Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516080 | XP_003602216.2 | 96.980 | 298 | 9 | 0 | 1 | 298 | 1 | 298 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516080 | sp|P43935|Y077_HAEIN | 31.488 | 289 | 151 | 12 | 9 | 283 | 12 | 267 | 3.32e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516080 | G7J6T5 | 96.980 | 298 | 9 | 0 | 1 | 298 | 1 | 298 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0376080 | Msa0516080 | 0.947433 | 6.794581e-106 | -8.615850e-47 |
| Msa0376240 | Msa0516080 | 0.979033 | 4.357653e-147 | -8.615850e-47 |
| Msa0295000 | Msa0516080 | 0.806762 | 7.028987e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516080 | MtrunA17_Chr3g0126561 | 96.980 | 298 | 9 | 0 | 1 | 298 | 1 | 298 | 0.0 | 591 |
| Msa0516080 | MtrunA17_Chr2g0325421 | 35.211 | 284 | 156 | 6 | 7 | 289 | 73 | 329 | 1.68e-45 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516080 | AT5G04520.1 | 77.133 | 293 | 62 | 2 | 6 | 298 | 4 | 291 | 1.06e-169 | 472 |
| Msa0516080 | AT1G06240.1 | 34.364 | 291 | 152 | 7 | 7 | 290 | 81 | 339 | 1.85e-43 | 153 |
Find 96 sgRNAs with CRISPR-Local
Find 330 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCGGCTCATGACGGTCTT+TGG | 0.241495 | 3_4:-67515751 | Msa0516080:CDS |
| TTTCTAGCAGCCTCATTAAA+AGG | 0.268264 | 3_4:+67513919 | None:intergenic |
| GAGGAGCTAGGTTCTTATTA+TGG | 0.271719 | 3_4:-67515779 | Msa0516080:CDS |
| GCACAATGTGTAATTTCTTC+TGG | 0.281336 | 3_4:+67514105 | None:intergenic |
| GAACATTGTTCTTAGAATTT+CGG | 0.286903 | 3_4:-67513690 | Msa0516080:three_prime_UTR |
| GAGAGCCTTGCGGGGCGATC+GGG | 0.312254 | 3_4:+67518258 | None:intergenic |
| GAGACGCTGGAGAGCCTTGC+GGG | 0.312985 | 3_4:+67518249 | None:intergenic |
| GCTAGAAAAGCTGCTGGATT+TGG | 0.337986 | 3_4:-67513904 | Msa0516080:CDS |
| TTCTTATTATGGAGCATTAC+CGG | 0.338235 | 3_4:-67515768 | Msa0516080:CDS |
| ACCGGCTCATGACGGTCTTT+GGG | 0.341500 | 3_4:-67515750 | Msa0516080:CDS |
| GAAATTTGTGCAGTGGAGAT+TGG | 0.366418 | 3_4:-67514021 | Msa0516080:CDS |
| CAGGATATAATAGCTCGTTT+TGG | 0.377718 | 3_4:-67515896 | Msa0516080:CDS |
| CGATTAAAACATCAAATATT+CGG | 0.381140 | 3_4:+67513731 | None:intergenic |
| CGGAAACGTGAGATTGTTGT+AGG | 0.390181 | 3_4:+67514177 | None:intergenic |
| CAAAGTTTCATGCAGTAGTA+AGG | 0.400207 | 3_4:-67513969 | Msa0516080:CDS |
| CCGAGTCGCGCCTTCTCGAA+TGG | 0.413558 | 3_4:+67518354 | None:intergenic |
| GCTTCCTGCTTTACCCAACT+TGG | 0.414688 | 3_4:+67518116 | None:intergenic |
| AGCAAGAGGTTCATACCATT+CGG | 0.420002 | 3_4:+67513879 | None:intergenic |
| AATGCCTAGAGAATTCTTTA+CGG | 0.420102 | 3_4:-67515861 | Msa0516080:CDS |
| GGAGAGCCTTGCGGGGCGAT+CGG | 0.426997 | 3_4:+67518257 | None:intergenic |
| TAAAACTGTTATTATGCATT+GGG | 0.429128 | 3_4:+67513847 | None:intergenic |
| CAAATTTCTTGATCTGAGGT+TGG | 0.437247 | 3_4:+67514036 | None:intergenic |
| CTGCTGGAGTCAAATGGTTC+AGG | 0.438600 | 3_4:-67514083 | Msa0516080:CDS |
| AGGTTGGATTTCTAGACCTC+TGG | 0.439745 | 3_4:+67514052 | None:intergenic |
| TCTTGCTCATATTGAGAGTT+GGG | 0.441722 | 3_4:-67518064 | Msa0516080:CDS |
| AAGCAGGAAGCTTGCAAAGC+AGG | 0.447695 | 3_4:-67518104 | Msa0516080:CDS |
| CGAGTCGCGCCTTCTCGAAT+GGG | 0.449213 | 3_4:+67518355 | None:intergenic |
| CTAAAACTGTTATTATGCAT+TGG | 0.466542 | 3_4:+67513846 | None:intergenic |
| GAAATTACACATTGTGCTGC+TGG | 0.472613 | 3_4:-67514099 | Msa0516080:CDS |
| GTGAAGGTGGCACAGGATGA+AGG | 0.473724 | 3_4:-67515833 | Msa0516080:CDS |
| GTCTTGCTCATATTGAGAGT+TGG | 0.478918 | 3_4:-67518065 | Msa0516080:CDS |
| GTTGGGCCATTGATCTTTCG+TGG | 0.480220 | 3_4:-67518047 | Msa0516080:CDS |
| GCAAGAGGTTCATACCATTC+GGG | 0.486451 | 3_4:+67513880 | None:intergenic |
| TCGGCGACTCAGTCGCTTCA+CGG | 0.490702 | 3_4:-67518335 | Msa0516080:CDS |
| TGATAGTAAATCCTCGGAAG+TGG | 0.492180 | 3_4:+67515715 | None:intergenic |
| CCCAACTTGGGCATGAGACT+CGG | 0.496986 | 3_4:+67518129 | None:intergenic |
| CCGAGTCTCATGCCCAAGTT+GGG | 0.498610 | 3_4:-67518129 | Msa0516080:CDS |
| TGATGTCTTGCAGGTGAAGT+TGG | 0.504862 | 3_4:-67518157 | Msa0516080:intron |
| TCTTCTTGCTGCACGACTTG+AGG | 0.515476 | 3_4:-67515798 | Msa0516080:CDS |
| TCCGAGTCTCATGCCCAAGT+TGG | 0.516672 | 3_4:-67518130 | Msa0516080:CDS |
| GGATTTCGTGAAGGTGGCAC+AGG | 0.519784 | 3_4:-67515840 | Msa0516080:CDS |
| GAGGCTGCTAGAAAAGCTGC+TGG | 0.521511 | 3_4:-67513910 | Msa0516080:CDS |
| CTTCCTGCTTTACCCAACTT+GGG | 0.523510 | 3_4:+67518117 | None:intergenic |
| AGAGCCTTGCGGGGCGATCG+GGG | 0.523900 | 3_4:+67518259 | None:intergenic |
| TGCACAAATTTCTTGATCTG+AGG | 0.526203 | 3_4:+67514032 | None:intergenic |
| CGGGGCGATCGGGGATGTGA+AGG | 0.526577 | 3_4:+67518268 | None:intergenic |
| TAAATCCTCGGAAGTGGAGG+TGG | 0.527096 | 3_4:+67515721 | None:intergenic |
| ATGCCCAAGTTGGGTAAAGC+AGG | 0.527357 | 3_4:-67518120 | Msa0516080:CDS |
| GTCGCTTCACGGTGGCTCGA+TGG | 0.530687 | 3_4:-67518324 | Msa0516080:CDS |
| AGGCAGCACATCAAGTCCTC+TGG | 0.536437 | 3_4:+67514197 | None:intergenic |
| TCCCAAAGACCGTCATGAGC+CGG | 0.536974 | 3_4:+67515749 | None:intergenic |
| AGGTCGACAGAAGGGTTGTA+TGG | 0.539367 | 3_4:+67518288 | None:intergenic |
