AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377880 MtrunA17_Chr3g0130121 97.232 542 8 2 6 547 3 537 0.0 1078
Msa0377880 MtrunA17_Chr4g0030381 35.222 406 241 7 136 537 92 479 8.85e-80 259
Msa0377880 MtrunA17_Chr8g0387311 28.961 587 312 12 26 537 18 574 8.48e-79 259
Msa0377880 MtrunA17_Chr8g0373811 30.637 408 252 6 138 537 137 521 9.90e-69 231
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377880 AT2G13690.1 54.495 545 211 9 12 541 18 540 0.0 560
Msa0377880 AT5G60050.1 33.021 427 258 9 117 537 79 483 1.89e-78 255
Msa0377880 AT1G63850.1 32.195 410 250 5 138 540 142 530 1.75e-72 241
Msa0377880 AT3G50780.1 32.918 401 242 5 138 537 126 500 1.04e-63 217
Msa0377880 AT3G50780.2 32.918 401 242 5 138 537 126 500 1.04e-63 217

Find 188 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAGGCGATTTAATTTA+TGG 0.119562 3_1:+78558177 None:intergenic
ATGATCTACGCCACCAAATT+TGG 0.161834 3_1:+78555963 None:intergenic
TAAGCAAAGCATTCCAAATT+TGG 0.169661 3_1:-78555976 Msa0377880:CDS
GGTTTGATGGGTGGGTTATC+TGG 0.170879 3_1:+78557949 None:intergenic
AAAGTGTGTTGTTGCTTTAA+AGG 0.172834 3_1:+78556052 None:intergenic
GAAAGTGGTGGGCTTGGATA+TGG 0.206424 3_1:+78557900 None:intergenic
TATGGGGAAGAGTGTGGTTT+TGG 0.233151 3_1:+78558195 None:intergenic
AGTTAGTTAGAGAGAGAAAA+TGG 0.235982 3_1:-78558055 Msa0377880:exon
TTCAATAATCAATACCATTT+AGG 0.253682 3_1:+78555737 None:intergenic
ACATTCGGCTGGGAATCTTC+TGG 0.254028 3_1:+78556670 None:intergenic
TTGGAGCTTTGAGGGGAGTT+TGG 0.259791 3_1:+78557865 None:intergenic
GGTTCCTGAAGTTGATAATT+TGG 0.260783 3_1:-78557449 Msa0377880:CDS
CTTGGATATGGGTTCGGACT+TGG 0.266293 3_1:+78557912 None:intergenic
CGGACTTGGGATTGGGCTTA+CGG 0.272463 3_1:+78557926 None:intergenic
CAGAAAAGGGCTTGATATAA+AGG 0.277618 3_1:-78556113 Msa0377880:CDS
AGCAATGCGGGTGCTGGATT+TGG 0.283745 3_1:+78557846 None:intergenic
TTAAGCTTTGGCTTTGGCTT+TGG 0.300767 3_1:+78558273 None:intergenic
TTCATCGGCGGCGGTGGAAT+TGG 0.302520 3_1:+78557682 None:intergenic
TTGGCAGGTTAATTCCTAAA+TGG 0.306856 3_1:-78555751 Msa0377880:three_prime_UTR
AATCCAATCACAAACGAAAA+TGG 0.308512 3_1:-78558324 Msa0377880:five_prime_UTR
GGACTTGGGATTGGGCTTAC+GGG 0.315616 3_1:+78557927 None:intergenic
CCGTGTAAAGATTTGCAATT+AGG 0.321222 3_1:-78555830 Msa0377880:three_prime_UTR
TATTGATACTGTCAGAATCT+TGG 0.325615 3_1:+78555881 None:intergenic
GCAACAACACACTTTGTTCA+TGG 0.330171 3_1:-78556044 Msa0377880:CDS
GGCTTACGGGGTTTGATGGG+TGG 0.331446 3_1:+78557940 None:intergenic
ATTGGGCTTACGGGGTTTGA+TGG 0.341366 3_1:+78557936 None:intergenic
AAAGTGATTGTTGTTGGAAT+TGG 0.342280 3_1:+78558159 None:intergenic
GGAGGAGAAAGTGGTGGGCT+TGG 0.344326 3_1:+78557894 None:intergenic
CTCTCTGATCAGCCTCTTTG+AGG 0.349492 3_1:-78556482 Msa0377880:CDS
ATGGGTTCGGACTTGGGATT+GGG 0.351329 3_1:+78557919 None:intergenic
TTTGTAAAAGTGATTGTTGT+TGG 0.356174 3_1:+78558153 None:intergenic
GAGTTGAAATCACTAGTTAA+AGG 0.356295 3_1:-78556592 Msa0377880:CDS
CCTGCCAATACAACACTCTA+TGG 0.360064 3_1:+78555766 None:intergenic
GGTGGGTTATCTGGGCTTGA+AGG 0.362443 3_1:+78557958 None:intergenic
GTGCTGGATTTGGAGCTTTG+AGG 0.362532 3_1:+78557856 None:intergenic
TATGGGTTCGGACTTGGGAT+TGG 0.363847 3_1:+78557918 None:intergenic
TGCTGGATTTGGAGCTTTGA+GGG 0.364906 3_1:+78557857 None:intergenic
GGTGGAATTGGAGCGGTAAT+AGG 0.371998 3_1:+78557694 None:intergenic
CATTCGGCTGGGAATCTTCT+GGG 0.375478 3_1:+78556671 None:intergenic
AACGGCGGCAGAGTCTTCTA+TGG 0.375524 3_1:+78557780 None:intergenic
CTAACTAACTAACTAACTAA+TGG 0.376563 3_1:+78558068 None:intergenic
CTATGTTGTTAGACTTTGGC+TGG 0.378576 3_1:-78556147 Msa0377880:CDS
TTGGAGGCGATTTAATTTAT+GGG 0.383990 3_1:+78558178 None:intergenic
TACTCTTTACCTTGATTCAA+TGG 0.384352 3_1:+78555916 None:intergenic
GCTTTGAGGGGAGTTTGGTA+TGG 0.385704 3_1:+78557870 None:intergenic
TGGCTGCAGAGATGCAGAAA+AGG 0.389977 3_1:-78556127 Msa0377880:CDS
GTTCCTGAAGTTGATAATTT+GGG 0.394094 3_1:-78557448 Msa0377880:CDS
ATTGATACTGTCAGAATCTT+GGG 0.394689 3_1:+78555882 None:intergenic
GTTTGCTTAAGCTTTGGCTT+TGG 0.398846 3_1:+78558267 None:intergenic
AGCGGTTCTGTTTGTTGCCA+TGG 0.400271 3_1:-78556233 Msa0377880:CDS
ACACCCAAATTATCAACTTC+AGG 0.405729 3_1:+78557445 None:intergenic
GTTTGATGGGTGGGTTATCT+GGG 0.407957 3_1:+78557950 None:intergenic
GCTAAAAGACTTCTCAATAT+CGG 0.408077 3_1:-78557382 Msa0377880:CDS
CCCTCGCCGGATCTTATCTC+CGG 0.408941 3_1:-78557815 Msa0377880:CDS
