AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0427640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427640 MtrunA17_Chr3g0130121 97.232 542 8 2 6 547 3 537 0.0 1078
Msa0427640 MtrunA17_Chr4g0030381 35.222 406 241 7 136 537 92 479 8.85e-80 259
Msa0427640 MtrunA17_Chr8g0387311 28.961 587 312 12 26 537 18 574 8.48e-79 259
Msa0427640 MtrunA17_Chr8g0373811 30.637 408 252 6 138 537 137 521 9.90e-69 231
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0427640 AT2G13690.1 54.495 545 211 9 12 541 18 540 0.0 560
Msa0427640 AT5G60050.1 33.021 427 258 9 117 537 79 483 1.89e-78 255
Msa0427640 AT1G63850.1 32.195 410 250 5 138 540 142 530 1.75e-72 241
Msa0427640 AT3G50780.1 32.918 401 242 5 138 537 126 500 1.04e-63 217
Msa0427640 AT3G50780.2 32.918 401 242 5 138 537 126 500 1.04e-63 217

Find 187 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAGGCGATTTAATTTA+TGG 0.119562 3_2:-78337234 None:intergenic
ATGATCTACGCCACCAAATT+TGG 0.161834 3_2:-78339449 None:intergenic
TAAGCAAAGCATTCCAAATT+TGG 0.169661 3_2:+78339436 Msa0427640:CDS
GGTTTGATGGGTGGGTTATC+TGG 0.170879 3_2:-78337462 None:intergenic
AAAGTGTGTTGTTGCTTTAA+AGG 0.172834 3_2:-78339360 None:intergenic
GAAAGTGGTGGGCTTGGATA+TGG 0.206424 3_2:-78337511 None:intergenic
TATGGGGAAGAGTGTGGTTT+TGG 0.233151 3_2:-78337216 None:intergenic
AGTTAGTTAGAGAGAGAAAA+TGG 0.235982 3_2:+78337356 Msa0427640:exon
TTCAATAATCAATACCATTT+AGG 0.253682 3_2:-78339675 None:intergenic
ACATTCGGCTGGGAATCTTC+TGG 0.254028 3_2:-78338742 None:intergenic
TTGGAGCTTTGAGGGGAGTT+TGG 0.259791 3_2:-78337546 None:intergenic
GGTTCCTGAAGTTGATAATT+TGG 0.260783 3_2:+78337962 Msa0427640:CDS
CTTGGATATGGGTTCGGACT+TGG 0.266293 3_2:-78337499 None:intergenic
CGGACTTGGGATTGGGCTTA+CGG 0.272463 3_2:-78337485 None:intergenic
CAGAAAAGGGCTTGATATAA+AGG 0.277618 3_2:+78339299 Msa0427640:CDS
AGCAATGCGGGTGCTGGATT+TGG 0.283745 3_2:-78337565 None:intergenic
TTCATCGGCGGCGGTGGAAT+TGG 0.302520 3_2:-78337729 None:intergenic
TTGGCAGGTTAATTCCTAAA+TGG 0.306856 3_2:+78339661 Msa0427640:three_prime_UTR
AATCCAATCACAAACGAAAA+TGG 0.308512 3_2:+78337093 Msa0427640:five_prime_UTR
GGACTTGGGATTGGGCTTAC+GGG 0.315616 3_2:-78337484 None:intergenic
CCGTGTAAAGATTTGCAATT+AGG 0.321222 3_2:+78339582 Msa0427640:three_prime_UTR
TATTGATACTGTCAGAATCT+TGG 0.325615 3_2:-78339531 None:intergenic
GCAACAACACACTTTGTTCA+TGG 0.330171 3_2:+78339368 Msa0427640:CDS
GGCTTACGGGGTTTGATGGG+TGG 0.331446 3_2:-78337471 None:intergenic
ATTGGGCTTACGGGGTTTGA+TGG 0.341366 3_2:-78337475 None:intergenic