| AGCAGGAAGCTTGCAAAGCA+GGG | 0.541244 | 3_4:-67518103 | Msa0516080:CDS |
| GCTGCACGACTTGAGGAGCT+AGG | 0.550537 | 3_4:-67515791 | Msa0516080:CDS |
| TTCTGCCACCTCCACTTCCG+AGG | 0.552266 | 3_4:-67515726 | Msa0516080:CDS |
| CCATTCGAGAAGGCGCGACT+CGG | 0.556818 | 3_4:-67518354 | Msa0516080:CDS |
| GAGTACCCACGAAAGATCAA+TGG | 0.559683 | 3_4:+67518041 | None:intergenic |
| GGGATGTGAAGGTCGACAGA+AGG | 0.561012 | 3_4:+67518279 | None:intergenic |
| TTGGGCCATTGATCTTTCGT+GGG | 0.566062 | 3_4:-67518046 | Msa0516080:intron |
| TTGGGCACTTTAACAGCAAG+AGG | 0.569293 | 3_4:+67513865 | None:intergenic |
| AAATCCGTAAAGAATTCTCT+AGG | 0.570912 | 3_4:+67515857 | None:intergenic |
| CGCCTTCTCGAATGGGTCGG+CGG | 0.572024 | 3_4:+67518362 | None:intergenic |
| TGTCTTGCAGGTGAAGTTGG+TGG | 0.573444 | 3_4:-67518154 | Msa0516080:intron |
| ACATCCCCGATCGCCCCGCA+AGG | 0.574608 | 3_4:-67518263 | Msa0516080:CDS |
| TGAAGGTGGCACAGGATGAA+GGG | 0.574869 | 3_4:-67515832 | Msa0516080:CDS |
| CTTTACGGATTTCGTGAAGG+TGG | 0.580964 | 3_4:-67515846 | Msa0516080:CDS |
| TCGCGCCTTCTCGAATGGGT+CGG | 0.583187 | 3_4:+67518359 | None:intergenic |
| GGGAGCTCACGAAGAAACCT+TGG | 0.584147 | 3_4:-67518412 | Msa0516080:CDS |
| GAGATTGGAACAACAACAGA+GGG | 0.585485 | 3_4:-67514006 | Msa0516080:CDS |
| CTGCTGGATTTGGTCCCGAA+TGG | 0.586642 | 3_4:-67513894 | Msa0516080:CDS |
| TAATCGTGATAGTAAATCCT+CGG | 0.588847 | 3_4:+67515709 | None:intergenic |
| CTAGCAGCCTCATTAAAAGG+TGG | 0.590935 | 3_4:+67513922 | None:intergenic |
| GGTCGGCGGTGTTCAAAACT+CGG | 0.593733 | 3_4:+67518376 | None:intergenic |
| ACAATCTCACGTTTCCGCAA+TGG | 0.595156 | 3_4:-67514171 | Msa0516080:CDS |
| GGATGTGAAGGTCGACAGAA+GGG | 0.595370 | 3_4:+67518280 | None:intergenic |
| CACCGCCGACCCATTCGAGA+AGG | 0.607577 | 3_4:-67518364 | Msa0516080:CDS |
| AGATCAAGAAATTTGTGCAG+TGG | 0.613201 | 3_4:-67514028 | Msa0516080:CDS |
| AGAGACGCTGGAGAGCCTTG+CGG | 0.613279 | 3_4:+67518248 | None:intergenic |
| ATTCTTTACGGATTTCGTGA+AGG | 0.620123 | 3_4:-67515849 | Msa0516080:CDS |
| TAGTAAATCCTCGGAAGTGG+AGG | 0.621594 | 3_4:+67515718 | None:intergenic |
| ATCTCACGTTTCCGCAATGG+TGG | 0.621599 | 3_4:-67514168 | Msa0516080:CDS |
| AGCTCACGAAGAAACCTTGG+TGG | 0.624811 | 3_4:-67518409 | Msa0516080:CDS |
| AGACGCTGGAGAGCCTTGCG+GGG | 0.645434 | 3_4:+67518250 | None:intergenic |
| ATTGTGCTGCTGGAGTCAAA+TGG | 0.648838 | 3_4:-67514089 | Msa0516080:CDS |
| TCGGAGCGCTGCTTCCACCA+AGG | 0.652247 | 3_4:+67518395 | None:intergenic |
| AGGGTTGTATGGTTCAGCGA+TGG | 0.654997 | 3_4:+67518299 | None:intergenic |
| GTAGTAAGGACATGTTTCAG+AGG | 0.667960 | 3_4:-67513955 | Msa0516080:CDS |
| TAGTGTCATCACCACCATTG+CGG | 0.670205 | 3_4:+67514157 | None:intergenic |
| GGAGCATTACCGGCTCATGA+CGG | 0.674476 | 3_4:-67515758 | Msa0516080:CDS |
| GGTTCAGGTATCTATGCCAG+AGG | 0.683892 | 3_4:-67514068 | Msa0516080:CDS |
| AGTTGAACATTGTGTCCATG+AGG | 0.684180 | 3_4:-67515684 | Msa0516080:intron |
| GATTGGAACAACAACAGAGG+GGG | 0.690681 | 3_4:-67514004 | Msa0516080:CDS |
| TGAGTGTCAAAACAGGCCAG+AGG | 0.714367 | 3_4:-67514213 | Msa0516080:intron |
| GGAGATTGGAACAACAACAG+AGG | 0.721744 | 3_4:-67514007 | Msa0516080:CDS |
| GCGACTCAGTCGCTTCACGG+TGG | 0.729190 | 3_4:-67518332 | Msa0516080:CDS |
| AGATTGGAACAACAACAGAG+GGG | 0.798618 | 3_4:-67514005 | Msa0516080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTAGTATAATTTAAAAT+CGG | - | chr3_4:67514165-67514184 | Msa0516080:CDS | 10.0% |
| !!! | TTAAAAACCAATAAATTTTA+TGG | - | chr3_4:67514393-67514412 | Msa0516080:intron | 10.0% |
| !!! | ATTTAAAATAAGTTTTGTTA+AGG | - | chr3_4:67514519-67514538 | Msa0516080:intron | 10.0% |
| !!! | TTTAAAATAAGTTTTGTTAA+GGG | - | chr3_4:67514520-67514539 | Msa0516080:intron | 10.0% |
| !!! | ATTATTTTTCTGTTAAAAAA+TGG | + | chr3_4:67514941-67514960 | None:intergenic | 10.0% |
| !! | TAAATTTAAAGATATTGATA+TGG | + | chr3_4:67515643-67515662 | None:intergenic | 10.0% |
| !! | AACATATTTATAAAAAGAAA+CGG | + | chr3_4:67518375-67518394 | None:intergenic | 10.0% |
| !!! | ATTTATTGGTTTTTAATAGT+GGG | + | chr3_4:67514389-67514408 | None:intergenic | 15.0% |
| !!! | AATTTATTGGTTTTTAATAG+TGG | + | chr3_4:67514390-67514409 | None:intergenic | 15.0% |
| !! | AAGAATTCCATAAAATTTAT+TGG | + | chr3_4:67514403-67514422 | None:intergenic | 15.0% |
| !! | AAATAAAAAATCCTTCAATA+TGG | + | chr3_4:67514446-67514465 | None:intergenic | 15.0% |
| !! | AAGTTAAGAACTATTATAAT+TGG | + | chr3_4:67514767-67514786 | None:intergenic | 15.0% |
| !!! | TAGAAAGCTTTTTTTAAATT+GGG | + | chr3_4:67515153-67515172 | None:intergenic | 15.0% |
| !!! | ATAGAAAGCTTTTTTTAAAT+TGG | + | chr3_4:67515154-67515173 | None:intergenic | 15.0% |
| !!! | ACAATAATGTATTTTTTACA+TGG | - | chr3_4:67515444-67515463 | Msa0516080:intron | 15.0% |
| !! | TTGTTAAACTAAAATTTAGT+TGG | - | chr3_4:67516090-67516109 | Msa0516080:intron | 15.0% |
| !!! | TATGATTTATGGTATTTTTT+TGG | - | chr3_4:67516621-67516640 | Msa0516080:intron | 15.0% |
| !!! | ATGATTTATGGTATTTTTTT+GGG | - | chr3_4:67516622-67516641 | Msa0516080:intron | 15.0% |
