Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376240 | XP_003602216.2 | 96.980 | 298 | 9 | 0 | 1 | 298 | 1 | 298 | 0.0 | 591 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376240 | sp|P43935|Y077_HAEIN | 31.488 | 289 | 151 | 12 | 9 | 283 | 12 | 267 | 3.32e-24 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376240 | G7J6T5 | 96.980 | 298 | 9 | 0 | 1 | 298 | 1 | 298 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0376080 | Msa0376240 | 0.971362 | 4.803162e-133 | -8.615850e-47 |
| Msa0376240 | Msa0516080 | 0.979033 | 4.357653e-147 | -8.615850e-47 |
| Msa0295000 | Msa0376240 | 0.813723 | 2.216000e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376240 | MtrunA17_Chr3g0126561 | 96.980 | 298 | 9 | 0 | 1 | 298 | 1 | 298 | 0.0 | 591 |
| Msa0376240 | MtrunA17_Chr2g0325421 | 35.211 | 284 | 156 | 6 | 7 | 289 | 73 | 329 | 1.68e-45 | 157 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376240 | AT5G04520.1 | 77.133 | 293 | 62 | 2 | 6 | 298 | 4 | 291 | 1.06e-169 | 472 |
| Msa0376240 | AT1G06240.1 | 34.364 | 291 | 152 | 7 | 7 | 290 | 81 | 339 | 1.85e-43 | 153 |
Find 96 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCGGCTCATGACGGTCTT+TGG | 0.241495 | 3_1:-76286041 | Msa0376240:CDS |
| TTTCTAGCAGCCTCATTAAA+AGG | 0.268264 | 3_1:+76284209 | None:intergenic |
| GAGGAGCTAGGTTCTTATTA+TGG | 0.271719 | 3_1:-76286069 | Msa0376240:CDS |
| GCACAATGTGTAATTTCTTC+TGG | 0.281336 | 3_1:+76284395 | None:intergenic |
| GAACATTGTTCTTAGAATTT+CGG | 0.286903 | 3_1:-76283979 | Msa0376240:three_prime_UTR |
| GAGAGCCTTGCGGGGCGATC+GGG | 0.312254 | 3_1:+76288547 | None:intergenic |
| GAGACGCTGGAGAGCCTTGC+GGG | 0.312985 | 3_1:+76288538 | None:intergenic |
| GCTAGAAAAGCTGCTGGATT+TGG | 0.337986 | 3_1:-76284194 | Msa0376240:CDS |
| TTCTTATTATGGAGCATTAC+CGG | 0.338235 | 3_1:-76286058 | Msa0376240:CDS |
| ACCGGCTCATGACGGTCTTT+GGG | 0.341500 | 3_1:-76286040 | Msa0376240:CDS |
| GAAATTTGTGCAGTGGAGAT+TGG | 0.366418 | 3_1:-76284311 | Msa0376240:CDS |
| CAGGATATAATAGCTCGTTT+TGG | 0.377718 | 3_1:-76286186 | Msa0376240:CDS |
| CGATTAAAACATCAAATATT+CGG | 0.381140 | 3_1:+76284020 | None:intergenic |
| CGGAAACGTGAGATTGTTGT+AGG | 0.390181 | 3_1:+76284467 | None:intergenic |
| CAAAGTTTCATGCAGTAGTA+AGG | 0.400207 | 3_1:-76284259 | Msa0376240:CDS |
| CCGAGTCGCGCCTTCTCGAA+TGG | 0.413558 | 3_1:+76288643 | None:intergenic |
| GCTTCCTGCTTTACCCAACT+TGG | 0.414688 | 3_1:+76288405 | None:intergenic |
| AGCAAGAGGTTCATACCATT+CGG | 0.420002 | 3_1:+76284169 | None:intergenic |
| AATGCCTAGAGAATTCTTTA+CGG | 0.420102 | 3_1:-76286151 | Msa0376240:CDS |
| GGAGAGCCTTGCGGGGCGAT+CGG | 0.426997 | 3_1:+76288546 | None:intergenic |
| TAAAACTGTTATTATGCATT+GGG | 0.429128 | 3_1:+76284137 | None:intergenic |
| CAAATTTCTTGATCTGAGGT+TGG | 0.437247 | 3_1:+76284326 | None:intergenic |
| CTGCTGGAGTCAAATGGTTC+AGG | 0.438600 | 3_1:-76284373 | Msa0376240:CDS |
| AGGTTGGATTTCTAGACCTC+TGG | 0.439745 | 3_1:+76284342 | None:intergenic |
| TCTTGCTCATATTGAGAGTT+GGG | 0.441722 | 3_1:-76288353 | Msa0376240:CDS |
| AAGCAGGAAGCTTGCAAAGC+AGG | 0.447695 | 3_1:-76288393 | Msa0376240:CDS |
| CGAGTCGCGCCTTCTCGAAT+GGG | 0.449213 | 3_1:+76288644 | None:intergenic |
| CTAAAACTGTTATTATGCAT+TGG | 0.466542 | 3_1:+76284136 | None:intergenic |
| GAAATTACACATTGTGCTGC+TGG | 0.472613 | 3_1:-76284389 | Msa0376240:CDS |
| GTGAAGGTGGCACAGGATGA+AGG | 0.473724 | 3_1:-76286123 | Msa0376240:CDS |
| GTCTTGCTCATATTGAGAGT+TGG | 0.478918 | 3_1:-76288354 | Msa0376240:CDS |
| GTTGGGCCATTGATCTTTCG+TGG | 0.480220 | 3_1:-76288336 | Msa0376240:CDS |
| GCAAGAGGTTCATACCATTC+GGG | 0.486451 | 3_1:+76284170 | None:intergenic |
| TCGGCGACTCAGTCGCTTCA+CGG | 0.490702 | 3_1:-76288624 | Msa0376240:CDS |
| TGATAGTAAATCCTCGGAAG+TGG | 0.492180 | 3_1:+76286005 | None:intergenic |
| CCCAACTTGGGCATGAGACT+CGG | 0.496986 | 3_1:+76288418 | None:intergenic |
| CCGAGTCTCATGCCCAAGTT+GGG | 0.498610 | 3_1:-76288418 | Msa0376240:CDS |
| TGATGTCTTGCAGGTGAAGT+TGG | 0.504862 | 3_1:-76288446 | Msa0376240:intron |
| TCTTCTTGCTGCACGACTTG+AGG | 0.515476 | 3_1:-76286088 | Msa0376240:CDS |
| TCCGAGTCTCATGCCCAAGT+TGG | 0.516672 | 3_1:-76288419 | Msa0376240:CDS |
| GGATTTCGTGAAGGTGGCAC+AGG | 0.519784 | 3_1:-76286130 | Msa0376240:CDS |
| GAGGCTGCTAGAAAAGCTGC+TGG | 0.521511 | 3_1:-76284200 | Msa0376240:CDS |
| CTTCCTGCTTTACCCAACTT+GGG | 0.523510 | 3_1:+76288406 | None:intergenic |
| AGAGCCTTGCGGGGCGATCG+GGG | 0.523900 | 3_1:+76288548 | None:intergenic |
| TGCACAAATTTCTTGATCTG+AGG | 0.526203 | 3_1:+76284322 | None:intergenic |
| CGGGGCGATCGGGGATGTGA+AGG | 0.526577 | 3_1:+76288557 | None:intergenic |
| TAAATCCTCGGAAGTGGAGG+TGG | 0.527096 | 3_1:+76286011 | None:intergenic |
| ATGCCCAAGTTGGGTAAAGC+AGG | 0.527357 | 3_1:-76288409 | Msa0376240:CDS |
| GTCGCTTCACGGTGGCTCGA+TGG | 0.530687 | 3_1:-76288613 | Msa0376240:CDS |
| AGGCAGCACATCAAGTCCTC+TGG | 0.536437 | 3_1:+76284487 | None:intergenic |
| TCCCAAAGACCGTCATGAGC+CGG | 0.536974 | 3_1:+76286039 | None:intergenic |
