AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0792170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792170 MtrunA17_Chr4g0076721 84.012 344 23 7 3 331 8 334 0.0 512
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0792170 AT2G02410.3 71.318 258 66 4 74 331 10 259 1.70e-131 375
Msa0792170 AT2G02410.1 71.318 258 66 4 74 331 58 307 4.38e-131 376
Msa0792170 AT2G02410.6 61.639 305 81 5 55 331 39 335 6.50e-125 362
Msa0792170 AT2G02410.2 71.008 238 61 4 94 331 13 242 1.10e-118 342
Msa0792170 AT2G02410.5 73.128 227 53 4 105 331 3 221 3.57e-116 335
Msa0792170 AT2G02410.13 73.128 227 53 4 105 331 3 221 3.57e-116 335
Msa0792170 AT2G02410.12 69.231 195 52 4 74 268 10 196 5.41e-92 273
Msa0792170 AT2G02410.11 64.953 214 67 4 55 268 39 244 9.28e-92 275
Msa0792170 AT2G02410.8 64.953 214 67 4 55 268 39 244 9.28e-92 275
Msa0792170 AT2G02410.9 65.868 167 49 4 74 240 10 168 7.93e-71 218
Msa0792170 AT2G02410.7 65.476 168 50 4 74 241 58 217 1.54e-70 219
Msa0792170 AT2G02410.10 65.476 168 50 4 74 241 58 217 1.54e-70 219
Msa0792170 AT2G02410.4 56.410 195 49 5 74 240 58 244 1.36e-64 205

Find 79 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTAGGTTTCAGCTTTAA+AGG 0.156682 5_3:+3252253 Msa0792170:intron
CTTCTTATTGTAATTGTAAT+TGG 0.157438 5_3:-3251427 None:intergenic
ATTCTTCTTGCTGCTGCTTT+TGG 0.158995 5_3:-3251496 None:intergenic
ATTGTAATTGTAATTGGAAT+TGG 0.301174 5_3:-3251421 None:intergenic
AGGATGGTTGCCCCAAAGTC+TGG 0.335763 5_3:+3252276 Msa0792170:CDS
TTGGCGTTAGAAGTGATTCT+AGG 0.343874 5_3:-3251576 None:intergenic
GGAAGAATATTCCTTGTGAT+TGG 0.354869 5_3:-3252073 None:intergenic
AGTTATCAGCCATGATGTTA+AGG 0.355990 5_3:-3257103 None:intergenic
ACACAAATCAGCTGGGTCTT+GGG 0.361413 5_3:+3251845 Msa0792170:CDS
TAACCATCAACAAGCAAAAC+AGG 0.364806 5_3:-3251895 None:intergenic
GTTACAATGTCTGTGGATAT+TGG 0.373030 5_3:+3251914 Msa0792170:CDS
TTTACGTGTTTACAATATCT+TGG 0.376596 5_3:-3257188 None:intergenic
GAAGAATATTCCTTGTGATT+GGG 0.378710 5_3:-3252072 None:intergenic
AACGAACAAGATGATGATAA+TGG 0.382465 5_3:-3251372 None:intergenic
GTTATCAGCCATGATGTTAA+GGG 0.389151 5_3:-3257102 None:intergenic
TAAGTTCGTCAATAAGCTTC+TGG 0.389972 5_3:-3251984 None:intergenic
TGATTTGAATGAATTTAGTT+AGG 0.391080 5_3:+3251288 Msa0792170:five_prime_UTR
GAAGTGATTCTAGGAGGAGT+TGG 0.391837 5_3:-3251567 None:intergenic
GTATTTGATGCCATGATGTC+TGG 0.393030 5_3:+3252045 Msa0792170:CDS
TAGATGAGGAAGAGGGATGA+TGG 0.396830 5_3:+3251311 Msa0792170:five_prime_UTR
ATTCTAGGAGGAGTTGGAGT+TGG 0.400020 5_3:-3251561 None:intergenic
CGGTAACTAGTTGAAGGTCT+TGG 0.402341 5_3:-3251742 None:intergenic
GGAGGAGTTGGAGTTGGAGT+TGG 0.403011 5_3:-3251555 None:intergenic
ACCTTCGCTTCCTCAAGATA+TGG 0.413759 5_3:+3251604 Msa0792170:CDS
AGAAGTGACGACCCAGACTT+TGG 0.415939 5_3:-3252288 None:intergenic
GAAGTGACGACCCAGACTTT+GGG 0.421042 5_3:-3252287 None:intergenic
TACACAAATCAGCTGGGTCT+TGG 0.424310 5_3:+3251844 Msa0792170:CDS
AACTTTCGAGTTAATAATGA+AGG 0.436263 5_3:-3257075 None:intergenic
GTGTAGTAGAGGGAGGTTGT+TGG 0.441657 5_3:-3251826 None:intergenic
GAGGAAGCGAAGGTTCTGTT+TGG 0.441688 5_3:-3251595 None:intergenic
TAGTTAGGTAGATGAGGAAG+AGG 0.450690 5_3:+3251303 Msa0792170:five_prime_UTR
AGTTGAAGGTCTTGGAGTGC+TGG 0.452523 5_3:-3251734 None:intergenic
CTGATGCATCTGCTGATACA+TGG 0.474850 5_3:+3252118 Msa0792170:CDS
AAAGAAGAAGGCCGAGAAAG+AGG 0.474951 5_3:+3251768 Msa0792170:CDS
AAGAATATTCCTTGTGATTG+GGG 0.489548 5_3:-3252071 None:intergenic
CCTCTACTACACAAATCAGC+TGG 0.492718 5_3:+3251837 Msa0792170:CDS
CACAAATCAGCTGGGTCTTG+GGG 0.493462 5_3:+3251846 Msa0792170:CDS
ATCCGCAAGATCCTCTTTCT+CGG 0.497073 5_3:-3251779 None:intergenic
TGTTTGGAGCAGCAAGGCAT+TGG 0.500774 5_3:+3252582 Msa0792170:CDS
GATCACGATAGAGGTCAGTT+TGG 0.509125 5_3:-3251804 None:intergenic
GTAGATCAAGGCATCACAAA+AGG 0.512172 5_3:+3252855 Msa0792170:intron
AGTTAGGTAGATGAGGAAGA+GGG 0.514357 5_3:+3251304 Msa0792170:five_prime_UTR
TGAATTTAGTTAGGTAGATG+AGG 0.514465 5_3:+3251297 Msa0792170:five_prime_UTR
CAATCTACCTTGAAAAGAAG+TGG 0.518431 5_3:-3256869 None:intergenic
AATCACAAGGAATATTCTTC+CGG 0.528595 5_3:+3252075 Msa0792170:CDS
CCAGCTGATTTGTGTAGTAG+AGG 0.530779 5_3:-3251837 None:intergenic
TGAGAAAACAATGTCGATGC+CGG 0.535047 5_3:-3252094 None:intergenic
GTTTCAGCTTTAAAGGAGGA+TGG 0.538423 5_3:+3252260 Msa0792170:CDS
CACCTTTAGTATGCTTAGAG+AGG 0.540405 5_3:+3252008 Msa0792170:CDS
CAATCTTGATGCAGAAGTAG+TGG 0.544356 5_3:+3256900 Msa0792170:CDS
AGGTTGTTGGATCACGATAG+AGG 0.546658 5_3:-3251813 None:intergenic
GGATGGTTGCCCCAAAGTCT+GGG 0.556380 5_3:+3252277 Msa0792170:CDS
TGCCTTGCTGCTCCAAACAA+AGG 0.558029 5_3:-3252578 None:intergenic
GACCTCTCTAAGCATACTAA+AGG 0.559341 5_3:-3252010 None:intergenic
ATGAGGAAGAGGGATGATGG+AGG 0.562071 5_3:+3251314 Msa0792170:five_prime_UTR