TCTATGGGAGAGACTCTTCC+CGG 0.409081 3_1:+78557796 None:intergenic
TTGGATATGGGTTCGGACTT+GGG 0.414993 3_1:+78557913 None:intergenic
TGGAATGCTTTGCTTAGATT+AGG 0.420028 3_1:+78555983 None:intergenic
CAAGGTAAAGAGTATCTGTT+AGG 0.421464 3_1:-78555907 Msa0377880:exon
TTGAGGGGAGTTTGGTATGG+AGG 0.423913 3_1:+78557873 None:intergenic
GATCCGAGCAATGCGGGTGC+TGG 0.424705 3_1:+78557840 None:intergenic
TCACCTATGTTGTTAGACTT+TGG 0.425477 3_1:-78556151 Msa0377880:CDS
TTGTGTCACTAGGTGTCTGC+AGG 0.433374 3_1:-78556850 Msa0377880:intron
GAAACTACGAGGGACATTCT+AGG 0.434329 3_1:-78556712 Msa0377880:CDS
TTTCAACTCATTTCTTGCAT+TGG 0.435190 3_1:+78556606 None:intergenic
TCTTCTTCCTCTTCTGTCCA+AGG 0.435939 3_1:+78556775 None:intergenic
TGCCGGTTGGAAGCTAGATC+AGG 0.436649 3_1:-78556193 Msa0377880:CDS
ACCGGAGAGGGGTTGTGATC+GGG 0.440559 3_1:+78557757 None:intergenic
AGCCTCAAGGTATTGTAAAC+AGG 0.444041 3_1:+78556801 None:intergenic
GCGGAGTTCATCGGCGGCGG+TGG 0.444320 3_1:+78557676 None:intergenic
CTTGAGATGTGTTCAATCAT+CGG 0.448853 3_1:+78556406 None:intergenic
AATACCTTGAGGCTGTTCCT+TGG 0.452602 3_1:-78556792 Msa0377880:CDS
AAAGTGGTGGGCTTGGATAT+GGG 0.452627 3_1:+78557901 None:intergenic
TTGTTGGAAATCATGCTTGA+TGG 0.457343 3_1:-78556361 Msa0377880:CDS
AATAGAGATCGTCTTTGCTT+AGG 0.458824 3_1:+78556527 None:intergenic
CGAAAGAGCAACACCATGTT+CGG 0.462705 3_1:+78557989 None:intergenic
CCATAGAGTGTTGTATTGGC+AGG 0.464323 3_1:-78555766 Msa0377880:three_prime_UTR
TGGTATGGAGGAGGAGAAAG+TGG 0.466478 3_1:+78557885 None:intergenic
TGATAACATCAACTGGTTGT+TGG 0.467994 3_1:-78556377 Msa0377880:CDS
GACAGGTTGATAACATCAAC+TGG 0.468787 3_1:-78556384 Msa0377880:CDS
AGGGGAGTTTGGTATGGAGG+AGG 0.468937 3_1:+78557876 None:intergenic
GTTAATTGCGGATTATAGAA+AGG 0.469473 3_1:-78557530 Msa0377880:CDS
ATCTCCATAGAGTGTTGTAT+TGG 0.475427 3_1:-78555770 Msa0377880:three_prime_UTR
TGTCAACCTTTCAGGATTGA+CGG 0.479755 3_1:+78556447 None:intergenic
AGTAACCTCTAAAACATCAA+TGG 0.487626 3_1:+78557348 None:intergenic
AACACACTTTGTTCATGGAA+TGG 0.488024 3_1:-78556039 Msa0377880:CDS
CGTCTTTGCTTAGGTCAAGA+TGG 0.489915 3_1:+78556536 None:intergenic
TAACAAAATGTGTAGAATTG+AGG 0.490736 3_1:-78557470 Msa0377880:CDS
TCTTCGAGTGGTGGTGGTGG+TGG 0.490921 3_1:-78557502 Msa0377880:CDS
GTGATTGTTGTTGGAATTGG+AGG 0.491769 3_1:+78558162 None:intergenic
AACCGGAGAGGGGTTGTGAT+CGG 0.492279 3_1:+78557756 None:intergenic
GCTTACGGGGTTTGATGGGT+GGG 0.492706 3_1:+78557941 None:intergenic
TTAATTGCGGATTATAGAAA+GGG 0.494426 3_1:-78557529 Msa0377880:CDS
AGAGGGGTTGTGATCGGGAA+CGG 0.494719 3_1:+78557762 None:intergenic
GGTGGGCTTGGATATGGGTT+CGG 0.495015 3_1:+78557906 None:intergenic
GGGTTATCTGGGCTTGAAGG+TGG 0.495636 3_1:+78557961 None:intergenic
GGCTGCAGAGATGCAGAAAA+GGG 0.496864 3_1:-78556126 Msa0377880:CDS
ATGAGTTTGAGAGGGAAGAA+CGG 0.499789 3_1:-78557616 Msa0377880:CDS
AGGTCTTCTTTGTAAAAGCT+CGG 0.499952 3_1:-78556572 Msa0377880:CDS
GACGGAGGTGAATTGAGAAC+CGG 0.499970 3_1:+78557739 None:intergenic
TTGGGCTTACGGGGTTTGAT+GGG 0.505700 3_1:+78557937 None:intergenic
CTGAGTTCATATCTAACCAT+AGG 0.505938 3_1:+78556265 None:intergenic
AAACTTATGCCATTGAATCA+AGG 0.507955 3_1:-78555925 Msa0377880:CDS
AATCCAGCACCCGCATTGCT+CGG 0.508267 3_1:-78557843 Msa0377880:CDS
CCACGAGAAAATTGCAATGC+CGG 0.516914 3_1:-78556210 Msa0377880:CDS
AGGGTCGATCCGAGCAATGC+GGG 0.519510 3_1:+78557834 None:intergenic
AATTCTTCGAGTGGTGGTGG+TGG 0.524260 3_1:-78557505 Msa0377880:CDS
CTCTTCCCGGAGATAAGATC+CGG 0.524725 3_1:+78557809 None:intergenic
TCCCGATCACAACCCCTCTC+CGG 0.526835 3_1:-78557758 Msa0377880:CDS
GCACAATAATGCATCCCCTA+TGG 0.529126 3_1:-78556281 Msa0377880:CDS
GCTGGATTTGGAGCTTTGAG+GGG 0.529230 3_1:+78557858 None:intergenic
GAGAAAATTGCAATGCCGGT+TGG 0.529896 3_1:-78556206 Msa0377880:CDS
ACTCCGACGGCGGAGTTCAT+CGG 0.533515 3_1:+78557667 None:intergenic
TATTGATTATTGAATTCTCT+AGG 0.535778 3_1:-78555728 Msa0377880:three_prime_UTR
GATGTCGAGTTACATTCGGC+TGG 0.536456 3_1:+78556659 None:intergenic
GGTAATTCTTCGAGTGGTGG+TGG 0.537316 3_1:-78557508 Msa0377880:CDS
AATGGTTTCACCACTTCTCA+AGG 0.538484 3_1:-78556021 Msa0377880:CDS
ACGGCGGAGTTCATCGGCGG+CGG 0.541307 3_1:+78557673 None:intergenic
ACATAGGTGAAAACCATGCT+TGG 0.541457 3_1:+78556164 None:intergenic
GTCGGAGTCAGTGTCGGAGA+TGG 0.542344 3_1:-78557652 Msa0377880:CDS
AAAGATTTGCAATTAGGTGA+GGG 0.552544 3_1:-78555824 Msa0377880:three_prime_UTR
