Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376080 | XP_003602216.2 | 96.644 | 298 | 10 | 0 | 1 | 298 | 1 | 298 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376080 | sp|P43935|Y077_HAEIN | 31.507 | 292 | 147 | 12 | 9 | 283 | 12 | 267 | 1.62e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376080 | G7J6T5 | 96.644 | 298 | 10 | 0 | 1 | 298 | 1 | 298 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0376080 | Msa0376240 | 0.971362 | 4.803162e-133 | -8.615850e-47 |
| Msa0376080 | Msa0516080 | 0.947433 | 6.794581e-106 | -8.615850e-47 |
| Msa0295000 | Msa0376080 | 0.806219 | 9.149478e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376080 | MtrunA17_Chr3g0126561 | 96.644 | 298 | 10 | 0 | 1 | 298 | 1 | 298 | 0.0 | 588 |
| Msa0376080 | MtrunA17_Chr2g0325421 | 35.563 | 284 | 155 | 7 | 7 | 289 | 73 | 329 | 1.18e-45 | 158 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376080 | AT5G04520.1 | 76.451 | 293 | 64 | 2 | 6 | 298 | 4 | 291 | 2.21e-168 | 468 |
| Msa0376080 | AT1G06240.1 | 34.364 | 291 | 152 | 7 | 7 | 290 | 81 | 339 | 1.63e-43 | 153 |
Find 95 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCGGCTCATGACGGTCTT+TGG | 0.241495 | 3_1:-76111316 | Msa0376080:CDS |
| TTTCTAGCAGCCTCATTAAA+AGG | 0.268264 | 3_1:+76109484 | None:intergenic |
| GAGGAGCTAGGTTCTTATTA+TGG | 0.271719 | 3_1:-76111344 | Msa0376080:CDS |
| GCACAATGTGTAATTTCTTC+TGG | 0.281336 | 3_1:+76109670 | None:intergenic |
| GAACATTGTTCTTAGAATTT+CGG | 0.286903 | 3_1:-76109254 | Msa0376080:three_prime_UTR |
| GAGAGCCTTGCGGGGCGATC+GGG | 0.312254 | 3_1:+76113807 | None:intergenic |
| GAGACGCTGGAGAGCCTTGC+GGG | 0.312985 | 3_1:+76113798 | None:intergenic |
| GCTAGAAAAGCTGCTGGATT+TGG | 0.337986 | 3_1:-76109469 | Msa0376080:CDS |
| TTCTTATTATGGAGCATTAC+CGG | 0.338235 | 3_1:-76111333 | Msa0376080:CDS |
| ACCGGCTCATGACGGTCTTT+GGG | 0.341500 | 3_1:-76111315 | Msa0376080:CDS |
| GAAATTTGTGCAGTGGAGAT+TGG | 0.366418 | 3_1:-76109586 | Msa0376080:CDS |
| CAGGATATAATAGCTCGTTT+TGG | 0.377718 | 3_1:-76111461 | Msa0376080:CDS |
| CGATTAAAACATCAAATATT+CGG | 0.381140 | 3_1:+76109295 | None:intergenic |
| CGGAAACGTGAGATTGTTGT+AGG | 0.390181 | 3_1:+76109742 | None:intergenic |
| CAAAGTTTCATGCAGTAGTA+AGG | 0.400207 | 3_1:-76109534 | Msa0376080:CDS |
| CCGAGTCGCGCCTTCTCGAA+TGG | 0.413558 | 3_1:+76113903 | None:intergenic |
| GCTTCCTGCTTTACCCAACT+TGG | 0.414688 | 3_1:+76113665 | None:intergenic |
| AGCAAGAGGTTCATACCATT+CGG | 0.420002 | 3_1:+76109444 | None:intergenic |
| AATGCCTAGAGAATTCTTTA+CGG | 0.420102 | 3_1:-76111426 | Msa0376080:CDS |
| GGAGAGCCTTGCGGGGCGAT+CGG | 0.426997 | 3_1:+76113806 | None:intergenic |
| TAAAACTGTTATTATGCATT+GGG | 0.429128 | 3_1:+76109412 | None:intergenic |
| CAAATTTCTTGATCTGAGGT+TGG | 0.437247 | 3_1:+76109601 | None:intergenic |
| CTGCTGGAGTCAAATGGTTC+AGG | 0.438600 | 3_1:-76109648 | Msa0376080:CDS |
| AGGTTGGATTTCTAGACCTC+TGG | 0.439745 | 3_1:+76109617 | None:intergenic |
| TCTTGCTCATATTGAGAGTT+GGG | 0.441722 | 3_1:-76113613 | Msa0376080:CDS |
| AAGCAGGAAGCTTGCAAAGC+AGG | 0.447695 | 3_1:-76113653 | Msa0376080:CDS |
| CGAGTCGCGCCTTCTCGAAT+GGG | 0.449213 | 3_1:+76113904 | None:intergenic |
| CTAAAACTGTTATTATGCAT+TGG | 0.466542 | 3_1:+76109411 | None:intergenic |
| GAAATTACACATTGTGCTGC+TGG | 0.472613 | 3_1:-76109664 | Msa0376080:CDS |
| GTGAAGGTGGCACAGGATGA+AGG | 0.473724 | 3_1:-76111398 | Msa0376080:CDS |
| GTCTTGCTCATATTGAGAGT+TGG | 0.478918 | 3_1:-76113614 | Msa0376080:CDS |
| GTTGGGCCATTGATCTTTCG+TGG | 0.480220 | 3_1:-76113596 | Msa0376080:CDS |
| GCAAGAGGTTCATACCATTC+GGG | 0.486451 | 3_1:+76109445 | None:intergenic |
| TCGGCGACTCAGTCGCTTCA+CGG | 0.490702 | 3_1:-76113884 | Msa0376080:CDS |
| TGATAGTAAATCCTCGGAAG+TGG | 0.492180 | 3_1:+76111280 | None:intergenic |
| CCCAACTTGGGCATGAGACT+CGG | 0.496986 | 3_1:+76113678 | None:intergenic |
| CCGAGTCTCATGCCCAAGTT+GGG | 0.498610 | 3_1:-76113678 | Msa0376080:CDS |
| TGATGTCTTGCAGGTGAAGT+TGG | 0.504862 | 3_1:-76113706 | Msa0376080:intron |
| TCTTCTTGCTGCACGACTTG+AGG | 0.515476 | 3_1:-76111363 | Msa0376080:CDS |
| TCCGAGTCTCATGCCCAAGT+TGG | 0.516672 | 3_1:-76113679 | Msa0376080:CDS |
| GGATTTCGTGAAGGTGGCAC+AGG | 0.519784 | 3_1:-76111405 | Msa0376080:CDS |
| GAGGCTGCTAGAAAAGCTGC+TGG | 0.521511 | 3_1:-76109475 | Msa0376080:CDS |
| CTTCCTGCTTTACCCAACTT+GGG | 0.523510 | 3_1:+76113666 | None:intergenic |
| AGAGCCTTGCGGGGCGATCG+GGG | 0.523900 | 3_1:+76113808 | None:intergenic |
| TGCACAAATTTCTTGATCTG+AGG | 0.526203 | 3_1:+76109597 | None:intergenic |
| CGGGGCGATCGGGGATGTGA+AGG | 0.526577 | 3_1:+76113817 | None:intergenic |
| TAAATCCTCGGAAGTGGAGG+TGG | 0.527096 | 3_1:+76111286 | None:intergenic |
| ATGCCCAAGTTGGGTAAAGC+AGG | 0.527357 | 3_1:-76113669 | Msa0376080:CDS |
| GTCGCTTCACGGTGGCTCGA+TGG | 0.530687 | 3_1:-76113873 | Msa0376080:CDS |
| AGGCAGCACATCAAGTCCTC+TGG | 0.536437 | 3_1:+76109762 | None:intergenic |
| TCCCAAAGACCGTCATGAGC+CGG | 0.536974 | 3_1:+76111314 | None:intergenic |
| AGCAGGAAGCTTGCAAAGCA+GGG | 0.541244 | 3_1:-76113652 | Msa0376080:CDS |