AAAGTGATTGTTGTTGGAAT+TGG 0.342280 3_2:-78337252 None:intergenic
GGAGGAGAAAGTGGTGGGCT+TGG 0.344326 3_2:-78337517 None:intergenic
CTCTCTGATCAGCCTCTTTG+AGG 0.349492 3_2:+78338930 Msa0427640:CDS
ATGGGTTCGGACTTGGGATT+GGG 0.351329 3_2:-78337492 None:intergenic
TTTGTAAAAGTGATTGTTGT+TGG 0.356174 3_2:-78337258 None:intergenic
GAGTTGAAATCACTAGTTAA+AGG 0.356295 3_2:+78338820 Msa0427640:CDS
CCTGCCAATACAACACTCTA+TGG 0.360064 3_2:-78339646 None:intergenic
GGTGGGTTATCTGGGCTTGA+AGG 0.362443 3_2:-78337453 None:intergenic
GTGCTGGATTTGGAGCTTTG+AGG 0.362532 3_2:-78337555 None:intergenic
TATGGGTTCGGACTTGGGAT+TGG 0.363847 3_2:-78337493 None:intergenic
TGCTGGATTTGGAGCTTTGA+GGG 0.364906 3_2:-78337554 None:intergenic
GGTGGAATTGGAGCGGTAAT+AGG 0.371998 3_2:-78337717 None:intergenic
CATTCGGCTGGGAATCTTCT+GGG 0.375478 3_2:-78338741 None:intergenic
AACGGCGGCAGAGTCTTCTA+TGG 0.375524 3_2:-78337631 None:intergenic
CTAACTAACTAACTAACTAA+TGG 0.376563 3_2:-78337343 None:intergenic
GCTTGCTTAAGCTTTGGCTT+TGG 0.376721 3_2:-78337144 None:intergenic
CTATGTTGTTAGACTTTGGC+TGG 0.378576 3_2:+78339265 Msa0427640:CDS
TTGGAGGCGATTTAATTTAT+GGG 0.383990 3_2:-78337233 None:intergenic
TACTCTTTACCTTGATTCAA+TGG 0.384352 3_2:-78339496 None:intergenic
GCTTTGAGGGGAGTTTGGTA+TGG 0.385704 3_2:-78337541 None:intergenic
TGGCTGCAGAGATGCAGAAA+AGG 0.389977 3_2:+78339285 Msa0427640:CDS
GTTCCTGAAGTTGATAATTT+GGG 0.394094 3_2:+78337963 Msa0427640:CDS
ATTGATACTGTCAGAATCTT+GGG 0.394689 3_2:-78339530 None:intergenic
AGCGGTTCTGTTTGTTGCCA+TGG 0.400271 3_2:+78339179 Msa0427640:CDS
ACACCCAAATTATCAACTTC+AGG 0.405729 3_2:-78337966 None:intergenic
GTTTGATGGGTGGGTTATCT+GGG 0.407957 3_2:-78337461 None:intergenic
GCTAAAAGACTTCTCAATAT+CGG 0.408077 3_2:+78338029 Msa0427640:CDS
CCCTCGCCGGATCTTATCTC+CGG 0.408941 3_2:+78337596 Msa0427640:CDS
TCTATGGGAGAGACTCTTCC+CGG 0.409081 3_2:-78337615 None:intergenic
TTGGATATGGGTTCGGACTT+GGG 0.414993 3_2:-78337498 None:intergenic
TGGAATGCTTTGCTTAGATT+AGG 0.420028 3_2:-78339429 None:intergenic
CAAGGTAAAGAGTATCTGTT+AGG 0.421464 3_2:+78339505 Msa0427640:exon
TTGAGGGGAGTTTGGTATGG+AGG 0.423913 3_2:-78337538 None:intergenic
GATCCGAGCAATGCGGGTGC+TGG 0.424705 3_2:-78337571 None:intergenic
TCACCTATGTTGTTAGACTT+TGG 0.425477 3_2:+78339261 Msa0427640:CDS
TTGTGTCACTAGGTGTCTGC+AGG 0.433374 3_2:+78338562 Msa0427640:intron
GAAACTACGAGGGACATTCT+AGG 0.434329 3_2:+78338700 Msa0427640:CDS
TTTCAACTCATTTCTTGCAT+TGG 0.435190 3_2:-78338806 None:intergenic
TCTTCTTCCTCTTCTGTCCA+AGG 0.435939 3_2:-78338637 None:intergenic
TGCCGGTTGGAAGCTAGATC+AGG 0.436649 3_2:+78339219 Msa0427640:CDS