GCCCTGATCTAGCTTCCAAC+CGG 0.552789 3_1:+78556191 None:intergenic
GGTGAATTGAGAACCGGAGA+GGG 0.552875 3_1:+78557745 None:intergenic
ATGGAGGAGGAGAAAGTGGT+GGG 0.554708 3_1:+78557889 None:intergenic
TGAGTTCATATCTAACCATA+GGG 0.555019 3_1:+78556266 None:intergenic
AACTAACTAACTAATGGATG+TGG 0.555256 3_1:+78558074 None:intergenic
CACATGCACATGATGGTGTA+AGG 0.556207 3_1:+78558114 None:intergenic
ATGTGAGGATGAGTTTGAGA+GGG 0.556266 3_1:-78557624 Msa0377880:CDS
ACGAGATGTCGAGTTACATT+CGG 0.559548 3_1:+78556655 None:intergenic
TTAATTTATGGGGAAGAGTG+TGG 0.559887 3_1:+78558189 None:intergenic
GGCTGTTCCTTGGACAGAAG+AGG 0.566418 3_1:-78556782 Msa0377880:CDS
CCTCGCCGGATCTTATCTCC+GGG 0.568057 3_1:-78557814 Msa0377880:CDS
GCAGGCATTATGTTCACAAA+GGG 0.570442 3_1:-78556832 Msa0377880:CDS
CCTAATTGCAAATCTTTACA+CGG 0.572250 3_1:+78555830 None:intergenic
TAAAGATTTGCAATTAGGTG+AGG 0.577448 3_1:-78555825 Msa0377880:three_prime_UTR
GATCAGGGCTTCTCCAAGCA+TGG 0.578787 3_1:-78556177 Msa0377880:CDS
GATTGAACACATCTCAAGAC+AGG 0.580199 3_1:-78556401 Msa0377880:CDS
GACTTGGGATTGGGCTTACG+GGG 0.582080 3_1:+78557928 None:intergenic
CCTTTCAGGATTGACGGTGT+CGG 0.585675 3_1:+78556453 None:intergenic
GCAAAGCATTCCAAATTTGG+TGG 0.586003 3_1:-78555973 Msa0377880:CDS
CAGCCAAAGTCTAACAACAT+AGG 0.586068 3_1:+78556148 None:intergenic
TTTCACCACTTCTCAAGGCA+TGG 0.586801 3_1:-78556016 Msa0377880:CDS
GATGTGAGGATGAGTTTGAG+AGG 0.587039 3_1:-78557625 Msa0377880:CDS
TGGAGGCGATTTAATTTATG+GGG 0.587171 3_1:+78558179 None:intergenic
AGCAACACCATGTTCGGTGT+CGG 0.587244 3_1:+78557995 None:intergenic
AAGATTTGCAATTAGGTGAG+GGG 0.590623 3_1:-78555823 Msa0377880:three_prime_UTR
CCGCCGATGAACTCCGCCGT+CGG 0.590734 3_1:-78557670 Msa0377880:CDS
ACGGCGGCAGAGTCTTCTAT+GGG 0.600004 3_1:+78557781 None:intergenic
GTCCTGTTTACAATACCTTG+AGG 0.601459 3_1:-78556803 Msa0377880:CDS
CGGAAGCTACGAGATCTTGA+CGG 0.605422 3_1:+78557721 None:intergenic
ATGTCGAGTTACATTCGGCT+GGG 0.606626 3_1:+78556660 None:intergenic
TCTGATCAGCCTCTTTGAGG+AGG 0.606748 3_1:-78556479 Msa0377880:CDS
ATCGACGCCGACACCGAACA+TGG 0.608753 3_1:-78558002 Msa0377880:CDS
TCCGACACTGACTCCGACGG+CGG 0.610110 3_1:+78557657 None:intergenic
TTGCTCGGATCGACCCTCGC+CGG 0.610784 3_1:-78557828 Msa0377880:CDS
CAGTGCCATGCCTTGAGAAG+TGG 0.610868 3_1:+78556011 None:intergenic
GCCGGTTGGAAGCTAGATCA+GGG 0.611000 3_1:-78556192 Msa0377880:CDS
AGAAAGGGTAATTCTTCGAG+TGG 0.615946 3_1:-78557514 Msa0377880:CDS
AGTTTGAGAGGGAAGAACGG+TGG 0.617140 3_1:-78557613 Msa0377880:CDS
TGCAGGCATTATGTTCACAA+AGG 0.618116 3_1:-78556833 Msa0377880:CDS
GGGGTTGTGATCGGGAACGG+CGG 0.618841 3_1:+78557765 None:intergenic
TCCGCCGTCGGAGTCAGTGT+CGG 0.619090 3_1:-78557658 Msa0377880:CDS
CTGTCCAAGGAACAGCCTCA+AGG 0.619180 3_1:+78556788 None:intergenic
TGCATTGGCATTGACACATG+TGG 0.622601 3_1:+78556621 None:intergenic
AAGGGTAATTCTTCGAGTGG+TGG 0.623485 3_1:-78557511 Msa0377880:CDS
CCGACACCGTCAATCCTGAA+AGG 0.628550 3_1:-78556453 Msa0377880:CDS
TATGGAGGAGGAGAAAGTGG+TGG 0.632558 3_1:+78557888 None:intergenic
CCCGGAGATAAGATCCGGCG+AGG 0.636909 3_1:+78557814 None:intergenic
TGGGTTGGGTGAAGAAAACG+AGG 0.637664 3_1:+78558215 None:intergenic
TGAACTCAGTAGAGTTTCAG+CGG 0.639941 3_1:-78556251 Msa0377880:CDS
CTACGAGGGACATTCTAGGA+AGG 0.640215 3_1:-78556708 Msa0377880:CDS
TTGGAGCGGTAATAGGTGCA+CGG 0.641085 3_1:+78557701 None:intergenic
TGTCGGATGCCTCCTCAAAG+AGG 0.642194 3_1:+78556470 None:intergenic
ACTGCTGCACATGCACATGA+TGG 0.650779 3_1:+78558107 None:intergenic
CCGGAGATAAGATCCGGCGA+GGG 0.655444 3_1:+78557815 None:intergenic
CGGCGGCGGTGGAATTGGAG+CGG 0.663825 3_1:+78557687 None:intergenic
TCGGAGATGGATTTGATGTG+AGG 0.666434 3_1:-78557639 Msa0377880:CDS
GAGGGTCGATCCGAGCAATG+CGG 0.667976 3_1:+78557833 None:intergenic
ATGCACATGATGGTGTAAGG+AGG 0.668126 3_1:+78558117 None:intergenic
GTGAATTGAGAACCGGAGAG+GGG 0.669951 3_1:+78557746 None:intergenic
AGGTGAATTGAGAACCGGAG+AGG 0.673408 3_1:+78557744 None:intergenic
GTTTGATGATGAAACTACGA+GGG 0.673909 3_1:-78556722 Msa0377880:CDS
ATCTCCGACACTGACTCCGA+CGG 0.680633 3_1:+78557654 None:intergenic
GCTTGATGGACAAATAGCAG+AGG 0.691301 3_1:-78556347 Msa0377880:CDS
TCAGAGAGTCAATACACGAG+TGG 0.703997 3_1:+78556497 None:intergenic
CCGACGGCGGAGTTCATCGG+CGG 0.705502 3_1:+78557670 None:intergenic
GAGTTCATATCTAACCATAG+GGG 0.716962 3_1:+78556267 None:intergenic