| AGGTCGATAGAACGGTTGTA+TGG | 0.544703 | 3_1:+76113837 | None:intergenic |
| GCTGCACGACTTGAGGAGCT+AGG | 0.550537 | 3_1:-76111356 | Msa0376080:CDS |
| TTCTGCCACCTCCACTTCCG+AGG | 0.552266 | 3_1:-76111291 | Msa0376080:CDS |
| CCATTCGAGAAGGCGCGACT+CGG | 0.556818 | 3_1:-76113903 | Msa0376080:CDS |
| GAGTACCCACGAAAGATCAA+TGG | 0.559683 | 3_1:+76113590 | None:intergenic |
| TTGGGCCATTGATCTTTCGT+GGG | 0.566062 | 3_1:-76113595 | Msa0376080:intron |
| TTGGGCACTTTAACAGCAAG+AGG | 0.569293 | 3_1:+76109430 | None:intergenic |
| AAATCCGTAAAGAATTCTCT+AGG | 0.570912 | 3_1:+76111422 | None:intergenic |
| CGCCTTCTCGAATGGGTCGG+CGG | 0.572024 | 3_1:+76113911 | None:intergenic |
| TGTCTTGCAGGTGAAGTTGG+TGG | 0.573444 | 3_1:-76113703 | Msa0376080:intron |
| ACATCCCCGATCGCCCCGCA+AGG | 0.574608 | 3_1:-76113812 | Msa0376080:CDS |
| TGAAGGTGGCACAGGATGAA+GGG | 0.574869 | 3_1:-76111397 | Msa0376080:CDS |
| CTTTACGGATTTCGTGAAGG+TGG | 0.580964 | 3_1:-76111411 | Msa0376080:CDS |
| TCGCGCCTTCTCGAATGGGT+CGG | 0.583187 | 3_1:+76113908 | None:intergenic |
| GGGAGCTCACGAAGAAACCT+TGG | 0.584147 | 3_1:-76113961 | Msa0376080:CDS |
| GAGATTGGAACAACAACAGA+GGG | 0.585485 | 3_1:-76109571 | Msa0376080:CDS |
| CTGCTGGATTTGGTCCCGAA+TGG | 0.586642 | 3_1:-76109459 | Msa0376080:CDS |
| TAATCGTGATAGTAAATCCT+CGG | 0.588847 | 3_1:+76111274 | None:intergenic |
| CTAGCAGCCTCATTAAAAGG+TGG | 0.590935 | 3_1:+76109487 | None:intergenic |
| GGTCGGCGGTGTTCAAAACT+CGG | 0.593733 | 3_1:+76113925 | None:intergenic |
| ACAATCTCACGTTTCCGCAA+TGG | 0.595156 | 3_1:-76109736 | Msa0376080:CDS |
| CACCGCCGACCCATTCGAGA+AGG | 0.607577 | 3_1:-76113913 | Msa0376080:CDS |
| AGATCAAGAAATTTGTGCAG+TGG | 0.613201 | 3_1:-76109593 | Msa0376080:CDS |
| AGAGACGCTGGAGAGCCTTG+CGG | 0.613279 | 3_1:+76113797 | None:intergenic |
| GGATGTGAAGGTCGATAGAA+CGG | 0.615989 | 3_1:+76113829 | None:intergenic |
| ATTCTTTACGGATTTCGTGA+AGG | 0.620123 | 3_1:-76111414 | Msa0376080:CDS |
| TAGTAAATCCTCGGAAGTGG+AGG | 0.621594 | 3_1:+76111283 | None:intergenic |
| ATCTCACGTTTCCGCAATGG+TGG | 0.621599 | 3_1:-76109733 | Msa0376080:CDS |
| AGCTCACGAAGAAACCTTGG+TGG | 0.624811 | 3_1:-76113958 | Msa0376080:CDS |
| AGACGCTGGAGAGCCTTGCG+GGG | 0.645434 | 3_1:+76113799 | None:intergenic |
| ATTGTGCTGCTGGAGTCAAA+TGG | 0.648838 | 3_1:-76109654 | Msa0376080:CDS |
| TCGGAGCGCTGCTTCCACCA+AGG | 0.652247 | 3_1:+76113944 | None:intergenic |
| ACGGTTGTATGGTTCAGCGA+TGG | 0.654997 | 3_1:+76113848 | None:intergenic |
| GTAGTAAGGACATGTTTCAG+AGG | 0.667960 | 3_1:-76109520 | Msa0376080:CDS |
| TAGTGTCATCACCACCATTG+CGG | 0.670205 | 3_1:+76109722 | None:intergenic |
| GGAGCATTACCGGCTCATGA+CGG | 0.674476 | 3_1:-76111323 | Msa0376080:CDS |
| GGTTCAGGTATCTATGCCAG+AGG | 0.683892 | 3_1:-76109633 | Msa0376080:CDS |
| AGTTGAACATTGTGTCCATG+AGG | 0.684180 | 3_1:-76111249 | Msa0376080:intron |
| GATTGGAACAACAACAGAGG+GGG | 0.690681 | 3_1:-76109569 | Msa0376080:CDS |
| TGAGTGTCAAAACAGGCCAG+AGG | 0.714367 | 3_1:-76109778 | Msa0376080:intron |
| GGAGATTGGAACAACAACAG+AGG | 0.721744 | 3_1:-76109572 | Msa0376080:CDS |
| GCGACTCAGTCGCTTCACGG+TGG | 0.729190 | 3_1:-76113881 | Msa0376080:CDS |
| AGATTGGAACAACAACAGAG+GGG | 0.798618 | 3_1:-76109570 | Msa0376080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAACCAATAAATTTTA+TGG | - | chr3_1:76109941-76109960 | Msa0376080:intron | 10.0% |
| !!! | ATTTAAAATAAGTTTTGTTA+AGG | - | chr3_1:76110067-76110086 | Msa0376080:intron | 10.0% |
| !!! | TTTAAAATAAGTTTTGTTAA+GGG | - | chr3_1:76110068-76110087 | Msa0376080:intron | 10.0% |
| !!! | ATTATTTTTCTGTTAAAAAA+TGG | + | chr3_1:76110489-76110508 | None:intergenic | 10.0% |
| !! | TAAATTTAAAGATATTGATA+TGG | + | chr3_1:76111191-76111210 | None:intergenic | 10.0% |
| !! | CTTCAAAAAAAAAAAAAAAA+CGG | + | chr3_1:76113893-76113912 | None:intergenic | 10.0% |
| !! | AACATATTTATAAAAAGAAA+CGG | + | chr3_1:76113924-76113943 | None:intergenic | 10.0% |
| !!! | ATTTATTGGTTTTTAATAGT+GGG | + | chr3_1:76109937-76109956 | None:intergenic | 15.0% |
| !!! | AATTTATTGGTTTTTAATAG+TGG | + | chr3_1:76109938-76109957 | None:intergenic | 15.0% |
| !! | AAGAATTCCATAAAATTTAT+TGG | + | chr3_1:76109951-76109970 | None:intergenic | 15.0% |
| !! | AAATAAAAAATCCTTCAATA+TGG | + | chr3_1:76109994-76110013 | None:intergenic | 15.0% |
| !! | AAGTTAAGAACTATTATAAT+TGG | + | chr3_1:76110315-76110334 | None:intergenic | 15.0% |
| !!! | TAGAAAGCTTTTTTTAAATT+GGG | + | chr3_1:76110701-76110720 | None:intergenic | 15.0% |
| !!! | ATAGAAAGCTTTTTTTAAAT+TGG | + | chr3_1:76110702-76110721 | None:intergenic | 15.0% |
| !!! | ACAATAATGTATTTTTTACA+TGG | - | chr3_1:76110992-76111011 | Msa0376080:intron | 15.0% |
| !! | TTGTTAAACTAAAATTTAGT+TGG | - | chr3_1:76111638-76111657 | Msa0376080:intron | 15.0% |
| !!! | TATGATTTATGGTATTTTTT+TGG | - | chr3_1:76112169-76112188 | Msa0376080:intron | 15.0% |
| !!! | ATGATTTATGGTATTTTTTT+GGG | - | chr3_1:76112170-76112189 | Msa0376080:intron | 15.0% |