ATTGGGGAATCCAGACATCA+TGG 0.573403 5_3:-3252055 None:intergenic
CTCTACTACACAAATCAGCT+GGG 0.575051 5_3:+3251838 Msa0792170:CDS
AGTTGAAACCCTTAACATCA+TGG 0.578393 5_3:+3257094 Msa0792170:three_prime_UTR
GGCCGAGAAAGAGGATCTTG+CGG 0.579972 5_3:+3251777 Msa0792170:CDS
GGCCTTTGTTTGGAGCAGCA+AGG 0.582037 5_3:+3252576 Msa0792170:CDS
CAGCTGATTTGTGTAGTAGA+GGG 0.582819 5_3:-3251836 None:intergenic
TCCATATCTTGAGGAAGCGA+AGG 0.583867 5_3:-3251605 None:intergenic
AAGAGATGCTTCAAGAGCAA+AGG 0.590832 5_3:+3252884 Msa0792170:CDS
AAGTGACGACCCAGACTTTG+GGG 0.593977 5_3:-3252286 None:intergenic
TACCTACCTTCCATATCTTG+AGG 0.597905 5_3:-3251614 None:intergenic
GAACTAATTGAATATGACAC+TGG 0.598924 5_3:+3257150 Msa0792170:three_prime_UTR
ACAAATCAGCTGGGTCTTGG+GGG 0.604764 5_3:+3251847 Msa0792170:CDS
AATGAAAGTACTAGTTCCGA+AGG 0.610735 5_3:+3251217 None:intergenic
TGTCAACAACAAGCAGCACA+TGG 0.612468 5_3:+3252317 Msa0792170:CDS
GTCTGGATTCCCCAATCACA+AGG 0.613410 5_3:+3252062 Msa0792170:CDS
CTGATTTGTGTAGTAGAGGG+AGG 0.619033 5_3:-3251833 None:intergenic
GTTGATGGTTACAATGTCTG+TGG 0.627615 5_3:+3251907 Msa0792170:CDS
GCGTTAGAAGTGATTCTAGG+AGG 0.630133 5_3:-3251573 None:intergenic
TCGCTTCCTCAAGATATGGA+AGG 0.635284 5_3:+3251608 Msa0792170:CDS
TTAGGTTTCAGCTTTAAAGG+AGG 0.636930 5_3:+3252256 Msa0792170:intron
GATCAAGGCATCACAAAAGG+AGG 0.644648 5_3:+3252858 Msa0792170:intron
AACCATCAACAAGCAAAACA+GGG 0.648456 5_3:-3251894 None:intergenic
TGGATGCTCTGAAGAACCTG+AGG 0.667302 5_3:+3256920 Msa0792170:CDS
CAGCAAGGCATTGGTAACCG+AGG 0.676741 5_3:+3252591 Msa0792170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATATTATTATTTATTT+AGG + chr5_3:3251693-3251712 Msa0792170:intron 0.0%
!!! TATTTTATTTTATTTTTGTG+TGG - chr5_3:3251249-3251268 None:intergenic 10.0%
!! TATGTTATATACAAATAGTT+GGG - chr5_3:3253493-3253512 None:intergenic 15.0%
!! ATATGTTATATACAAATAGT+TGG - chr5_3:3253494-3253513 None:intergenic 15.0%
!! ACTATTTGTATATAACATAT+TGG + chr5_3:3253494-3253513 Msa0792170:intron 15.0%
!! AACAAAGAAGTTAATAAATT+AGG - chr5_3:3253932-3253951 None:intergenic 15.0%
!! ATATAAAGAATGACAAAAAT+AGG - chr5_3:3254787-3254806 None:intergenic 15.0%
!!! TTTTTTTATCACTGTAATTA+AGG - chr5_3:3255333-3255352 None:intergenic 15.0%
!! AATTAGAAGATAAATGTATT+AGG + chr5_3:3255662-3255681 Msa0792170:intron 15.0%
!!! TTTCACAAAAAAAAATGTTT+TGG + chr5_3:3255839-3255858 Msa0792170:intron 15.0%
!!! AAAAAATGTTTTGGATATAT+TGG + chr5_3:3255848-3255867 Msa0792170:intron 15.0%
!!! AAACAACTTTTTTTATTACA+GGG + chr5_3:3256730-3256749 Msa0792170:intron 15.0%
!!! TTTTATTTTATTTTGCATGT+CGG + chr5_3:3257048-3257067 Msa0792170:three_prime_UTR 15.0%
!! TGATTTGAATGAATTTAGTT+AGG + chr5_3:3251288-3251307 Msa0792170:five_prime_UTR 20.0%
!! ATTGTAATTGTAATTGGAAT+TGG - chr5_3:3251424-3251443 None:intergenic 20.0%
!! CTTCTTATTGTAATTGTAAT+TGG - chr5_3:3251430-3251449 None:intergenic 20.0%
!! CATTTGAAAAAAAGAAGAAA+AGG - chr5_3:3252488-3252507 None:intergenic 20.0%
!!! TTGAATCTCAAATTTTTGAA+TGG + chr5_3:3252666-3252685 Msa0792170:intron 20.0%
!! AACAAAACGAATATATCTAA+TGG - chr5_3:3252946-3252965 None:intergenic 20.0%
!! AAAATCACAATAGATAAAAC+TGG - chr5_3:3253071-3253090 None:intergenic 20.0%
!!! TTCTATTTTCCTTTTCATTA+TGG - chr5_3:3253192-3253211 None:intergenic 20.0%
!!! TATTGGTAATAATCTAACTT+TGG + chr5_3:3253511-3253530 Msa0792170:intron 20.0%
!! TTTAATGACATATATGTTGT+TGG - chr5_3:3253681-3253700 None:intergenic 20.0%
!! CTCAAGAAAATCAAATTATA+AGG - chr5_3:3253728-3253747 None:intergenic 20.0%
!! GACTAAATTTGAATTTGTAA+AGG + chr5_3:3254205-3254224 Msa0792170:intron 20.0%
!! TAAATTTGAATTTGTAAAGG+TGG + chr5_3:3254208-3254227 Msa0792170:intron 20.0%
!!! TATTTTAGCTCTTTAATCTA+AGG + chr5_3:3254726-3254745 Msa0792170:intron 20.0%
!! TTAATGTATTTATGGTATGA+AGG + chr5_3:3255238-3255257 Msa0792170:intron 20.0%
!! GTGAATGTTATAGTTATTAT+AGG + chr5_3:3255693-3255712 Msa0792170:intron 20.0%
!! TTATTATAGGTAATGATATG+AGG + chr5_3:3255706-3255725 Msa0792170:intron 20.0%
!! TATTATAGGTAATGATATGA+GGG + chr5_3:3255707-3255726 Msa0792170:intron 20.0%
!!! TCATTTTTAAACCATAAACT+TGG + chr5_3:3255760-3255779 Msa0792170:intron 20.0%
!!! CATTTTTAAACCATAAACTT+GGG + chr5_3:3255761-3255780 Msa0792170:intron 20.0%
!!! ATTTTTAAACCATAAACTTG+GGG + chr5_3:3255762-3255781 Msa0792170:intron 20.0%
!! TGAATATTATGTTATAGCTA+TGG + chr5_3:3256264-3256283 Msa0792170:intron 20.0%
!! AAACAAAACTTAGAAGAATT+AGG - chr5_3:3256402-3256421 None:intergenic 20.0%
!!! AATTCTTCTAAGTTTTGTTT+TGG + chr5_3:3256402-3256421 Msa0792170:intron 20.0%
!!! TTTTATAGATGTCTTATAGT+TGG + chr5_3:3256567-3256586 Msa0792170:intron 20.0%
!! TTTATAGATGTCTTATAGTT+GGG + chr5_3:3256568-3256587 Msa0792170:intron 20.0%
!! CAAGATTTACAACTTAATAT+TGG - chr5_3:3256613-3256632 None:intergenic 20.0%