AAGCTACGAGATCTTGACGG+AGG 0.741868 3_1:+78557724 None:intergenic
AGTTTGATGATGAAACTACG+AGG 0.766574 3_1:-78556723 Msa0377880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATGATTTAAGAAAA+TGG + chr3_1:78556684-78556703 None:intergenic 10.0%
!!! TTAATTTAATAGTATTTTGT+AGG - chr3_1:78556893-78556912 Msa0377880:intron 10.0%
!!! TTCGTTTATTTTATTGTTTT+GGG - chr3_1:78558307-78558326 Msa0377880:five_prime_UTR 15.0%
!! TTATGATTTAAGAAAATGGA+AGG + chr3_1:78556680-78556699 None:intergenic 20.0%
!! AAATTGATGCATTAATATCT+AGG + chr3_1:78556733-78556752 None:intergenic 20.0%
!! TTTACTTTATATGCAATAGT+AGG - chr3_1:78556819-78556838 Msa0377880:CDS 20.0%
!! TTACTTTATATGCAATAGTA+GGG - chr3_1:78556820-78556839 Msa0377880:CDS 20.0%
!!! ATTTTAATCAGTTTGAAGAT+TGG - chr3_1:78556947-78556966 Msa0377880:intron 20.0%
!!! CAATTGTTTTTTCTTACATA+TGG - chr3_1:78557114-78557133 Msa0377880:intron 20.0%
!! TTCAATAATCAATACCATTT+AGG + chr3_1:78558263-78558282 None:intergenic 20.0%
!!! TATTGATTATTGAATTCTCT+AGG - chr3_1:78558269-78558288 Msa0377880:five_prime_UTR 20.0%
!!! CTTCGTTTATTTTATTGTTT+TGG - chr3_1:78558306-78558325 Msa0377880:five_prime_UTR 20.0%
! TTTGTAAAAGTGATTGTTGT+TGG + chr3_1:78555847-78555866 None:intergenic 25.0%
! CTAACTAACTAACTAACTAA+TGG + chr3_1:78555932-78555951 None:intergenic 25.0%
!! TTAATTGCGGATTATAGAAA+GGG - chr3_1:78556468-78556487 Msa0377880:CDS 25.0%
! TAACAAAATGTGTAGAATTG+AGG - chr3_1:78556527-78556546 Msa0377880:CDS 25.0%
! TGCATTAATATCTAGGTTAA+AGG + chr3_1:78556726-78556745 None:intergenic 25.0%
!! GTGATTAGTCAAGATTATTA+TGG - chr3_1:78556780-78556799 Msa0377880:CDS 25.0%
!! AATTAATGCATTGACAAACA+AGG + chr3_1:78556879-78556898 None:intergenic 25.0%
! AAGATTGGCATGAAATTAAA+TGG - chr3_1:78556962-78556981 Msa0377880:intron 25.0%
! AGATTGGCATGAAATTAAAT+GGG - chr3_1:78556963-78556982 Msa0377880:intron 25.0%
!! GGAAATTTTTATTACCTTGA+AGG - chr3_1:78556984-78557003 Msa0377880:intron 25.0%
!!! ATAGTTGATAATGTTTTTGC+TGG - chr3_1:78557089-78557108 Msa0377880:intron 25.0%
!!! TATTGTGCATTTTAAGAAGT+TGG + chr3_1:78557704-78557723 None:intergenic 25.0%
AATCCAATCACAAACGAAAA+TGG - chr3_1:78555673-78555692 Msa0377880:three_prime_UTR 30.0%
! TTTTCTGTTTGCTTAAGCTT+TGG + chr3_1:78555739-78555758 None:intergenic 30.0%
! TTGGAGGCGATTTAATTTAT+GGG + chr3_1:78555822-78555841 None:intergenic 30.0%
! ATTGGAGGCGATTTAATTTA+TGG + chr3_1:78555823-78555842 None:intergenic 30.0%
! AAAGTGATTGTTGTTGGAAT+TGG + chr3_1:78555841-78555860 None:intergenic 30.0%
! AACTAACTAACTAATGGATG+TGG + chr3_1:78555926-78555945 None:intergenic 30.0%
AGTTAGTTAGAGAGAGAAAA+TGG - chr3_1:78555942-78555961 Msa0377880:CDS 30.0%
! AGCAATTTTATGCGCTAATT+CGG - chr3_1:78556431-78556450 Msa0377880:CDS 30.0%
! GTTAATTGCGGATTATAGAA+AGG - chr3_1:78556467-78556486 Msa0377880:CDS 30.0%
!! GTTCCTGAAGTTGATAATTT+GGG - chr3_1:78556549-78556568 Msa0377880:CDS 30.0%
GCTAAAAGACTTCTCAATAT+CGG - chr3_1:78556615-78556634 Msa0377880:CDS 30.0%
!! TAGATCCATTGATGTTTTAG+AGG - chr3_1:78556644-78556663 Msa0377880:CDS 30.0%
!! AGTAACCTCTAAAACATCAA+TGG + chr3_1:78556652-78556671 None:intergenic 30.0%
TAATATCTAGGTTAAAGGCA+AGG + chr3_1:78556721-78556740 None:intergenic 30.0%
TTATTACCTTGAAGGAAGTA+TGG - chr3_1:78556992-78557011 Msa0377880:intron 30.0%
TTTCAACTCATTTCTTGCAT+TGG + chr3_1:78557394-78557413 None:intergenic 30.0%
GAGTTGAAATCACTAGTTAA+AGG - chr3_1:78557405-78557424 Msa0377880:CDS 30.0%
!!! TCTTTTTTTGTCAACCTTTC+AGG + chr3_1:78557561-78557580 None:intergenic 30.0%
TGAGTTCATATCTAACCATA+GGG + chr3_1:78557734-78557753 None:intergenic 30.0%
! TGATATAAAGGTTTTGCAAG+AGG - chr3_1:78557896-78557915 Msa0377880:CDS 30.0%
!! AAAGTGTGTTGTTGCTTTAA+AGG + chr3_1:78557948-78557967 None:intergenic 30.0%
! TAAGCAAAGCATTCCAAATT+TGG - chr3_1:78558021-78558040 Msa0377880:CDS 30.0%
AAACTTATGCCATTGAATCA+AGG - chr3_1:78558072-78558091 Msa0377880:five_prime_UTR 30.0%
TACTCTTTACCTTGATTCAA+TGG + chr3_1:78558084-78558103 None:intergenic 30.0%
ATTGATACTGTCAGAATCTT+GGG + chr3_1:78558118-78558137 None:intergenic 30.0%
TATTGATACTGTCAGAATCT+TGG + chr3_1:78558119-78558138 None:intergenic 30.0%
CCTAATTGCAAATCTTTACA+CGG + chr3_1:78558170-78558189 None:intergenic 30.0%
TAAAGATTTGCAATTAGGTG+AGG - chr3_1:78558172-78558191 Msa0377880:five_prime_UTR 30.0%
AAAGATTTGCAATTAGGTGA+GGG - chr3_1:78558173-78558192 Msa0377880:five_prime_UTR 30.0%