| !!! | AATATCAGAAATTTTGAATT+AGG | - | chr3_4:67516945-67516964 | Msa0516080:intron | 15.0% |
| !! | AGTATAACTATTGAATTAAA+AGG | - | chr3_4:67517273-67517292 | Msa0516080:intron | 15.0% |
| !! | GTATAACTATTGAATTAAAA+GGG | - | chr3_4:67517274-67517293 | Msa0516080:intron | 15.0% |
| !!! | AAATCGATTTATTGTTTATT+AGG | - | chr3_4:67517667-67517686 | Msa0516080:intron | 15.0% |
| !! | CCTTCAAAAAAAAAAAAAAA+CGG | + | chr3_4:67518345-67518364 | None:intergenic | 15.0% |
| !! | TGAAAAAACAGAAAAATATC+TGG | - | chr3_4:67514301-67514320 | Msa0516080:intron | 20.0% |
| !! | GAAAAAACAGAAAAATATCT+GGG | - | chr3_4:67514302-67514321 | Msa0516080:intron | 20.0% |
| !! | ATTAGAGTAATAAGAAAGAT+TGG | - | chr3_4:67514735-67514754 | Msa0516080:intron | 20.0% |
| !! | TTAGAGTAATAAGAAAGATT+GGG | - | chr3_4:67514736-67514755 | Msa0516080:intron | 20.0% |
| !!! | ATTTTTCTGTTAAAAAATGG+AGG | + | chr3_4:67514938-67514957 | None:intergenic | 20.0% |
| !! | AGATCAAAGAATTAATAAAG+GGG | + | chr3_4:67515222-67515241 | None:intergenic | 20.0% |
| !! | CAGATCAAAGAATTAATAAA+GGG | + | chr3_4:67515223-67515242 | None:intergenic | 20.0% |
| !!! | TTTATCAGCAAATTTTGTTT+TGG | - | chr3_4:67516879-67516898 | Msa0516080:intron | 20.0% |
| !!! | TTATCAGCAAATTTTGTTTT+GGG | - | chr3_4:67516880-67516899 | Msa0516080:intron | 20.0% |
| !! | GAAAAAAAATACATAACCAA+AGG | + | chr3_4:67517072-67517091 | None:intergenic | 20.0% |
| !!! | ATTAACCTTTTGCAAATATA+AGG | + | chr3_4:67517380-67517399 | None:intergenic | 20.0% |
| !! | TAAAATGGAGTAAACATTAA+CGG | - | chr3_4:67517698-67517717 | Msa0516080:intron | 20.0% |
| !! | TTAAATGGAAATATATTAGC+CGG | + | chr3_4:67517735-67517754 | None:intergenic | 20.0% |
| !! | GGCAATAATACTAAATTAAA+TGG | + | chr3_4:67517750-67517769 | None:intergenic | 20.0% |
| !! | AATTTAGTATTATTGCCATT+AGG | - | chr3_4:67517753-67517772 | Msa0516080:intron | 20.0% |
| !! | AGACTAAAATTATCTTAGAA+TGG | - | chr3_4:67517812-67517831 | Msa0516080:intron | 20.0% |
| !! | GACTAAAATTATCTTAGAAT+GGG | - | chr3_4:67517813-67517832 | Msa0516080:intron | 20.0% |
| !! | TAAAACTGTTATTATGCATT+GGG | + | chr3_4:67518283-67518302 | None:intergenic | 20.0% |
| !!! | CCGTTTTTTTTTTTTTTTGA+AGG | - | chr3_4:67518342-67518361 | Msa0516080:CDS | 20.0% |
| !! | CGATTAAAACATCAAATATT+CGG | + | chr3_4:67518399-67518418 | None:intergenic | 20.0% |
| !!! | ATTTTTCAACATATCGAGAT+GGG | - | chr3_4:67513695-67513714 | Msa0516080:three_prime_UTR | 25.0% |
| ! | TTAGAATATAAATGTGGGAA+CGG | + | chr3_4:67514334-67514353 | None:intergenic | 25.0% |
| ! | TAGAGTAATAAGAAAGATTG+GGG | - | chr3_4:67514737-67514756 | Msa0516080:intron | 25.0% |
| !! | TGTTTTATCCTATGAACTAA+CGG | - | chr3_4:67514814-67514833 | Msa0516080:intron | 25.0% |
| !! | CATTTGAGATACAATTTGAA+AGG | - | chr3_4:67514969-67514988 | Msa0516080:intron | 25.0% |
| ! | ATCAACCATTAATTAATTGC+AGG | - | chr3_4:67515043-67515062 | Msa0516080:intron | 25.0% |
| ! | ATGTACCTGCAATTAATTAA+TGG | + | chr3_4:67515051-67515070 | None:intergenic | 25.0% |
| ! | CCAGATCAAAGAATTAATAA+AGG | + | chr3_4:67515224-67515243 | None:intergenic | 25.0% |
| ! | CCTTTATTAATTCTTTGATC+TGG | - | chr3_4:67515221-67515240 | Msa0516080:intron | 25.0% |
| ! | ACAAAAAATAGAGAGACATA+TGG | - | chr3_4:67515248-67515267 | Msa0516080:intron | 25.0% |
| !!! | TACATGTTCTATTTTGATCA+TGG | - | chr3_4:67515291-67515310 | Msa0516080:intron | 25.0% |
| ! | AATACATCTGACATATTTAG+AGG | - | chr3_4:67515420-67515439 | Msa0516080:intron | 25.0% |
| ! | ATACATCTGACATATTTAGA+GGG | - | chr3_4:67515421-67515440 | Msa0516080:intron | 25.0% |
| !!! | ATTATTTTGTACGAAGAAGA+AGG | + | chr3_4:67515768-67515787 | None:intergenic | 25.0% |
| ! | TAAACATAAATCTTCTTTGG+CGG | - | chr3_4:67515920-67515939 | Msa0516080:intron | 25.0% |
| !! | TGCAATTTACTCGAATTTTA+GGG | + | chr3_4:67516056-67516075 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTCATACAGTTGA+TGG | - | chr3_4:67516156-67516175 | Msa0516080:intron | 25.0% |
| !!! | AGTTTTTTCATACAGTTGAT+GGG | - | chr3_4:67516157-67516176 | Msa0516080:intron | 25.0% |
| !! | AATACTTTTACCAATAAAGC+AGG | + | chr3_4:67516190-67516209 | None:intergenic | 25.0% |
| ! | AAACCATAAACAACCAAAAA+TGG | + | chr3_4:67516499-67516518 | None:intergenic | 25.0% |
| !!! | ATTTATGGTATTTTTTTGGG+AGG | - | chr3_4:67516625-67516644 | Msa0516080:intron | 25.0% |
| !!! | TATCAGCAAATTTTGTTTTG+GGG | - | chr3_4:67516881-67516900 | Msa0516080:intron | 25.0% |
| ! | AAACATTAAAGAACTCCATA+TGG | + | chr3_4:67516912-67516931 | None:intergenic | 25.0% |
| !! | TGATTTTTATCTAACAGTGT+AGG | + | chr3_4:67517096-67517115 | None:intergenic | 25.0% |
| ! | GAAACAATCAAGTGAAAATA+AGG | - | chr3_4:67517129-67517148 | Msa0516080:intron | 25.0% |
| !!! | TTTAGCCTTATATTTGCAAA+AGG | - | chr3_4:67517372-67517391 | Msa0516080:intron | 25.0% |
| ! | AATGATGTAATCATGCAATA+AGG | + | chr3_4:67517534-67517553 | None:intergenic | 25.0% |
| ! | TATTAGGTCAACAACTAAAA+TGG | - | chr3_4:67517683-67517702 | Msa0516080:intron | 25.0% |
| ! | AAATATATTAGCCGGAAAAA+GGG | + | chr3_4:67517727-67517746 | None:intergenic | 25.0% |