| AGGTCGACAGAAGGGTTGTA+TGG | 0.539367 | 3_1:+76288577 | None:intergenic |
| AGCAGGAAGCTTGCAAAGCA+GGG | 0.541244 | 3_1:-76288392 | Msa0376240:CDS |
| GCTGCACGACTTGAGGAGCT+AGG | 0.550537 | 3_1:-76286081 | Msa0376240:CDS |
| TTCTGCCACCTCCACTTCCG+AGG | 0.552266 | 3_1:-76286016 | Msa0376240:CDS |
| CCATTCGAGAAGGCGCGACT+CGG | 0.556818 | 3_1:-76288643 | Msa0376240:CDS |
| GAGTACCCACGAAAGATCAA+TGG | 0.559683 | 3_1:+76288330 | None:intergenic |
| GGGATGTGAAGGTCGACAGA+AGG | 0.561012 | 3_1:+76288568 | None:intergenic |
| TTGGGCCATTGATCTTTCGT+GGG | 0.566062 | 3_1:-76288335 | Msa0376240:intron |
| TTGGGCACTTTAACAGCAAG+AGG | 0.569293 | 3_1:+76284155 | None:intergenic |
| AAATCCGTAAAGAATTCTCT+AGG | 0.570912 | 3_1:+76286147 | None:intergenic |
| CGCCTTCTCGAATGGGTCGG+CGG | 0.572024 | 3_1:+76288651 | None:intergenic |
| TGTCTTGCAGGTGAAGTTGG+TGG | 0.573444 | 3_1:-76288443 | Msa0376240:intron |
| ACATCCCCGATCGCCCCGCA+AGG | 0.574608 | 3_1:-76288552 | Msa0376240:CDS |
| TGAAGGTGGCACAGGATGAA+GGG | 0.574869 | 3_1:-76286122 | Msa0376240:CDS |
| CTTTACGGATTTCGTGAAGG+TGG | 0.580964 | 3_1:-76286136 | Msa0376240:CDS |
| TCGCGCCTTCTCGAATGGGT+CGG | 0.583187 | 3_1:+76288648 | None:intergenic |
| GGGAGCTCACGAAGAAACCT+TGG | 0.584147 | 3_1:-76288701 | Msa0376240:CDS |
| GAGATTGGAACAACAACAGA+GGG | 0.585485 | 3_1:-76284296 | Msa0376240:CDS |
| CTGCTGGATTTGGTCCCGAA+TGG | 0.586642 | 3_1:-76284184 | Msa0376240:CDS |
| TAATCGTGATAGTAAATCCT+CGG | 0.588847 | 3_1:+76285999 | None:intergenic |
| CTAGCAGCCTCATTAAAAGG+TGG | 0.590935 | 3_1:+76284212 | None:intergenic |
| GGTCGGCGGTGTTCAAAACT+CGG | 0.593733 | 3_1:+76288665 | None:intergenic |
| ACAATCTCACGTTTCCGCAA+TGG | 0.595156 | 3_1:-76284461 | Msa0376240:CDS |
| GGATGTGAAGGTCGACAGAA+GGG | 0.595370 | 3_1:+76288569 | None:intergenic |
| CACCGCCGACCCATTCGAGA+AGG | 0.607577 | 3_1:-76288653 | Msa0376240:CDS |
| AGATCAAGAAATTTGTGCAG+TGG | 0.613201 | 3_1:-76284318 | Msa0376240:CDS |
| AGAGACGCTGGAGAGCCTTG+CGG | 0.613279 | 3_1:+76288537 | None:intergenic |
| ATTCTTTACGGATTTCGTGA+AGG | 0.620123 | 3_1:-76286139 | Msa0376240:CDS |
| TAGTAAATCCTCGGAAGTGG+AGG | 0.621594 | 3_1:+76286008 | None:intergenic |
| ATCTCACGTTTCCGCAATGG+TGG | 0.621599 | 3_1:-76284458 | Msa0376240:CDS |
| AGCTCACGAAGAAACCTTGG+TGG | 0.624811 | 3_1:-76288698 | Msa0376240:CDS |
| AGACGCTGGAGAGCCTTGCG+GGG | 0.645434 | 3_1:+76288539 | None:intergenic |
| ATTGTGCTGCTGGAGTCAAA+TGG | 0.648838 | 3_1:-76284379 | Msa0376240:CDS |
| TCGGAGCGCTGCTTCCACCA+AGG | 0.652247 | 3_1:+76288684 | None:intergenic |
| AGGGTTGTATGGTTCAGCGA+TGG | 0.654997 | 3_1:+76288588 | None:intergenic |
| GTAGTAAGGACATGTTTCAG+AGG | 0.667960 | 3_1:-76284245 | Msa0376240:CDS |
| TAGTGTCATCACCACCATTG+CGG | 0.670205 | 3_1:+76284447 | None:intergenic |
| GGAGCATTACCGGCTCATGA+CGG | 0.674476 | 3_1:-76286048 | Msa0376240:CDS |
| GGTTCAGGTATCTATGCCAG+AGG | 0.683892 | 3_1:-76284358 | Msa0376240:CDS |
| AGTTGAACATTGTGTCCATG+AGG | 0.684180 | 3_1:-76285974 | Msa0376240:intron |
| GATTGGAACAACAACAGAGG+GGG | 0.690681 | 3_1:-76284294 | Msa0376240:CDS |
| TGAGTGTCAAAACAGGCCAG+AGG | 0.714367 | 3_1:-76284503 | Msa0376240:intron |
| GGAGATTGGAACAACAACAG+AGG | 0.721744 | 3_1:-76284297 | Msa0376240:CDS |
| GCGACTCAGTCGCTTCACGG+TGG | 0.729190 | 3_1:-76288621 | Msa0376240:CDS |
| AGATTGGAACAACAACAGAG+GGG | 0.798618 | 3_1:-76284295 | Msa0376240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTAGTATAATTTAAAAT+CGG | - | chr3_1:76284454-76284473 | Msa0376240:CDS | 10.0% |
| !!! | TTAAAAACCAATAAATTTTA+TGG | - | chr3_1:76284682-76284701 | Msa0376240:intron | 10.0% |
| !! | AAAATAAAAAATCTTCAATA+TGG | + | chr3_1:76284735-76284754 | None:intergenic | 10.0% |
| !!! | ATTTAAAATAAGTTTTGTTA+AGG | - | chr3_1:76284807-76284826 | Msa0376240:intron | 10.0% |
| !!! | TTTAAAATAAGTTTTGTTAA+GGG | - | chr3_1:76284808-76284827 | Msa0376240:intron | 10.0% |
| !!! | ATTATTTTTCTGTTAAAAAA+TGG | + | chr3_1:76285229-76285248 | None:intergenic | 10.0% |
| !! | TAAATTTAAAGATATTGATA+TGG | + | chr3_1:76285931-76285950 | None:intergenic | 10.0% |
| !! | CTTCAAAAAAAAAAAAAAAA+CGG | + | chr3_1:76288633-76288652 | None:intergenic | 10.0% |
| !! | AACATATTTATAAAAAGAAA+CGG | + | chr3_1:76288664-76288683 | None:intergenic | 10.0% |
| !!! | ATTTATTGGTTTTTAATAGT+GGG | + | chr3_1:76284678-76284697 | None:intergenic | 15.0% |
| !!! | AATTTATTGGTTTTTAATAG+TGG | + | chr3_1:76284679-76284698 | None:intergenic | 15.0% |
| !! | AAGAATTCCATAAAATTTAT+TGG | + | chr3_1:76284692-76284711 | None:intergenic | 15.0% |
| !! | AAGTTAAGAACTATTATAAT+TGG | + | chr3_1:76285055-76285074 | None:intergenic | 15.0% |
| !!! | TAGAAAGCTTTTTTTAAATT+GGG | + | chr3_1:76285441-76285460 | None:intergenic | 15.0% |
| !!! | ATAGAAAGCTTTTTTTAAAT+TGG | + | chr3_1:76285442-76285461 | None:intergenic | 15.0% |
| !!! | ACAATAATGTATTTTTTACA+TGG | - | chr3_1:76285732-76285751 | Msa0376240:intron | 15.0% |
| !! | TTGTTAAACTAAAATTTAGT+TGG | - | chr3_1:76286378-76286397 | Msa0376240:intron | 15.0% |
| !!! | TATGATTTATGGTATTTTTT+TGG | - | chr3_1:76286909-76286928 | Msa0376240:intron | 15.0% |