!!! TTGCCATTTTCGTTTGTGAT+TGG + chr3_1:78555679-78555698 None:intergenic 35.0%
TTAATTTATGGGGAAGAGTG+TGG + chr3_1:78555811-78555830 None:intergenic 35.0%
! TGGAGGCGATTTAATTTATG+GGG + chr3_1:78555821-78555840 None:intergenic 35.0%
! AATTTTATGCGCTAATTCGG+AGG - chr3_1:78556434-78556453 Msa0377880:CDS 35.0%
!! GGTTCCTGAAGTTGATAATT+TGG - chr3_1:78556548-78556567 Msa0377880:CDS 35.0%
ACACCCAAATTATCAACTTC+AGG + chr3_1:78556555-78556574 None:intergenic 35.0%
!!! TTGTCTGTTTTTGTGTCACT+AGG - chr3_1:78557137-78557156 Msa0377880:intron 35.0%
!! AGTTTGATGATGAAACTACG+AGG - chr3_1:78557274-78557293 Msa0377880:intron 35.0%
!! GTTTGATGATGAAACTACGA+GGG - chr3_1:78557275-78557294 Msa0377880:intron 35.0%
AGGTCTTCTTTGTAAAAGCT+CGG - chr3_1:78557425-78557444 Msa0377880:CDS 35.0%
AATAGAGATCGTCTTTGCTT+AGG + chr3_1:78557473-78557492 None:intergenic 35.0%
CTTGAGATGTGTTCAATCAT+CGG + chr3_1:78557594-78557613 None:intergenic 35.0%
TGATAACATCAACTGGTTGT+TGG - chr3_1:78557620-78557639 Msa0377880:CDS 35.0%
TTGTTGGAAATCATGCTTGA+TGG - chr3_1:78557636-78557655 Msa0377880:CDS 35.0%
! ACAAATAGCAGAGGATTTTG+TGG - chr3_1:78557659-78557678 Msa0377880:CDS 35.0%
! CAGAGGATTTTGTGGATATA+TGG - chr3_1:78557667-78557686 Msa0377880:CDS 35.0%
GAGTTCATATCTAACCATAG+GGG + chr3_1:78557733-78557752 None:intergenic 35.0%
CTGAGTTCATATCTAACCAT+AGG + chr3_1:78557735-78557754 None:intergenic 35.0%
TCACCTATGTTGTTAGACTT+TGG - chr3_1:78557846-78557865 Msa0377880:CDS 35.0%
CAGAAAAGGGCTTGATATAA+AGG - chr3_1:78557884-78557903 Msa0377880:CDS 35.0%
AACACACTTTGTTCATGGAA+TGG - chr3_1:78557958-78557977 Msa0377880:CDS 35.0%
TGGAATGCTTTGCTTAGATT+AGG + chr3_1:78558017-78558036 None:intergenic 35.0%
!! TGGCGTAGATCATTTTTAAG+AGG - chr3_1:78558044-78558063 Msa0377880:exon 35.0%
!! CAAGGTAAAGAGTATCTGTT+AGG - chr3_1:78558090-78558109 Msa0377880:five_prime_UTR 35.0%
CGGTACACAAAAAGTTAAAG+TGG + chr3_1:78558150-78558169 None:intergenic 35.0%
CCGTGTAAAGATTTGCAATT+AGG - chr3_1:78558167-78558186 Msa0377880:five_prime_UTR 35.0%
AAGATTTGCAATTAGGTGAG+GGG - chr3_1:78558174-78558193 Msa0377880:five_prime_UTR 35.0%
!! ATCTCCATAGAGTGTTGTAT+TGG - chr3_1:78558227-78558246 Msa0377880:five_prime_UTR 35.0%
TTGGCAGGTTAATTCCTAAA+TGG - chr3_1:78558246-78558265 Msa0377880:five_prime_UTR 35.0%
!! TTAAGCTTTGGCTTTGGCTT+TGG + chr3_1:78555727-78555746 None:intergenic 40.0%
! GTTTGCTTAAGCTTTGGCTT+TGG + chr3_1:78555733-78555752 None:intergenic 40.0%
! GTGATTGTTGTTGGAATTGG+AGG + chr3_1:78555838-78555857 None:intergenic 40.0%
ATGTGAGGATGAGTTTGAGA+GGG - chr3_1:78556373-78556392 Msa0377880:CDS 40.0%
ATGAGTTTGAGAGGGAAGAA+CGG - chr3_1:78556381-78556400 Msa0377880:CDS 40.0%
AGAAAGGGTAATTCTTCGAG+TGG - chr3_1:78556483-78556502 Msa0377880:CDS 40.0%
GTAGGCAAGTCTTTCATTTG+AGG - chr3_1:78556911-78556930 Msa0377880:intron 40.0%
! TTGAAGGAAGTATGGAGAGA+CGG - chr3_1:78557000-78557019 Msa0377880:intron 40.0%
TGCAGGCATTATGTTCACAA+AGG - chr3_1:78557164-78557183 Msa0377880:intron 40.0%
GCAGGCATTATGTTCACAAA+GGG - chr3_1:78557165-78557184 Msa0377880:intron 40.0%
GTCCTGTTTACAATACCTTG+AGG - chr3_1:78557194-78557213 Msa0377880:intron 40.0%
!! AGCCTCAAGGTATTGTAAAC+AGG + chr3_1:78557199-78557218 None:intergenic 40.0%
ACGAGATGTCGAGTTACATT+CGG + chr3_1:78557345-78557364 None:intergenic 40.0%
TGTCAACCTTTCAGGATTGA+CGG + chr3_1:78557553-78557572 None:intergenic 40.0%
GATTGAACACATCTCAAGAC+AGG - chr3_1:78557596-78557615 Msa0377880:CDS 40.0%
!! GACAGGTTGATAACATCAAC+TGG - chr3_1:78557613-78557632 Msa0377880:CDS 40.0%
TGAACTCAGTAGAGTTTCAG+CGG - chr3_1:78557746-78557765 Msa0377880:CDS 40.0%
ACATAGGTGAAAACCATGCT+TGG + chr3_1:78557836-78557855 None:intergenic 40.0%
CAGCCAAAGTCTAACAACAT+AGG + chr3_1:78557852-78557871 None:intergenic 40.0%
CTATGTTGTTAGACTTTGGC+TGG - chr3_1:78557850-78557869 Msa0377880:CDS 40.0%
! AAAGGTTTTGCAAGAGGCTA+TGG - chr3_1:78557902-78557921 Msa0377880:CDS 40.0%
! AAGGTTTTGCAAGAGGCTAT+GGG - chr3_1:78557903-78557922 Msa0377880:CDS 40.0%
GCAACAACACACTTTGTTCA+TGG - chr3_1:78557953-78557972 Msa0377880:CDS 40.0%
AATGGTTTCACCACTTCTCA+AGG - chr3_1:78557976-78557995 Msa0377880:CDS 40.0%
! GCAAAGCATTCCAAATTTGG+TGG - chr3_1:78558024-78558043 Msa0377880:CDS 40.0%
ATGATCTACGCCACCAAATT+TGG + chr3_1:78558037-78558056 None:intergenic 40.0%
!!! GAAGAGTGTGGTTTTGGGTT+GGG + chr3_1:78555799-78555818 None:intergenic 45.0%