ACCGGAGAGGGGTTGTGATC+GGG 0.440559 3_2:-78337654 None:intergenic
AGCCTCAAGGTATTGTAAAC+AGG 0.444041 3_2:-78338611 None:intergenic
GCGGAGTTCATCGGCGGCGG+TGG 0.444320 3_2:-78337735 None:intergenic
CTTGAGATGTGTTCAATCAT+CGG 0.448853 3_2:-78339006 None:intergenic
AATACCTTGAGGCTGTTCCT+TGG 0.452602 3_2:+78338620 Msa0427640:CDS
AAAGTGGTGGGCTTGGATAT+GGG 0.452627 3_2:-78337510 None:intergenic
TTGTTGGAAATCATGCTTGA+TGG 0.457343 3_2:+78339051 Msa0427640:CDS
AATAGAGATCGTCTTTGCTT+AGG 0.458824 3_2:-78338885 None:intergenic
CGAAAGAGCAACACCATGTT+CGG 0.462705 3_2:-78337422 None:intergenic
CCATAGAGTGTTGTATTGGC+AGG 0.464323 3_2:+78339646 Msa0427640:three_prime_UTR
TGGTATGGAGGAGGAGAAAG+TGG 0.466478 3_2:-78337526 None:intergenic
TGATAACATCAACTGGTTGT+TGG 0.467994 3_2:+78339035 Msa0427640:CDS
GACAGGTTGATAACATCAAC+TGG 0.468787 3_2:+78339028 Msa0427640:CDS
AGGGGAGTTTGGTATGGAGG+AGG 0.468937 3_2:-78337535 None:intergenic
GTTAATTGCGGATTATAGAA+AGG 0.469473 3_2:+78337881 Msa0427640:CDS
ATCTCCATAGAGTGTTGTAT+TGG 0.475427 3_2:+78339642 Msa0427640:three_prime_UTR
TGTCAACCTTTCAGGATTGA+CGG 0.479755 3_2:-78338965 None:intergenic
AGTAACCTCTAAAACATCAA+TGG 0.487626 3_2:-78338063 None:intergenic
AACACACTTTGTTCATGGAA+TGG 0.488024 3_2:+78339373 Msa0427640:CDS
CGTCTTTGCTTAGGTCAAGA+TGG 0.489915 3_2:-78338876 None:intergenic
TAACAAAATGTGTAGAATTG+AGG 0.490736 3_2:+78337941 Msa0427640:CDS
TCTTCGAGTGGTGGTGGTGG+TGG 0.490921 3_2:+78337909 Msa0427640:CDS
GTGATTGTTGTTGGAATTGG+AGG 0.491769 3_2:-78337249 None:intergenic
AACCGGAGAGGGGTTGTGAT+CGG 0.492279 3_2:-78337655 None:intergenic
GCTTACGGGGTTTGATGGGT+GGG 0.492706 3_2:-78337470 None:intergenic
TTAATTGCGGATTATAGAAA+GGG 0.494426 3_2:+78337882 Msa0427640:CDS
AGAGGGGTTGTGATCGGGAA+CGG 0.494719 3_2:-78337649 None:intergenic
GGTGGGCTTGGATATGGGTT+CGG 0.495015 3_2:-78337505 None:intergenic
GGGTTATCTGGGCTTGAAGG+TGG 0.495636 3_2:-78337450 None:intergenic
GGCTGCAGAGATGCAGAAAA+GGG 0.496864 3_2:+78339286 Msa0427640:CDS
ATGAGTTTGAGAGGGAAGAA+CGG 0.499789 3_2:+78337795 Msa0427640:CDS
AGGTCTTCTTTGTAAAAGCT+CGG 0.499952 3_2:+78338840 Msa0427640:CDS
GACGGAGGTGAATTGAGAAC+CGG 0.499970 3_2:-78337672 None:intergenic
TTGGGCTTACGGGGTTTGAT+GGG 0.505700 3_2:-78337474 None:intergenic
CTGAGTTCATATCTAACCAT+AGG 0.505938 3_2:-78339147 None:intergenic
AAACTTATGCCATTGAATCA+AGG 0.507955 3_2:+78339487 Msa0427640:CDS
AATCCAGCACCCGCATTGCT+CGG 0.508267 3_2:+78337568 Msa0427640:CDS
CCACGAGAAAATTGCAATGC+CGG 0.516914 3_2:+78339202 Msa0427640:CDS
AGGGTCGATCCGAGCAATGC+GGG 0.519510 3_2:-78337577 None:intergenic
