa0516070:intron 40.0%
GTTTCTTCTATGCTCAACAG+AGG - chr3_4:67496632-67496651 Msa0516070:intron 40.0%
TTCTTCTATGCTCAACAGAG+GGG - chr3_4:67496634-67496653 Msa0516070:intron 40.0%
GGGTTCACAAAATCAACATG+CGG + chr3_4:67496660-67496679 None:intergenic 40.0%
!! TAGAAGGTGCTGATAAGCAT+CGG - chr3_4:67496700-67496719 Msa0516070:intron 40.0%
!! ATAAGCATCGGAGGAATCTT+AGG - chr3_4:67496712-67496731 Msa0516070:intron 40.0%
GTAAGATCTTTCTTGCATGC+AGG + chr3_4:67496854-67496873 None:intergenic 40.0%
ACCTCATTCTTCAGAAATGC+AGG + chr3_4:67496919-67496938 None:intergenic 40.0%
! CATTTCTGAAGAATGAGGTG+AGG - chr3_4:67496920-67496939 Msa0516070:intron 40.0%
GTATTGTACCACTAGTCATC+TGG - chr3_4:67496972-67496991 Msa0516070:intron 40.0%
ATTGTACCACTAGTCATCTG+GGG - chr3_4:67496974-67496993 Msa0516070:intron 40.0%
ATATTGCCCAGAGTTCAACA+AGG + chr3_4:67497078-67497097 None:intergenic 40.0%
GAATCTGTAATGTGGGATAG+TGG - chr3_4:67497260-67497279 Msa0516070:CDS 40.0%
TTTGCGGTGTTTATTACCGT+TGG - chr3_4:67497309-67497328 Msa0516070:CDS 40.0%
GTTGGTACAAACTCTTGCTT+TGG - chr3_4:67497327-67497346 Msa0516070:CDS 40.0%
TGGTACAAACTCTTGCTTTG+GGG - chr3_4:67497329-67497348 Msa0516070:CDS 40.0%
TGTATGGGACTCCAATGATT+TGG - chr3_4:67497647-67497666 Msa0516070:intron 40.0%
AAGTCAGAAGTTGCAGGAAA+AGG - chr3_4:67498079-67498098 Msa0516070:intron 40.0%
CAAAGCCACTATTGAGAGTT+TGG - chr3_4:67498115-67498134 Msa0516070:intron 40.0%
TATCGTCTGTCCACATGAAA+CGG + chr3_4:67498203-67498222 None:intergenic 40.0%
TGTGAAACTTAATGTGGACG+AGG - chr3_4:67498253-67498272 Msa0516070:five_prime_UTR 40.0%
AAAACTCTTTCAACAACCCG+AGG - chr3_4:67498279-67498298 Msa0516070:five_prime_UTR 40.0%
! GCCGGTTGTGATTAGTTAAT+TGG - chr3_4:67498305-67498324 Msa0516070:five_prime_UTR 40.0%
ATTGTGACTTGAGCAATGGT+AGG - chr3_4:67498385-67498404 Msa0516070:five_prime_UTR 40.0%
GCAAGGCAACATCAACATCA+AGG - chr3_4:67491753-67491772 Msa0516070:three_prime_UTR 45.0%
AGGCAACATCAACATCAAGG+GGG - chr3_4:67491756-67491775 Msa0516070:three_prime_UTR 45.0%
!! GGGTGTTGTTGATAGAAACG+CGG + chr3_4:67491919-67491938 None:intergenic 45.0%
TCTGGTGTGAATGTCAGTGA+GGG + chr3_4:67491939-67491958 None:intergenic 45.0%
ACAGAGAGAAGAGGAGTGAA+GGG + chr3_4:67491973-67491992 None:intergenic 45.0%
AACAGAGAGAAGAGGAGTGA+AGG + chr3_4:67491974-67491993 None:intergenic 45.0%
! ATTTTCCCCCCTTTTTCTGG+TGG - chr3_4:67492360-67492379 Msa0516070:three_prime_UTR 45.0%
AACAAGCCACCAGAAAAAGG+GGG + chr3_4:67492369-67492388 None:intergenic 45.0%