| !!! | ATGATTTATGGTATTTTTTT+GGG | - | chr3_1:76286910-76286929 | Msa0376240:intron | 15.0% |
| !!! | AATATCAGAAATTTTGAATT+AGG | - | chr3_1:76287233-76287252 | Msa0376240:intron | 15.0% |
| !! | AGTATAACTATTGAATTAAA+AGG | - | chr3_1:76287561-76287580 | Msa0376240:intron | 15.0% |
| !! | GTATAACTATTGAATTAAAA+GGG | - | chr3_1:76287562-76287581 | Msa0376240:intron | 15.0% |
| !!! | AAATCGATTTATTGTTTATT+AGG | - | chr3_1:76287955-76287974 | Msa0376240:intron | 15.0% |
| !!! | CGTTTTTTTTTTTTTTTTGA+AGG | - | chr3_1:76288631-76288650 | Msa0376240:CDS | 15.0% |
| !! | TGAAAAAACAGAAAAATATC+TGG | - | chr3_1:76284590-76284609 | Msa0376240:intron | 20.0% |
| !! | GAAAAAACAGAAAAATATCT+GGG | - | chr3_1:76284591-76284610 | Msa0376240:intron | 20.0% |
| !! | ATTAGAGTAATAAGAAAGAT+TGG | - | chr3_1:76285023-76285042 | Msa0376240:intron | 20.0% |
| !! | TTAGAGTAATAAGAAAGATT+GGG | - | chr3_1:76285024-76285043 | Msa0376240:intron | 20.0% |
| !!! | ATTTTTCTGTTAAAAAATGG+AGG | + | chr3_1:76285226-76285245 | None:intergenic | 20.0% |
| !! | AGATCAAAGAATTAATAAAG+GGG | + | chr3_1:76285510-76285529 | None:intergenic | 20.0% |
| !! | CAGATCAAAGAATTAATAAA+GGG | + | chr3_1:76285511-76285530 | None:intergenic | 20.0% |
| !!! | TTTATCAGCAAATTTTGTTT+TGG | - | chr3_1:76287167-76287186 | Msa0376240:intron | 20.0% |
| !!! | TTATCAGCAAATTTTGTTTT+GGG | - | chr3_1:76287168-76287187 | Msa0376240:intron | 20.0% |
| !! | GAAAAAAAATACATAACCAA+AGG | + | chr3_1:76287360-76287379 | None:intergenic | 20.0% |
| !!! | ATTAACCTTTTGCAAATATA+AGG | + | chr3_1:76287668-76287687 | None:intergenic | 20.0% |
| !! | TAAAATGGAGTAAACATTAA+CGG | - | chr3_1:76287986-76288005 | Msa0376240:intron | 20.0% |
| !! | TTAAATGGAAATATATTAGC+CGG | + | chr3_1:76288023-76288042 | None:intergenic | 20.0% |
| !! | GGCAATAATACTAAATTAAA+TGG | + | chr3_1:76288038-76288057 | None:intergenic | 20.0% |
| !! | AATTTAGTATTATTGCCATT+AGG | - | chr3_1:76288041-76288060 | Msa0376240:intron | 20.0% |
| !! | AGACTAAAATTATCTTAGAA+TGG | - | chr3_1:76288100-76288119 | Msa0376240:intron | 20.0% |
| !! | GACTAAAATTATCTTAGAAT+GGG | - | chr3_1:76288101-76288120 | Msa0376240:intron | 20.0% |
| !! | TAAAACTGTTATTATGCATT+GGG | + | chr3_1:76288571-76288590 | None:intergenic | 20.0% |
| !! | CGATTAAAACATCAAATATT+CGG | + | chr3_1:76288688-76288707 | None:intergenic | 20.0% |
| !!! | ATTTTTCAACATATCGAGAT+GGG | - | chr3_1:76283984-76284003 | Msa0376240:three_prime_UTR | 25.0% |
| ! | TTAGAATATAAATGTGGGAA+CGG | + | chr3_1:76284623-76284642 | None:intergenic | 25.0% |
| ! | TAGAGTAATAAGAAAGATTG+GGG | - | chr3_1:76285025-76285044 | Msa0376240:intron | 25.0% |
| !! | TGTTTTATCCTATGAACTAA+CGG | - | chr3_1:76285102-76285121 | Msa0376240:intron | 25.0% |
| !! | CATTTGAGATACAATTTGAA+AGG | - | chr3_1:76285257-76285276 | Msa0376240:intron | 25.0% |
| ! | ATCAACCATTAATTAATTGC+AGG | - | chr3_1:76285331-76285350 | Msa0376240:intron | 25.0% |
| ! | ATGTACCTGCAATTAATTAA+TGG | + | chr3_1:76285339-76285358 | None:intergenic | 25.0% |
| ! | CCAGATCAAAGAATTAATAA+AGG | + | chr3_1:76285512-76285531 | None:intergenic | 25.0% |
| ! | CCTTTATTAATTCTTTGATC+TGG | - | chr3_1:76285509-76285528 | Msa0376240:intron | 25.0% |
| ! | ACAAAAAATAGAGAGACATA+TGG | - | chr3_1:76285536-76285555 | Msa0376240:intron | 25.0% |
| !!! | TACATGTTCTATTTTGATCA+TGG | - | chr3_1:76285579-76285598 | Msa0376240:intron | 25.0% |
| ! | AATACATCTGACATATTTAG+AGG | - | chr3_1:76285708-76285727 | Msa0376240:intron | 25.0% |
| ! | ATACATCTGACATATTTAGA+GGG | - | chr3_1:76285709-76285728 | Msa0376240:intron | 25.0% |
| !!! | ATTATTTTGTACGAAGAAGA+AGG | + | chr3_1:76286056-76286075 | None:intergenic | 25.0% |
| ! | TAAACATAAATCTTCTTTGG+CGG | - | chr3_1:76286208-76286227 | Msa0376240:intron | 25.0% |
| !! | TGCAATTTACTCGAATTTTA+GGG | + | chr3_1:76286344-76286363 | None:intergenic | 25.0% |
| !!! | TAGTTTTTTCATACAGTTGA+TGG | - | chr3_1:76286444-76286463 | Msa0376240:intron | 25.0% |
| !!! | AGTTTTTTCATACAGTTGAT+GGG | - | chr3_1:76286445-76286464 | Msa0376240:intron | 25.0% |
| !! | AATACTTTTACCAATAAAGC+AGG | + | chr3_1:76286478-76286497 | None:intergenic | 25.0% |
| ! | AAACCATAAACAACCAAAAA+TGG | + | chr3_1:76286787-76286806 | None:intergenic | 25.0% |
| !!! | ATTTATGGTATTTTTTTGGG+AGG | - | chr3_1:76286913-76286932 | Msa0376240:intron | 25.0% |
| !!! | TATCAGCAAATTTTGTTTTG+GGG | - | chr3_1:76287169-76287188 | Msa0376240:intron | 25.0% |
| ! | AAACATTAAAGAACTCCATA+TGG | + | chr3_1:76287200-76287219 | None:intergenic | 25.0% |
| !! | TGATTTTTATCTAACAGTGT+AGG | + | chr3_1:76287384-76287403 | None:intergenic | 25.0% |
| ! | GAAACAATCAAGTGAAAATA+AGG | - | chr3_1:76287417-76287436 | Msa0376240:intron | 25.0% |
| !!! | TTTAGCCTTATATTTGCAAA+AGG | - | chr3_1:76287660-76287679 | Msa0376240:intron | 25.0% |
| ! | AATGATGTAATCATGCAATA+AGG | + | chr3_1:76287822-76287841 | None:intergenic | 25.0% |
| ! | TATTAGGTCAACAACTAAAA+TGG | - | chr3_1:76287971-76287990 | Msa0376240:intron | 25.0% |