AATTCTTCGAGTGGTGGTGG+TGG 0.524260 3_2:+78337906 Msa0427640:CDS
CTCTTCCCGGAGATAAGATC+CGG 0.524725 3_2:-78337602 None:intergenic
TCCCGATCACAACCCCTCTC+CGG 0.526835 3_2:+78337653 Msa0427640:CDS
GCACAATAATGCATCCCCTA+TGG 0.529126 3_2:+78339131 Msa0427640:CDS
GCTGGATTTGGAGCTTTGAG+GGG 0.529230 3_2:-78337553 None:intergenic
GAGAAAATTGCAATGCCGGT+TGG 0.529896 3_2:+78339206 Msa0427640:CDS
ACTCCGACGGCGGAGTTCAT+CGG 0.533515 3_2:-78337744 None:intergenic
TATTGATTATTGAATTCTCT+AGG 0.535778 3_2:+78339684 Msa0427640:three_prime_UTR
GATGTCGAGTTACATTCGGC+TGG 0.536456 3_2:-78338753 None:intergenic
GGTAATTCTTCGAGTGGTGG+TGG 0.537316 3_2:+78337903 Msa0427640:CDS
AATGGTTTCACCACTTCTCA+AGG 0.538484 3_2:+78339391 Msa0427640:CDS
ACGGCGGAGTTCATCGGCGG+CGG 0.541307 3_2:-78337738 None:intergenic
ACATAGGTGAAAACCATGCT+TGG 0.541457 3_2:-78339248 None:intergenic
GTCGGAGTCAGTGTCGGAGA+TGG 0.542344 3_2:+78337759 Msa0427640:CDS
AAAGATTTGCAATTAGGTGA+GGG 0.552544 3_2:+78339588 Msa0427640:three_prime_UTR
GCCCTGATCTAGCTTCCAAC+CGG 0.552789 3_2:-78339221 None:intergenic
GGTGAATTGAGAACCGGAGA+GGG 0.552875 3_2:-78337666 None:intergenic
ATGGAGGAGGAGAAAGTGGT+GGG 0.554708 3_2:-78337522 None:intergenic
TGAGTTCATATCTAACCATA+GGG 0.555019 3_2:-78339146 None:intergenic
AACTAACTAACTAATGGATG+TGG 0.555256 3_2:-78337337 None:intergenic
CACATGCACATGATGGTGTA+AGG 0.556207 3_2:-78337297 None:intergenic
ATGTGAGGATGAGTTTGAGA+GGG 0.556266 3_2:+78337787 Msa0427640:CDS
ACGAGATGTCGAGTTACATT+CGG 0.559548 3_2:-78338757 None:intergenic
TTAATTTATGGGGAAGAGTG+TGG 0.559887 3_2:-78337222 None:intergenic
GGCTGTTCCTTGGACAGAAG+AGG 0.566418 3_2:+78338630 Msa0427640:CDS
CCTCGCCGGATCTTATCTCC+GGG 0.568057 3_2:+78337597 Msa0427640:CDS
GCAGGCATTATGTTCACAAA+GGG 0.570442 3_2:+78338580 Msa0427640:CDS
CCTAATTGCAAATCTTTACA+CGG 0.572250 3_2:-78339582 None:intergenic
TAAAGATTTGCAATTAGGTG+AGG 0.577448 3_2:+78339587 Msa0427640:three_prime_UTR
GATCAGGGCTTCTCCAAGCA+TGG 0.578787 3_2:+78339235 Msa0427640:CDS
GATTGAACACATCTCAAGAC+AGG 0.580199 3_2:+78339011 Msa0427640:CDS
GACTTGGGATTGGGCTTACG+GGG 0.582080 3_2:-78337483 None:intergenic
CCTTTCAGGATTGACGGTGT+CGG 0.585675 3_2:-78338959 None:intergenic
GCAAAGCATTCCAAATTTGG+TGG 0.586003 3_2:+78339439 Msa0427640:CDS
CAGCCAAAGTCTAACAACAT+AGG 0.586068 3_2:-78339264 None:intergenic
TTTCACCACTTCTCAAGGCA+TGG 0.586801 3_2:+78339396 Msa0427640:CDS
GATGTGAGGATGAGTTTGAG+AGG 0.587039 3_2:+78337786 Msa0427640:CDS
TGGAGGCGATTTAATTTATG+GGG 0.587171 3_2:-78337232 None:intergenic
AGCAACACCATGTTCGGTGT+CGG 0.587244 3_2:-78337416 None:intergenic