ACTGGAGCCAGTGAAGAAAA+GGG - chr3_4:67492761-67492780 Msa0516070:three_prime_UTR 45.0%
GAATGCCAGAAGACTATGGA+TGG - chr3_4:67492817-67492836 Msa0516070:three_prime_UTR 45.0%
! TGTCACTCTACCGTTGTTTC+GGG - chr3_4:67492928-67492947 Msa0516070:three_prime_UTR 45.0%
! TCAGCATCTCAAACTTGCTC+TGG - chr3_4:67492958-67492977 Msa0516070:three_prime_UTR 45.0%
TTGATACAACCGAGCCTTCA+TGG - chr3_4:67493295-67493314 Msa0516070:intron 45.0%
AGAAGGATGAATATGGGGGT+GGG - chr3_4:67493318-67493337 Msa0516070:intron 45.0%
GTGTATATGACGGTTGCTGA+TGG - chr3_4:67493498-67493517 Msa0516070:CDS 45.0%
! ATGACGGTTGCTGATGGTTT+TGG - chr3_4:67493504-67493523 Msa0516070:CDS 45.0%
CCTCAAAAACCAAGACCTCT+TGG + chr3_4:67493602-67493621 None:intergenic 45.0%
!! CCAAGAGGTCTTGGTTTTTG+AGG - chr3_4:67493599-67493618 Msa0516070:intron 45.0%
!! TACATTTTTGGGGGACGGAA+TGG + chr3_4:67493809-67493828 None:intergenic 45.0%
!!! CAGGTTTTAGTTGTTGGTGG+TGG - chr3_4:67494213-67494232 Msa0516070:CDS 45.0%
!! TTAGTTGTTGGTGGTGGAGA+TGG - chr3_4:67494219-67494238 Msa0516070:CDS 45.0%
TCAAACCCAACAGCTAACTC+TGG + chr3_4:67494414-67494433 None:intergenic 45.0%
! GTACACTTGCATGTTGGTGA+TGG - chr3_4:67494444-67494463 Msa0516070:intron 45.0%
CAATAGCTGGCAAAAATGGG+TGG + chr3_4:67494583-67494602 None:intergenic 45.0%
!! TGTTGATTCCTCAGATCCTG+TGG - chr3_4:67494646-67494665 Msa0516070:intron 45.0%
! GTTGATTCCTCAGATCCTGT+GGG - chr3_4:67494647-67494666 Msa0516070:intron 45.0%
TGGGCAAATGTTAGCAGTGT+TGG + chr3_4:67495272-67495291 None:intergenic 45.0%
GGAAAATCGGAGCAAAACGA+AGG + chr3_4:67495602-67495621 None:intergenic 45.0%
TTGTAATTTAGGTCCTGCCC+AGG - chr3_4:67495769-67495788 Msa0516070:intron 45.0%
! GATTATGGTTGGTGTGTTGC+TGG - chr3_4:67496193-67496212 Msa0516070:intron 45.0%
!! GCAGTTGATCCTAGCCTTTT+TGG - chr3_4:67496337-67496356 Msa0516070:CDS 45.0%
CGTGACAAACCAAAAAGGCT+AGG + chr3_4:67496349-67496368 None:intergenic 45.0%
CGTTGCATGAGTGTGCTTAA+AGG - chr3_4:67496367-67496386 Msa0516070:CDS 45.0%
GTGTGCTTAAAGGTTGTGGT+AGG - chr3_4:67496377-67496396 Msa0516070:CDS 45.0%
GTTTAGTAACTGTCAGGGCA+CGG + chr3_4:67496524-67496543 None:intergenic 45.0%
ACACCACTGCATACCAAGAA+AGG + chr3_4:67496606-67496625 None:intergenic 45.0%
TTGGTATGCAGTGGTGTGAT+AGG - chr3_4:67496609-67496628 Msa0516070:intron 45.0%
TGGTATGCAGTGGTGTGATA+GGG - chr3_4:67496610-67496629 Msa0516070:intron 45.0%
! GCCTGCATTTCTGAAGAATG+AGG - chr3_4:67496915-67496934 Msa0516070:intron 45.0%
! CAAGCAAGCATTGCTACTGA+CGG + chr3_4:67496951-67496970 None:intergenic 45.0%