| !!! | TCATTAAAAGGTGGTTTTAA+GGG | + | chr3_4:67518199-67518218 | None:intergenic | 25.0% |
| ! | CTAAAACTGTTATTATGCAT+TGG | + | chr3_4:67518284-67518303 | None:intergenic | 25.0% |
| !! | CAATGCATAATAACAGTTTT+AGG | - | chr3_4:67518282-67518301 | Msa0516080:CDS | 25.0% |
| ! | GAACATTGTTCTTAGAATTT+CGG | - | chr3_4:67518437-67518456 | Msa0516080:five_prime_UTR | 25.0% |
| !! | CATTTTTCAACATATCGAGA+TGG | - | chr3_4:67513694-67513713 | Msa0516080:three_prime_UTR | 30.0% |
| !! | GAACACAAGAAGAGTATTAT+TGG | + | chr3_4:67513916-67513935 | None:intergenic | 30.0% |
| AAATTCCTCACTGACATAAA+TGG | - | chr3_4:67513940-67513959 | Msa0516080:CDS | 30.0% | |
| CTACATTATTCAGATTTCAC+AGG | + | chr3_4:67514152-67514171 | None:intergenic | 30.0% | |
| GGCTGTTAGAATATAAATGT+GGG | + | chr3_4:67514339-67514358 | None:intergenic | 30.0% | |
| AGGCTGTTAGAATATAAATG+TGG | + | chr3_4:67514340-67514359 | None:intergenic | 30.0% | |
| AAATGTGCAGTTTACATACA+TGG | + | chr3_4:67514484-67514503 | None:intergenic | 30.0% | |
| TTTAACCTCTAACAATCATG+TGG | - | chr3_4:67514634-67514653 | Msa0516080:intron | 30.0% | |
| TTAACCTCTAACAATCATGT+GGG | - | chr3_4:67514635-67514654 | Msa0516080:intron | 30.0% | |
| !! | AACTTTTTCTTGCCATTCAA+CGG | - | chr3_4:67514782-67514801 | Msa0516080:intron | 30.0% |
| ! | TAAGAGCACATTATGCATAT+TGG | + | chr3_4:67514892-67514911 | None:intergenic | 30.0% |
| AGATACAATTTGAAAGGATC+CGG | - | chr3_4:67514975-67514994 | Msa0516080:intron | 30.0% | |
| GTGTAAAGTGAGAAAATCAA+GGG | + | chr3_4:67515106-67515125 | None:intergenic | 30.0% | |
| AGTGTAAAGTGAGAAAATCA+AGG | + | chr3_4:67515107-67515126 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTTTAAATTGGGCA+AGG | + | chr3_4:67515148-67515167 | None:intergenic | 30.0% |
| !!! | ATGTTCTATTTTGATCATGG+TGG | - | chr3_4:67515294-67515313 | Msa0516080:intron | 30.0% |
| TAAAGTGATAAAACCCATGA+AGG | + | chr3_4:67515731-67515750 | None:intergenic | 30.0% | |
| GAGATAAGCTAAAAGCAAAT+GGG | + | chr3_4:67515818-67515837 | None:intergenic | 30.0% | |
| AGAGATAAGCTAAAAGCAAA+TGG | + | chr3_4:67515819-67515838 | None:intergenic | 30.0% | |
| GGCTAAACATAAATCTTCTT+TGG | - | chr3_4:67515917-67515936 | Msa0516080:intron | 30.0% | |
| CTTGATTTAGACTAGAAGAT+AGG | + | chr3_4:67515996-67516015 | None:intergenic | 30.0% | |
| ! | CAATTTACTCGAATTTTAGG+GGG | + | chr3_4:67516054-67516073 | None:intergenic | 30.0% |
| ! | GCAATTTACTCGAATTTTAG+GGG | + | chr3_4:67516055-67516074 | None:intergenic | 30.0% |
| ! | GTGCAATTTACTCGAATTTT+AGG | + | chr3_4:67516057-67516076 | None:intergenic | 30.0% |
| !! | TGCATTTGTTATCGTTTGTT+TGG | - | chr3_4:67516125-67516144 | Msa0516080:intron | 30.0% |
| GATGTATAATGAATTCTTGC+AGG | - | chr3_4:67516212-67516231 | Msa0516080:intron | 30.0% | |
| AATGCCTAGAGAATTCTTTA+CGG | - | chr3_4:67516266-67516285 | Msa0516080:intron | 30.0% | |
| AAATCCGTAAAGAATTCTCT+AGG | + | chr3_4:67516273-67516292 | None:intergenic | 30.0% | |
| ! | TTCTTATTATGGAGCATTAC+CGG | - | chr3_4:67516359-67516378 | Msa0516080:intron | 30.0% |
| TAATCGTGATAGTAAATCCT+CGG | + | chr3_4:67516421-67516440 | None:intergenic | 30.0% | |
| TAAACAACCAAAAATGGCAA+TGG | + | chr3_4:67516493-67516512 | None:intergenic | 30.0% | |
| !!! | TTGCCATTTTTGGTTGTTTA+TGG | - | chr3_4:67516493-67516512 | Msa0516080:intron | 30.0% |
| GCTTGTCAATGTATGATTTA+TGG | - | chr3_4:67516610-67516629 | Msa0516080:intron | 30.0% | |
| !! | GGTCTTATAGTTTCTAGTAT+TGG | - | chr3_4:67516790-67516809 | Msa0516080:intron | 30.0% |
| AGTTCTTTAATGTTTGTAGC+TGG | - | chr3_4:67516917-67516936 | Msa0516080:intron | 30.0% | |
| AAACACCTAATCACATCATT+GGG | + | chr3_4:67517046-67517065 | None:intergenic | 30.0% | |
| AAAACACCTAATCACATCAT+TGG | + | chr3_4:67517047-67517066 | None:intergenic | 30.0% | |
| ! | TGATTAGGTGTTTTATCCTT+TGG | - | chr3_4:67517053-67517072 | Msa0516080:intron | 30.0% |
| TTAGGTGATTAGGAAATCAT+TGG | + | chr3_4:67517416-67517435 | None:intergenic | 30.0% | |
| GAAATATATTAGCCGGAAAA+AGG | + | chr3_4:67517728-67517747 | None:intergenic | 30.0% | |
| ! | CTAAGAGATTTAAAGCCTAA+TGG | + | chr3_4:67517771-67517790 | None:intergenic | 30.0% |
| !! | CATTAGGCTTTAAATCTCTT+AGG | - | chr3_4:67517769-67517788 | Msa0516080:intron | 30.0% |
| GTAGTTACACAACATCAATT+TGG | - | chr3_4:67517865-67517884 | Msa0516080:intron | 30.0% | |
| !! | CTCATTAAAAGGTGGTTTTA+AGG | + | chr3_4:67518200-67518219 | None:intergenic | 30.0% |
| ! | CTTAAAACCACCTTTTAATG+AGG | - | chr3_4:67518198-67518217 | Msa0516080:intron | 30.0% |
| ATAAGCCATTTATGTCAGTG+AGG | + | chr3_4:67513948-67513967 | None:intergenic | 35.0% | |
| TCTTGCTCATATTGAGAGTT+GGG | - | chr3_4:67514063-67514082 | Msa0516080:CDS | 35.0% | |
| GTAGCATGTATAGATACACA+GGG | + | chr3_4:67514123-67514142 | None:intergenic | 35.0% | |
| AGTAGCATGTATAGATACAC+AGG | + | chr3_4:67514124-67514143 | None:intergenic | 35.0% | |
| GTAAACTGCACATTTCAATG+TGG | - | chr3_4:67514489-67514508 | Msa0516080:intron | 35.0% | |