AAGATTTGCAATTAGGTGAG+GGG 0.590623 3_2:+78339589 Msa0427640:three_prime_UTR
CCGCCGATGAACTCCGCCGT+CGG 0.590734 3_2:+78337741 Msa0427640:CDS
ACGGCGGCAGAGTCTTCTAT+GGG 0.600004 3_2:-78337630 None:intergenic
GTCCTGTTTACAATACCTTG+AGG 0.601459 3_2:+78338609 Msa0427640:CDS
CGGAAGCTACGAGATCTTGA+CGG 0.605422 3_2:-78337690 None:intergenic
ATGTCGAGTTACATTCGGCT+GGG 0.606626 3_2:-78338752 None:intergenic
TCTGATCAGCCTCTTTGAGG+AGG 0.606748 3_2:+78338933 Msa0427640:CDS
ATCGACGCCGACACCGAACA+TGG 0.608753 3_2:+78337409 Msa0427640:CDS
TCCGACACTGACTCCGACGG+CGG 0.610110 3_2:-78337754 None:intergenic
TTGCTCGGATCGACCCTCGC+CGG 0.610784 3_2:+78337583 Msa0427640:CDS
CAGTGCCATGCCTTGAGAAG+TGG 0.610868 3_2:-78339401 None:intergenic
GCCGGTTGGAAGCTAGATCA+GGG 0.611000 3_2:+78339220 Msa0427640:CDS
AGAAAGGGTAATTCTTCGAG+TGG 0.615946 3_2:+78337897 Msa0427640:CDS
AGTTTGAGAGGGAAGAACGG+TGG 0.617140 3_2:+78337798 Msa0427640:CDS
TGCAGGCATTATGTTCACAA+AGG 0.618116 3_2:+78338579 Msa0427640:CDS
GGGGTTGTGATCGGGAACGG+CGG 0.618841 3_2:-78337646 None:intergenic
TCCGCCGTCGGAGTCAGTGT+CGG 0.619090 3_2:+78337753 Msa0427640:CDS
CTGTCCAAGGAACAGCCTCA+AGG 0.619180 3_2:-78338624 None:intergenic
TGCATTGGCATTGACACATG+TGG 0.622601 3_2:-78338791 None:intergenic
AAGGGTAATTCTTCGAGTGG+TGG 0.623485 3_2:+78337900 Msa0427640:CDS
CCGACACCGTCAATCCTGAA+AGG 0.628550 3_2:+78338959 Msa0427640:CDS
TATGGAGGAGGAGAAAGTGG+TGG 0.632558 3_2:-78337523 None:intergenic
CCCGGAGATAAGATCCGGCG+AGG 0.636909 3_2:-78337597 None:intergenic
TGGGTTGGGTGAAGAAAACG+AGG 0.637664 3_2:-78337196 None:intergenic
TGAACTCAGTAGAGTTTCAG+CGG 0.639941 3_2:+78339161 Msa0427640:CDS
CTACGAGGGACATTCTAGGA+AGG 0.640215 3_2:+78338704 Msa0427640:CDS
TTGGAGCGGTAATAGGTGCA+CGG 0.641085 3_2:-78337710 None:intergenic
TGTCGGATGCCTCCTCAAAG+AGG 0.642194 3_2:-78338942 None:intergenic
ACTGCTGCACATGCACATGA+TGG 0.650779 3_2:-78337304 None:intergenic
CCGGAGATAAGATCCGGCGA+GGG 0.655444 3_2:-78337596 None:intergenic
CGGCGGCGGTGGAATTGGAG+CGG 0.663825 3_2:-78337724 None:intergenic
TCGGAGATGGATTTGATGTG+AGG 0.666434 3_2:+78337772 Msa0427640:CDS
GAGGGTCGATCCGAGCAATG+CGG 0.667976 3_2:-78337578 None:intergenic
ATGCACATGATGGTGTAAGG+AGG 0.668126 3_2:-78337294 None:intergenic
GTGAATTGAGAACCGGAGAG+GGG 0.669951 3_2:-78337665 None:intergenic
AGGTGAATTGAGAACCGGAG+AGG 0.673408 3_2:-78337667 None:intergenic
GTTTGATGATGAAACTACGA+GGG 0.673909 3_2:+78338690 Msa0427640:CDS
ATCTCCGACACTGACTCCGA+CGG 0.680633 3_2:-78337757 None:intergenic
GCTTGATGGACAAATAGCAG+AGG 0.691301 3_2:+78339065 Msa0427640:CDS
TCAGAGAGTCAATACACGAG+TGG 0.703997 3_2:-78338915 None:intergenic