!!! CAAACAACTTTTTTTATTAC+AGG + chr5_3:3256729-3256748 Msa0792170:intron 20.0%
!!! ACATGTGAATATGTTTTAAT+AGG + chr5_3:3257011-3257030 Msa0792170:three_prime_UTR 20.0%
!!! ATTTTATTTTTGTGTGGTTC+TGG - chr5_3:3251243-3251262 None:intergenic 25.0%
!! CTCAAAAAACATTTTCTCAA+TGG + chr5_3:3251943-3251962 Msa0792170:CDS 25.0%
! TATTCTTTACTCCTCAATTT+AGG + chr5_3:3252238-3252257 Msa0792170:intron 25.0%
!! AATTTAGGTTTCAGCTTTAA+AGG + chr5_3:3252253-3252272 Msa0792170:intron 25.0%
!!! TTCTTCTTTTTTTCAAATGC+TGG + chr5_3:3252489-3252508 Msa0792170:intron 25.0%
! TGTAATTGAGATTTATACTC+TGG + chr5_3:3252541-3252560 Msa0792170:intron 25.0%
!! GTCATATTAATGTTTTACCT+CGG - chr5_3:3252611-3252630 None:intergenic 25.0%
!! TCCTTCAATGATATTTTACA+TGG + chr5_3:3252808-3252827 Msa0792170:intron 25.0%
! ACCATGTAAAATATCATTGA+AGG - chr5_3:3252812-3252831 None:intergenic 25.0%
!! TTTTATGATTTTTCGCTGTA+TGG + chr5_3:3252973-3252992 Msa0792170:intron 25.0%
! CTTAATGAGTATCTAACTAT+GGG + chr5_3:3253110-3253129 Msa0792170:intron 25.0%
! TTAATGAGTATCTAACTATG+GGG + chr5_3:3253111-3253130 Msa0792170:intron 25.0%
! TTAGAAACTTTCTCCTATTA+AGG + chr5_3:3253218-3253237 Msa0792170:intron 25.0%
! TAGAAACTTTCTCCTATTAA+GGG + chr5_3:3253219-3253238 Msa0792170:intron 25.0%
! CTACATAAATACAGAAACTA+AGG - chr5_3:3253290-3253309 None:intergenic 25.0%
!! TAAATTTTCCCATCTCAAAA+TGG + chr5_3:3253364-3253383 Msa0792170:intron 25.0%
! AATCAAATTATAAGGACACA+TGG - chr5_3:3253720-3253739 None:intergenic 25.0%
!! TAAAAATCTGGAACAGTTAA+AGG - chr5_3:3253761-3253780 None:intergenic 25.0%
! GGAAATCAAAAGTAAAAATC+TGG - chr5_3:3253773-3253792 None:intergenic 25.0%
! TTAATAAATTAGGATGACCA+AGG - chr5_3:3253922-3253941 None:intergenic 25.0%
! TATCGTTCATTCTGATATAT+AGG + chr5_3:3254058-3254077 Msa0792170:intron 25.0%
! ATCGTTCATTCTGATATATA+GGG + chr5_3:3254059-3254078 Msa0792170:intron 25.0%
!! CTATTTTGTAGTTCTTATTC+AGG - chr5_3:3254530-3254549 None:intergenic 25.0%
!! TAAAAAGTATATTGCTGGAT+TGG - chr5_3:3254679-3254698 None:intergenic 25.0%
!! ACATCTAAAAAGTATATTGC+TGG - chr5_3:3254684-3254703 None:intergenic 25.0%
! AGGTTTCTATTAATTGAAGA+AGG + chr5_3:3254905-3254924 Msa0792170:intron 25.0%
!!! TCCAAAAACTATTTTTCTTG+GGG - chr5_3:3255165-3255184 None:intergenic 25.0%
!!! CTCCAAAAACTATTTTTCTT+GGG - chr5_3:3255166-3255185 None:intergenic 25.0%
! GTTGGATGTTAATGTATTTA+TGG + chr5_3:3255230-3255249 Msa0792170:intron 25.0%
!!! GAGCTTTGAAATGATTTATT+TGG - chr5_3:3255277-3255296 None:intergenic 25.0%
! AATTTCACAAACAAAACTCA+AGG - chr5_3:3255568-3255587 None:intergenic 25.0%
! ATCTCTATGTATTCAACATT+GGG + chr5_3:3256031-3256050 Msa0792170:intron 25.0%
! GAAATAGATCACACATTAAT+AGG - chr5_3:3256160-3256179 None:intergenic 25.0%
! TTAATGTGTGATCTATTTCA+AGG + chr5_3:3256161-3256180 Msa0792170:intron 25.0%
!!! TCAAGGTATTGTACATTAAT+TGG + chr5_3:3256178-3256197 Msa0792170:intron 25.0%
!!! AGAAGCATAATGTAGTTTTT+TGG + chr5_3:3256227-3256246 Msa0792170:intron 25.0%
! AGTAACAGTTTCATTCATAT+AGG - chr5_3:3256301-3256320 None:intergenic 25.0%
! TATCACAAAAAATGTTCTCA+TGG + chr5_3:3256482-3256501 Msa0792170:intron 25.0%
! ATCACAAAAAATGTTCTCAT+GGG + chr5_3:3256483-3256502 Msa0792170:intron 25.0%
! TTATAGATGTCTTATAGTTG+GGG + chr5_3:3256569-3256588 Msa0792170:intron 25.0%
!! ATTAAGTTGTAAATCTTGTG+TGG + chr5_3:3256615-3256634 Msa0792170:intron 25.0%
!! TTAAGTTGTAAATCTTGTGT+GGG + chr5_3:3256616-3256635 Msa0792170:intron 25.0%
! TCATTTCATGTTATTGAGTT+AGG - chr5_3:3256689-3256708 None:intergenic 25.0%
! AACTCAATAACATGAAATGA+TGG + chr5_3:3256689-3256708 Msa0792170:intron 25.0%
! ACTCAATAACATGAAATGAT+GGG + chr5_3:3256690-3256709 Msa0792170:intron 25.0%
!!! AACTTTCGAGTTAATAATGA+AGG - chr5_3:3257078-3257097 None:intergenic 25.0%
! TTTACGTGTTTACAATATCT+TGG - chr5_3:3257191-3257210 None:intergenic 25.0%
TGAATTTAGTTAGGTAGATG+AGG + chr5_3:3251297-3251316 Msa0792170:five_prime_UTR 30.0%
AACGAACAAGATGATGATAA+TGG - chr5_3:3251375-3251394 None:intergenic 30.0%
! TTTTTACGGTAACTAGTTGA+AGG - chr5_3:3251751-3251770 None:intergenic 30.0%
TAGTTACCGTAAAAAGAAGA+AGG + chr5_3:3251756-3251775 Msa0792170:CDS 30.0%
AAGAATATTCCTTGTGATTG+GGG - chr5_3:3252074-3252093 None:intergenic 30.0%
GAAGAATATTCCTTGTGATT+GGG - chr5_3:3252075-3252094 None:intergenic 30.0%
AATCACAAGGAATATTCTTC+CGG + chr5_3:3252075-3252094 Msa0792170:CDS 30.0%
! TGATACATGGATTGAAAAAG+AGG + chr5_3:3252131-3252150 Msa0792170:CDS 30.0%
TAAAGCTGAAACCTAAATTG+AGG - chr5_3:3252252-3252271 None:intergenic 30.0%
GAGAGAACAATAGTTATGAT+TGG - chr5_3:3252408-3252427 None:intergenic 30.0%
! TTTATACTCTGGATGTTTTC+AGG + chr5_3:3252552-3252571 Msa0792170:intron 30.0%
! TTATACTCTGGATGTTTTCA+GGG + chr5_3:3252553-3252572 Msa0792170:intron 30.0%
TGTCACACTAATCAAAGATT+TGG - chr5_3:3252759-3252778 None:intergenic 30.0%