| !!! | AATATCAGAAATTTTGAATT+AGG | - | chr3_1:76112493-76112512 | Msa0376080:intron | 15.0% |
| !! | AGTATAACTATTGAATTAAA+AGG | - | chr3_1:76112821-76112840 | Msa0376080:intron | 15.0% |
| !! | GTATAACTATTGAATTAAAA+GGG | - | chr3_1:76112822-76112841 | Msa0376080:intron | 15.0% |
| !!! | AAATCGATTTATTGTTTATT+AGG | - | chr3_1:76113215-76113234 | Msa0376080:intron | 15.0% |
| !!! | CGTTTTTTTTTTTTTTTTGA+AGG | - | chr3_1:76113891-76113910 | Msa0376080:CDS | 15.0% |
| !! | TGAAAAAACAGAAAAATATC+TGG | - | chr3_1:76109849-76109868 | Msa0376080:intron | 20.0% |
| !! | GAAAAAACAGAAAAATATCT+GGG | - | chr3_1:76109850-76109869 | Msa0376080:intron | 20.0% |
| !! | ATTAGAGTAATAAGAAAGAT+TGG | - | chr3_1:76110283-76110302 | Msa0376080:intron | 20.0% |
| !! | TTAGAGTAATAAGAAAGATT+GGG | - | chr3_1:76110284-76110303 | Msa0376080:intron | 20.0% |
| !!! | ATTTTTCTGTTAAAAAATGG+AGG | + | chr3_1:76110486-76110505 | None:intergenic | 20.0% |
| !! | AGATCAAAGAATTAATAAAG+GGG | + | chr3_1:76110770-76110789 | None:intergenic | 20.0% |
| !! | CAGATCAAAGAATTAATAAA+GGG | + | chr3_1:76110771-76110790 | None:intergenic | 20.0% |
| !!! | TTTATCAGCAAATTTTGTTT+TGG | - | chr3_1:76112427-76112446 | Msa0376080:intron | 20.0% |
| !!! | TTATCAGCAAATTTTGTTTT+GGG | - | chr3_1:76112428-76112447 | Msa0376080:intron | 20.0% |
| !! | GAAAAAAAATACATAACCAA+AGG | + | chr3_1:76112620-76112639 | None:intergenic | 20.0% |
| !!! | ATTAACCTTTTGCAAATATA+AGG | + | chr3_1:76112928-76112947 | None:intergenic | 20.0% |
| !! | TAAAATGGAGTAAACATTAA+CGG | - | chr3_1:76113246-76113265 | Msa0376080:intron | 20.0% |
| !! | TTAAATGGAAATATATTAGC+CGG | + | chr3_1:76113283-76113302 | None:intergenic | 20.0% |
| !! | GGCAATAATACTAAATTAAA+TGG | + | chr3_1:76113298-76113317 | None:intergenic | 20.0% |
| !! | AATTTAGTATTATTGCCATT+AGG | - | chr3_1:76113301-76113320 | Msa0376080:intron | 20.0% |
| !! | AGACTAAAATTATCTTAGAA+TGG | - | chr3_1:76113360-76113379 | Msa0376080:intron | 20.0% |
| !! | GACTAAAATTATCTTAGAAT+GGG | - | chr3_1:76113361-76113380 | Msa0376080:intron | 20.0% |
| !! | TAAAACTGTTATTATGCATT+GGG | + | chr3_1:76113831-76113850 | None:intergenic | 20.0% |
| !! | CGATTAAAACATCAAATATT+CGG | + | chr3_1:76113948-76113967 | None:intergenic | 20.0% |
| !!! | ATTTTTCAACATATCGAGAT+GGG | - | chr3_1:76109259-76109278 | Msa0376080:three_prime_UTR | 25.0% |
| ! | TTAGAATATAAATGTGGGAA+CGG | + | chr3_1:76109882-76109901 | None:intergenic | 25.0% |
| ! | TAGAGTAATAAGAAAGATTG+GGG | - | chr3_1:76110285-76110304 | Msa0376080:intron | 25.0% |
| !! | TGTTTTATCCTATGAACTAA+CGG | - | chr3_1:76110362-76110381 | Msa0376080:intron | 25.0% |
| !! | CATTTGAGATACAATTTGAA+AGG | - | chr3_1:76110517-76110536 | Msa0376080:intron | 25.0% |
| ! | ATCAACCATTAATTAATTGC+AGG | - | chr3_1:76110591-76110610 | Msa0376080:intron | 25.0% |
| ! | ATGTACCTGCAATTAATTAA+TGG | + | chr3_1:76110599-76110618 | None:intergenic | 25.0% |
| ! | CCAGATCAAAGAATTAATAA+AGG | + | chr3_1:76110772-76110791 | None:intergenic | 25.0% |
| ! | CCTTTATTAATTCTTTGATC+TGG | - | chr3_1:76110769-76110788 | Msa0376080:intron | 25.0% |
| ! | ACAAAAAATAGAGAGACATA+TGG | - | chr3_1:76110796-76110815 | Msa0376080:intron | 25.0% |
| !!! | TACATGTTCTATTTTGATCA+TGG | - | chr3_1:76110839-76110858 | Msa0376080:intron | 25.0% |
| ! | AATACATCTGACATATTTAG+AGG | - | chr3_1:76110968-76110987 | Msa0376080:intron | 25.0% |
| ! | ATACATCTGACATATTTAGA+GGG | - | chr3_1:76110969-76110988 | Msa0376080:intron | 25.0% |
| !!! | ATTATTTTGTACGAAGAAGA+AGG | + | chr3_1:76111316-76111335 | None:intergenic | 25.0% |
| ! | TAAACATAAATCTTCTTTGG+CGG | - | chr3_1:76111468-76111487 | Msa0376080:intron | 25.0% |
| !! | TGCAATTTACTCGAATTTTA+GGG | + | chr3_1:76111604-76111623 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTCATACAGTTGA+TGG | - | chr3_1:76111704-76111723 | Msa0376080:intron | 25.0% |
| !!! | AGTTTTTTCATACAGTTGAT+GGG | - | chr3_1:76111705-76111724 | Msa0376080:intron | 25.0% |
| !! | AATACTTTTACCAATAAAGC+AGG | + | chr3_1:76111738-76111757 | None:intergenic | 25.0% |
| ! | AAACCATAAACAACCAAAAA+TGG | + | chr3_1:76112047-76112066 | None:intergenic | 25.0% |
| !!! | ATTTATGGTATTTTTTTGGG+AGG | - | chr3_1:76112173-76112192 | Msa0376080:intron | 25.0% |
| !!! | TATCAGCAAATTTTGTTTTG+GGG | - | chr3_1:76112429-76112448 | Msa0376080:intron | 25.0% |
| ! | AAACATTAAAGAACTCCATA+TGG | + | chr3_1:76112460-76112479 | None:intergenic | 25.0% |
| !! | TGATTTTTATCTAACAGTGT+AGG | + | chr3_1:76112644-76112663 | None:intergenic | 25.0% |
| ! | GAAACAATCAAGTGAAAATA+AGG | - | chr3_1:76112677-76112696 | Msa0376080:intron | 25.0% |
| !!! | TTTAGCCTTATATTTGCAAA+AGG | - | chr3_1:76112920-76112939 | Msa0376080:intron | 25.0% |
| ! | AATGATGTAATCATGCAATA+AGG | + | chr3_1:76113082-76113101 | None:intergenic | 25.0% |
| ! | TATTAGGTCAACAACTAAAA+TGG | - | chr3_1:76113231-76113250 | Msa0376080:intron | 25.0% |
| ! | AAATATATTAGCCGGAAAAA+GGG | + | chr3_1:76113275-76113294 | None:intergenic | 25.0% |
| !!! | TCATTAAAAGGTGGTTTTAA+GGG | + | chr3_1:76113747-76113766 | None:intergenic | 25.0% |