| ! | AAATATATTAGCCGGAAAAA+GGG | + | chr3_1:76288015-76288034 | None:intergenic | 25.0% |
| !!! | TCATTAAAAGGTGGTTTTAA+GGG | + | chr3_1:76288487-76288506 | None:intergenic | 25.0% |
| ! | CTAAAACTGTTATTATGCAT+TGG | + | chr3_1:76288572-76288591 | None:intergenic | 25.0% |
| !! | CAATGCATAATAACAGTTTT+AGG | - | chr3_1:76288570-76288589 | Msa0376240:CDS | 25.0% |
| ! | GAACATTGTTCTTAGAATTT+CGG | - | chr3_1:76288726-76288745 | Msa0376240:five_prime_UTR | 25.0% |
| !! | CATTTTTCAACATATCGAGA+TGG | - | chr3_1:76283983-76284002 | Msa0376240:three_prime_UTR | 30.0% |
| !! | GAACACAAGAAGAGTATTAT+TGG | + | chr3_1:76284205-76284224 | None:intergenic | 30.0% |
| AAATTCCTCACTGACATAAA+TGG | - | chr3_1:76284229-76284248 | Msa0376240:CDS | 30.0% | |
| CTACATTATTCAGATTTCAC+AGG | + | chr3_1:76284441-76284460 | None:intergenic | 30.0% | |
| GGCTGTTAGAATATAAATGT+GGG | + | chr3_1:76284628-76284647 | None:intergenic | 30.0% | |
| AGGCTGTTAGAATATAAATG+TGG | + | chr3_1:76284629-76284648 | None:intergenic | 30.0% | |
| AAATGTGCAGTTTACATACA+TGG | + | chr3_1:76284772-76284791 | None:intergenic | 30.0% | |
| TTTAACCTCTAACAATCATG+TGG | - | chr3_1:76284922-76284941 | Msa0376240:intron | 30.0% | |
| TTAACCTCTAACAATCATGT+GGG | - | chr3_1:76284923-76284942 | Msa0376240:intron | 30.0% | |
| !! | AACTTTTTCTTGCCATTCAA+CGG | - | chr3_1:76285070-76285089 | Msa0376240:intron | 30.0% |
| ! | TAAGAGCACATTATGCATAT+TGG | + | chr3_1:76285180-76285199 | None:intergenic | 30.0% |
| AGATACAATTTGAAAGGATC+CGG | - | chr3_1:76285263-76285282 | Msa0376240:intron | 30.0% | |
| GTGTAAAGTGAGAAAATCAA+GGG | + | chr3_1:76285394-76285413 | None:intergenic | 30.0% | |
| AGTGTAAAGTGAGAAAATCA+AGG | + | chr3_1:76285395-76285414 | None:intergenic | 30.0% | |
| !!! | AGCTTTTTTTAAATTGGGCA+AGG | + | chr3_1:76285436-76285455 | None:intergenic | 30.0% |
| !!! | ATGTTCTATTTTGATCATGG+TGG | - | chr3_1:76285582-76285601 | Msa0376240:intron | 30.0% |
| TAAAGTGATAAAACCCATGA+AGG | + | chr3_1:76286019-76286038 | None:intergenic | 30.0% | |
| GAGATAAGCTAAAAGCAAAT+GGG | + | chr3_1:76286106-76286125 | None:intergenic | 30.0% | |
| AGAGATAAGCTAAAAGCAAA+TGG | + | chr3_1:76286107-76286126 | None:intergenic | 30.0% | |
| GGCTAAACATAAATCTTCTT+TGG | - | chr3_1:76286205-76286224 | Msa0376240:intron | 30.0% | |
| CTTGATTTAGACTAGAAGAT+AGG | + | chr3_1:76286284-76286303 | None:intergenic | 30.0% | |
| ! | CAATTTACTCGAATTTTAGG+GGG | + | chr3_1:76286342-76286361 | None:intergenic | 30.0% |
| ! | GCAATTTACTCGAATTTTAG+GGG | + | chr3_1:76286343-76286362 | None:intergenic | 30.0% |
| ! | GTGCAATTTACTCGAATTTT+AGG | + | chr3_1:76286345-76286364 | None:intergenic | 30.0% |
| !! | TGCATTTGTTATCGTTTGTT+TGG | - | chr3_1:76286413-76286432 | Msa0376240:intron | 30.0% |
| GATGTATAATGAATTCTTGC+AGG | - | chr3_1:76286500-76286519 | Msa0376240:intron | 30.0% | |
| AATGCCTAGAGAATTCTTTA+CGG | - | chr3_1:76286554-76286573 | Msa0376240:intron | 30.0% | |
| AAATCCGTAAAGAATTCTCT+AGG | + | chr3_1:76286561-76286580 | None:intergenic | 30.0% | |
| ! | TTCTTATTATGGAGCATTAC+CGG | - | chr3_1:76286647-76286666 | Msa0376240:intron | 30.0% |
| TAATCGTGATAGTAAATCCT+CGG | + | chr3_1:76286709-76286728 | None:intergenic | 30.0% | |
| TAAACAACCAAAAATGGCAA+TGG | + | chr3_1:76286781-76286800 | None:intergenic | 30.0% | |
| !!! | TTGCCATTTTTGGTTGTTTA+TGG | - | chr3_1:76286781-76286800 | Msa0376240:intron | 30.0% |
| GCTTGTCAATGTATGATTTA+TGG | - | chr3_1:76286898-76286917 | Msa0376240:intron | 30.0% | |
| !! | GGTCTTATAGTTTCTAGTAT+TGG | - | chr3_1:76287078-76287097 | Msa0376240:intron | 30.0% |
| AGTTCTTTAATGTTTGTAGC+TGG | - | chr3_1:76287205-76287224 | Msa0376240:intron | 30.0% | |
| AAACACCTAATCACATCATT+GGG | + | chr3_1:76287334-76287353 | None:intergenic | 30.0% | |
| AAAACACCTAATCACATCAT+TGG | + | chr3_1:76287335-76287354 | None:intergenic | 30.0% | |
| ! | TGATTAGGTGTTTTATCCTT+TGG | - | chr3_1:76287341-76287360 | Msa0376240:intron | 30.0% |
| TTAGGTGATTAGGAAATCAT+TGG | + | chr3_1:76287704-76287723 | None:intergenic | 30.0% | |
| GAAATATATTAGCCGGAAAA+AGG | + | chr3_1:76288016-76288035 | None:intergenic | 30.0% | |
| ! | CTAAGAGATTTAAAGCCTAA+TGG | + | chr3_1:76288059-76288078 | None:intergenic | 30.0% |
| !! | CATTAGGCTTTAAATCTCTT+AGG | - | chr3_1:76288057-76288076 | Msa0376240:intron | 30.0% |
| GTAGTTACACAACATCAATT+TGG | - | chr3_1:76288153-76288172 | Msa0376240:intron | 30.0% | |
| !! | CTCATTAAAAGGTGGTTTTA+AGG | + | chr3_1:76288488-76288507 | None:intergenic | 30.0% |
| ! | CTTAAAACCACCTTTTAATG+AGG | - | chr3_1:76288486-76288505 | Msa0376240:intron | 30.0% |
| ATAAGCCATTTATGTCAGTG+AGG | + | chr3_1:76284237-76284256 | None:intergenic | 35.0% | |
| TCTTGCTCATATTGAGAGTT+GGG | - | chr3_1:76284352-76284371 | Msa0376240:CDS | 35.0% | |
| GTAGCATGTATAGATACACA+GGG | + | chr3_1:76284412-76284431 | None:intergenic | 35.0% | |
| AGTAGCATGTATAGATACAC+AGG | + | chr3_1:76284413-76284432 | None:intergenic | 35.0% | |
| GTAAACTGCACATTTCAATG+TGG | - | chr3_1:76284777-76284796 | Msa0376240:intron | 35.0% | |