GTGACAAATTGACAATCATT+TGG + chr5_3:3252773-3252792 Msa0792170:intron 30.0%
!! GGTCTTGTTTATTACTTGTT+TGG + chr5_3:3252829-3252848 Msa0792170:intron 30.0%
CCATAGTTAGATACTCATTA+AGG - chr5_3:3253112-3253131 None:intergenic 30.0%
CCTTAATGAGTATCTAACTA+TGG + chr5_3:3253109-3253128 Msa0792170:intron 30.0%
CTTGCATTGTAATTCTTGAT+GGG + chr5_3:3253147-3253166 Msa0792170:intron 30.0%
AAAGTTCTGCCATAATGAAA+AGG + chr5_3:3253180-3253199 Msa0792170:intron 30.0%
AGATTATATCCTCCCTTAAT+AGG - chr5_3:3253234-3253253 None:intergenic 30.0%
ATACAAATAGTTGGGATTGT+CGG - chr5_3:3253485-3253504 None:intergenic 30.0%
AGAGAAAAAAGACAAGTGAT+TGG - chr5_3:3253575-3253594 None:intergenic 30.0%
TACTTTGTGATACTTTCTGA+TGG + chr5_3:3253618-3253637 Msa0792170:intron 30.0%
!!! TTTTGATTTCCTTACTATCC+TGG + chr5_3:3253782-3253801 Msa0792170:intron 30.0%
TAGTGAATGTTAAAGACCAT+TGG + chr5_3:3253806-3253825 Msa0792170:intron 30.0%
TGAATTTGGCTAGAAAATGA+AGG - chr5_3:3254014-3254033 None:intergenic 30.0%
TCAGTCATTAAGACGAATAA+GGG - chr5_3:3254126-3254145 None:intergenic 30.0%
ATCAGTCATTAAGACGAATA+AGG - chr5_3:3254127-3254146 None:intergenic 30.0%
! TTGTGATTTTCCATTGTTGT+TGG - chr5_3:3254267-3254286 None:intergenic 30.0%
!! CTCGTAGCTTGTTTAATATT+GGG - chr5_3:3254290-3254309 None:intergenic 30.0%
!! TCTCGTAGCTTGTTTAATAT+TGG - chr5_3:3254291-3254310 None:intergenic 30.0%
AATGAGTAATGTGTAAAAGC+AGG - chr5_3:3254613-3254632 None:intergenic 30.0%
!! TGAACCTAGTATACTTTTTG+AGG + chr5_3:3254750-3254769 Msa0792170:intron 30.0%
! AAAGCCTCAAAAAGTATACT+AGG - chr5_3:3254757-3254776 None:intergenic 30.0%
AGAATGACAAAAATAGGAGT+AGG - chr5_3:3254781-3254800 None:intergenic 30.0%
ATCAACAGTATGAAAATCGT+TGG - chr5_3:3254962-3254981 None:intergenic 30.0%
! TCCCCAAGAAAAATAGTTTT+TGG + chr5_3:3255161-3255180 Msa0792170:intron 30.0%
!! CCTCCAAAAACTATTTTTCT+TGG - chr5_3:3255167-3255186 None:intergenic 30.0%
!! CCAAGAAAAATAGTTTTTGG+AGG + chr5_3:3255164-3255183 Msa0792170:intron 30.0%
! GGTATGAAGGTTGATTTATA+AGG + chr5_3:3255251-3255270 Msa0792170:intron 30.0%
!! AAAAGGCACTCTCAAATATA+TGG + chr5_3:3255307-3255326 Msa0792170:intron 30.0%
AGTCAAATTGAAGACATCTA+GGG - chr5_3:3255364-3255383 None:intergenic 30.0%
AAGTCAAATTGAAGACATCT+AGG - chr5_3:3255365-3255384 None:intergenic 30.0%
! ATGTCTTCAATTTGACTTCT+TGG + chr5_3:3255367-3255386 Msa0792170:intron 30.0%
! TTCAATTTGACTTCTTGGTA+TGG + chr5_3:3255372-3255391 Msa0792170:intron 30.0%
GTGAAGAAGAGACATATATA+TGG + chr5_3:3255458-3255477 Msa0792170:intron 30.0%
ATATATGGAGAAACCACTAA+AGG + chr5_3:3255473-3255492 Msa0792170:intron 30.0%
!!! AGTTTTGTTGTGCAATCATT+TGG + chr5_3:3255589-3255608 Msa0792170:intron 30.0%
AGCATAATCAATTGAAATCC+TGG + chr5_3:3255879-3255898 Msa0792170:intron 30.0%
TGTTAACAGAAAAGGGAAAT+TGG + chr5_3:3255913-3255932 Msa0792170:intron 30.0%
! CTTGTGTAATTATTCTGAGA+TGG - chr5_3:3255971-3255990 None:intergenic 30.0%
CAATGTTGAATACATAGAGA+TGG - chr5_3:3256032-3256051 None:intergenic 30.0%
CATCTCTATGTATTCAACAT+TGG + chr5_3:3256030-3256049 Msa0792170:intron 30.0%
TCTCTATGTATTCAACATTG+GGG + chr5_3:3256032-3256051 Msa0792170:intron 30.0%
!! TATGATGCATAAGAGTACTT+TGG + chr5_3:3256064-3256083 Msa0792170:intron 30.0%
!! ATAAGAGTACTTTGGATCAA+GGG + chr5_3:3256072-3256091 Msa0792170:intron 30.0%
!!! GCATAATGTAGTTTTTTGGT+CGG + chr5_3:3256231-3256250 Msa0792170:intron 30.0%
!!! CATAATGTAGTTTTTTGGTC+GGG + chr5_3:3256232-3256251 Msa0792170:intron 30.0%
! AGTTCTAACTTAGAAGACTT+AGG - chr5_3:3256437-3256456 None:intergenic 30.0%
ACATTAGTAAGCAAACCAAT+CGG - chr5_3:3256835-3256854 None:intergenic 30.0%
GAACTAATTGAATATGACAC+TGG + chr5_3:3257150-3257169 Msa0792170:three_prime_UTR 30.0%
! TTTCTATAGATTTTTGCCTG+TGG + chr5_3:3257255-3257274 Msa0792170:three_prime_UTR 30.0%
! TTCTATAGATTTTTGCCTGT+GGG + chr5_3:3257256-3257275 Msa0792170:three_prime_UTR 30.0%
AACCATCAACAAGCAAAACA+GGG - chr5_3:3251897-3251916 None:intergenic 35.0%
TAACCATCAACAAGCAAAAC+AGG - chr5_3:3251898-3251917 None:intergenic 35.0%
GTTACAATGTCTGTGGATAT+TGG + chr5_3:3251914-3251933 Msa0792170:CDS 35.0%
TAAGTTCGTCAATAAGCTTC+TGG - chr5_3:3251987-3252006 None:intergenic 35.0%
GGAAGAATATTCCTTGTGAT+TGG - chr5_3:3252076-3252095 None:intergenic 35.0%
!! TTAGGTTTCAGCTTTAAAGG+AGG + chr5_3:3252256-3252275 Msa0792170:intron 35.0%
!! TTAGTTTGCACAGATCAACA+AGG - chr5_3:3252430-3252449 None:intergenic 35.0%
TTGTTGATCTGTGCAAACTA+AGG + chr5_3:3252429-3252448 Msa0792170:intron 35.0%
! TATACTCTGGATGTTTTCAG+GGG + chr5_3:3252554-3252573 Msa0792170:intron 35.0%
CTTGTTTGGATAGTAGATCA+AGG + chr5_3:3252843-3252862 Msa0792170:intron 35.0%
GCTTGCATTGTAATTCTTGA+TGG + chr5_3:3253146-3253165 Msa0792170:intron 35.0%
AAACTTTCTCCTATTAAGGG+AGG + chr5_3:3253222-3253241 Msa0792170:intron 35.0%
!!! CTCTAGTACCATTTTGAGAT+GGG - chr5_3:3253375-3253394 None:intergenic 35.0%