| ! | CTAAAACTGTTATTATGCAT+TGG | + | chr3_1:76113832-76113851 | None:intergenic | 25.0% |
| !! | CAATGCATAATAACAGTTTT+AGG | - | chr3_1:76113830-76113849 | Msa0376080:CDS | 25.0% |
| ! | GAACATTGTTCTTAGAATTT+CGG | - | chr3_1:76113986-76114005 | Msa0376080:five_prime_UTR | 25.0% |
| !! | CATTTTTCAACATATCGAGA+TGG | - | chr3_1:76109258-76109277 | Msa0376080:three_prime_UTR | 30.0% |
| !! | GAACACAAGAAGAGTATTAT+TGG | + | chr3_1:76109480-76109499 | None:intergenic | 30.0% |
| AAATTCCTCACTGACATAAA+TGG | - | chr3_1:76109504-76109523 | Msa0376080:CDS | 30.0% | |
| GGCTGTTAGAATATAAATGT+GGG | + | chr3_1:76109887-76109906 | None:intergenic | 30.0% | |
| AGGCTGTTAGAATATAAATG+TGG | + | chr3_1:76109888-76109907 | None:intergenic | 30.0% | |
| AAATGTGCAGTTTACATACA+TGG | + | chr3_1:76110032-76110051 | None:intergenic | 30.0% | |
| TTTAACCTCTAACAATCATG+TGG | - | chr3_1:76110182-76110201 | Msa0376080:intron | 30.0% | |
| TTAACCTCTAACAATCATGT+GGG | - | chr3_1:76110183-76110202 | Msa0376080:intron | 30.0% | |
| !! | AACTTTTTCTTGCCATTCAA+CGG | - | chr3_1:76110330-76110349 | Msa0376080:intron | 30.0% |
| ! | TAAGAGCACATTATGCATAT+TGG | + | chr3_1:76110440-76110459 | None:intergenic | 30.0% |
| AGATACAATTTGAAAGGATC+CGG | - | chr3_1:76110523-76110542 | Msa0376080:intron | 30.0% | |
| GTGTAAAGTGAGAAAATCAA+GGG | + | chr3_1:76110654-76110673 | None:intergenic | 30.0% | |
| AGTGTAAAGTGAGAAAATCA+AGG | + | chr3_1:76110655-76110674 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTTTAAATTGGGCA+AGG | + | chr3_1:76110696-76110715 | None:intergenic | 30.0% |
| !!! | ATGTTCTATTTTGATCATGG+TGG | - | chr3_1:76110842-76110861 | Msa0376080:intron | 30.0% |
| TAAAGTGATAAAACCCATGA+AGG | + | chr3_1:76111279-76111298 | None:intergenic | 30.0% | |
| GAGATAAGCTAAAAGCAAAT+GGG | + | chr3_1:76111366-76111385 | None:intergenic | 30.0% | |
| AGAGATAAGCTAAAAGCAAA+TGG | + | chr3_1:76111367-76111386 | None:intergenic | 30.0% | |
| GGCTAAACATAAATCTTCTT+TGG | - | chr3_1:76111465-76111484 | Msa0376080:intron | 30.0% | |
| CTTGATTTAGACTAGAAGAT+AGG | + | chr3_1:76111544-76111563 | None:intergenic | 30.0% | |
| ! | CAATTTACTCGAATTTTAGG+GGG | + | chr3_1:76111602-76111621 | None:intergenic | 30.0% |
| ! | GCAATTTACTCGAATTTTAG+GGG | + | chr3_1:76111603-76111622 | None:intergenic | 30.0% |
| ! | GTGCAATTTACTCGAATTTT+AGG | + | chr3_1:76111605-76111624 | None:intergenic | 30.0% |
| !! | TGCATTTGTTATCGTTTGTT+TGG | - | chr3_1:76111673-76111692 | Msa0376080:intron | 30.0% |
| GATGTATAATGAATTCTTGC+AGG | - | chr3_1:76111760-76111779 | Msa0376080:intron | 30.0% | |
| AATGCCTAGAGAATTCTTTA+CGG | - | chr3_1:76111814-76111833 | Msa0376080:intron | 30.0% | |
| AAATCCGTAAAGAATTCTCT+AGG | + | chr3_1:76111821-76111840 | None:intergenic | 30.0% | |
| ! | TTCTTATTATGGAGCATTAC+CGG | - | chr3_1:76111907-76111926 | Msa0376080:intron | 30.0% |
| TAATCGTGATAGTAAATCCT+CGG | + | chr3_1:76111969-76111988 | None:intergenic | 30.0% | |
| TAAACAACCAAAAATGGCAA+TGG | + | chr3_1:76112041-76112060 | None:intergenic | 30.0% | |
| !!! | TTGCCATTTTTGGTTGTTTA+TGG | - | chr3_1:76112041-76112060 | Msa0376080:intron | 30.0% |
| GCTTGTCAATGTATGATTTA+TGG | - | chr3_1:76112158-76112177 | Msa0376080:intron | 30.0% | |
| !! | GGTCTTATAGTTTCTAGTAT+TGG | - | chr3_1:76112338-76112357 | Msa0376080:intron | 30.0% |
| AGTTCTTTAATGTTTGTAGC+TGG | - | chr3_1:76112465-76112484 | Msa0376080:intron | 30.0% | |
| AAACACCTAATCACATCATT+GGG | + | chr3_1:76112594-76112613 | None:intergenic | 30.0% | |
| AAAACACCTAATCACATCAT+TGG | + | chr3_1:76112595-76112614 | None:intergenic | 30.0% | |
| ! | TGATTAGGTGTTTTATCCTT+TGG | - | chr3_1:76112601-76112620 | Msa0376080:intron | 30.0% |
| TTAGGTGATTAGGAAATCAT+TGG | + | chr3_1:76112964-76112983 | None:intergenic | 30.0% | |
| GAAATATATTAGCCGGAAAA+AGG | + | chr3_1:76113276-76113295 | None:intergenic | 30.0% | |
| ! | CTAAGAGATTTAAAGCCTAA+TGG | + | chr3_1:76113319-76113338 | None:intergenic | 30.0% |
| !! | CATTAGGCTTTAAATCTCTT+AGG | - | chr3_1:76113317-76113336 | Msa0376080:intron | 30.0% |
| GTAGTTACACAACATCAATT+TGG | - | chr3_1:76113413-76113432 | Msa0376080:intron | 30.0% | |
| !! | CTCATTAAAAGGTGGTTTTA+AGG | + | chr3_1:76113748-76113767 | None:intergenic | 30.0% |
| ! | CTTAAAACCACCTTTTAATG+AGG | - | chr3_1:76113746-76113765 | Msa0376080:intron | 30.0% |
| ATAAGCCATTTATGTCAGTG+AGG | + | chr3_1:76109512-76109531 | None:intergenic | 35.0% | |
| TCTTGCTCATATTGAGAGTT+GGG | - | chr3_1:76109627-76109646 | Msa0376080:CDS | 35.0% | |
| GTAGCATGTATAGATACACA+GGG | + | chr3_1:76109687-76109706 | None:intergenic | 35.0% | |
| AGTAGCATGTATAGATACAC+AGG | + | chr3_1:76109688-76109707 | None:intergenic | 35.0% | |
| CCACATTATTCAGATTTCAC+AGG | + | chr3_1:76109716-76109735 | None:intergenic | 35.0% | |
| CCTGTGAAATCTGAATAATG+TGG | - | chr3_1:76109713-76109732 | Msa0376080:CDS | 35.0% | |
| GTAAACTGCACATTTCAATG+TGG | - | chr3_1:76110037-76110056 | Msa0376080:intron | 35.0% | |
| ATCGATACTTAAGCAGTTTC+GGG | + | chr3_1:76110398-76110417 | None:intergenic | 35.0% | |