| ATCGATACTTAAGCAGTTTC+GGG | + | chr3_4:67514850-67514869 | None:intergenic | 35.0% | |
| CATCGATACTTAAGCAGTTT+CGG | + | chr3_4:67514851-67514870 | None:intergenic | 35.0% | |
| TCTTAGATACACATCCAACA+AGG | - | chr3_4:67514907-67514926 | Msa0516080:intron | 35.0% | |
| TTACACTTTACTCGCTTTAG+AGG | - | chr3_4:67515120-67515139 | Msa0516080:intron | 35.0% | |
| ACTCTTTCGATTCAAGATGT+TGG | + | chr3_4:67515323-67515342 | None:intergenic | 35.0% | |
| TTTCTCTTCCTGAATAGACT+TGG | - | chr3_4:67515343-67515362 | Msa0516080:intron | 35.0% | |
| TTCTCTTCCTGAATAGACTT+GGG | - | chr3_4:67515344-67515363 | Msa0516080:intron | 35.0% | |
| GATCATAAGAATTGTGACAC+TGG | - | chr3_4:67515381-67515400 | Msa0516080:intron | 35.0% | |
| GAAGATCAAGACTTACGAAA+AGG | + | chr3_4:67515529-67515548 | None:intergenic | 35.0% | |
| ATACTATGTCATGTCGTAGT+AGG | - | chr3_4:67515617-67515636 | Msa0516080:intron | 35.0% | |
| ATATTTGTATACGGCCTTCA+TGG | - | chr3_4:67515714-67515733 | Msa0516080:CDS | 35.0% | |
| TATTTGTATACGGCCTTCAT+GGG | - | chr3_4:67515715-67515734 | Msa0516080:CDS | 35.0% | |
| !! | GGGTTTTATCACTTTATGTG+AGG | - | chr3_4:67515735-67515754 | Msa0516080:CDS | 35.0% |
| TTATCTCTGTGACTAAGCTA+TGG | - | chr3_4:67515831-67515850 | Msa0516080:CDS | 35.0% | |
| TATCTCTGTGACTAAGCTAT+GGG | - | chr3_4:67515832-67515851 | Msa0516080:CDS | 35.0% | |
| GAGATAAGCTAAAGGCAAAT+GGG | + | chr3_4:67515882-67515901 | None:intergenic | 35.0% | |
| AGAGATAAGCTAAAGGCAAA+TGG | + | chr3_4:67515883-67515902 | None:intergenic | 35.0% | |
| TAGTCACAGAGATAAGCTAA+AGG | + | chr3_4:67515826-67515845 | None:intergenic | 35.0% | |
| TTATCTCTGTGACTAAGCTA+TGG | - | chr3_4:67515831-67515850 | Msa0516080:CDS | 35.0% | |
| TATCTCTGTGACTAAGCTAT+GGG | - | chr3_4:67515832-67515851 | Msa0516080:CDS | 35.0% | |
| ! | CAGGATATAATAGCTCGTTT+TGG | - | chr3_4:67516231-67516250 | Msa0516080:intron | 35.0% |
| ATTCTTTACGGATTTCGTGA+AGG | - | chr3_4:67516278-67516297 | Msa0516080:intron | 35.0% | |
| AGTGATCTAGTTGTCTAATG+AGG | + | chr3_4:67516556-67516575 | None:intergenic | 35.0% | |
| !!! | TGGTATTTTTTTGGGAGGTA+AGG | - | chr3_4:67516630-67516649 | Msa0516080:intron | 35.0% |
| !!! | TATTTTTTTGGGAGGTAAGG+TGG | - | chr3_4:67516633-67516652 | Msa0516080:intron | 35.0% |
| !!! | ATTTTTTTGGGAGGTAAGGT+GGG | - | chr3_4:67516634-67516653 | Msa0516080:intron | 35.0% |
| TTTCAGTAAATCAGAGCTTC+TGG | + | chr3_4:67516697-67516716 | None:intergenic | 35.0% | |
| AAGAATTTGTCCTATCTCCT+GGG | - | chr3_4:67516768-67516787 | Msa0516080:intron | 35.0% | |
| GAATTAGGAACTCTTGTCTT+CGG | - | chr3_4:67516960-67516979 | Msa0516080:intron | 35.0% | |
| AACACCTAATCACATCATTG+GGG | + | chr3_4:67517045-67517064 | None:intergenic | 35.0% | |
| !!! | GCAGTTGTTTTTAGGTGATT+AGG | + | chr3_4:67517426-67517445 | None:intergenic | 35.0% |
| !!! | CAATAGCTGCAGTTGTTTTT+AGG | + | chr3_4:67517434-67517453 | None:intergenic | 35.0% |
| ATGCTCAAACTCATCAATTG+AGG | - | chr3_4:67517582-67517601 | Msa0516080:intron | 35.0% | |
| ! | ATTAACGGTTTCCCTTTTTC+CGG | - | chr3_4:67517713-67517732 | Msa0516080:intron | 35.0% |
| TTAATCTAAACTGTACCCCT+TGG | - | chr3_4:67517890-67517909 | Msa0516080:intron | 35.0% | |
| GCACAATGTGTAATTTCTTC+TGG | + | chr3_4:67518025-67518044 | None:intergenic | 35.0% | |
| ! | CAAATTTCTTGATCTGAGGT+TGG | + | chr3_4:67518094-67518113 | None:intergenic | 35.0% |
| TGCACAAATTTCTTGATCTG+AGG | + | chr3_4:67518098-67518117 | None:intergenic | 35.0% | |
| AGATCAAGAAATTTGTGCAG+TGG | - | chr3_4:67518099-67518118 | Msa0516080:CDS | 35.0% | |
| CAAAGTTTCATGCAGTAGTA+AGG | - | chr3_4:67518158-67518177 | Msa0516080:intron | 35.0% | |
| ! | TTTCTAGCAGCCTCATTAAA+AGG | + | chr3_4:67518211-67518230 | None:intergenic | 35.0% |
| !!! | GGCTTATTTTGATGTCTTGC+AGG | - | chr3_4:67513961-67513980 | Msa0516080:CDS | 40.0% |
| GTCTTGCTCATATTGAGAGT+TGG | - | chr3_4:67514062-67514081 | Msa0516080:CDS | 40.0% | |
| ! | ACGAGAAAGTGCAACTTAGT+TGG | - | chr3_4:67514217-67514236 | Msa0516080:intron | 40.0% |
| CTGCTCTCTCTACTAATATG+AGG | + | chr3_4:67514360-67514379 | None:intergenic | 40.0% | |
| CTCATATTAGTAGAGAGAGC+AGG | - | chr3_4:67514358-67514377 | Msa0516080:intron | 40.0% | |
| ATATTAGTAGAGAGAGCAGG+TGG | - | chr3_4:67514361-67514380 | Msa0516080:intron | 40.0% | |
| TCTCTCTGTCTCCATATTGA+AGG | - | chr3_4:67514432-67514451 | Msa0516080:intron | 40.0% | |
| TATGTGCTACACAACAGCAA+TGG | - | chr3_4:67514544-67514563 | Msa0516080:intron | 40.0% | |
| GTTTAGTATTAAGAGCCTCG+CGG | - | chr3_4:67514580-67514599 | Msa0516080:intron | 40.0% | |
| ACATCCCACATGATTGTTAG+AGG | + | chr3_4:67514642-67514661 | None:intergenic | 40.0% | |
| ACAGAGTGAAAACCGTTGAA+TGG | + | chr3_4:67514797-67514816 | None:intergenic | 40.0% | |
| ! | ATCCTATGAACTAACGGACA+TGG | - | chr3_4:67514820-67514839 | Msa0516080:intron | 40.0% |
| ATCCATGTCCGTTAGTTCAT+AGG | + | chr3_4:67514825-67514844 | None:intergenic | 40.0% | |
| TCACAACTTGGTACAGAACA+AGG | + | chr3_4:67515181-67515200 | None:intergenic | 40.0% | |
| GCATAATCCCAAGTCTATTC+AGG | + | chr3_4:67515354-67515373 | None:intergenic | 40.0% | |