!! TCTCTAGTACCATTTTGAGA+TGG - chr5_3:3253376-3253395 None:intergenic 35.0%
GAGAAGTAAAAACAATGCCT+TGG - chr5_3:3253659-3253678 None:intergenic 35.0%
ATTCACTAACCAGGATAGTA+AGG - chr5_3:3253794-3253813 None:intergenic 35.0%
GTCTTTAACATTCACTAACC+AGG - chr5_3:3253803-3253822 None:intergenic 35.0%
ATGTTAAAGACCATTGGCAT+AGG + chr5_3:3253812-3253831 Msa0792170:intron 35.0%
TGTTAAAGACCATTGGCATA+GGG + chr5_3:3253813-3253832 Msa0792170:intron 35.0%
AGTATTGCTTATCATTGCCT+TGG + chr5_3:3253902-3253921 Msa0792170:intron 35.0%
AAGGACTGACATACTTCTTA+AGG - chr5_3:3253995-3254014 None:intergenic 35.0%
AGCCAAATTCAGAGTCAAAT+AGG + chr5_3:3254023-3254042 Msa0792170:intron 35.0%
GCCAAATTCAGAGTCAAATA+GGG + chr5_3:3254024-3254043 Msa0792170:intron 35.0%
ACCCTATTTGACTCTGAATT+TGG - chr5_3:3254028-3254047 None:intergenic 35.0%
TCAGAATGAACGATAGCAAA+AGG - chr5_3:3254053-3254072 None:intergenic 35.0%
!!! AAGGTGGAAATTTTGATTCG+AGG + chr5_3:3254224-3254243 Msa0792170:intron 35.0%
! TTGTTGTTGGTACATGTCAT+TGG - chr5_3:3254254-3254273 None:intergenic 35.0%
ATGACATGTACCAACAACAA+TGG + chr5_3:3254254-3254273 Msa0792170:intron 35.0%
!! CGTTGATAATAGTTTGTCTG+TGG - chr5_3:3254471-3254490 None:intergenic 35.0%
CCACTTAAACATCCAAATGA+GGG - chr5_3:3254588-3254607 None:intergenic 35.0%
CCTCATTTGGATGTTTAAGT+GGG + chr5_3:3254586-3254605 Msa0792170:intron 35.0%
! AAAGTATATTGCTGGATTGG+AGG - chr5_3:3254676-3254695 None:intergenic 35.0%
! AGATGTTACCTTCTTTGAAG+AGG + chr5_3:3254698-3254717 Msa0792170:intron 35.0%
ATATGATGCCTCTTCAAAGA+AGG - chr5_3:3254709-3254728 None:intergenic 35.0%
TTTATATCCCTTGAACCCAT+CGG + chr5_3:3254800-3254819 Msa0792170:intron 35.0%
GAAACCTCTCATTATGCAAA+TGG + chr5_3:3254871-3254890 Msa0792170:intron 35.0%
CATTCCATTTGCATAATGAG+AGG - chr5_3:3254878-3254897 None:intergenic 35.0%
AGTATGAAAATCGTTGGAGT+CGG - chr5_3:3254956-3254975 None:intergenic 35.0%
! CGATTTTCATACTGTTGATC+TGG + chr5_3:3254963-3254982 Msa0792170:intron 35.0%
! TGTCTTTTGTCTTTCTTCCT+AGG + chr5_3:3255045-3255064 Msa0792170:intron 35.0%
!! TCTTCCTAGGAATTTTAGTG+AGG + chr5_3:3255058-3255077 Msa0792170:intron 35.0%
!! ACTATTTTTCTTGGGGAAAG+AGG - chr5_3:3255158-3255177 None:intergenic 35.0%
! AATTGAAGACATCTAGGGTA+CGG - chr5_3:3255359-3255378 None:intergenic 35.0%
TTCTTGGTATGGCAACTATT+TGG + chr5_3:3255383-3255402 Msa0792170:intron 35.0%
! ACTAAAGGTTTGTCGCTTAA+GGG + chr5_3:3255488-3255507 Msa0792170:intron 35.0%
AAGTTGTAGCGATCTCTTTA+TGG + chr5_3:3255529-3255548 Msa0792170:intron 35.0%
TTTAACTCTCCCCAAGTTTA+TGG - chr5_3:3255774-3255793 None:intergenic 35.0%
GAGATAGCTTATTCAGAGAA+TGG + chr5_3:3255809-3255828 Msa0792170:intron 35.0%
! TTTTCTGTTAACATCCACGA+GGG - chr5_3:3255906-3255925 None:intergenic 35.0%
TCGTGGATGTTAACAGAAAA+GGG + chr5_3:3255906-3255925 Msa0792170:intron 35.0%
AACAGAAAAGGGAAATTGGT+TGG + chr5_3:3255917-3255936 Msa0792170:intron 35.0%
!! CATAAGAGTACTTTGGATCA+AGG + chr5_3:3256071-3256090 Msa0792170:intron 35.0%
AAGACAATGGAAATGCATTG+TGG + chr5_3:3256105-3256124 Msa0792170:intron 35.0%
AGACAATGGAAATGCATTGT+GGG + chr5_3:3256106-3256125 Msa0792170:intron 35.0%
TGGGATATTCTGATGTAGAT+TGG + chr5_3:3256125-3256144 Msa0792170:intron 35.0%
GGGATATTCTGATGTAGATT+GGG + chr5_3:3256126-3256145 Msa0792170:intron 35.0%
ATTAGGTTTGATGCAATGTG+AGG - chr5_3:3256385-3256404 None:intergenic 35.0%
! TGAAATGATGGGATCATGTA+AGG + chr5_3:3256701-3256720 Msa0792170:intron 35.0%
TACTAACTACAACAGAGAAG+TGG - chr5_3:3256782-3256801 None:intergenic 35.0%
! TACAGATCCACTTCTTTTCA+AGG + chr5_3:3256862-3256881 Msa0792170:intron 35.0%
CAATCTACCTTGAAAAGAAG+TGG - chr5_3:3256872-3256891 None:intergenic 35.0%
! TATCAGATAACTTTTGCCTC+AGG - chr5_3:3256939-3256958 None:intergenic 35.0%
AGTTGAAACCCTTAACATCA+TGG + chr5_3:3257094-3257113 Msa0792170:three_prime_UTR 35.0%
GTTATCAGCCATGATGTTAA+GGG - chr5_3:3257105-3257124 None:intergenic 35.0%
AGTTATCAGCCATGATGTTA+AGG - chr5_3:3257106-3257125 None:intergenic 35.0%
TAGTTAGGTAGATGAGGAAG+AGG + chr5_3:3251303-3251322 Msa0792170:five_prime_UTR 40.0%
AGTTAGGTAGATGAGGAAGA+GGG + chr5_3:3251304-3251323 Msa0792170:five_prime_UTR 40.0%
!!! ATTCTTCTTGCTGCTGCTTT+TGG - chr5_3:3251499-3251518 None:intergenic 40.0%
TTGGCGTTAGAAGTGATTCT+AGG - chr5_3:3251579-3251598 None:intergenic 40.0%
TTCCTCAAGATATGGAAGGT+AGG + chr5_3:3251612-3251631 Msa0792170:intron 40.0%
TACCTACCTTCCATATCTTG+AGG - chr5_3:3251617-3251636 None:intergenic 40.0%
! TCTCGGCCTTCTTCTTTTTA+CGG - chr5_3:3251765-3251784 None:intergenic 40.0%
!! CAGCTGATTTGTGTAGTAGA+GGG - chr5_3:3251839-3251858 None:intergenic 40.0%
CTCTACTACACAAATCAGCT+GGG + chr5_3:3251838-3251857 Msa0792170:CDS 40.0%
!! GTTGATGGTTACAATGTCTG+TGG + chr5_3:3251907-3251926 Msa0792170:CDS 40.0%
CACCTTTAGTATGCTTAGAG+AGG + chr5_3:3252008-3252027 Msa0792170:CDS 40.0%