| CATCGATACTTAAGCAGTTT+CGG | + | chr3_1:76110399-76110418 | None:intergenic | 35.0% | |
| TCTTAGATACACATCCAACA+AGG | - | chr3_1:76110455-76110474 | Msa0376080:intron | 35.0% | |
| TTACACTTTACTCGCTTTAG+AGG | - | chr3_1:76110668-76110687 | Msa0376080:intron | 35.0% | |
| ACTCTTTCGATTCAAGATGT+TGG | + | chr3_1:76110871-76110890 | None:intergenic | 35.0% | |
| TTTCTCTTCCTGAATAGACT+TGG | - | chr3_1:76110891-76110910 | Msa0376080:intron | 35.0% | |
| TTCTCTTCCTGAATAGACTT+GGG | - | chr3_1:76110892-76110911 | Msa0376080:intron | 35.0% | |
| GATCATAAGAATTGTGACAC+TGG | - | chr3_1:76110929-76110948 | Msa0376080:intron | 35.0% | |
| GAAGATCAAGACTTACGAAA+AGG | + | chr3_1:76111077-76111096 | None:intergenic | 35.0% | |
| ATACTATGTCATGTCGTAGT+AGG | - | chr3_1:76111165-76111184 | Msa0376080:intron | 35.0% | |
| ATATTTGTATACGGCCTTCA+TGG | - | chr3_1:76111262-76111281 | Msa0376080:CDS | 35.0% | |
| TATTTGTATACGGCCTTCAT+GGG | - | chr3_1:76111263-76111282 | Msa0376080:CDS | 35.0% | |
| !! | GGGTTTTATCACTTTATGTG+AGG | - | chr3_1:76111283-76111302 | Msa0376080:CDS | 35.0% |
| TTATCTCTGTGACTAAGCTA+TGG | - | chr3_1:76111379-76111398 | Msa0376080:CDS | 35.0% | |
| TATCTCTGTGACTAAGCTAT+GGG | - | chr3_1:76111380-76111399 | Msa0376080:CDS | 35.0% | |
| GAGATAAGCTAAAGGCAAAT+GGG | + | chr3_1:76111430-76111449 | None:intergenic | 35.0% | |
| AGAGATAAGCTAAAGGCAAA+TGG | + | chr3_1:76111431-76111450 | None:intergenic | 35.0% | |
| TAGTCACAGAGATAAGCTAA+AGG | + | chr3_1:76111374-76111393 | None:intergenic | 35.0% | |
| TTATCTCTGTGACTAAGCTA+TGG | - | chr3_1:76111379-76111398 | Msa0376080:CDS | 35.0% | |
| TATCTCTGTGACTAAGCTAT+GGG | - | chr3_1:76111380-76111399 | Msa0376080:CDS | 35.0% | |
| ! | CAGGATATAATAGCTCGTTT+TGG | - | chr3_1:76111779-76111798 | Msa0376080:intron | 35.0% |
| ATTCTTTACGGATTTCGTGA+AGG | - | chr3_1:76111826-76111845 | Msa0376080:intron | 35.0% | |
| AGTGATCTAGTTGTCTAATG+AGG | + | chr3_1:76112104-76112123 | None:intergenic | 35.0% | |
| !!! | TGGTATTTTTTTGGGAGGTA+AGG | - | chr3_1:76112178-76112197 | Msa0376080:intron | 35.0% |
| !!! | TATTTTTTTGGGAGGTAAGG+TGG | - | chr3_1:76112181-76112200 | Msa0376080:intron | 35.0% |
| !!! | ATTTTTTTGGGAGGTAAGGT+GGG | - | chr3_1:76112182-76112201 | Msa0376080:intron | 35.0% |
| TTTCAGTAAATCAGAGCTTC+TGG | + | chr3_1:76112245-76112264 | None:intergenic | 35.0% | |
| AAGAATTTGTCCTATCTCCT+GGG | - | chr3_1:76112316-76112335 | Msa0376080:intron | 35.0% | |
| GAATTAGGAACTCTTGTCTT+CGG | - | chr3_1:76112508-76112527 | Msa0376080:intron | 35.0% | |
| AACACCTAATCACATCATTG+GGG | + | chr3_1:76112593-76112612 | None:intergenic | 35.0% | |
| !!! | GCAGTTGTTTTTAGGTGATT+AGG | + | chr3_1:76112974-76112993 | None:intergenic | 35.0% |
| !!! | CAATAGCTGCAGTTGTTTTT+AGG | + | chr3_1:76112982-76113001 | None:intergenic | 35.0% |
| ATGCTCAAACTCATCAATTG+AGG | - | chr3_1:76113130-76113149 | Msa0376080:intron | 35.0% | |
| ! | ATTAACGGTTTCCCTTTTTC+CGG | - | chr3_1:76113261-76113280 | Msa0376080:intron | 35.0% |
| TTAATCTAAACTGTACCCCT+TGG | - | chr3_1:76113438-76113457 | Msa0376080:intron | 35.0% | |
| GCACAATGTGTAATTTCTTC+TGG | + | chr3_1:76113573-76113592 | None:intergenic | 35.0% | |
| ! | CAAATTTCTTGATCTGAGGT+TGG | + | chr3_1:76113642-76113661 | None:intergenic | 35.0% |
| TGCACAAATTTCTTGATCTG+AGG | + | chr3_1:76113646-76113665 | None:intergenic | 35.0% | |
| AGATCAAGAAATTTGTGCAG+TGG | - | chr3_1:76113647-76113666 | Msa0376080:CDS | 35.0% | |
| CAAAGTTTCATGCAGTAGTA+AGG | - | chr3_1:76113706-76113725 | Msa0376080:intron | 35.0% | |
| ! | TTTCTAGCAGCCTCATTAAA+AGG | + | chr3_1:76113759-76113778 | None:intergenic | 35.0% |
| !!! | GGCTTATTTTGATGTCTTGC+AGG | - | chr3_1:76109525-76109544 | Msa0376080:CDS | 40.0% |
| GTCTTGCTCATATTGAGAGT+TGG | - | chr3_1:76109626-76109645 | Msa0376080:CDS | 40.0% | |
| ! | ACGAGAAAGTGCAACTTAGT+TGG | - | chr3_1:76109765-76109784 | Msa0376080:CDS | 40.0% |
| CTGCTCTCTCTACTAATATG+AGG | + | chr3_1:76109908-76109927 | None:intergenic | 40.0% | |
| CTCATATTAGTAGAGAGAGC+AGG | - | chr3_1:76109906-76109925 | Msa0376080:intron | 40.0% | |
| ATATTAGTAGAGAGAGCAGG+TGG | - | chr3_1:76109909-76109928 | Msa0376080:intron | 40.0% | |
| TCTCTCTGTCTCCATATTGA+AGG | - | chr3_1:76109980-76109999 | Msa0376080:intron | 40.0% | |
| TATGTGCTACACAACAGCAA+TGG | - | chr3_1:76110092-76110111 | Msa0376080:intron | 40.0% | |
| GTTTAGTATTAAGAGCCTCG+CGG | - | chr3_1:76110128-76110147 | Msa0376080:intron | 40.0% | |
| ACATCCCACATGATTGTTAG+AGG | + | chr3_1:76110190-76110209 | None:intergenic | 40.0% | |
| ACAGAGTGAAAACCGTTGAA+TGG | + | chr3_1:76110345-76110364 | None:intergenic | 40.0% | |
| ! | ATCCTATGAACTAACGGACA+TGG | - | chr3_1:76110368-76110387 | Msa0376080:intron | 40.0% |
| ATCCATGTCCGTTAGTTCAT+AGG | + | chr3_1:76110373-76110392 | None:intergenic | 40.0% | |
| TCACAACTTGGTACAGAACA+AGG | + | chr3_1:76110729-76110748 | None:intergenic | 40.0% | |
| GCATAATCCCAAGTCTATTC+AGG | + | chr3_1:76110902-76110921 | None:intergenic | 40.0% | |