!! ATGGGGAAGAGTGTGGTTTT+GGG + chr3_1:78555804-78555823 None:intergenic 45.0%
!! TATGGGGAAGAGTGTGGTTT+TGG + chr3_1:78555805-78555824 None:intergenic 45.0%
! ATGCACATGATGGTGTAAGG+AGG + chr3_1:78555883-78555902 None:intergenic 45.0%
! CACATGCACATGATGGTGTA+AGG + chr3_1:78555886-78555905 None:intergenic 45.0%
CGAAAGAGCAACACCATGTT+CGG + chr3_1:78556011-78556030 None:intergenic 45.0%
!! GTTTGATGGGTGGGTTATCT+GGG + chr3_1:78556050-78556069 None:intergenic 45.0%
TTGGATATGGGTTCGGACTT+GGG + chr3_1:78556087-78556106 None:intergenic 45.0%
!! AAAGTGGTGGGCTTGGATAT+GGG + chr3_1:78556099-78556118 None:intergenic 45.0%
! TGCTGGATTTGGAGCTTTGA+GGG + chr3_1:78556143-78556162 None:intergenic 45.0%
! TCGGAGATGGATTTGATGTG+AGG - chr3_1:78556358-78556377 Msa0377880:CDS 45.0%
GATGTGAGGATGAGTTTGAG+AGG - chr3_1:78556372-78556391 Msa0377880:CDS 45.0%
! CGCTAATTCGGAGGTTTTTG+CGG - chr3_1:78556443-78556462 Msa0377880:CDS 45.0%
! GCTAATTCGGAGGTTTTTGC+GGG - chr3_1:78556444-78556463 Msa0377880:CDS 45.0%
! CTAATTCGGAGGTTTTTGCG+GGG - chr3_1:78556445-78556464 Msa0377880:CDS 45.0%
! GGTTTTTGCGGGGTTAATTG+CGG - chr3_1:78556455-78556474 Msa0377880:CDS 45.0%
AAGGGTAATTCTTCGAGTGG+TGG - chr3_1:78556486-78556505 Msa0377880:CDS 45.0%
GTCTCTCCATACTTCCTTCA+AGG + chr3_1:78557001-78557020 None:intergenic 45.0%
AATACCTTGAGGCTGTTCCT+TGG - chr3_1:78557205-78557224 Msa0377880:intron 45.0%
TCTTCTTCCTCTTCTGTCCA+AGG + chr3_1:78557225-78557244 None:intergenic 45.0%
GAAACTACGAGGGACATTCT+AGG - chr3_1:78557285-78557304 Msa0377880:intron 45.0%
ATGTCGAGTTACATTCGGCT+GGG + chr3_1:78557340-78557359 None:intergenic 45.0%
!! TGCATTGGCATTGACACATG+TGG + chr3_1:78557379-78557398 None:intergenic 45.0%
CGTCTTTGCTTAGGTCAAGA+TGG + chr3_1:78557464-78557483 None:intergenic 45.0%
TCAGAGAGTCAATACACGAG+TGG + chr3_1:78557503-78557522 None:intergenic 45.0%
! GCTTGATGGACAAATAGCAG+AGG - chr3_1:78557650-78557669 Msa0377880:CDS 45.0%
GCACAATAATGCATCCCCTA+TGG - chr3_1:78557716-78557735 Msa0377880:CDS 45.0%
! TTGCAATTTTCTCGTGGCCA+TGG + chr3_1:78557784-78557803 None:intergenic 45.0%
CCACGAGAAAATTGCAATGC+CGG - chr3_1:78557787-78557806 Msa0377880:CDS 45.0%
GAGAAAATTGCAATGCCGGT+TGG - chr3_1:78557791-78557810 Msa0377880:CDS 45.0%
TTTCACCACTTCTCAAGGCA+TGG - chr3_1:78557981-78558000 Msa0377880:CDS 45.0%
CCTGCCAATACAACACTCTA+TGG + chr3_1:78558234-78558253 None:intergenic 45.0%
!! CCATAGAGTGTTGTATTGGC+AGG - chr3_1:78558231-78558250 Msa0377880:five_prime_UTR 45.0%
! TGGGTTGGGTGAAGAAAACG+AGG + chr3_1:78555785-78555804 None:intergenic 50.0%
!!! GGAAGAGTGTGGTTTTGGGT+TGG + chr3_1:78555800-78555819 None:intergenic 50.0%
ACTGCTGCACATGCACATGA+TGG + chr3_1:78555893-78555912 None:intergenic 50.0%
!! AGCAACACCATGTTCGGTGT+CGG + chr3_1:78556005-78556024 None:intergenic 50.0%
!! GGTTTGATGGGTGGGTTATC+TGG + chr3_1:78556051-78556070 None:intergenic 50.0%
TTGGGCTTACGGGGTTTGAT+GGG + chr3_1:78556063-78556082 None:intergenic 50.0%
ATTGGGCTTACGGGGTTTGA+TGG + chr3_1:78556064-78556083 None:intergenic 50.0%
ATGGGTTCGGACTTGGGATT+GGG + chr3_1:78556081-78556100 None:intergenic 50.0%
TATGGGTTCGGACTTGGGAT+TGG + chr3_1:78556082-78556101 None:intergenic 50.0%
CTTGGATATGGGTTCGGACT+TGG + chr3_1:78556088-78556107 None:intergenic 50.0%
!! GAAAGTGGTGGGCTTGGATA+TGG + chr3_1:78556100-78556119 None:intergenic 50.0%
ATGGAGGAGGAGAAAGTGGT+GGG + chr3_1:78556111-78556130 None:intergenic 50.0%
TATGGAGGAGGAGAAAGTGG+TGG + chr3_1:78556112-78556131 None:intergenic 50.0%
TGGTATGGAGGAGGAGAAAG+TGG + chr3_1:78556115-78556134 None:intergenic 50.0%
TTGAGGGGAGTTTGGTATGG+AGG + chr3_1:78556127-78556146 None:intergenic 50.0%
!! GCTTTGAGGGGAGTTTGGTA+TGG + chr3_1:78556130-78556149 None:intergenic 50.0%
!! TTGGAGCTTTGAGGGGAGTT+TGG + chr3_1:78556135-78556154 None:intergenic 50.0%
!! GCTGGATTTGGAGCTTTGAG+GGG + chr3_1:78556142-78556161 None:intergenic 50.0%
! GTGCTGGATTTGGAGCTTTG+AGG + chr3_1:78556144-78556163 None:intergenic 50.0%
CTCTTCCCGGAGATAAGATC+CGG + chr3_1:78556191-78556210 None:intergenic 50.0%
TCTATGGGAGAGACTCTTCC+CGG + chr3_1:78556204-78556223 None:intergenic 50.0%
GTGAATTGAGAACCGGAGAG+GGG + chr3_1:78556254-78556273 None:intergenic 50.0%
GGTGAATTGAGAACCGGAGA+GGG + chr3_1:78556255-78556274 None:intergenic 50.0%
AGGTGAATTGAGAACCGGAG+AGG + chr3_1:78556256-78556275 None:intergenic 50.0%