| GACTTGGGATTATGCTTTCT+TGG | - | chr3_4:67515359-67515378 | Msa0516080:intron | 40.0% | |
| AGAATTGTGACACTGGTAAC+TGG | - | chr3_4:67515388-67515407 | Msa0516080:intron | 40.0% | |
| GAGGAGCTAGGTTCTTATTA+TGG | - | chr3_4:67516348-67516367 | Msa0516080:intron | 40.0% | |
| TGATAGTAAATCCTCGGAAG+TGG | + | chr3_4:67516415-67516434 | None:intergenic | 40.0% | |
| AGTTGAACATTGTGTCCATG+AGG | - | chr3_4:67516443-67516462 | Msa0516080:intron | 40.0% | |
| CCAATGTAAGACATACCTCA+TGG | + | chr3_4:67516461-67516480 | None:intergenic | 40.0% | |
| CCATGAGGTATGTCTTACAT+TGG | - | chr3_4:67516458-67516477 | Msa0516080:intron | 40.0% | |
| CAAAAATGGCAATGGCAGAA+AGG | + | chr3_4:67516485-67516504 | None:intergenic | 40.0% | |
| !!! | CTTTCTGCCATTGCCATTTT+TGG | - | chr3_4:67516483-67516502 | Msa0516080:intron | 40.0% |
| !! | TGGAGTGCTTAAGCGATTTT+TGG | - | chr3_4:67516659-67516678 | Msa0516080:intron | 40.0% |
| !! | GGAGTGCTTAAGCGATTTTT+GGG | - | chr3_4:67516660-67516679 | Msa0516080:intron | 40.0% |
| ! | GAGTGCTTAAGCGATTTTTG+GGG | - | chr3_4:67516661-67516680 | Msa0516080:intron | 40.0% |
| CAAGAATTTGTCCTATCTCC+TGG | - | chr3_4:67516767-67516786 | Msa0516080:intron | 40.0% | |
| AGAATTTGTCCTATCTCCTG+GGG | - | chr3_4:67516769-67516788 | Msa0516080:intron | 40.0% | |
| ACTAGAAACTATAAGACCCC+AGG | + | chr3_4:67516788-67516807 | None:intergenic | 40.0% | |
| ! | TTGGTCAAGTCCTTTTCCTT+TGG | - | chr3_4:67516809-67516828 | Msa0516080:intron | 40.0% |
| CTTCAGTTCTCCAAAGGAAA+AGG | + | chr3_4:67516822-67516841 | None:intergenic | 40.0% | |
| AACTCTCTTCAGTTCTCCAA+AGG | + | chr3_4:67516828-67516847 | None:intergenic | 40.0% | |
| TTGGAGAACTGAAGAGAGTT+AGG | - | chr3_4:67516828-67516847 | Msa0516080:intron | 40.0% | |
| CTAATCACATCATTGGGGAA+GGG | + | chr3_4:67517040-67517059 | None:intergenic | 40.0% | |
| TCACAGTTTCACATGTGGTT+TGG | - | chr3_4:67517231-67517250 | Msa0516080:intron | 40.0% | |
| CTCAAACTCATCAATTGAGG+TGG | - | chr3_4:67517585-67517604 | Msa0516080:intron | 40.0% | |
| TACGTGTGTGAGAGAGAAAA+GGG | + | chr3_4:67517848-67517867 | None:intergenic | 40.0% | |
| !!! | TGTTTTGACACTCAACCAAG+GGG | + | chr3_4:67517908-67517927 | None:intergenic | 40.0% |
| !!! | CTGTTTTGACACTCAACCAA+GGG | + | chr3_4:67517909-67517928 | None:intergenic | 40.0% |
| GAAATTACACATTGTGCTGC+TGG | - | chr3_4:67518028-67518047 | Msa0516080:intron | 40.0% | |
| GAAATTTGTGCAGTGGAGAT+TGG | - | chr3_4:67518106-67518125 | Msa0516080:CDS | 40.0% | |
| GAGATTGGAACAACAACAGA+GGG | - | chr3_4:67518121-67518140 | Msa0516080:CDS | 40.0% | |
| AGATTGGAACAACAACAGAG+GGG | - | chr3_4:67518122-67518141 | Msa0516080:CDS | 40.0% | |
| GTAGTAAGGACATGTTTCAG+AGG | - | chr3_4:67518172-67518191 | Msa0516080:intron | 40.0% | |
| AGCAAGAGGTTCATACCATT+CGG | + | chr3_4:67518251-67518270 | None:intergenic | 40.0% | |
| TGATGTCTTGCAGGTGAAGT+TGG | - | chr3_4:67513970-67513989 | Msa0516080:CDS | 45.0% | |
| CTTCCTGCTTTACCCAACTT+GGG | + | chr3_4:67514013-67514032 | None:intergenic | 45.0% | |
| TTGGGCCATTGATCTTTCGT+GGG | - | chr3_4:67514081-67514100 | Msa0516080:CDS | 45.0% | |
| GAGTACCCACGAAAGATCAA+TGG | + | chr3_4:67514089-67514108 | None:intergenic | 45.0% | |
| TGTGCGAGTCTCTAACATCA+AGG | - | chr3_4:67514273-67514292 | Msa0516080:intron | 45.0% | |
| CACATGCATTTGCATGTGGA+AGG | - | chr3_4:67514603-67514622 | Msa0516080:intron | 45.0% | |
| ATGCATTTGCATGTGGAAGG+TGG | - | chr3_4:67514606-67514625 | Msa0516080:intron | 45.0% | |
| TGCATTTGCATGTGGAAGGT+GGG | - | chr3_4:67514607-67514626 | Msa0516080:intron | 45.0% | |
| AAATGGAGGCTACACCTTGT+TGG | + | chr3_4:67514924-67514943 | None:intergenic | 45.0% | |
| AAGTGAGTTGCTCACTTTCG+AGG | + | chr3_4:67515003-67515022 | None:intergenic | 45.0% | |
| GTGACACTGGTAACTGGTTA+AGG | - | chr3_4:67515394-67515413 | Msa0516080:intron | 45.0% | |
| TCGTATGATACACAGATGCG+AGG | + | chr3_4:67515680-67515699 | None:intergenic | 45.0% | |
| !! | ACTCGAATTTTAGGGGGCTT+GGG | + | chr3_4:67516048-67516067 | None:intergenic | 45.0% |
| !! | TACTCGAATTTTAGGGGGCT+TGG | + | chr3_4:67516049-67516068 | None:intergenic | 45.0% |
| !! | TCATACAGTTGATGGGCTAC+TGG | - | chr3_4:67516164-67516183 | Msa0516080:intron | 45.0% |
| !! | AGCTCGTTTTGGTAAGCAAG+AGG | - | chr3_4:67516242-67516261 | Msa0516080:intron | 45.0% |
| CTTTACGGATTTCGTGAAGG+TGG | - | chr3_4:67516281-67516300 | Msa0516080:intron | 45.0% | |
| TAGTAAATCCTCGGAAGTGG+AGG | + | chr3_4:67516412-67516431 | None:intergenic | 45.0% | |
| CAGTAAATCAGAGCTTCTGG+AGG | + | chr3_4:67516694-67516713 | None:intergenic | 45.0% | |
| ACTATAAGACCCCAGGAGAT+AGG | + | chr3_4:67516781-67516800 | None:intergenic | 45.0% | |
| !!! | TGTTTTGGGGTAGCACCATA+TGG | - | chr3_4:67516894-67516913 | Msa0516080:intron | 45.0% |
| TGTCTTCGGCAGGACTTAAA+AGG | - | chr3_4:67516974-67516993 | Msa0516080:intron | 45.0% | |
| GTCTTCGGCAGGACTTAAAA+GGG | - | chr3_4:67516975-67516994 | Msa0516080:intron | 45.0% | |
| CCTAATCACATCATTGGGGA+AGG | + | chr3_4:67517041-67517060 | None:intergenic | 45.0% | |