| GACTTGGGATTATGCTTTCT+TGG | - | chr3_1:76110907-76110926 | Msa0376080:intron | 40.0% | |
| AGAATTGTGACACTGGTAAC+TGG | - | chr3_1:76110936-76110955 | Msa0376080:intron | 40.0% | |
| GAGGAGCTAGGTTCTTATTA+TGG | - | chr3_1:76111896-76111915 | Msa0376080:intron | 40.0% | |
| TGATAGTAAATCCTCGGAAG+TGG | + | chr3_1:76111963-76111982 | None:intergenic | 40.0% | |
| AGTTGAACATTGTGTCCATG+AGG | - | chr3_1:76111991-76112010 | Msa0376080:intron | 40.0% | |
| CCAATGTAAGACATACCTCA+TGG | + | chr3_1:76112009-76112028 | None:intergenic | 40.0% | |
| CCATGAGGTATGTCTTACAT+TGG | - | chr3_1:76112006-76112025 | Msa0376080:intron | 40.0% | |
| CAAAAATGGCAATGGCAGAA+AGG | + | chr3_1:76112033-76112052 | None:intergenic | 40.0% | |
| !!! | CTTTCTGCCATTGCCATTTT+TGG | - | chr3_1:76112031-76112050 | Msa0376080:intron | 40.0% |
| !! | TGGAGTGCTTAAGCGATTTT+TGG | - | chr3_1:76112207-76112226 | Msa0376080:intron | 40.0% |
| !! | GGAGTGCTTAAGCGATTTTT+GGG | - | chr3_1:76112208-76112227 | Msa0376080:intron | 40.0% |
| ! | GAGTGCTTAAGCGATTTTTG+GGG | - | chr3_1:76112209-76112228 | Msa0376080:intron | 40.0% |
| CAAGAATTTGTCCTATCTCC+TGG | - | chr3_1:76112315-76112334 | Msa0376080:intron | 40.0% | |
| AGAATTTGTCCTATCTCCTG+GGG | - | chr3_1:76112317-76112336 | Msa0376080:intron | 40.0% | |
| ACTAGAAACTATAAGACCCC+AGG | + | chr3_1:76112336-76112355 | None:intergenic | 40.0% | |
| ! | TTGGTCAAGTCCTTTTCCTT+TGG | - | chr3_1:76112357-76112376 | Msa0376080:intron | 40.0% |
| CTTCAGTTCTCCAAAGGAAA+AGG | + | chr3_1:76112370-76112389 | None:intergenic | 40.0% | |
| AACTCTCTTCAGTTCTCCAA+AGG | + | chr3_1:76112376-76112395 | None:intergenic | 40.0% | |
| TTGGAGAACTGAAGAGAGTT+AGG | - | chr3_1:76112376-76112395 | Msa0376080:intron | 40.0% | |
| CTAATCACATCATTGGGGAA+GGG | + | chr3_1:76112588-76112607 | None:intergenic | 40.0% | |
| TCACAGTTTCACATGTGGTT+TGG | - | chr3_1:76112779-76112798 | Msa0376080:intron | 40.0% | |
| CTCAAACTCATCAATTGAGG+TGG | - | chr3_1:76113133-76113152 | Msa0376080:intron | 40.0% | |
| TACGTGTGTGAGAGAGAAAA+GGG | + | chr3_1:76113396-76113415 | None:intergenic | 40.0% | |
| !!! | TGTTTTGACACTCAACCAAG+GGG | + | chr3_1:76113456-76113475 | None:intergenic | 40.0% |
| !!! | CTGTTTTGACACTCAACCAA+GGG | + | chr3_1:76113457-76113476 | None:intergenic | 40.0% |
| GAAATTACACATTGTGCTGC+TGG | - | chr3_1:76113576-76113595 | Msa0376080:intron | 40.0% | |
| GAAATTTGTGCAGTGGAGAT+TGG | - | chr3_1:76113654-76113673 | Msa0376080:CDS | 40.0% | |
| GAGATTGGAACAACAACAGA+GGG | - | chr3_1:76113669-76113688 | Msa0376080:CDS | 40.0% | |
| AGATTGGAACAACAACAGAG+GGG | - | chr3_1:76113670-76113689 | Msa0376080:CDS | 40.0% | |
| GTAGTAAGGACATGTTTCAG+AGG | - | chr3_1:76113720-76113739 | Msa0376080:intron | 40.0% | |
| AGCAAGAGGTTCATACCATT+CGG | + | chr3_1:76113799-76113818 | None:intergenic | 40.0% | |
| AGGTCGATAGAACGGTTGTA+TGG | + | chr3_1:76109406-76109425 | None:intergenic | 45.0% | |
| GGATGTGAAGGTCGATAGAA+CGG | + | chr3_1:76109414-76109433 | None:intergenic | 45.0% | |
| TGATGTCTTGCAGGTGAAGT+TGG | - | chr3_1:76109534-76109553 | Msa0376080:CDS | 45.0% | |
| CTTCCTGCTTTACCCAACTT+GGG | + | chr3_1:76109577-76109596 | None:intergenic | 45.0% | |
| TTGGGCCATTGATCTTTCGT+GGG | - | chr3_1:76109645-76109664 | Msa0376080:CDS | 45.0% | |
| GAGTACCCACGAAAGATCAA+TGG | + | chr3_1:76109653-76109672 | None:intergenic | 45.0% | |
| TCGCACACTGCAAAGAATCT+CGG | + | chr3_1:76109808-76109827 | None:intergenic | 45.0% | |
| TGTGCGAGTCTCTAACATCA+AGG | - | chr3_1:76109821-76109840 | Msa0376080:intron | 45.0% | |
| CACATGCATTTGCATGTGGA+AGG | - | chr3_1:76110151-76110170 | Msa0376080:intron | 45.0% | |
| ATGCATTTGCATGTGGAAGG+TGG | - | chr3_1:76110154-76110173 | Msa0376080:intron | 45.0% | |
| TGCATTTGCATGTGGAAGGT+GGG | - | chr3_1:76110155-76110174 | Msa0376080:intron | 45.0% | |
| AAATGGAGGCTACACCTTGT+TGG | + | chr3_1:76110472-76110491 | None:intergenic | 45.0% | |
| AAGTGAGTTGCTCACTTTCG+AGG | + | chr3_1:76110551-76110570 | None:intergenic | 45.0% | |
| GTGACACTGGTAACTGGTTA+AGG | - | chr3_1:76110942-76110961 | Msa0376080:intron | 45.0% | |
| TCGTATGATACACAGATGCG+AGG | + | chr3_1:76111228-76111247 | None:intergenic | 45.0% | |
| !! | ACTCGAATTTTAGGGGGCTT+GGG | + | chr3_1:76111596-76111615 | None:intergenic | 45.0% |
| !! | TACTCGAATTTTAGGGGGCT+TGG | + | chr3_1:76111597-76111616 | None:intergenic | 45.0% |
| !! | TCATACAGTTGATGGGCTAC+TGG | - | chr3_1:76111712-76111731 | Msa0376080:intron | 45.0% |
| !! | AGCTCGTTTTGGTAAGCAAG+AGG | - | chr3_1:76111790-76111809 | Msa0376080:intron | 45.0% |
| CTTTACGGATTTCGTGAAGG+TGG | - | chr3_1:76111829-76111848 | Msa0376080:intron | 45.0% | |
| TAGTAAATCCTCGGAAGTGG+AGG | + | chr3_1:76111960-76111979 | None:intergenic | 45.0% | |
| CAGTAAATCAGAGCTTCTGG+AGG | + | chr3_1:76112242-76112261 | None:intergenic | 45.0% | |
| ACTATAAGACCCCAGGAGAT+AGG | + | chr3_1:76112329-76112348 | None:intergenic | 45.0% | |
| !!! | TGTTTTGGGGTAGCACCATA+TGG | - | chr3_1:76112442-76112461 | Msa0376080:intron | 45.0% |