CTATTTCCCCAGATGACTAG+TGG + chr3_4:67496983-67497002 None:intergenic 45.0%
TTGTGGGAGAAATAGGTACC+AGG - chr3_4:67497007-67497026 Msa0516070:intron 45.0%
! AATGGGTTCACAGACGGAAT+TGG + chr3_4:67497051-67497070 None:intergenic 45.0%
! GGCTTAAATGGGTTCACAGA+CGG + chr3_4:67497057-67497076 None:intergenic 45.0%
AGTAGCAGACGAGTAAGCAA+CGG - chr3_4:67497495-67497514 Msa0516070:intron 45.0%
TATAGGCCGCACCAAATCAT+TGG + chr3_4:67497661-67497680 None:intergenic 45.0%
! ATAGTGGCTTTGCATGGCAA+CGG + chr3_4:67498107-67498126 None:intergenic 45.0%
! CTCTCAATAGTGGCTTTGCA+TGG + chr3_4:67498113-67498132 None:intergenic 45.0%
!! GTATTAAAAATATTAAATTA+AGG + chr3_4:67492237-67492256 None:intergenic 5.0%
!! TATAAAAAAGTTAAAAATTT+AGG - chr3_4:67496315-67496334 Msa0516070:intron 5.0%
GTCTGGTGTGAATGTCAGTG+AGG + chr3_4:67491940-67491959 None:intergenic 50.0%
CACTGACATTCACACCAGAC+AGG - chr3_4:67491940-67491959 Msa0516070:three_prime_UTR 50.0%
GAGCGCAACTACTAGGGTTT+AGG + chr3_4:67492019-67492038 None:intergenic 50.0%
ACAAGCCACCAGAAAAAGGG+GGG + chr3_4:67492368-67492387 None:intergenic 50.0%
GACTGGAGCCAGTGAAGAAA+AGG - chr3_4:67492760-67492779 Msa0516070:three_prime_UTR 50.0%
CCTTCCCATCCATAGTCTTC+TGG + chr3_4:67492825-67492844 None:intergenic 50.0%
CCAGAAGACTATGGATGGGA+AGG - chr3_4:67492822-67492841 Msa0516070:three_prime_UTR 50.0%
GGCGAGTAACAGGAATGGTT+TGG - chr3_4:67492843-67492862 Msa0516070:three_prime_UTR 50.0%
! ACAATTGGCCTCCAACTCAG+GGG + chr3_4:67492911-67492930 None:intergenic 50.0%
! GACAATTGGCCTCCAACTCA+GGG + chr3_4:67492912-67492931 None:intergenic 50.0%
! TGACAATTGGCCTCCAACTC+AGG + chr3_4:67492913-67492932 None:intergenic 50.0%
! GTCACTCTACCGTTGTTTCG+GGG - chr3_4:67492929-67492948 Msa0516070:three_prime_UTR 50.0%
TGAGAACCACCCCGAAACAA+CGG + chr3_4:67492941-67492960 None:intergenic 50.0%
TTCAACAACCCAATGTGGCC+AGG - chr3_4:67493110-67493129 Msa0516070:three_prime_UTR 50.0%
AACAGTCACCTGGCCACATT+GGG + chr3_4:67493121-67493140 None:intergenic 50.0%
TAACAGTCACCTGGCCACAT+TGG + chr3_4:67493122-67493141 None:intergenic 50.0%
CATCCTTCTCCATGAAGGCT+CGG + chr3_4:67493307-67493326 None:intergenic 50.0%
GAGAAGGATGAATATGGGGG+TGG - chr3_4:67493317-67493336 Msa0516070:intron 50.0%
GAAGGATGAATATGGGGGTG+GGG - chr3_4:67493319-67493338 Msa0516070:intron 50.0%
AAGGATGAATATGGGGGTGG+GGG - chr3_4:67493320-67493339 Msa0516070:intron 50.0%
GTCACTGTACCAAGAGGTCT+TGG - chr3_4:67493590-67493609 Msa0516070:intron 50.0%