GACCTCTCTAAGCATACTAA+AGG - chr5_3:3252013-3252032 None:intergenic 40.0%
GTATTTGATGCCATGATGTC+TGG + chr5_3:3252045-3252064 Msa0792170:CDS 40.0%
TGAGAAAACAATGTCGATGC+CGG - chr5_3:3252097-3252116 None:intergenic 40.0%
!! GTTTCAGCTTTAAAGGAGGA+TGG + chr5_3:3252260-3252279 Msa0792170:CDS 40.0%
!! ATACTCTGGATGTTTTCAGG+GGG + chr5_3:3252555-3252574 Msa0792170:intron 40.0%
ACATGACCATACAGTTAACG+AGG + chr5_3:3252724-3252743 Msa0792170:intron 40.0%
TCTGAACCTCGTTAACTGTA+TGG - chr5_3:3252733-3252752 None:intergenic 40.0%
! GTAGATCAAGGCATCACAAA+AGG + chr5_3:3252855-3252874 Msa0792170:intron 40.0%
AAGAGATGCTTCAAGAGCAA+AGG + chr5_3:3252884-3252903 Msa0792170:CDS 40.0%
TGCACAGGCAATTAATACAC+AGG - chr5_3:3253006-3253025 None:intergenic 40.0%
! TTATGGCAGAACTTTTCTGC+AGG - chr5_3:3253175-3253194 None:intergenic 40.0%
TTCACCTATTGCTTGAACCA+GGG - chr5_3:3253410-3253429 None:intergenic 40.0%
TTTCACCTATTGCTTGAACC+AGG - chr5_3:3253411-3253430 None:intergenic 40.0%
ACTGCCTTCAACCATTAATC+TGG + chr5_3:3253546-3253565 Msa0792170:intron 40.0%
GTCACCAGATTAATGGTTGA+AGG - chr5_3:3253553-3253572 None:intergenic 40.0%
! GTGATTGGTCACCAGATTAA+TGG - chr5_3:3253560-3253579 None:intergenic 40.0%
!! GGCTCTAAATTACTTGTCCA+AGG + chr5_3:3253639-3253658 Msa0792170:intron 40.0%
GAGGAAAGTCTTGATGCAAT+GGG - chr5_3:3254098-3254117 None:intergenic 40.0%
AGAGGAAAGTCTTGATGCAA+TGG - chr5_3:3254099-3254118 None:intergenic 40.0%
AAGACGAATAAGGGACAAAG+AGG - chr5_3:3254117-3254136 None:intergenic 40.0%
TGTTGGTACATGTCATTGGT+AGG - chr5_3:3254250-3254269 None:intergenic 40.0%
GTGAAGTCAGTTACATCTGT+TGG - chr5_3:3254315-3254334 None:intergenic 40.0%
CGACACTTGATTCACTTGTT+GGG - chr5_3:3254398-3254417 None:intergenic 40.0%
CCAACAAGTGAATCAAGTGT+CGG + chr5_3:3254396-3254415 Msa0792170:intron 40.0%
CTAACATCCATGACAGATTG+TGG - chr5_3:3254436-3254455 None:intergenic 40.0%
CCCTCATTTGGATGTTTAAG+TGG + chr5_3:3254585-3254604 Msa0792170:intron 40.0%
CCCACTTAAACATCCAAATG+AGG - chr5_3:3254589-3254608 None:intergenic 40.0%
! ATTGCTGGATTGGAGGAATT+AGG - chr5_3:3254669-3254688 None:intergenic 40.0%
ATAATGAGAGGTTTCTGCTG+AGG - chr5_3:3254866-3254885 None:intergenic 40.0%
TGCAAATGGAATGTCATTCG+AGG + chr5_3:3254885-3254904 Msa0792170:intron 40.0%
GTATGAAAATCGTTGGAGTC+GGG - chr5_3:3254955-3254974 None:intergenic 40.0%
AGAGCCTCACTAAAATTCCT+AGG - chr5_3:3255065-3255084 None:intergenic 40.0%
GGCTCTCTCAATTGAGTTAA+AGG + chr5_3:3255079-3255098 Msa0792170:intron 40.0%
! CCAACAACAGTTTTTCGTCA+GGG - chr5_3:3255215-3255234 None:intergenic 40.0%
! TCCAACAACAGTTTTTCGTC+AGG - chr5_3:3255216-3255235 None:intergenic 40.0%
AAAGCTCGTGAACTGCAAAA+AGG + chr5_3:3255290-3255309 Msa0792170:intron 40.0%
GTATGGCAACTATTTGGCAT+TGG + chr5_3:3255389-3255408 Msa0792170:intron 40.0%
CTTAAGCGACAAACCTTTAG+TGG - chr5_3:3255489-3255508 None:intergenic 40.0%
! CACTAAAGGTTTGTCGCTTA+AGG + chr5_3:3255487-3255506 Msa0792170:intron 40.0%
! CTAAAGGTTTGTCGCTTAAG+GGG + chr5_3:3255489-3255508 Msa0792170:intron 40.0%
! TTTGTCGCTTAAGGGGATTA+AGG + chr5_3:3255496-3255515 Msa0792170:intron 40.0%
!! TGCAATCATTTGGTGTGACT+TGG + chr5_3:3255599-3255618 Msa0792170:intron 40.0%
! CTTTTCTGTTAACATCCACG+AGG - chr5_3:3255907-3255926 None:intergenic 40.0%
CTCGTGGATGTTAACAGAAA+AGG + chr5_3:3255905-3255924 Msa0792170:intron 40.0%
! ATTGGTTGGTTCAAGAGACT+AGG + chr5_3:3255931-3255950 Msa0792170:intron 40.0%
AGAGACTAGGTGGTAAATGT+AGG + chr5_3:3255944-3255963 Msa0792170:intron 40.0%
ACTCATCATGTTAACTGCGA+AGG - chr5_3:3256000-3256019 None:intergenic 40.0%
! TGAAACTGTTACTTCACGAG+TGG + chr5_3:3256308-3256327 Msa0792170:intron 40.0%
CTTTAACAGATCCTACCGAT+TGG + chr5_3:3256817-3256836 Msa0792170:intron 40.0%
TAGTAAGCAAACCAATCGGT+AGG - chr5_3:3256831-3256850 None:intergenic 40.0%
CAATCTTGATGCAGAAGTAG+TGG + chr5_3:3256900-3256919 Msa0792170:CDS 40.0%
!!! TTTTGTGTGGTTCTGGCCTT+CGG - chr5_3:3251236-3251255 None:intergenic 45.0%
TAGATGAGGAAGAGGGATGA+TGG + chr5_3:3251311-3251330 Msa0792170:five_prime_UTR 45.0%
! ATTCTAGGAGGAGTTGGAGT+TGG - chr5_3:3251564-3251583 None:intergenic 45.0%
! GAAGTGATTCTAGGAGGAGT+TGG - chr5_3:3251570-3251589 None:intergenic 45.0%
GCGTTAGAAGTGATTCTAGG+AGG - chr5_3:3251576-3251595 None:intergenic 45.0%
ACCTTCGCTTCCTCAAGATA+TGG + chr5_3:3251604-3251623 Msa0792170:CDS 45.0%
TCCATATCTTGAGGAAGCGA+AGG - chr5_3:3251608-3251627 None:intergenic 45.0%
TCGCTTCCTCAAGATATGGA+AGG + chr5_3:3251608-3251627 Msa0792170:CDS 45.0%
!!! GAGTGCTGGATTTTCGCTTT+TGG - chr5_3:3251723-3251742 None:intergenic 45.0%
CGGTAACTAGTTGAAGGTCT+TGG - chr5_3:3251745-3251764 None:intergenic 45.0%
AAAGAAGAAGGCCGAGAAAG+AGG + chr5_3:3251768-3251787 Msa0792170:CDS 45.0%
ATCCGCAAGATCCTCTTTCT+CGG - chr5_3:3251782-3251801 None:intergenic 45.0%