GACGGAGGTGAATTGAGAAC+CGG + chr3_1:78556261-78556280 None:intergenic 50.0%
AAGCTACGAGATCTTGACGG+AGG + chr3_1:78556276-78556295 None:intergenic 50.0%
CGGAAGCTACGAGATCTTGA+CGG + chr3_1:78556279-78556298 None:intergenic 50.0%
TTGGAGCGGTAATAGGTGCA+CGG + chr3_1:78556299-78556318 None:intergenic 50.0%
GGTGGAATTGGAGCGGTAAT+AGG + chr3_1:78556306-78556325 None:intergenic 50.0%
AGTTTGAGAGGGAAGAACGG+TGG - chr3_1:78556384-78556403 Msa0377880:CDS 50.0%
GGTAATTCTTCGAGTGGTGG+TGG - chr3_1:78556489-78556508 Msa0377880:CDS 50.0%
!! AATTCTTCGAGTGGTGGTGG+TGG - chr3_1:78556492-78556511 Msa0377880:CDS 50.0%
TATGGAGAGACGGTGAGACA+TGG - chr3_1:78557010-78557029 Msa0377880:intron 50.0%
! TTGTGTCACTAGGTGTCTGC+AGG - chr3_1:78557147-78557166 Msa0377880:intron 50.0%
! CTACGAGGGACATTCTAGGA+AGG - chr3_1:78557289-78557308 Msa0377880:intron 50.0%
CATTCGGCTGGGAATCTTCT+GGG + chr3_1:78557329-78557348 None:intergenic 50.0%
ACATTCGGCTGGGAATCTTC+TGG + chr3_1:78557330-78557349 None:intergenic 50.0%
GATGTCGAGTTACATTCGGC+TGG + chr3_1:78557341-78557360 None:intergenic 50.0%
CTCTCTGATCAGCCTCTTTG+AGG - chr3_1:78557515-78557534 Msa0377880:CDS 50.0%
! TCTGATCAGCCTCTTTGAGG+AGG - chr3_1:78557518-78557537 Msa0377880:CDS 50.0%
CCTTTCAGGATTGACGGTGT+CGG + chr3_1:78557547-78557566 None:intergenic 50.0%
! AGCGGTTCTGTTTGTTGCCA+TGG - chr3_1:78557764-78557783 Msa0377880:CDS 50.0%
! CCGGCATTGCAATTTTCTCG+TGG + chr3_1:78557790-78557809 None:intergenic 50.0%
TGGCTGCAGAGATGCAGAAA+AGG - chr3_1:78557870-78557889 Msa0377880:CDS 50.0%
GGCTGCAGAGATGCAGAAAA+GGG - chr3_1:78557871-78557890 Msa0377880:CDS 50.0%
GGGTTATCTGGGCTTGAAGG+TGG + chr3_1:78556039-78556058 None:intergenic 55.0%
!! GGTGGGTTATCTGGGCTTGA+AGG + chr3_1:78556042-78556061 None:intergenic 55.0%
! GCTTACGGGGTTTGATGGGT+GGG + chr3_1:78556059-78556078 None:intergenic 55.0%
GACTTGGGATTGGGCTTACG+GGG + chr3_1:78556072-78556091 None:intergenic 55.0%
GGACTTGGGATTGGGCTTAC+GGG + chr3_1:78556073-78556092 None:intergenic 55.0%
CGGACTTGGGATTGGGCTTA+CGG + chr3_1:78556074-78556093 None:intergenic 55.0%
! GGTGGGCTTGGATATGGGTT+CGG + chr3_1:78556094-78556113 None:intergenic 55.0%
AGGGGAGTTTGGTATGGAGG+AGG + chr3_1:78556124-78556143 None:intergenic 55.0%
!! AGCAATGCGGGTGCTGGATT+TGG + chr3_1:78556154-78556173 None:intergenic 55.0%
AATCCAGCACCCGCATTGCT+CGG - chr3_1:78556154-78556173 Msa0377880:CDS 55.0%
ACGGCGGCAGAGTCTTCTAT+GGG + chr3_1:78556219-78556238 None:intergenic 55.0%
AACGGCGGCAGAGTCTTCTA+TGG + chr3_1:78556220-78556239 None:intergenic 55.0%
AGAGGGGTTGTGATCGGGAA+CGG + chr3_1:78556238-78556257 None:intergenic 55.0%
AACCGGAGAGGGGTTGTGAT+CGG + chr3_1:78556244-78556263 None:intergenic 55.0%
!! ATCTCCGACACTGACTCCGA+CGG + chr3_1:78556346-78556365 None:intergenic 55.0%
CTGTCCAAGGAACAGCCTCA+AGG + chr3_1:78557212-78557231 None:intergenic 55.0%
GGCTGTTCCTTGGACAGAAG+AGG - chr3_1:78557215-78557234 Msa0377880:intron 55.0%
TGTCGGATGCCTCCTCAAAG+AGG + chr3_1:78557530-78557549 None:intergenic 55.0%
CCGACACCGTCAATCCTGAA+AGG - chr3_1:78557544-78557563 Msa0377880:CDS 55.0%
! TGCCGGTTGGAAGCTAGATC+AGG - chr3_1:78557804-78557823 Msa0377880:CDS 55.0%
GCCGGTTGGAAGCTAGATCA+GGG - chr3_1:78557805-78557824 Msa0377880:CDS 55.0%
! GCCCTGATCTAGCTTCCAAC+CGG + chr3_1:78557809-78557828 None:intergenic 55.0%
GATCAGGGCTTCTCCAAGCA+TGG - chr3_1:78557820-78557839 Msa0377880:CDS 55.0%
CAGTGCCATGCCTTGAGAAG+TGG + chr3_1:78557989-78558008 None:intergenic 55.0%
ATCGACGCCGACACCGAACA+TGG - chr3_1:78555995-78556014 Msa0377880:CDS 60.0%
GGCTTACGGGGTTTGATGGG+TGG + chr3_1:78556060-78556079 None:intergenic 60.0%
!! GGAGGAGAAAGTGGTGGGCT+TGG + chr3_1:78556106-78556125 None:intergenic 60.0%
AGGGTCGATCCGAGCAATGC+GGG + chr3_1:78556166-78556185 None:intergenic 60.0%
GAGGGTCGATCCGAGCAATG+CGG + chr3_1:78556167-78556186 None:intergenic 60.0%
CCGGAGATAAGATCCGGCGA+GGG + chr3_1:78556185-78556204 None:intergenic 60.0%
CCCTCGCCGGATCTTATCTC+CGG - chr3_1:78556182-78556201 Msa0377880:CDS 60.0%
CCTCGCCGGATCTTATCTCC+GGG - chr3_1:78556183-78556202 Msa0377880:CDS 60.0%
TCCCGATCACAACCCCTCTC+CGG - chr3_1:78556239-78556258 Msa0377880:CDS 60.0%
ACCGGAGAGGGGTTGTGATC+GGG + chr3_1:78556243-78556262 None:intergenic 60.0%
TTCATCGGCGGCGGTGGAAT+TGG + chr3_1:78556318-78556337 None:intergenic 60.0%
ACTCCGACGGCGGAGTTCAT+CGG + chr3_1:78556333-78556352 None:intergenic 60.0%
! GTCGGAGTCAGTGTCGGAGA+TGG - chr3_1:78556345-78556364 Msa0377880:CDS 60.0%