GGAGATGAGCTATCATCTCC+TGG + chr3_4:67493777-67493796 None:intergenic 50.0%
GCAGACGGTGGAAACAGTAT+GGG + chr3_4:67494169-67494188 None:intergenic 50.0%
AGCAGACGGTGGAAACAGTA+TGG + chr3_4:67494170-67494189 None:intergenic 50.0%
!! TTGTTGGTGGTGGAGATGGT+GGG - chr3_4:67494223-67494242 Msa0516070:CDS 50.0%
!! TGGAGATGGTGGGGTTCTAA+GGG - chr3_4:67494233-67494252 Msa0516070:CDS 50.0%
CAATATGCTCCACAGAGCTG+TGG + chr3_4:67494269-67494288 None:intergenic 50.0%
CCAACATGCAAGTGTACACG+AGG + chr3_4:67494441-67494460 None:intergenic 50.0%
CCTCGTGTACACTTGCATGT+TGG - chr3_4:67494438-67494457 Msa0516070:intron 50.0%
TTAAACGTGCACCTGAAGGG+AGG - chr3_4:67494609-67494628 Msa0516070:intron 50.0%
TTACTCACCCACAGGATCTG+AGG + chr3_4:67494657-67494676 None:intergenic 50.0%
TTCTCTACAAGTTCCTGGGC+AGG + chr3_4:67495785-67495804 None:intergenic 50.0%
! TCTAAGGCATTAAGACCCGG+TGG - chr3_4:67495824-67495843 Msa0516070:intron 50.0%
!! AAGGTGCTGATAAGCATCGG+AGG - chr3_4:67496703-67496722 Msa0516070:intron 50.0%
! GTAATTTGGGATGCAGGGTG+TGG - chr3_4:67497164-67497183 Msa0516070:intron 50.0%
!! GGCCGAGTTGGATGAGATTT+TGG - chr3_4:67497281-67497300 Msa0516070:CDS 50.0%
!! GGGACTCCAATGATTTGGTG+CGG - chr3_4:67497652-67497671 Msa0516070:intron 50.0%
!! TAATCACAACCGGCTAGCCT+CGG + chr3_4:67498299-67498318 None:intergenic 50.0%
TGAAGGGAGAGAGACCTGTC+TGG + chr3_4:67491957-67491976 None:intergenic 55.0%
GGACGCCGTAGAAAGAGGTT+TGG - chr3_4:67492795-67492814 Msa0516070:three_prime_UTR 55.0%
TGGATGGGAAGGCGAGTAAC+AGG - chr3_4:67492833-67492852 Msa0516070:three_prime_UTR 55.0%
GGGAAGGCGAGTAACAGGAA+TGG - chr3_4:67492838-67492857 Msa0516070:three_prime_UTR 55.0%
! ACTCTACCGTTGTTTCGGGG+TGG - chr3_4:67492932-67492951 Msa0516070:three_prime_UTR 55.0%
CAACCGAGCCTTCATGGAGA+AGG - chr3_4:67493301-67493320 Msa0516070:intron 55.0%
ATGAATATGGGGGTGGGGGA+AGG - chr3_4:67493324-67493343 Msa0516070:intron 55.0%
!! GTTGTTGGTGGTGGAGATGG+TGG - chr3_4:67494222-67494241 Msa0516070:CDS 55.0%
!! TGTTGGTGGTGGAGATGGTG+GGG - chr3_4:67494224-67494243 Msa0516070:CDS 55.0%
!! GTGGAGATGGTGGGGTTCTA+AGG - chr3_4:67494232-67494251 Msa0516070:CDS 55.0%
TATGCTCCACAGAGCTGTGG+CGG + chr3_4:67494266-67494285 None:intergenic 55.0%
! ATGTGGGATAGTGGCCGAGT+TGG - chr3_4:67497269-67497288 Msa0516070:CDS 55.0%
!! GGGCTTTGAGCTAGTGACCA+TGG - chr3_4:67497349-67497368 Msa0516070:exon 55.0%
TTCAACAACCCGAGGCTAGC+CGG - chr3_4:67498287-67498306 Msa0516070:five_prime_UTR 55.0%
!! AATCACAACCGGCTAGCCTC+GGG + chr3_4:67498298-67498317 None:intergenic 55.0%