| TGTCTTCGGCAGGACTTAAA+AGG | - | chr3_1:76112522-76112541 | Msa0376080:intron | 45.0% | |
| GTCTTCGGCAGGACTTAAAA+GGG | - | chr3_1:76112523-76112542 | Msa0376080:intron | 45.0% | |
| CCTAATCACATCATTGGGGA+AGG | + | chr3_1:76112589-76112608 | None:intergenic | 45.0% | |
| CCTTCCCCAATGATGTGATT+AGG | - | chr3_1:76112586-76112605 | Msa0376080:intron | 45.0% | |
| GCGTTTCACAGTTTCACATG+TGG | - | chr3_1:76112774-76112793 | Msa0376080:intron | 45.0% | |
| !! | CATGTGGTTTGGTGCTAAGT+TGG | - | chr3_1:76112790-76112809 | Msa0376080:intron | 45.0% |
| CAACTGCAGCTATTGCATCA+AGG | - | chr3_1:76112987-76113006 | Msa0376080:intron | 45.0% | |
| CTACGTGTGTGAGAGAGAAA+AGG | + | chr3_1:76113397-76113416 | None:intergenic | 45.0% | |
| !!! | CCTGTTTTGACACTCAACCA+AGG | + | chr3_1:76113458-76113477 | None:intergenic | 45.0% |
| CCTTGGTTGAGTGTCAAAAC+AGG | - | chr3_1:76113455-76113474 | Msa0376080:intron | 45.0% | |
| CGGAAACGTGAGATTGTTGT+AGG | + | chr3_1:76113501-76113520 | None:intergenic | 45.0% | |
| ACAATCTCACGTTTCCGCAA+TGG | - | chr3_1:76113504-76113523 | Msa0376080:intron | 45.0% | |
| TAGTGTCATCACCACCATTG+CGG | + | chr3_1:76113521-76113540 | None:intergenic | 45.0% | |
| ! | ATTGTGCTGCTGGAGTCAAA+TGG | - | chr3_1:76113586-76113605 | Msa0376080:intron | 45.0% |
| ! | AGGTTGGATTTCTAGACCTC+TGG | + | chr3_1:76113626-76113645 | None:intergenic | 45.0% |
| GGAGATTGGAACAACAACAG+AGG | - | chr3_1:76113668-76113687 | Msa0376080:CDS | 45.0% | |
| GATTGGAACAACAACAGAGG+GGG | - | chr3_1:76113671-76113690 | Msa0376080:CDS | 45.0% | |
| CTAGCAGCCTCATTAAAAGG+TGG | + | chr3_1:76113756-76113775 | None:intergenic | 45.0% | |
| GCTAGAAAAGCTGCTGGATT+TGG | - | chr3_1:76113771-76113790 | Msa0376080:intron | 45.0% | |
| GCAAGAGGTTCATACCATTC+GGG | + | chr3_1:76113798-76113817 | None:intergenic | 45.0% | |
| TTGGGCACTTTAACAGCAAG+AGG | + | chr3_1:76113813-76113832 | None:intergenic | 45.0% | |
| !! | ATATTAAATATATTTGTATA+CGG | - | chr3_1:76111253-76111272 | Msa0376080:CDS | 5.0% |
| !!! | TATTGAATTTTAAATATAAA+AGG | + | chr3_1:76113856-76113875 | None:intergenic | 5.0% |
| AGCTCACGAAGAAACCTTGG+TGG | - | chr3_1:76109282-76109301 | Msa0376080:three_prime_UTR | 50.0% | |
| ACGGTTGTATGGTTCAGCGA+TGG | + | chr3_1:76109395-76109414 | None:intergenic | 50.0% | |
| ! | GAAAGAAAGTGCAGAGACGC+TGG | + | chr3_1:76109458-76109477 | None:intergenic | 50.0% |
| TGTCTTGCAGGTGAAGTTGG+TGG | - | chr3_1:76109537-76109556 | Msa0376080:CDS | 50.0% | |
| ! | ATGCCCAAGTTGGGTAAAGC+AGG | - | chr3_1:76109571-76109590 | Msa0376080:CDS | 50.0% |
| GCTTCCTGCTTTACCCAACT+TGG | + | chr3_1:76109578-76109597 | None:intergenic | 50.0% | |
| AAGCAGGAAGCTTGCAAAGC+AGG | - | chr3_1:76109587-76109606 | Msa0376080:CDS | 50.0% | |
| AGCAGGAAGCTTGCAAAGCA+GGG | - | chr3_1:76109588-76109607 | Msa0376080:CDS | 50.0% | |
| GTTGGGCCATTGATCTTTCG+TGG | - | chr3_1:76109644-76109663 | Msa0376080:CDS | 50.0% | |
| ! | AATCTCGGGTTCTAGCTAGC+AGG | + | chr3_1:76109793-76109812 | None:intergenic | 50.0% |
| CGCACACTGCAAAGAATCTC+GGG | + | chr3_1:76109807-76109826 | None:intergenic | 50.0% | |
| GTTGCTCACTTTCGAGGAAC+CGG | + | chr3_1:76110545-76110564 | None:intergenic | 50.0% | |
| !! | CGCTAGTTCTGCTCACAACT+TGG | + | chr3_1:76110741-76110760 | None:intergenic | 50.0% |
| ACCTTGCAGAGACAGAGAAG+AGG | + | chr3_1:76111510-76111529 | None:intergenic | 50.0% | |
| TGAAGGTGGCACAGGATGAA+GGG | - | chr3_1:76111843-76111862 | Msa0376080:intron | 50.0% | |
| TCTTCTTGCTGCACGACTTG+AGG | - | chr3_1:76111877-76111896 | Msa0376080:intron | 50.0% | |
| TAAATCCTCGGAAGTGGAGG+TGG | + | chr3_1:76111957-76111976 | None:intergenic | 50.0% | |
| TAGGAACTCTTGTCTTCGGC+AGG | - | chr3_1:76112512-76112531 | Msa0376080:intron | 50.0% | |
| ! | TGGCTGGAGCTTTATAGCAC+TGG | + | chr3_1:76112851-76112870 | None:intergenic | 50.0% |
| CTCCAGCCATGACATGATCT+GGG | - | chr3_1:76112862-76112881 | Msa0376080:intron | 50.0% | |
| ACTCCTCCCAGATCATGTCA+TGG | + | chr3_1:76112871-76112890 | None:intergenic | 50.0% | |
| TGACATGATCTGGGAGGAGT+TGG | - | chr3_1:76112871-76112890 | Msa0376080:intron | 50.0% | |
| !! | GGGAGGAGTTGGCTTTATTG+TGG | - | chr3_1:76112882-76112901 | Msa0376080:intron | 50.0% |
| TGAGTGTCAAAACAGGCCAG+AGG | - | chr3_1:76113462-76113481 | Msa0376080:intron | 50.0% | |
| ATCTCACGTTTCCGCAATGG+TGG | - | chr3_1:76113507-76113526 | Msa0376080:intron | 50.0% | |
| CTGCTGGAGTCAAATGGTTC+AGG | - | chr3_1:76113592-76113611 | Msa0376080:intron | 50.0% | |
| GGTTCAGGTATCTATGCCAG+AGG | - | chr3_1:76113607-76113626 | Msa0376080:CDS | 50.0% | |
| GGGAGCTCACGAAGAAACCT+TGG | - | chr3_1:76109279-76109298 | Msa0376080:three_prime_UTR | 55.0% | |
| GGTCGGCGGTGTTCAAAACT+CGG | + | chr3_1:76109318-76109337 | None:intergenic | 55.0% | |
| TCCGAGTCTCATGCCCAAGT+TGG | - | chr3_1:76109561-76109580 | Msa0376080:CDS | 55.0% | |
| CCCAACTTGGGCATGAGACT+CGG | + | chr3_1:76109565-76109584 | None:intergenic | 55.0% | |
| CCGAGTCTCATGCCCAAGTT+GGG | - | chr3_1:76109562-76109581 | Msa0376080:CDS | 55.0% | |