| CCTTCCCCAATGATGTGATT+AGG | - | chr3_4:67517038-67517057 | Msa0516080:intron | 45.0% | |
| GCGTTTCACAGTTTCACATG+TGG | - | chr3_4:67517226-67517245 | Msa0516080:intron | 45.0% | |
| !! | CATGTGGTTTGGTGCTAAGT+TGG | - | chr3_4:67517242-67517261 | Msa0516080:intron | 45.0% |
| CAACTGCAGCTATTGCATCA+AGG | - | chr3_4:67517439-67517458 | Msa0516080:intron | 45.0% | |
| CTACGTGTGTGAGAGAGAAA+AGG | + | chr3_4:67517849-67517868 | None:intergenic | 45.0% | |
| !!! | CCTGTTTTGACACTCAACCA+AGG | + | chr3_4:67517910-67517929 | None:intergenic | 45.0% |
| CCTTGGTTGAGTGTCAAAAC+AGG | - | chr3_4:67517907-67517926 | Msa0516080:intron | 45.0% | |
| CGGAAACGTGAGATTGTTGT+AGG | + | chr3_4:67517953-67517972 | None:intergenic | 45.0% | |
| ACAATCTCACGTTTCCGCAA+TGG | - | chr3_4:67517956-67517975 | Msa0516080:intron | 45.0% | |
| TAGTGTCATCACCACCATTG+CGG | + | chr3_4:67517973-67517992 | None:intergenic | 45.0% | |
| ! | ATTGTGCTGCTGGAGTCAAA+TGG | - | chr3_4:67518038-67518057 | Msa0516080:intron | 45.0% |
| ! | AGGTTGGATTTCTAGACCTC+TGG | + | chr3_4:67518078-67518097 | None:intergenic | 45.0% |
| GGAGATTGGAACAACAACAG+AGG | - | chr3_4:67518120-67518139 | Msa0516080:CDS | 45.0% | |
| GATTGGAACAACAACAGAGG+GGG | - | chr3_4:67518123-67518142 | Msa0516080:CDS | 45.0% | |
| CTAGCAGCCTCATTAAAAGG+TGG | + | chr3_4:67518208-67518227 | None:intergenic | 45.0% | |
| GCTAGAAAAGCTGCTGGATT+TGG | - | chr3_4:67518223-67518242 | Msa0516080:intron | 45.0% | |
| GCAAGAGGTTCATACCATTC+GGG | + | chr3_4:67518250-67518269 | None:intergenic | 45.0% | |
| TTGGGCACTTTAACAGCAAG+AGG | + | chr3_4:67518265-67518284 | None:intergenic | 45.0% | |
| !! | ATATTAAATATATTTGTATA+CGG | - | chr3_4:67515705-67515724 | Msa0516080:CDS | 5.0% |
| !!! | TATTGAATTTTAAATATAAA+AGG | + | chr3_4:67518308-67518327 | None:intergenic | 5.0% |
| AGCTCACGAAGAAACCTTGG+TGG | - | chr3_4:67513718-67513737 | Msa0516080:three_prime_UTR | 50.0% | |
| AGGGTTGTATGGTTCAGCGA+TGG | + | chr3_4:67513831-67513850 | None:intergenic | 50.0% | |
| AGGTCGACAGAAGGGTTGTA+TGG | + | chr3_4:67513842-67513861 | None:intergenic | 50.0% | |
| GGATGTGAAGGTCGACAGAA+GGG | + | chr3_4:67513850-67513869 | None:intergenic | 50.0% | |
| ! | GAAAGAAAGTGCAGAGACGC+TGG | + | chr3_4:67513894-67513913 | None:intergenic | 50.0% |
| TGTCTTGCAGGTGAAGTTGG+TGG | - | chr3_4:67513973-67513992 | Msa0516080:CDS | 50.0% | |
| ! | ATGCCCAAGTTGGGTAAAGC+AGG | - | chr3_4:67514007-67514026 | Msa0516080:CDS | 50.0% |
| GCTTCCTGCTTTACCCAACT+TGG | + | chr3_4:67514014-67514033 | None:intergenic | 50.0% | |
| AAGCAGGAAGCTTGCAAAGC+AGG | - | chr3_4:67514023-67514042 | Msa0516080:CDS | 50.0% | |
| AGCAGGAAGCTTGCAAAGCA+GGG | - | chr3_4:67514024-67514043 | Msa0516080:CDS | 50.0% | |
| GTTGGGCCATTGATCTTTCG+TGG | - | chr3_4:67514080-67514099 | Msa0516080:CDS | 50.0% | |
| ! | AATCTCGGGTTCTAGCTAGC+AGG | + | chr3_4:67514245-67514264 | None:intergenic | 50.0% |
| TCGCACACTGCAGAGAATCT+CGG | + | chr3_4:67514260-67514279 | None:intergenic | 50.0% | |
| GTTGCTCACTTTCGAGGAAC+CGG | + | chr3_4:67514997-67515016 | None:intergenic | 50.0% | |
| !! | CGCTAGTTCTGCTCACAACT+TGG | + | chr3_4:67515193-67515212 | None:intergenic | 50.0% |
| ACCTTGCAGAGACAGAGAAG+AGG | + | chr3_4:67515962-67515981 | None:intergenic | 50.0% | |
| TGAAGGTGGCACAGGATGAA+GGG | - | chr3_4:67516295-67516314 | Msa0516080:intron | 50.0% | |
| TCTTCTTGCTGCACGACTTG+AGG | - | chr3_4:67516329-67516348 | Msa0516080:intron | 50.0% | |
| TAAATCCTCGGAAGTGGAGG+TGG | + | chr3_4:67516409-67516428 | None:intergenic | 50.0% | |
| TAGGAACTCTTGTCTTCGGC+AGG | - | chr3_4:67516964-67516983 | Msa0516080:intron | 50.0% | |
| ! | TGGCTGGAGCTTTATAGCAC+TGG | + | chr3_4:67517303-67517322 | None:intergenic | 50.0% |
| CTCCAGCCATGACATGATCT+GGG | - | chr3_4:67517314-67517333 | Msa0516080:intron | 50.0% | |
| ACTCCTCCCAGATCATGTCA+TGG | + | chr3_4:67517323-67517342 | None:intergenic | 50.0% | |
| TGACATGATCTGGGAGGAGT+TGG | - | chr3_4:67517323-67517342 | Msa0516080:intron | 50.0% | |
| !! | GGGAGGAGTTGGCTTTATTG+TGG | - | chr3_4:67517334-67517353 | Msa0516080:intron | 50.0% |
| TGAGTGTCAAAACAGGCCAG+AGG | - | chr3_4:67517914-67517933 | Msa0516080:intron | 50.0% | |
| ATCTCACGTTTCCGCAATGG+TGG | - | chr3_4:67517959-67517978 | Msa0516080:intron | 50.0% | |
| CTGCTGGAGTCAAATGGTTC+AGG | - | chr3_4:67518044-67518063 | Msa0516080:intron | 50.0% | |
| GGTTCAGGTATCTATGCCAG+AGG | - | chr3_4:67518059-67518078 | Msa0516080:CDS | 50.0% | |
| GGGAGCTCACGAAGAAACCT+TGG | - | chr3_4:67513715-67513734 | Msa0516080:three_prime_UTR | 55.0% | |
| GGTCGGCGGTGTTCAAAACT+CGG | + | chr3_4:67513754-67513773 | None:intergenic | 55.0% | |
| GGGATGTGAAGGTCGACAGA+AGG | + | chr3_4:67513851-67513870 | None:intergenic | 55.0% | |
| TCCGAGTCTCATGCCCAAGT+TGG | - | chr3_4:67513997-67514016 | Msa0516080:CDS | 55.0% | |
| CCCAACTTGGGCATGAGACT+CGG | + | chr3_4:67514001-67514020 | None:intergenic | 55.0% | |
| CCGAGTCTCATGCCCAAGTT+GGG | - | chr3_4:67513998-67514017 | Msa0516080:CDS | 55.0% | |
| CGCACACTGCAGAGAATCTC+GGG | + | chr3_4:67514259-67514278 | None:intergenic | 55.0% | |