| ATCGATACTTAAGCAGTTTC+GGG | + | chr3_1:76285138-76285157 | None:intergenic | 35.0% | |
| CATCGATACTTAAGCAGTTT+CGG | + | chr3_1:76285139-76285158 | None:intergenic | 35.0% | |
| TCTTAGATACACATCCAACA+AGG | - | chr3_1:76285195-76285214 | Msa0376240:intron | 35.0% | |
| TTACACTTTACTCGCTTTAG+AGG | - | chr3_1:76285408-76285427 | Msa0376240:intron | 35.0% | |
| ACTCTTTCGATTCAAGATGT+TGG | + | chr3_1:76285611-76285630 | None:intergenic | 35.0% | |
| TTTCTCTTCCTGAATAGACT+TGG | - | chr3_1:76285631-76285650 | Msa0376240:intron | 35.0% | |
| TTCTCTTCCTGAATAGACTT+GGG | - | chr3_1:76285632-76285651 | Msa0376240:intron | 35.0% | |
| GATCATAAGAATTGTGACAC+TGG | - | chr3_1:76285669-76285688 | Msa0376240:intron | 35.0% | |
| GAAGATCAAGACTTACGAAA+AGG | + | chr3_1:76285817-76285836 | None:intergenic | 35.0% | |
| ATACTATGTCATGTCGTAGT+AGG | - | chr3_1:76285905-76285924 | Msa0376240:intron | 35.0% | |
| ATATTTGTATACGGCCTTCA+TGG | - | chr3_1:76286002-76286021 | Msa0376240:CDS | 35.0% | |
| TATTTGTATACGGCCTTCAT+GGG | - | chr3_1:76286003-76286022 | Msa0376240:CDS | 35.0% | |
| !! | GGGTTTTATCACTTTATGTG+AGG | - | chr3_1:76286023-76286042 | Msa0376240:CDS | 35.0% |
| TTATCTCTGTGACTAAGCTA+TGG | - | chr3_1:76286119-76286138 | Msa0376240:CDS | 35.0% | |
| TATCTCTGTGACTAAGCTAT+GGG | - | chr3_1:76286120-76286139 | Msa0376240:CDS | 35.0% | |
| GAGATAAGCTAAAGGCAAAT+GGG | + | chr3_1:76286170-76286189 | None:intergenic | 35.0% | |
| AGAGATAAGCTAAAGGCAAA+TGG | + | chr3_1:76286171-76286190 | None:intergenic | 35.0% | |
| TAGTCACAGAGATAAGCTAA+AGG | + | chr3_1:76286114-76286133 | None:intergenic | 35.0% | |
| TTATCTCTGTGACTAAGCTA+TGG | - | chr3_1:76286119-76286138 | Msa0376240:CDS | 35.0% | |
| TATCTCTGTGACTAAGCTAT+GGG | - | chr3_1:76286120-76286139 | Msa0376240:CDS | 35.0% | |
| ! | CAGGATATAATAGCTCGTTT+TGG | - | chr3_1:76286519-76286538 | Msa0376240:intron | 35.0% |
| ATTCTTTACGGATTTCGTGA+AGG | - | chr3_1:76286566-76286585 | Msa0376240:intron | 35.0% | |
| AGTGATCTAGTTGTCTAATG+AGG | + | chr3_1:76286844-76286863 | None:intergenic | 35.0% | |
| !!! | TGGTATTTTTTTGGGAGGTA+AGG | - | chr3_1:76286918-76286937 | Msa0376240:intron | 35.0% |
| !!! | TATTTTTTTGGGAGGTAAGG+TGG | - | chr3_1:76286921-76286940 | Msa0376240:intron | 35.0% |
| !!! | ATTTTTTTGGGAGGTAAGGT+GGG | - | chr3_1:76286922-76286941 | Msa0376240:intron | 35.0% |
| TTTCAGTAAATCAGAGCTTC+TGG | + | chr3_1:76286985-76287004 | None:intergenic | 35.0% | |
| AAGAATTTGTCCTATCTCCT+GGG | - | chr3_1:76287056-76287075 | Msa0376240:intron | 35.0% | |
| GAATTAGGAACTCTTGTCTT+CGG | - | chr3_1:76287248-76287267 | Msa0376240:intron | 35.0% | |
| AACACCTAATCACATCATTG+GGG | + | chr3_1:76287333-76287352 | None:intergenic | 35.0% | |
| !!! | GCAGTTGTTTTTAGGTGATT+AGG | + | chr3_1:76287714-76287733 | None:intergenic | 35.0% |
| !!! | CAATAGCTGCAGTTGTTTTT+AGG | + | chr3_1:76287722-76287741 | None:intergenic | 35.0% |
| ATGCTCAAACTCATCAATTG+AGG | - | chr3_1:76287870-76287889 | Msa0376240:intron | 35.0% | |
| ! | ATTAACGGTTTCCCTTTTTC+CGG | - | chr3_1:76288001-76288020 | Msa0376240:intron | 35.0% |
| TTAATCTAAACTGTACCCCT+TGG | - | chr3_1:76288178-76288197 | Msa0376240:intron | 35.0% | |
| GCACAATGTGTAATTTCTTC+TGG | + | chr3_1:76288313-76288332 | None:intergenic | 35.0% | |
| ! | CAAATTTCTTGATCTGAGGT+TGG | + | chr3_1:76288382-76288401 | None:intergenic | 35.0% |
| TGCACAAATTTCTTGATCTG+AGG | + | chr3_1:76288386-76288405 | None:intergenic | 35.0% | |
| AGATCAAGAAATTTGTGCAG+TGG | - | chr3_1:76288387-76288406 | Msa0376240:CDS | 35.0% | |
| CAAAGTTTCATGCAGTAGTA+AGG | - | chr3_1:76288446-76288465 | Msa0376240:intron | 35.0% | |
| ! | TTTCTAGCAGCCTCATTAAA+AGG | + | chr3_1:76288499-76288518 | None:intergenic | 35.0% |
| !!! | GGCTTATTTTGATGTCTTGC+AGG | - | chr3_1:76284250-76284269 | Msa0376240:CDS | 40.0% |
| GTCTTGCTCATATTGAGAGT+TGG | - | chr3_1:76284351-76284370 | Msa0376240:CDS | 40.0% | |
| ! | ACGAGAAAGTGCAACTTAGT+TGG | - | chr3_1:76284506-76284525 | Msa0376240:intron | 40.0% |
| CTGCTCTCTCTACTAATATG+AGG | + | chr3_1:76284649-76284668 | None:intergenic | 40.0% | |
| CTCATATTAGTAGAGAGAGC+AGG | - | chr3_1:76284647-76284666 | Msa0376240:intron | 40.0% | |
| ATATTAGTAGAGAGAGCAGG+TGG | - | chr3_1:76284650-76284669 | Msa0376240:intron | 40.0% | |
| TATGTGCTACACAACAGCAA+TGG | - | chr3_1:76284832-76284851 | Msa0376240:intron | 40.0% | |
| GTTTAGTATTAAGAGCCTCG+CGG | - | chr3_1:76284868-76284887 | Msa0376240:intron | 40.0% | |
| ACATCCCACATGATTGTTAG+AGG | + | chr3_1:76284930-76284949 | None:intergenic | 40.0% | |
| ACAGAGTGAAAACCGTTGAA+TGG | + | chr3_1:76285085-76285104 | None:intergenic | 40.0% | |
| ! | ATCCTATGAACTAACGGACA+TGG | - | chr3_1:76285108-76285127 | Msa0376240:intron | 40.0% |
| ATCCATGTCCGTTAGTTCAT+AGG | + | chr3_1:76285113-76285132 | None:intergenic | 40.0% | |
| TCACAACTTGGTACAGAACA+AGG | + | chr3_1:76285469-76285488 | None:intergenic | 40.0% | |
| GCATAATCCCAAGTCTATTC+AGG | + | chr3_1:76285642-76285661 | None:intergenic | 40.0% | |
| GACTTGGGATTATGCTTTCT+TGG | - | chr3_1:76285647-76285666 | Msa0376240:intron | 40.0% | |