| ATGCAAATGCATGTGCCGCG+AGG | + | chr3_1:76110146-76110165 | None:intergenic | 55.0% | |
| GCGGCACATGCATTTGCATG+TGG | - | chr3_1:76110147-76110166 | Msa0376080:intron | 55.0% | |
| GCCTCTTCTCTGTCTCTGCA+AGG | - | chr3_1:76111506-76111525 | Msa0376080:intron | 55.0% | |
| ! | GGGCTACTGGCCTGCTTTAT+TGG | - | chr3_1:76111725-76111744 | Msa0376080:intron | 55.0% |
| GGATTTCGTGAAGGTGGCAC+AGG | - | chr3_1:76111835-76111854 | Msa0376080:intron | 55.0% | |
| GTGAAGGTGGCACAGGATGA+AGG | - | chr3_1:76111842-76111861 | Msa0376080:intron | 55.0% | |
| !! | GGAGCATTACCGGCTCATGA+CGG | - | chr3_1:76111917-76111936 | Msa0376080:intron | 55.0% |
| !! | TACCGGCTCATGACGGTCTT+TGG | - | chr3_1:76111924-76111943 | Msa0376080:intron | 55.0% |
| ! | ACCGGCTCATGACGGTCTTT+GGG | - | chr3_1:76111925-76111944 | Msa0376080:intron | 55.0% |
| TCCCAAAGACCGTCATGAGC+CGG | + | chr3_1:76111929-76111948 | None:intergenic | 55.0% | |
| TTTGGGAGGTAAGGTGGGAG+TGG | - | chr3_1:76112187-76112206 | Msa0376080:intron | 55.0% | |
| GCTCCAGCCATGACATGATC+TGG | - | chr3_1:76112861-76112880 | Msa0376080:intron | 55.0% | |
| CTCCCAGATCATGTCATGGC+TGG | + | chr3_1:76112867-76112886 | None:intergenic | 55.0% | |
| CAGCCATGACATGATCTGGG+AGG | - | chr3_1:76112865-76112884 | Msa0376080:intron | 55.0% | |
| AGGCAGCACATCAAGTCCTC+TGG | + | chr3_1:76113481-76113500 | None:intergenic | 55.0% | |
| GAGGCTGCTAGAAAAGCTGC+TGG | - | chr3_1:76113765-76113784 | Msa0376080:intron | 55.0% | |
| ! | CTGCTGGATTTGGTCCCGAA+TGG | - | chr3_1:76113781-76113800 | Msa0376080:intron | 55.0% |
| TCGCGCCTTCTCGAATGGGT+CGG | + | chr3_1:76109335-76109354 | None:intergenic | 60.0% | |
| CGAGTCGCGCCTTCTCGAAT+GGG | + | chr3_1:76109339-76109358 | None:intergenic | 60.0% | |
| ! | CCATTCGAGAAGGCGCGACT+CGG | - | chr3_1:76109337-76109356 | Msa0376080:intron | 60.0% |
| TCGGCGACTCAGTCGCTTCA+CGG | - | chr3_1:76109356-76109375 | Msa0376080:intron | 60.0% | |
| AGAGACGCTGGAGAGCCTTG+CGG | + | chr3_1:76109446-76109465 | None:intergenic | 60.0% | |
| GCTGCACGACTTGAGGAGCT+AGG | - | chr3_1:76111884-76111903 | Msa0376080:intron | 60.0% | |
| TTCTGCCACCTCCACTTCCG+AGG | - | chr3_1:76111949-76111968 | Msa0376080:intron | 60.0% | |
| !! | TCGGAGCGCTGCTTCCACCA+AGG | + | chr3_1:76109299-76109318 | None:intergenic | 65.0% |
| CACCGCCGACCCATTCGAGA+AGG | - | chr3_1:76109327-76109346 | Msa0376080:three_prime_UTR | 65.0% | |
| CGCCTTCTCGAATGGGTCGG+CGG | + | chr3_1:76109332-76109351 | None:intergenic | 65.0% | |
| CCGAGTCGCGCCTTCTCGAA+TGG | + | chr3_1:76109340-76109359 | None:intergenic | 65.0% | |
| GCGACTCAGTCGCTTCACGG+TGG | - | chr3_1:76109359-76109378 | Msa0376080:intron | 65.0% | |
| GTCGCTTCACGGTGGCTCGA+TGG | - | chr3_1:76109367-76109386 | Msa0376080:intron | 65.0% | |
| AGACGCTGGAGAGCCTTGCG+GGG | + | chr3_1:76109444-76109463 | None:intergenic | 65.0% | |
| GAGACGCTGGAGAGCCTTGC+GGG | + | chr3_1:76109445-76109464 | None:intergenic | 65.0% | |
| CGGGGCGATCGGGGATGTGA+AGG | + | chr3_1:76109426-76109445 | None:intergenic | 70.0% | |
| ACATCCCCGATCGCCCCGCA+AGG | - | chr3_1:76109428-76109447 | Msa0376080:CDS | 70.0% | |
| AGAGCCTTGCGGGGCGATCG+GGG | + | chr3_1:76109435-76109454 | None:intergenic | 70.0% | |
| GAGAGCCTTGCGGGGCGATC+GGG | + | chr3_1:76109436-76109455 | None:intergenic | 70.0% | |
| GGAGAGCCTTGCGGGGCGAT+CGG | + | chr3_1:76109437-76109456 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 76109242 | 76114020 | 76109242 | ID=Msa0376080;Name=Msa0376080 |
| chr3_1 | mRNA | 76109242 | 76114020 | 76109242 | ID=Msa0376080-mRNA-1;Parent=Msa0376080;Name=Msa0376080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=35|1|1|1|0.75|0.6|5|151|298 |
| chr3_1 | exon | 76109242 | 76109349 | 76109242 | ID=Msa0376080-mRNA-1:exon:17969;Parent=Msa0376080-mRNA-1 |
| chr3_1 | exon | 76109380 | 76109785 | 76109380 | ID=Msa0376080-mRNA-1:exon:17968;Parent=Msa0376080-mRNA-1 |
| chr3_1 | exon | 76111250 | 76111480 | 76111250 | ID=Msa0376080-mRNA-1:exon:17967;Parent=Msa0376080-mRNA-1 |
| chr3_1 | exon | 76113596 | 76113715 | 76113596 | ID=Msa0376080-mRNA-1:exon:17966;Parent=Msa0376080-mRNA-1 |
| chr3_1 | exon | 76113803 | 76114020 | 76113803 | ID=Msa0376080-mRNA-1:exon:17965;Parent=Msa0376080-mRNA-1 |
| chr3_1 | five_prime_UTR | 76113986 | 76114020 | 76113986 | ID=Msa0376080-mRNA-1:five_prime_utr;Parent=Msa0376080-mRNA-1 |
| chr3_1 | CDS | 76113803 | 76113985 | 76113803 | ID=Msa0376080-mRNA-1:cds;Parent=Msa0376080-mRNA-1 |
| chr3_1 | CDS | 76113596 | 76113715 | 76113596 | ID=Msa0376080-mRNA-1:cds;Parent=Msa0376080-mRNA-1 |
| chr3_1 | CDS | 76111250 | 76111480 | 76111250 | ID=Msa0376080-mRNA-1:cds;Parent=Msa0376080-mRNA-1 |
| chr3_1 | CDS | 76109423 | 76109785 | 76109423 | ID=Msa0376080-mRNA-1:cds;Parent=Msa0376080-mRNA-1 |
| chr3_1 | three_prime_UTR | 76109380 | 76109422 | 76109380 | ID=Msa0376080-mRNA-1:three_prime_utr;Parent=Msa0376080-mRNA-1 |
| chr3_1 | three_prime_UTR | 76109242 | 76109349 | 76109242 | ID=Msa0376080-mRNA-1:three_prime_utr;Parent=Msa0376080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