ATGGGGGACGCCGTAGAAAG+AGG - chr3_4:67492790-67492809 Msa0516070:three_prime_UTR 60.0%
CAACTCAGGGGCTGAAGCCA+TGG + chr3_4:67492899-67492918 None:intergenic 60.0%
CATGGCTTCAGCCCCTGAGT+TGG - chr3_4:67492897-67492916 Msa0516070:three_prime_UTR 60.0%
GGGACGGAATGGAACAGAGG+GGG + chr3_4:67493798-67493817 None:intergenic 60.0%
GGGGACGGAATGGAACAGAG+GGG + chr3_4:67493799-67493818 None:intergenic 60.0%
GGGGGACGGAATGGAACAGA+GGG + chr3_4:67493800-67493819 None:intergenic 60.0%
TGGGGGACGGAATGGAACAG+AGG + chr3_4:67493801-67493820 None:intergenic 60.0%
AGTATCCCGCCACAGCTCTG+TGG - chr3_4:67494257-67494276 Msa0516070:CDS 60.0%
ATGCTCCACAGAGCTGTGGC+GGG + chr3_4:67494265-67494284 None:intergenic 60.0%
ACGGCGTCATACCTCCCTTC+AGG + chr3_4:67494623-67494642 None:intergenic 60.0%
! GGCTTCAGCCCCTGAGTTGG+AGG - chr3_4:67492900-67492919 Msa0516070:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 67491717 67498439 67491717 ID=Msa0516070;Name=Msa0516070
chr3_4 mRNA 67491717 67498439 67491717 ID=Msa0516070-mRNA-1;Parent=Msa0516070;Name=Msa0516070-mRNA-1;_AED=0.09;_eAED=0.09;_QI=276|1|1|1|0.8|0.72|11|1482|358
chr3_4 exon 67491717 67493264 67491717 ID=Msa0516070-mRNA-1:exon:17628;Parent=Msa0516070-mRNA-1
chr3_4 exon 67493407 67493536 67493407 ID=Msa0516070-mRNA-1:exon:17627;Parent=Msa0516070-mRNA-1
chr3_4 exon 67494181 67494376 67494181 ID=Msa0516070-mRNA-1:exon:17626;Parent=Msa0516070-mRNA-1
chr3_4 exon 67495488 67495559 67495488 ID=Msa0516070-mRNA-1:exon:17625;Parent=Msa0516070-mRNA-1
chr3_4 exon 67495691 67495763 67495691 ID=Msa0516070-mRNA-1:exon:17624;Parent=Msa0516070-mRNA-1
chr3_4 exon 67495836 67495940 67495836 ID=Msa0516070-mRNA-1:exon:17623;Parent=Msa0516070-mRNA-1
chr3_4 exon 67496331 67496453 67496331 ID=Msa0516070-mRNA-1:exon:17622;Parent=Msa0516070-mRNA-1
chr3_4 exon 67496536 67496612 67496536 ID=Msa0516070-mRNA-1:exon:17621;Parent=Msa0516070-mRNA-1
chr3_4 exon 67497025 67497069 67497025 ID=Msa0516070-mRNA-1:exon:17620;Parent=Msa0516070-mRNA-1
chr3_4 exon 67497177 67497397 67497177 ID=Msa0516070-mRNA-1:exon:17619;Parent=Msa0516070-mRNA-1
chr3_4 exon 67498195 67498439 67498195 ID=Msa0516070-mRNA-1:exon:17618;Parent=Msa0516070-mRNA-1
chr3_4 five_prime_UTR 67498195 67498439 67498195 ID=Msa0516070-mRNA-1:five_prime_utr;Parent=Msa0516070-mRNA-1
chr3_4 five_prime_UTR 67497367 67497397 67497367 ID=Msa0516070-mRNA-1:five_prime_utr;Parent=Msa0516070-mRNA-1
chr3_4 CDS 67497177 67497366 67497177 ID=Msa0516070-mRNA-1:cds;Parent=Msa0516070-mRNA-1