!! TCTTCGAGTGGTGGTGGTGG+TGG - chr3_1:78556495-78556514 Msa0377880:CDS 60.0%
GGAGAGACGGTGAGACATGG+AGG - chr3_1:78557013-78557032 Msa0377880:intron 60.0%
GATCCGAGCAATGCGGGTGC+TGG + chr3_1:78556160-78556179 None:intergenic 65.0%
TTGCTCGGATCGACCCTCGC+CGG - chr3_1:78556169-78556188 Msa0377880:CDS 65.0%
CCCGGAGATAAGATCCGGCG+AGG + chr3_1:78556186-78556205 None:intergenic 65.0%
GGGGTTGTGATCGGGAACGG+CGG + chr3_1:78556235-78556254 None:intergenic 65.0%
TCCGCCGTCGGAGTCAGTGT+CGG - chr3_1:78556339-78556358 Msa0377880:CDS 65.0%
!! TCCGACACTGACTCCGACGG+CGG + chr3_1:78556343-78556362 None:intergenic 65.0%
!! TCGAGTGGTGGTGGTGGTGG+TGG - chr3_1:78556498-78556517 Msa0377880:CDS 65.0%
!! AGTGGTGGTGGTGGTGGTGG+TGG - chr3_1:78556501-78556520 Msa0377880:CDS 65.0%
CGGCGGCGGTGGAATTGGAG+CGG + chr3_1:78556313-78556332 None:intergenic 70.0%
ACGGCGGAGTTCATCGGCGG+CGG + chr3_1:78556327-78556346 None:intergenic 70.0%
CCGACGGCGGAGTTCATCGG+CGG + chr3_1:78556330-78556349 None:intergenic 70.0%
CCGCCGATGAACTCCGCCGT+CGG - chr3_1:78556327-78556346 Msa0377880:CDS 70.0%
GCGGAGTTCATCGGCGGCGG+TGG + chr3_1:78556324-78556343 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78555671 78558348 78555671 ID=Msa0377880;Name=Msa0377880
chr3_1 mRNA 78555671 78558348 78555671 ID=Msa0377880-mRNA-1;Parent=Msa0377880;Name=Msa0377880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=290|1|1|1|1|1|2|251|547
chr3_1 exon 78555671 78556860 78555671 ID=Msa0377880-mRNA-1:exon:18931;Parent=Msa0377880-mRNA-1
chr3_1 exon 78557354 78558348 78557354 ID=Msa0377880-mRNA-1:exon:18930;Parent=Msa0377880-mRNA-1
chr3_1 five_prime_UTR 78558059 78558348 78558059 ID=Msa0377880-mRNA-1:five_prime_utr;Parent=Msa0377880-mRNA-1
chr3_1 CDS 78557354 78558058 78557354 ID=Msa0377880-mRNA-1:cds;Parent=Msa0377880-mRNA-1
chr3_1 CDS 78555922 78556860 78555922 ID=Msa0377880-mRNA-1:cds;Parent=Msa0377880-mRNA-1
chr3_1 three_prime_UTR 78555671 78555921 78555671 ID=Msa0377880-mRNA-1:three_prime_utr;Parent=Msa0377880-mRNA-1
Gene Sequence

>Msa0377880

ATGGATTCTTCTTCTTCTTCTTCTTCTTCATATCATCGACGCCGACACCGAACATGGTGTTGCTCTTTCGCTGTTCCACCTTCAAGCCCAGATAACCCACCCATCAAACCCCGTAAGCCCAATCCCAAGTCCGAACCCATATCCAAGCCCACCACTTTCTCCTCCTCCATACCAAACTCCCCTCAAAGCTCCAAATCCAGCACCCGCATTGCTCGGATCGACCCTCGCCGGATCTTATCTCCGGGAAGAGTCTCTCCCATAGAAGACTCTGCCGCCGTTCCCGATCACAACCCCTCTCCGGTTCTCAATTCACCTCCGTCAAGATCTCGTAGCTTCCGTGCACCTATTACCGCTCCAATTCCACCGCCGCCGATGAACTCCGCCGTCGGAGTCAGTGTCGGAGATGGATTTGATGTGAGGATGAGTTTGAGAGGGAAGAACGGTGGTTGTATTGTTTTAGAGCTTAATTCAGCAATTTTATGCGCTAATTCGGAGGTTTTTGCGGGGTTAATTGCGGATTATAGAAAGGGTAATTCTTCGAGTGGTGGTGGTGGTGGTGGTGGTGTTAACAAAATGTGTAGAATTGAGGTTCCTGAAGTTGATAATTTGGGTGTTTTTAGAGAAACTATTGAGCTTATGTTTGAAGATGATGTTGCTAAAAGACTTCTCAATATCGGTGTTTATAGATCCATTGATGTTTTAGAGGTGTCTGCAGGCATTATGTTCACAAAGGGTGTTTTGTCCTGTTTACAATACCTTGAGGCTGTTCCTTGGACAGAAGAGGAAGAAGAGAAATTAAGAAACTTGTTCACAAGATTTAAGTTTGATGATGAAACTACGAGGGACATTCTAGGAAGGCTTTACTTGCACGACCCAGAAGATTCCCAGCCGAATGTAACTCGACATCTCGTTTGTTCTATCACCACATGTGTCAATGCCAATGCAAGAAATGAGTTGAAATCACTAGTTAAAGGTCTTCTTTGTAAAAGCTCGGTGTATGAGAAGAACCATCTTGACCTAAGCAAAGACGATCTCTATTCTGTTTGCCACTCGTGTATTGACTCTCTGATCAGCCTCTTTGAGGAGGCATCCGACACCGTCAATCCTGAAAGGTTGACAAAAAAAGATACGAATAAACCGATGATTGAACACATCTCAAGACAGGTTGATAACATCAACTGGTTGTTGGAAATCATGCTTGATGGACAAATAGCAGAGGATTTTGTGGATATATGGTCTGATCAGCACCAACTTCTTAAAATGCACAATAATGCATCCCCTATGGTTAGATATGAACTCAGTAGAGTTTCAGCGGTTCTGTTTGTTGCCATGGCCACGAGAAAATTGCAATGCCGGTTGGAAGCTAGATCAGGGCTTCTCCAAGCATGGTTTTCACCTATGTTGTTAGACTTTGGCTGGCTGCAGAGATGCAGAAAAGGGCTTGATATAAAGGTTTTGCAAGAGGCTATGGGTCAGACACTTCTTACTTTGCCTTTAAAGCAACAACACACTTTGTTCATGGAATGGTTTCACCACTTCTCAAGGCATGGCACTGAATGTCCTAATCTAAGCAAAGCATTCCAAATTTGGTGGCGTAGATCATTTTTAAGAGGCTCTGAAACTTATGCCATTGAATCAAGGTAA
Protein sequence

>Msa0377880

MDSSSSSSSSYHRRRHRTWCCSFAVPPSSPDNPPIKPRKPNPKSEPISKPTTFSSSIPNSPQSSKSSTRIARIDPRRILSPGRVSPIEDSAAVPDHNPSPVLNSPPSRSRSFRAPITAPIPPPPMNSAVGVSVGDGFDVRMSLRGKNGGCIVLELNSAILCANSEVFAGLIADYRKGNSSSGGGGGGGVNKMCRIEVPEVDNLGVFRETIELMFEDDVAKRLLNIGVYRSIDVLEVSAGIMFTKGVLSCLQYLEAVPWTEEEEEKLRNLFTRFKFDDETTRDILGRLYLHDPEDSQPNVTRHLVCSITTCVNANARNELKSLVKGLLCKSSVYEKNHLDLSKDDLYSVCHSCIDSLISLFEEASDTVNPERLTKKDTNKPMIEHISRQVDNINWLLEIMLDGQIAEDFVDIWSDQHQLLKMHNNASPMVRYELSRVSAVLFVAMATRKLQCRLEARSGLLQAWFSPMLLDFGWLQRCRKGLDIKVLQEAMGQTLLTLPLKQQHTLFMEWFHHFSRHGTECPNLSKAFQIWWRRSFLRGSETYAIESR*