| AGAATTGTGACACTGGTAAC+TGG | - | chr3_1:76285676-76285695 | Msa0376240:intron | 40.0% | |
| GAGGAGCTAGGTTCTTATTA+TGG | - | chr3_1:76286636-76286655 | Msa0376240:intron | 40.0% | |
| TGATAGTAAATCCTCGGAAG+TGG | + | chr3_1:76286703-76286722 | None:intergenic | 40.0% | |
| AGTTGAACATTGTGTCCATG+AGG | - | chr3_1:76286731-76286750 | Msa0376240:intron | 40.0% | |
| CCAATGTAAGACATACCTCA+TGG | + | chr3_1:76286749-76286768 | None:intergenic | 40.0% | |
| CCATGAGGTATGTCTTACAT+TGG | - | chr3_1:76286746-76286765 | Msa0376240:intron | 40.0% | |
| CAAAAATGGCAATGGCAGAA+AGG | + | chr3_1:76286773-76286792 | None:intergenic | 40.0% | |
| !!! | CTTTCTGCCATTGCCATTTT+TGG | - | chr3_1:76286771-76286790 | Msa0376240:intron | 40.0% |
| !! | TGGAGTGCTTAAGCGATTTT+TGG | - | chr3_1:76286947-76286966 | Msa0376240:intron | 40.0% |
| !! | GGAGTGCTTAAGCGATTTTT+GGG | - | chr3_1:76286948-76286967 | Msa0376240:intron | 40.0% |
| ! | GAGTGCTTAAGCGATTTTTG+GGG | - | chr3_1:76286949-76286968 | Msa0376240:intron | 40.0% |
| CAAGAATTTGTCCTATCTCC+TGG | - | chr3_1:76287055-76287074 | Msa0376240:intron | 40.0% | |
| AGAATTTGTCCTATCTCCTG+GGG | - | chr3_1:76287057-76287076 | Msa0376240:intron | 40.0% | |
| ACTAGAAACTATAAGACCCC+AGG | + | chr3_1:76287076-76287095 | None:intergenic | 40.0% | |
| ! | TTGGTCAAGTCCTTTTCCTT+TGG | - | chr3_1:76287097-76287116 | Msa0376240:intron | 40.0% |
| CTTCAGTTCTCCAAAGGAAA+AGG | + | chr3_1:76287110-76287129 | None:intergenic | 40.0% | |
| AACTCTCTTCAGTTCTCCAA+AGG | + | chr3_1:76287116-76287135 | None:intergenic | 40.0% | |
| TTGGAGAACTGAAGAGAGTT+AGG | - | chr3_1:76287116-76287135 | Msa0376240:intron | 40.0% | |
| CTAATCACATCATTGGGGAA+GGG | + | chr3_1:76287328-76287347 | None:intergenic | 40.0% | |
| TCACAGTTTCACATGTGGTT+TGG | - | chr3_1:76287519-76287538 | Msa0376240:intron | 40.0% | |
| CTCAAACTCATCAATTGAGG+TGG | - | chr3_1:76287873-76287892 | Msa0376240:intron | 40.0% | |
| TACGTGTGTGAGAGAGAAAA+GGG | + | chr3_1:76288136-76288155 | None:intergenic | 40.0% | |
| !!! | TGTTTTGACACTCAACCAAG+GGG | + | chr3_1:76288196-76288215 | None:intergenic | 40.0% |
| !!! | CTGTTTTGACACTCAACCAA+GGG | + | chr3_1:76288197-76288216 | None:intergenic | 40.0% |
| GAAATTACACATTGTGCTGC+TGG | - | chr3_1:76288316-76288335 | Msa0376240:intron | 40.0% | |
| GAAATTTGTGCAGTGGAGAT+TGG | - | chr3_1:76288394-76288413 | Msa0376240:CDS | 40.0% | |
| GAGATTGGAACAACAACAGA+GGG | - | chr3_1:76288409-76288428 | Msa0376240:CDS | 40.0% | |
| AGATTGGAACAACAACAGAG+GGG | - | chr3_1:76288410-76288429 | Msa0376240:CDS | 40.0% | |
| GTAGTAAGGACATGTTTCAG+AGG | - | chr3_1:76288460-76288479 | Msa0376240:intron | 40.0% | |
| AGCAAGAGGTTCATACCATT+CGG | + | chr3_1:76288539-76288558 | None:intergenic | 40.0% | |
| TGATGTCTTGCAGGTGAAGT+TGG | - | chr3_1:76284259-76284278 | Msa0376240:CDS | 45.0% | |
| CTTCCTGCTTTACCCAACTT+GGG | + | chr3_1:76284302-76284321 | None:intergenic | 45.0% | |
| TTGGGCCATTGATCTTTCGT+GGG | - | chr3_1:76284370-76284389 | Msa0376240:CDS | 45.0% | |
| GAGTACCCACGAAAGATCAA+TGG | + | chr3_1:76284378-76284397 | None:intergenic | 45.0% | |
| TGTGCGAGTCTCTAACATCA+AGG | - | chr3_1:76284562-76284581 | Msa0376240:intron | 45.0% | |
| CACATGCATTTGCATGTGGA+AGG | - | chr3_1:76284891-76284910 | Msa0376240:intron | 45.0% | |
| ATGCATTTGCATGTGGAAGG+TGG | - | chr3_1:76284894-76284913 | Msa0376240:intron | 45.0% | |
| TGCATTTGCATGTGGAAGGT+GGG | - | chr3_1:76284895-76284914 | Msa0376240:intron | 45.0% | |
| AAATGGAGGCTACACCTTGT+TGG | + | chr3_1:76285212-76285231 | None:intergenic | 45.0% | |
| AAGTGAGTTGCTCACTTTCG+AGG | + | chr3_1:76285291-76285310 | None:intergenic | 45.0% | |
| GTGACACTGGTAACTGGTTA+AGG | - | chr3_1:76285682-76285701 | Msa0376240:intron | 45.0% | |
| TCGTATGATACACAGATGCG+AGG | + | chr3_1:76285968-76285987 | None:intergenic | 45.0% | |
| !! | ACTCGAATTTTAGGGGGCTT+GGG | + | chr3_1:76286336-76286355 | None:intergenic | 45.0% |
| !! | TACTCGAATTTTAGGGGGCT+TGG | + | chr3_1:76286337-76286356 | None:intergenic | 45.0% |
| !! | TCATACAGTTGATGGGCTAC+TGG | - | chr3_1:76286452-76286471 | Msa0376240:intron | 45.0% |
| !! | AGCTCGTTTTGGTAAGCAAG+AGG | - | chr3_1:76286530-76286549 | Msa0376240:intron | 45.0% |
| CTTTACGGATTTCGTGAAGG+TGG | - | chr3_1:76286569-76286588 | Msa0376240:intron | 45.0% | |
| TAGTAAATCCTCGGAAGTGG+AGG | + | chr3_1:76286700-76286719 | None:intergenic | 45.0% | |
| CAGTAAATCAGAGCTTCTGG+AGG | + | chr3_1:76286982-76287001 | None:intergenic | 45.0% | |
| ACTATAAGACCCCAGGAGAT+AGG | + | chr3_1:76287069-76287088 | None:intergenic | 45.0% | |
| !!! | TGTTTTGGGGTAGCACCATA+TGG | - | chr3_1:76287182-76287201 | Msa0376240:intron | 45.0% |
| TGTCTTCGGCAGGACTTAAA+AGG | - | chr3_1:76287262-76287281 | Msa0376240:intron | 45.0% | |
| GTCTTCGGCAGGACTTAAAA+GGG | - | chr3_1:76287263-76287282 | Msa0376240:intron | 45.0% | |
| CCTAATCACATCATTGGGGA+AGG | + | chr3_1:76287329-76287348 | None:intergenic | 45.0% | |
| CCTTCCCCAATGATGTGATT+AGG | - | chr3_1:76287326-76287345 | Msa0376240:intron | 45.0% | |