GATCACGATAGAGGTCAGTT+TGG - chr5_3:3251807-3251826 None:intergenic 45.0%
AGGTTGTTGGATCACGATAG+AGG - chr5_3:3251816-3251835 None:intergenic 45.0%
! CTGATTTGTGTAGTAGAGGG+AGG - chr5_3:3251836-3251855 None:intergenic 45.0%
!! CCAGCTGATTTGTGTAGTAG+AGG - chr5_3:3251840-3251859 None:intergenic 45.0%
CCTCTACTACACAAATCAGC+TGG + chr5_3:3251837-3251856 Msa0792170:CDS 45.0%
TACACAAATCAGCTGGGTCT+TGG + chr5_3:3251844-3251863 Msa0792170:CDS 45.0%
ACACAAATCAGCTGGGTCTT+GGG + chr5_3:3251845-3251864 Msa0792170:CDS 45.0%
!! GTCCCTGTTTTGCTTGTTGA+TGG + chr5_3:3251892-3251911 Msa0792170:CDS 45.0%
ATTGGGGAATCCAGACATCA+TGG - chr5_3:3252058-3252077 None:intergenic 45.0%
CTGATGCATCTGCTGATACA+TGG + chr5_3:3252118-3252137 Msa0792170:CDS 45.0%
TGTCAACAACAAGCAGCACA+TGG + chr5_3:3252317-3252336 Msa0792170:CDS 45.0%
! GATCAAGGCATCACAAAAGG+AGG + chr5_3:3252858-3252877 Msa0792170:intron 45.0%
! TATTGCGTCTCAAGTTGCAC+AGG - chr5_3:3253021-3253040 None:intergenic 45.0%
ATGAGCAATTGTAGTGGTGG+AGG - chr5_3:3253461-3253480 None:intergenic 45.0%
GGTATGAGCAATTGTAGTGG+TGG - chr5_3:3253464-3253483 None:intergenic 45.0%
GTCGGTATGAGCAATTGTAG+TGG - chr5_3:3253467-3253486 None:intergenic 45.0%
! TCTGGAACAGTTAAAGGCGT+GGG - chr5_3:3253755-3253774 None:intergenic 45.0%
! ATCTGGAACAGTTAAAGGCG+TGG - chr5_3:3253756-3253775 None:intergenic 45.0%
CTATCTGTAGAGATCTCCCA+TGG + chr5_3:3253856-3253875 Msa0792170:intron 45.0%
TACTGAGAGACTCAGTAGCA+GGG - chr5_3:3253886-3253905 None:intergenic 45.0%
ATACTGAGAGACTCAGTAGC+AGG - chr5_3:3253887-3253906 None:intergenic 45.0%
! GATTCACTTGTTGGGTGTGA+GGG - chr5_3:3254390-3254409 None:intergenic 45.0%
! TGATTCACTTGTTGGGTGTG+AGG - chr5_3:3254391-3254410 None:intergenic 45.0%
CCGACACTTGATTCACTTGT+TGG - chr5_3:3254399-3254418 None:intergenic 45.0%
!! ACAAGTGAATCAAGTGTCGG+TGG + chr5_3:3254399-3254418 Msa0792170:intron 45.0%
GAAAACGCCACAATCTGTCA+TGG + chr5_3:3254426-3254445 Msa0792170:intron 45.0%
AGATCTTCCAGCATCCACAA+TGG + chr5_3:3254558-3254577 Msa0792170:intron 45.0%
CGGGAACAATCATCTCATCA+TGG - chr5_3:3255109-3255128 None:intergenic 45.0%
TTCCACATGTCGTTATACGC+GGG - chr5_3:3255128-3255147 None:intergenic 45.0%
GTTCCACATGTCGTTATACG+CGG - chr5_3:3255129-3255148 None:intergenic 45.0%
CCCTGACGAAAAACTGTTGT+TGG + chr5_3:3255212-3255231 Msa0792170:intron 45.0%
TTCACGATGACAAGGAAGGA+AGG - chr5_3:3255443-3255462 None:intergenic 45.0%
CTTCTTCACGATGACAAGGA+AGG - chr5_3:3255447-3255466 None:intergenic 45.0%
GTCTCTTCTTCACGATGACA+AGG - chr5_3:3255451-3255470 None:intergenic 45.0%
CTTATTCAGAGAATGGCACG+CGG + chr5_3:3255816-3255835 Msa0792170:intron 45.0%
GGGTTGTTGTGTGAAGACAA+TGG + chr5_3:3256092-3256111 Msa0792170:intron 45.0%
GTGGGTGATTGATTGTGCTT+AGG + chr5_3:3256634-3256653 Msa0792170:intron 45.0%
!! ATAAATTAAATAAATAAGTA+AGG - chr5_3:3251640-3251659 None:intergenic 5.0%
! ATGAGGAAGAGGGATGATGG+AGG + chr5_3:3251314-3251333 Msa0792170:five_prime_UTR 50.0%
!!! CTTCTTGCTGCTGCTTTTGG+AGG - chr5_3:3251496-3251515 None:intergenic 50.0%
GAGGAAGCGAAGGTTCTGTT+TGG - chr5_3:3251598-3251617 None:intergenic 50.0%
AGTTGAAGGTCTTGGAGTGC+TGG - chr5_3:3251737-3251756 None:intergenic 50.0%
GTGTAGTAGAGGGAGGTTGT+TGG - chr5_3:3251829-3251848 None:intergenic 50.0%
CACAAATCAGCTGGGTCTTG+GGG + chr5_3:3251846-3251865 Msa0792170:CDS 50.0%
ACAAATCAGCTGGGTCTTGG+GGG + chr5_3:3251847-3251866 Msa0792170:CDS 50.0%
GTCTGGATTCCCCAATCACA+AGG + chr5_3:3252062-3252081 Msa0792170:CDS 50.0%
AAGTGACGACCCAGACTTTG+GGG - chr5_3:3252289-3252308 None:intergenic 50.0%
GAAGTGACGACCCAGACTTT+GGG - chr5_3:3252290-3252309 None:intergenic 50.0%
AGAAGTGACGACCCAGACTT+TGG - chr5_3:3252291-3252310 None:intergenic 50.0%
!! GTTTTCAGGGGGCCTTTGTT+TGG + chr5_3:3252566-3252585 Msa0792170:intron 50.0%
TGCCTTGCTGCTCCAAACAA+AGG - chr5_3:3252581-3252600 None:intergenic 50.0%
! TGTTTGGAGCAGCAAGGCAT+TGG + chr5_3:3252582-3252601 Msa0792170:CDS 50.0%
CTATTGCTTGAACCAGGGCT+AGG - chr5_3:3253405-3253424 None:intergenic 50.0%
CTAGCCCTGGTTCAAGCAAT+AGG + chr5_3:3253403-3253422 Msa0792170:intron 50.0%
TGCTTCATGCCCTATGCCAA+TGG - chr5_3:3253825-3253844 None:intergenic 50.0%
TCAGTAGCAGGGCATACCAT+GGG - chr5_3:3253875-3253894 None:intergenic 50.0%
GATGCAATGGGTACGTAGCT+TGG - chr5_3:3254086-3254105 None:intergenic 50.0%
!! TGAATCAAGTGTCGGTGGTG+AGG + chr5_3:3254404-3254423 Msa0792170:intron 50.0%
CAAATGAGGGAGCTCCATTG+TGG - chr5_3:3254575-3254594 None:intergenic 50.0%
CACAATGGAGCTCCCTCATT+TGG + chr5_3:3254573-3254592 Msa0792170:intron 50.0%
ATATCCCTTGAACCCATCGG+CGG + chr5_3:3254803-3254822 Msa0792170:intron 50.0%
!! GTCTTCTAGAATCCGCCGAT+GGG - chr5_3:3254818-3254837 None:intergenic 50.0%
!! AGTCTTCTAGAATCCGCCGA+TGG - chr5_3:3254819-3254838 None:intergenic 50.0%
TTCCCGCGTATAACGACATG+TGG + chr5_3:3255123-3255142 Msa0792170:intron 50.0%