| ATGCAAATGCATGTGCCGCG+AGG | + | chr3_4:67514598-67514617 | None:intergenic | 55.0% | |
| GCGGCACATGCATTTGCATG+TGG | - | chr3_4:67514599-67514618 | Msa0516080:intron | 55.0% | |
| GCCTCTTCTCTGTCTCTGCA+AGG | - | chr3_4:67515958-67515977 | Msa0516080:intron | 55.0% | |
| ! | GGGCTACTGGCCTGCTTTAT+TGG | - | chr3_4:67516177-67516196 | Msa0516080:intron | 55.0% |
| GGATTTCGTGAAGGTGGCAC+AGG | - | chr3_4:67516287-67516306 | Msa0516080:intron | 55.0% | |
| GTGAAGGTGGCACAGGATGA+AGG | - | chr3_4:67516294-67516313 | Msa0516080:intron | 55.0% | |
| !! | GGAGCATTACCGGCTCATGA+CGG | - | chr3_4:67516369-67516388 | Msa0516080:intron | 55.0% |
| !! | TACCGGCTCATGACGGTCTT+TGG | - | chr3_4:67516376-67516395 | Msa0516080:intron | 55.0% |
| ! | ACCGGCTCATGACGGTCTTT+GGG | - | chr3_4:67516377-67516396 | Msa0516080:intron | 55.0% |
| TCCCAAAGACCGTCATGAGC+CGG | + | chr3_4:67516381-67516400 | None:intergenic | 55.0% | |
| TTTGGGAGGTAAGGTGGGAG+TGG | - | chr3_4:67516639-67516658 | Msa0516080:intron | 55.0% | |
| GCTCCAGCCATGACATGATC+TGG | - | chr3_4:67517313-67517332 | Msa0516080:intron | 55.0% | |
| CTCCCAGATCATGTCATGGC+TGG | + | chr3_4:67517319-67517338 | None:intergenic | 55.0% | |
| CAGCCATGACATGATCTGGG+AGG | - | chr3_4:67517317-67517336 | Msa0516080:intron | 55.0% | |
| AGGCAGCACATCAAGTCCTC+TGG | + | chr3_4:67517933-67517952 | None:intergenic | 55.0% | |
| GAGGCTGCTAGAAAAGCTGC+TGG | - | chr3_4:67518217-67518236 | Msa0516080:intron | 55.0% | |
| ! | CTGCTGGATTTGGTCCCGAA+TGG | - | chr3_4:67518233-67518252 | Msa0516080:intron | 55.0% |
| TCGCGCCTTCTCGAATGGGT+CGG | + | chr3_4:67513771-67513790 | None:intergenic | 60.0% | |
| CGAGTCGCGCCTTCTCGAAT+GGG | + | chr3_4:67513775-67513794 | None:intergenic | 60.0% | |
| ! | CCATTCGAGAAGGCGCGACT+CGG | - | chr3_4:67513773-67513792 | Msa0516080:intron | 60.0% |
| TCGGCGACTCAGTCGCTTCA+CGG | - | chr3_4:67513792-67513811 | Msa0516080:intron | 60.0% | |
| AGAGACGCTGGAGAGCCTTG+CGG | + | chr3_4:67513882-67513901 | None:intergenic | 60.0% | |
| GCTGCACGACTTGAGGAGCT+AGG | - | chr3_4:67516336-67516355 | Msa0516080:intron | 60.0% | |
| TTCTGCCACCTCCACTTCCG+AGG | - | chr3_4:67516401-67516420 | Msa0516080:intron | 60.0% | |
| !! | TCGGAGCGCTGCTTCCACCA+AGG | + | chr3_4:67513735-67513754 | None:intergenic | 65.0% |
| CACCGCCGACCCATTCGAGA+AGG | - | chr3_4:67513763-67513782 | Msa0516080:three_prime_UTR | 65.0% | |
| CGCCTTCTCGAATGGGTCGG+CGG | + | chr3_4:67513768-67513787 | None:intergenic | 65.0% | |
| CCGAGTCGCGCCTTCTCGAA+TGG | + | chr3_4:67513776-67513795 | None:intergenic | 65.0% | |
| GCGACTCAGTCGCTTCACGG+TGG | - | chr3_4:67513795-67513814 | Msa0516080:intron | 65.0% | |
| GTCGCTTCACGGTGGCTCGA+TGG | - | chr3_4:67513803-67513822 | Msa0516080:intron | 65.0% | |
| AGACGCTGGAGAGCCTTGCG+GGG | + | chr3_4:67513880-67513899 | None:intergenic | 65.0% | |
| GAGACGCTGGAGAGCCTTGC+GGG | + | chr3_4:67513881-67513900 | None:intergenic | 65.0% | |
| CGGGGCGATCGGGGATGTGA+AGG | + | chr3_4:67513862-67513881 | None:intergenic | 70.0% | |
| ACATCCCCGATCGCCCCGCA+AGG | - | chr3_4:67513864-67513883 | Msa0516080:CDS | 70.0% | |
| AGAGCCTTGCGGGGCGATCG+GGG | + | chr3_4:67513871-67513890 | None:intergenic | 70.0% | |
| GAGAGCCTTGCGGGGCGATC+GGG | + | chr3_4:67513872-67513891 | None:intergenic | 70.0% | |
| GGAGAGCCTTGCGGGGCGAT+CGG | + | chr3_4:67513873-67513892 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 67513678 | 67518471 | 67513678 | ID=Msa0516080;Name=Msa0516080 |
| chr3_4 | mRNA | 67513678 | 67518471 | 67513678 | ID=Msa0516080-mRNA-1;Parent=Msa0516080;Name=Msa0516080-mRNA-1;_AED=0.05;_eAED=0.05;_QI=35|1|1|1|0.75|0.8|5|151|298 |
| chr3_4 | exon | 67513678 | 67513785 | 67513678 | ID=Msa0516080-mRNA-1:exon:17617;Parent=Msa0516080-mRNA-1 |
| chr3_4 | exon | 67513815 | 67514220 | 67513815 | ID=Msa0516080-mRNA-1:exon:17616;Parent=Msa0516080-mRNA-1 |
| chr3_4 | exon | 67515685 | 67515915 | 67515685 | ID=Msa0516080-mRNA-1:exon:17615;Parent=Msa0516080-mRNA-1 |
| chr3_4 | exon | 67518047 | 67518166 | 67518047 | ID=Msa0516080-mRNA-1:exon:17614;Parent=Msa0516080-mRNA-1 |
| chr3_4 | exon | 67518254 | 67518471 | 67518254 | ID=Msa0516080-mRNA-1:exon:17613;Parent=Msa0516080-mRNA-1 |
| chr3_4 | five_prime_UTR | 67518437 | 67518471 | 67518437 | ID=Msa0516080-mRNA-1:five_prime_utr;Parent=Msa0516080-mRNA-1 |
| chr3_4 | CDS | 67518254 | 67518436 | 67518254 | ID=Msa0516080-mRNA-1:cds;Parent=Msa0516080-mRNA-1 |
| chr3_4 | CDS | 67518047 | 67518166 | 67518047 | ID=Msa0516080-mRNA-1:cds;Parent=Msa0516080-mRNA-1 |
| chr3_4 | CDS | 67515685 | 67515915 | 67515685 | ID=Msa0516080-mRNA-1:cds;Parent=Msa0516080-mRNA-1 |
| chr3_4 | CDS | 67513858 | 67514220 | 67513858 | ID=Msa0516080-mRNA-1:cds;Parent=Msa0516080-mRNA-1 |
| chr3_4 | three_prime_UTR | 67513815 | 67513857 | 67513815 | ID=Msa0516080-mRNA-1:three_prime_utr;Parent=Msa0516080-mRNA-1 |
| chr3_4 | three_prime_UTR | 67513678 | 67513785 | 67513678 | ID=Msa0516080-mRNA-1:three_prime_utr;Parent=Msa0516080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