| GCGTTTCACAGTTTCACATG+TGG | - | chr3_1:76287514-76287533 | Msa0376240:intron | 45.0% | |
| !! | CATGTGGTTTGGTGCTAAGT+TGG | - | chr3_1:76287530-76287549 | Msa0376240:intron | 45.0% |
| CAACTGCAGCTATTGCATCA+AGG | - | chr3_1:76287727-76287746 | Msa0376240:intron | 45.0% | |
| CTACGTGTGTGAGAGAGAAA+AGG | + | chr3_1:76288137-76288156 | None:intergenic | 45.0% | |
| !!! | CCTGTTTTGACACTCAACCA+AGG | + | chr3_1:76288198-76288217 | None:intergenic | 45.0% |
| CCTTGGTTGAGTGTCAAAAC+AGG | - | chr3_1:76288195-76288214 | Msa0376240:intron | 45.0% | |
| CGGAAACGTGAGATTGTTGT+AGG | + | chr3_1:76288241-76288260 | None:intergenic | 45.0% | |
| ACAATCTCACGTTTCCGCAA+TGG | - | chr3_1:76288244-76288263 | Msa0376240:intron | 45.0% | |
| TAGTGTCATCACCACCATTG+CGG | + | chr3_1:76288261-76288280 | None:intergenic | 45.0% | |
| ! | ATTGTGCTGCTGGAGTCAAA+TGG | - | chr3_1:76288326-76288345 | Msa0376240:intron | 45.0% |
| ! | AGGTTGGATTTCTAGACCTC+TGG | + | chr3_1:76288366-76288385 | None:intergenic | 45.0% |
| GGAGATTGGAACAACAACAG+AGG | - | chr3_1:76288408-76288427 | Msa0376240:CDS | 45.0% | |
| GATTGGAACAACAACAGAGG+GGG | - | chr3_1:76288411-76288430 | Msa0376240:CDS | 45.0% | |
| CTAGCAGCCTCATTAAAAGG+TGG | + | chr3_1:76288496-76288515 | None:intergenic | 45.0% | |
| GCTAGAAAAGCTGCTGGATT+TGG | - | chr3_1:76288511-76288530 | Msa0376240:intron | 45.0% | |
| GCAAGAGGTTCATACCATTC+GGG | + | chr3_1:76288538-76288557 | None:intergenic | 45.0% | |
| TTGGGCACTTTAACAGCAAG+AGG | + | chr3_1:76288553-76288572 | None:intergenic | 45.0% | |
| !! | ATATTAAATATATTTGTATA+CGG | - | chr3_1:76285993-76286012 | Msa0376240:CDS | 5.0% |
| !!! | TATTGAATTTTAAATATAAA+AGG | + | chr3_1:76288596-76288615 | None:intergenic | 5.0% |
| AGCTCACGAAGAAACCTTGG+TGG | - | chr3_1:76284007-76284026 | Msa0376240:three_prime_UTR | 50.0% | |
| AGGGTTGTATGGTTCAGCGA+TGG | + | chr3_1:76284120-76284139 | None:intergenic | 50.0% | |
| AGGTCGACAGAAGGGTTGTA+TGG | + | chr3_1:76284131-76284150 | None:intergenic | 50.0% | |
| GGATGTGAAGGTCGACAGAA+GGG | + | chr3_1:76284139-76284158 | None:intergenic | 50.0% | |
| ! | GAAAGAAAGTGCAGAGACGC+TGG | + | chr3_1:76284183-76284202 | None:intergenic | 50.0% |
| TGTCTTGCAGGTGAAGTTGG+TGG | - | chr3_1:76284262-76284281 | Msa0376240:CDS | 50.0% | |
| ! | ATGCCCAAGTTGGGTAAAGC+AGG | - | chr3_1:76284296-76284315 | Msa0376240:CDS | 50.0% |
| GCTTCCTGCTTTACCCAACT+TGG | + | chr3_1:76284303-76284322 | None:intergenic | 50.0% | |
| AAGCAGGAAGCTTGCAAAGC+AGG | - | chr3_1:76284312-76284331 | Msa0376240:CDS | 50.0% | |
| AGCAGGAAGCTTGCAAAGCA+GGG | - | chr3_1:76284313-76284332 | Msa0376240:CDS | 50.0% | |
| GTTGGGCCATTGATCTTTCG+TGG | - | chr3_1:76284369-76284388 | Msa0376240:CDS | 50.0% | |
| ! | AATCTCGGGTTCTAGCTAGC+AGG | + | chr3_1:76284534-76284553 | None:intergenic | 50.0% |
| TCGCACACTGCAGAGAATCT+CGG | + | chr3_1:76284549-76284568 | None:intergenic | 50.0% | |
| GTTGCTCACTTTCGAGGAAC+CGG | + | chr3_1:76285285-76285304 | None:intergenic | 50.0% | |
| !! | CGCTAGTTCTGCTCACAACT+TGG | + | chr3_1:76285481-76285500 | None:intergenic | 50.0% |
| ACCTTGCAGAGACAGAGAAG+AGG | + | chr3_1:76286250-76286269 | None:intergenic | 50.0% | |
| TGAAGGTGGCACAGGATGAA+GGG | - | chr3_1:76286583-76286602 | Msa0376240:intron | 50.0% | |
| TCTTCTTGCTGCACGACTTG+AGG | - | chr3_1:76286617-76286636 | Msa0376240:intron | 50.0% | |
| TAAATCCTCGGAAGTGGAGG+TGG | + | chr3_1:76286697-76286716 | None:intergenic | 50.0% | |
| TAGGAACTCTTGTCTTCGGC+AGG | - | chr3_1:76287252-76287271 | Msa0376240:intron | 50.0% | |
| ! | TGGCTGGAGCTTTATAGCAC+TGG | + | chr3_1:76287591-76287610 | None:intergenic | 50.0% |
| CTCCAGCCATGACATGATCT+GGG | - | chr3_1:76287602-76287621 | Msa0376240:intron | 50.0% | |
| ACTCCTCCCAGATCATGTCA+TGG | + | chr3_1:76287611-76287630 | None:intergenic | 50.0% | |
| TGACATGATCTGGGAGGAGT+TGG | - | chr3_1:76287611-76287630 | Msa0376240:intron | 50.0% | |
| !! | GGGAGGAGTTGGCTTTATTG+TGG | - | chr3_1:76287622-76287641 | Msa0376240:intron | 50.0% |
| TGAGTGTCAAAACAGGCCAG+AGG | - | chr3_1:76288202-76288221 | Msa0376240:intron | 50.0% | |
| ATCTCACGTTTCCGCAATGG+TGG | - | chr3_1:76288247-76288266 | Msa0376240:intron | 50.0% | |
| CTGCTGGAGTCAAATGGTTC+AGG | - | chr3_1:76288332-76288351 | Msa0376240:intron | 50.0% | |
| GGTTCAGGTATCTATGCCAG+AGG | - | chr3_1:76288347-76288366 | Msa0376240:CDS | 50.0% | |
| GGGAGCTCACGAAGAAACCT+TGG | - | chr3_1:76284004-76284023 | Msa0376240:three_prime_UTR | 55.0% | |
| GGTCGGCGGTGTTCAAAACT+CGG | + | chr3_1:76284043-76284062 | None:intergenic | 55.0% | |
| GGGATGTGAAGGTCGACAGA+AGG | + | chr3_1:76284140-76284159 | None:intergenic | 55.0% | |
| TCCGAGTCTCATGCCCAAGT+TGG | - | chr3_1:76284286-76284305 | Msa0376240:CDS | 55.0% | |
| CCCAACTTGGGCATGAGACT+CGG | + | chr3_1:76284290-76284309 | None:intergenic | 55.0% | |
| CCGAGTCTCATGCCCAAGTT+GGG | - | chr3_1:76284287-76284306 | Msa0376240:CDS | 55.0% | |
| CGCACACTGCAGAGAATCTC+GGG | + | chr3_1:76284548-76284567 | None:intergenic | 55.0% | |