ATTGAAATCCTGGACCCTCG+TGG + chr5_3:3255889-3255908 Msa0792170:intron 50.0%
! GGTTGGTTCAAGAGACTAGG+TGG + chr5_3:3255934-3255953 Msa0792170:intron 50.0%
!!! AGTTTTTTGGTCGGGTGTGC+AGG + chr5_3:3256240-3256259 Msa0792170:intron 50.0%
!! TGGATGCTCTGAAGAACCTG+AGG + chr5_3:3256920-3256939 Msa0792170:CDS 50.0%
! CAGCGATTTTGCATTCCCAC+AGG - chr5_3:3257274-3257293 None:intergenic 50.0%
!!! CTTGCTGCTGCTTTTGGAGG+AGG - chr5_3:3251493-3251512 None:intergenic 55.0%
GGAGGAGTTGGAGTTGGAGT+TGG - chr5_3:3251558-3251577 None:intergenic 55.0%
GGCCGAGAAAGAGGATCTTG+CGG + chr5_3:3251777-3251796 Msa0792170:CDS 55.0%
AGGATGGTTGCCCCAAAGTC+TGG + chr5_3:3252276-3252295 Msa0792170:CDS 55.0%
GGATGGTTGCCCCAAAGTCT+GGG + chr5_3:3252277-3252296 Msa0792170:CDS 55.0%
! GGCCTTTGTTTGGAGCAGCA+AGG + chr5_3:3252576-3252595 Msa0792170:CDS 55.0%
!! CAGCAAGGCATTGGTAACCG+AGG + chr5_3:3252591-3252610 Msa0792170:CDS 55.0%
TAGAGAAACCCACCTAGCCC+TGG + chr5_3:3253390-3253409 Msa0792170:intron 55.0%
TGCTTGAACCAGGGCTAGGT+GGG - chr5_3:3253401-3253420 None:intergenic 55.0%
TTGCTTGAACCAGGGCTAGG+TGG - chr5_3:3253402-3253421 None:intergenic 55.0%
CTCAGTAGCAGGGCATACCA+TGG - chr5_3:3253876-3253895 None:intergenic 55.0%
CTTGTTGGGTGTGAGGGTCA+AGG - chr5_3:3254384-3254403 None:intergenic 55.0%
! GAATCCGCCGATGGGTTCAA+GGG - chr5_3:3254810-3254829 None:intergenic 55.0%
! AGAATCCGCCGATGGGTTCA+AGG - chr5_3:3254811-3254830 None:intergenic 55.0%
GTTAACATCCACGAGGGTCC+AGG - chr5_3:3255900-3255919 None:intergenic 55.0%
!!! GCTGCTTTTGGAGGAGGAGG+AGG - chr5_3:3251487-3251506 None:intergenic 60.0%
!!! GCTGCTGCTTTTGGAGGAGG+AGG - chr5_3:3251490-3251509 None:intergenic 60.0%
TGGGTGTGAGGGTCAAGGTG+TGG - chr5_3:3254379-3254398 None:intergenic 60.0%
GGGAGCTCCATTGTGGATGC+TGG - chr5_3:3254568-3254587 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 3251219 3257332 3251219 ID=Msa0792170;Name=Msa0792170
chr5_3 mRNA 3251219 3257332 3251219 ID=Msa0792170-mRNA-1;Parent=Msa0792170;Name=Msa0792170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=129|1|1|1|1|1|6|360|331
chr5_3 exon 3251219 3251629 3251219 ID=Msa0792170-mRNA-1:exon:1394;Parent=Msa0792170-mRNA-1
chr5_3 exon 3251715 3252152 3251715 ID=Msa0792170-mRNA-1:exon:1395;Parent=Msa0792170-mRNA-1
chr5_3 exon 3252260 3252343 3252260 ID=Msa0792170-mRNA-1:exon:1396;Parent=Msa0792170-mRNA-1
chr5_3 exon 3252574 3252612 3252574 ID=Msa0792170-mRNA-1:exon:1397;Parent=Msa0792170-mRNA-1
chr5_3 exon 3252859 3252905 3252859 ID=Msa0792170-mRNA-1:exon:1398;Parent=Msa0792170-mRNA-1
chr5_3 exon 3256867 3257332 3256867 ID=Msa0792170-mRNA-1:exon:1399;Parent=Msa0792170-mRNA-1
chr5_3 five_prime_UTR 3251219 3251347 3251219 ID=Msa0792170-mRNA-1:five_prime_utr;Parent=Msa0792170-mRNA-1
chr5_3 CDS 3251348 3251629 3251348 ID=Msa0792170-mRNA-1:cds;Parent=Msa0792170-mRNA-1
chr5_3 CDS 3251715 3252152 3251715 ID=Msa0792170-mRNA-1:cds;Parent=Msa0792170-mRNA-1
chr5_3 CDS 3252260 3252343 3252260 ID=Msa0792170-mRNA-1:cds;Parent=Msa0792170-mRNA-1
chr5_3 CDS 3252574 3252612 3252574 ID=Msa0792170-mRNA-1:cds;Parent=Msa0792170-mRNA-1
chr5_3 CDS 3252859 3252905 3252859 ID=Msa0792170-mRNA-1:cds;Parent=Msa0792170-mRNA-1
chr5_3 CDS 3256867 3256972 3256867 ID=Msa0792170-mRNA-1:cds;Parent=Msa0792170-mRNA-1
chr5_3 three_prime_UTR 3256973 3257332 3256973 ID=Msa0792170-mRNA-1:three_prime_utr;Parent=Msa0792170-mRNA-1
Gene Sequence

>Msa0792170

ATGAAGATGAAACTGAAATTAGTTCCATTATCATCATCTTGTTCGTTAGCAGCTGCTGCAGTACTGTGTGATTCCAATTCCAATTACAATTACAATAAGAAGAAGAGACACAGCAGTATGAATATGATAGTATACTCCTCCTCCTCCTCCAAAAGCAGCAGCAAGAAGAATGATTCTTCTAATTCTAATTCTAATTCTAATTCTCAACCAACTCCAACTCCAACTCCTCCTAGAATCACTTCTAACGCCAAACAGAACCTTCGCTTCCTCAAGATATGGAAGGAGTACCAAAAGCGAAAATCCAGCACTCCAAGACCTTCAACTAGTTACCGTAAAAAGAAGAAGGCCGAGAAAGAGGATCTTGCGGATGACCAAACTGACCTCTATCGTGATCCAACAACCTCCCTCTACTACACAAATCAGCTGGGTCTTGGGGGTTTAATTGACAATGCTGCTGCTGTCCCTGTTTTGCTTGTTGATGGTTACAATGTCTGTGGATATTGGATGAAACTCAAAAAACATTTTCTCAATGGCAAACTTGAACTTGCTCGCCAGAAGCTTATTGACGAACTTATCACCTTTAGTATGCTTAGAGAGGTCAAAGTCGTTGTTGTATTTGATGCCATGATGTCTGGATTCCCCAATCACAAGGAATATTCTTCCGGCATCGACATTGTTTTCTCAACTGATGCATCTGCTGATACATGGATTGAAAAAGAGGTTTCAGCTTTAAAGGAGGATGGTTGCCCCAAAGTCTGGGTCGTCACTTCTGATCACTGTCAACAACAAGCAGCACATGGAGCAGGGGCCTTTGTTTGGAGCAGCAAGGCATTGGTAACCGAGATCAAGGCATCACAAAAGGAGGTTGAAGAGATGCTTCAAGAGCAAAGATCCACTTCTTTTCAAGGTAGATTGTTGAAGCACAATCTTGATGCAGAAGTAGTGGATGCTCTGAAGAACCTGAGGCAAAAGTTATCTGATAATGAGTTGAAGTAA

Protein sequence

>Msa0792170

MKMKLKLVPLSSSCSLAAAAVLCDSNSNYNYNKKKRHSSMNMIVYSSSSSKSSSKKNDSSNSNSNSNSQPTPTPTPPRITSNAKQNLRFLKIWKEYQKRKSSTPRPSTSYRKKKKAEKEDLADDQTDLYRDPTTSLYYTNQLGLGGLIDNAAAVPVLLVDGYNVCGYWMKLKKHFLNGKLELARQKLIDELITFSMLREVKVVVVFDAMMSGFPNHKEYSSGIDIVFSTDASADTWIEKEVSALKEDGCPKVWVVTSDHCQQQAAHGAGAFVWSSKALVTEIKASQKEVEEMLQEQRSTSFQGRLLKHNLDAEVVDALKNLRQKLSDNELK*