chr3_4 CDS 67497025 67497069 67497025 ID=Msa0516070-mRNA-1:cds;Parent=Msa0516070-mRNA-1
chr3_4 CDS 67496536 67496612 67496536 ID=Msa0516070-mRNA-1:cds;Parent=Msa0516070-mRNA-1
chr3_4 CDS 67496331 67496453 67496331 ID=Msa0516070-mRNA-1:cds;Parent=Msa0516070-mRNA-1
chr3_4 CDS 67495836 67495940 67495836 ID=Msa0516070-mRNA-1:cds;Parent=Msa0516070-mRNA-1
chr3_4 CDS 67495691 67495763 67495691 ID=Msa0516070-mRNA-1:cds;Parent=Msa0516070-mRNA-1
chr3_4 CDS 67495488 67495559 67495488 ID=Msa0516070-mRNA-1:cds;Parent=Msa0516070-mRNA-1
chr3_4 CDS 67494181 67494376 67494181 ID=Msa0516070-mRNA-1:cds;Parent=Msa0516070-mRNA-1
chr3_4 CDS 67493407 67493536 67493407 ID=Msa0516070-mRNA-1:cds;Parent=Msa0516070-mRNA-1
chr3_4 CDS 67493199 67493264 67493199 ID=Msa0516070-mRNA-1:cds;Parent=Msa0516070-mRNA-1
chr3_4 three_prime_UTR 67491717 67493198 67491717 ID=Msa0516070-mRNA-1:three_prime_utr;Parent=Msa0516070-mRNA-1
Gene Sequence

>Msa0516070

ATGGGGGACGCCGTAGAAAGAGGTTTGGAATGCCAGAAGACTATGGATGGGAAGGCGAGTAACAGGAATGGTTTGGAGAAGGAGATTCCTTCATGTTGTTTGAAAGCCATGGCTTCAGCCCCTGAGTTGGAGGCCAATTGTCACTCTACCGTTGTTTCGGGGTGGTTCTCAGCATCTCAAACTTGCTCTGAAAAATCAGAGGAAGTTCTTTATTTCAACAACCCAATGTGGCCAGGAGAAGCCCATTCAATCAAAGTAGAGAAGAAATTGTTCCAAGAAAAGTCACTGTACCAAGAGGTCTTGGTTTTTGAGTCATTAACATATGGGAAAGTTCTTGTACTTGATGGGATTGTTCAGTTGACTGAAAAGGATGAATGTGCTTACCAGGAGATGATAGCTCATCTCCCCCTCTGTTCCATTCCGTCCCCCAAAAATGTTTTAGTTGTTGGTGGTGGAGATGGTGGGGTTCTAAGGGAAGTATCCCGCCACAGCTCTGTGGAGCATATTGATATTTGTGAGATAGATAAGATGGTTATTGATGTTTCTAGGAAGTTTTTTCCAGAGTTAGCTGTTGGGTTTGACGATCCTCGTGTACACTTGCATGTTGGTGATGCTATTGAATTTCTTAAACGTGCACCTGAAGGGAGGTATGACGCCGTAATTGTTGATTCCTCAGATCCTGTGGGTCCTGCCCAGGAACTTGTAGAGAAACCATTTTTTGAGACTATATCTAAGGCATTAAGACCCGGTGGAGTTCTTTGTAATATGGCAGAAAGTATGTGGCTTCATACACACCTTATTCAAGACATGCTCTCCATTTGTCGAGAAACATTTAAAGGTTCTGTACATTATGCATGGGCAAGTGTTCCAACATATCCAAGTGGTGTGATAGGGTTTCTTCTATGCTCAACAGAGGGGCCGCATGTTGATTTTGTGAACCCCATCAATCCCATTGAAAAGTTAGAAGGTGCTGATAAGCATCGGAGGAATCTTAGGTTCTATAACTCAGAGATACATACAGCGGCTTTTGCACTGCCTGCATTTCTGAAGAATGAGGTGAGGTTGCTCCGTCAGTAG
Protein sequence

>Msa0516070

MGDAVERGLECQKTMDGKASNRNGLEKEIPSCCLKAMASAPELEANCHSTVVSGWFSASQTCSEKSEEVLYFNNPMWPGEAHSIKVEKKLFQEKSLYQEVLVFESLTYGKVLVLDGIVQLTEKDECAYQEMIAHLPLCSIPSPKNVLVVGGGDGGVLREVSRHSSVEHIDICEIDKMVIDVSRKFFPELAVGFDDPRVHLHVGDAIEFLKRAPEGRYDAVIVDSSDPVGPAQELVEKPFFETISKALRPGGVLCNMAESMWLHTHLIQDMLSICRETFKGSVHYAWASVPTYPSGVIGFLLCSTEGPHVDFVNPINPIEKLEGADKHRRNLRFYNSEIHTAAFALPAFLKNEVRLLRQ*