| ATGCAAATGCATGTGCCGCG+AGG | + | chr3_1:76284886-76284905 | None:intergenic | 55.0% | |
| GCGGCACATGCATTTGCATG+TGG | - | chr3_1:76284887-76284906 | Msa0376240:intron | 55.0% | |
| GCCTCTTCTCTGTCTCTGCA+AGG | - | chr3_1:76286246-76286265 | Msa0376240:intron | 55.0% | |
| ! | GGGCTACTGGCCTGCTTTAT+TGG | - | chr3_1:76286465-76286484 | Msa0376240:intron | 55.0% |
| GGATTTCGTGAAGGTGGCAC+AGG | - | chr3_1:76286575-76286594 | Msa0376240:intron | 55.0% | |
| GTGAAGGTGGCACAGGATGA+AGG | - | chr3_1:76286582-76286601 | Msa0376240:intron | 55.0% | |
| !! | GGAGCATTACCGGCTCATGA+CGG | - | chr3_1:76286657-76286676 | Msa0376240:intron | 55.0% |
| !! | TACCGGCTCATGACGGTCTT+TGG | - | chr3_1:76286664-76286683 | Msa0376240:intron | 55.0% |
| ! | ACCGGCTCATGACGGTCTTT+GGG | - | chr3_1:76286665-76286684 | Msa0376240:intron | 55.0% |
| TCCCAAAGACCGTCATGAGC+CGG | + | chr3_1:76286669-76286688 | None:intergenic | 55.0% | |
| TTTGGGAGGTAAGGTGGGAG+TGG | - | chr3_1:76286927-76286946 | Msa0376240:intron | 55.0% | |
| GCTCCAGCCATGACATGATC+TGG | - | chr3_1:76287601-76287620 | Msa0376240:intron | 55.0% | |
| CTCCCAGATCATGTCATGGC+TGG | + | chr3_1:76287607-76287626 | None:intergenic | 55.0% | |
| CAGCCATGACATGATCTGGG+AGG | - | chr3_1:76287605-76287624 | Msa0376240:intron | 55.0% | |
| AGGCAGCACATCAAGTCCTC+TGG | + | chr3_1:76288221-76288240 | None:intergenic | 55.0% | |
| GAGGCTGCTAGAAAAGCTGC+TGG | - | chr3_1:76288505-76288524 | Msa0376240:intron | 55.0% | |
| ! | CTGCTGGATTTGGTCCCGAA+TGG | - | chr3_1:76288521-76288540 | Msa0376240:intron | 55.0% |
| TCGCGCCTTCTCGAATGGGT+CGG | + | chr3_1:76284060-76284079 | None:intergenic | 60.0% | |
| CGAGTCGCGCCTTCTCGAAT+GGG | + | chr3_1:76284064-76284083 | None:intergenic | 60.0% | |
| ! | CCATTCGAGAAGGCGCGACT+CGG | - | chr3_1:76284062-76284081 | Msa0376240:intron | 60.0% |
| TCGGCGACTCAGTCGCTTCA+CGG | - | chr3_1:76284081-76284100 | Msa0376240:intron | 60.0% | |
| AGAGACGCTGGAGAGCCTTG+CGG | + | chr3_1:76284171-76284190 | None:intergenic | 60.0% | |
| GCTGCACGACTTGAGGAGCT+AGG | - | chr3_1:76286624-76286643 | Msa0376240:intron | 60.0% | |
| TTCTGCCACCTCCACTTCCG+AGG | - | chr3_1:76286689-76286708 | Msa0376240:intron | 60.0% | |
| !! | TCGGAGCGCTGCTTCCACCA+AGG | + | chr3_1:76284024-76284043 | None:intergenic | 65.0% |
| CACCGCCGACCCATTCGAGA+AGG | - | chr3_1:76284052-76284071 | Msa0376240:three_prime_UTR | 65.0% | |
| CGCCTTCTCGAATGGGTCGG+CGG | + | chr3_1:76284057-76284076 | None:intergenic | 65.0% | |
| CCGAGTCGCGCCTTCTCGAA+TGG | + | chr3_1:76284065-76284084 | None:intergenic | 65.0% | |
| GCGACTCAGTCGCTTCACGG+TGG | - | chr3_1:76284084-76284103 | Msa0376240:intron | 65.0% | |
| GTCGCTTCACGGTGGCTCGA+TGG | - | chr3_1:76284092-76284111 | Msa0376240:intron | 65.0% | |
| AGACGCTGGAGAGCCTTGCG+GGG | + | chr3_1:76284169-76284188 | None:intergenic | 65.0% | |
| GAGACGCTGGAGAGCCTTGC+GGG | + | chr3_1:76284170-76284189 | None:intergenic | 65.0% | |
| CGGGGCGATCGGGGATGTGA+AGG | + | chr3_1:76284151-76284170 | None:intergenic | 70.0% | |
| ACATCCCCGATCGCCCCGCA+AGG | - | chr3_1:76284153-76284172 | Msa0376240:CDS | 70.0% | |
| AGAGCCTTGCGGGGCGATCG+GGG | + | chr3_1:76284160-76284179 | None:intergenic | 70.0% | |
| GAGAGCCTTGCGGGGCGATC+GGG | + | chr3_1:76284161-76284180 | None:intergenic | 70.0% | |
| GGAGAGCCTTGCGGGGCGAT+CGG | + | chr3_1:76284162-76284181 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 76283967 | 76288760 | 76283967 | ID=Msa0376240;Name=Msa0376240 |
| chr3_1 | mRNA | 76283967 | 76288760 | 76283967 | ID=Msa0376240-mRNA-1;Parent=Msa0376240;Name=Msa0376240-mRNA-1;_AED=0.05;_eAED=0.05;_QI=35|1|1|1|0.75|0.6|5|151|298 |
| chr3_1 | exon | 76283967 | 76284074 | 76283967 | ID=Msa0376240-mRNA-1:exon:18009;Parent=Msa0376240-mRNA-1 |
| chr3_1 | exon | 76284105 | 76284510 | 76284105 | ID=Msa0376240-mRNA-1:exon:18008;Parent=Msa0376240-mRNA-1 |
| chr3_1 | exon | 76285975 | 76286205 | 76285975 | ID=Msa0376240-mRNA-1:exon:18007;Parent=Msa0376240-mRNA-1 |
| chr3_1 | exon | 76288336 | 76288455 | 76288336 | ID=Msa0376240-mRNA-1:exon:18006;Parent=Msa0376240-mRNA-1 |
| chr3_1 | exon | 76288543 | 76288760 | 76288543 | ID=Msa0376240-mRNA-1:exon:18005;Parent=Msa0376240-mRNA-1 |
| chr3_1 | five_prime_UTR | 76288726 | 76288760 | 76288726 | ID=Msa0376240-mRNA-1:five_prime_utr;Parent=Msa0376240-mRNA-1 |
| chr3_1 | CDS | 76288543 | 76288725 | 76288543 | ID=Msa0376240-mRNA-1:cds;Parent=Msa0376240-mRNA-1 |
| chr3_1 | CDS | 76288336 | 76288455 | 76288336 | ID=Msa0376240-mRNA-1:cds;Parent=Msa0376240-mRNA-1 |
| chr3_1 | CDS | 76285975 | 76286205 | 76285975 | ID=Msa0376240-mRNA-1:cds;Parent=Msa0376240-mRNA-1 |
| chr3_1 | CDS | 76284148 | 76284510 | 76284148 | ID=Msa0376240-mRNA-1:cds;Parent=Msa0376240-mRNA-1 |
| chr3_1 | three_prime_UTR | 76284105 | 76284147 | 76284105 | ID=Msa0376240-mRNA-1:three_prime_utr;Parent=Msa0376240-mRNA-1 |
| chr3_1 | three_prime_UTR | 76283967 | 76284074 | 76283967 | ID=Msa0376240-mRNA-1:three_prime_utr;Parent=Msa0376240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