CCGACGGCGGAGTTCATCGG+CGG 0.705502 3_2:-78337741 None:intergenic
GAGTTCATATCTAACCATAG+GGG 0.716962 3_2:-78339145 None:intergenic
AAGCTACGAGATCTTGACGG+AGG 0.741868 3_2:-78337687 None:intergenic
AGTTTGATGATGAAACTACG+AGG 0.766574 3_2:+78338689 Msa0427640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATGATTTAAGAAAA+TGG - chr3_2:78338098-78338117 None:intergenic 10.0%
!!! TTAATTTAATAGTATTTTGT+AGG + chr3_2:78338307-78338326 Msa0427640:intron 10.0%
!!! TTCGTTTATTTTATTGTTTT+GGG + chr3_2:78339722-78339741 Msa0427640:three_prime_UTR 15.0%
!! TTATGATTTAAGAAAATGGA+AGG - chr3_2:78338094-78338113 None:intergenic 20.0%
!! AAATTGATGCATTAATATCT+AGG - chr3_2:78338147-78338166 None:intergenic 20.0%
!! TTTACTTTATATGCAATAGT+AGG + chr3_2:78338233-78338252 Msa0427640:intron 20.0%
!! TTACTTTATATGCAATAGTA+GGG + chr3_2:78338234-78338253 Msa0427640:intron 20.0%
!!! ATTTTAATCAGTTTGAAGAT+TGG + chr3_2:78338361-78338380 Msa0427640:intron 20.0%
!!! CAATTGTTTTTTCTTACATA+TGG + chr3_2:78338529-78338548 Msa0427640:intron 20.0%
!! TTCAATAATCAATACCATTT+AGG - chr3_2:78339678-78339697 None:intergenic 20.0%
!!! TATTGATTATTGAATTCTCT+AGG + chr3_2:78339684-78339703 Msa0427640:three_prime_UTR 20.0%
!!! CTTCGTTTATTTTATTGTTT+TGG + chr3_2:78339721-78339740 Msa0427640:three_prime_UTR 20.0%
! TTTGTAAAAGTGATTGTTGT+TGG - chr3_2:78337261-78337280 None:intergenic 25.0%
! CTAACTAACTAACTAACTAA+TGG - chr3_2:78337346-78337365 None:intergenic 25.0%
!! TTAATTGCGGATTATAGAAA+GGG + chr3_2:78337882-78337901 Msa0427640:CDS 25.0%
! TAACAAAATGTGTAGAATTG+AGG + chr3_2:78337941-78337960 Msa0427640:CDS 25.0%
! TGCATTAATATCTAGGTTAA+AGG - chr3_2:78338140-78338159 None:intergenic 25.0%
!! GTGATTAGTCAAGATTATTA+TGG + chr3_2:78338194-78338213 Msa0427640:intron 25.0%
!! AATTAATGCATTGACAAACA+AGG - chr3_2:78338293-78338312 None:intergenic 25.0%
! AAGATTGGCATGAAATTAAA+TGG + chr3_2:78338376-78338395 Msa0427640:intron 25.0%
! AGATTGGCATGAAATTAAAT+GGG + chr3_2:78338377-78338396 Msa0427640:intron 25.0%
!! GGAAATTTTTATTACCTTGA+AGG + chr3_2:78338398-78338417 Msa0427640:intron 25.0%
!!! ATAGTTGATAATGTTTTTGC+TGG + chr3_2:78338504-78338523 Msa0427640:intron 25.0%
!!! TATTGTGCATTTTAAGAAGT+TGG - chr3_2:78339119-78339138 None:intergenic 25.0%
AATCCAATCACAAACGAAAA+TGG + chr3_2:78337093-78337112 Msa0427640:five_prime_UTR 30.0%
! TTGGAGGCGATTTAATTTAT+GGG - chr3_2:78337236-78337255 None:intergenic 30.0%
! ATTGGAGGCGATTTAATTTA+TGG - chr3_2:78337237-78337256 None:intergenic 30.0%
! AAAGTGATTGTTGTTGGAAT+TGG - chr3_2:78337255-78337274 None:intergenic 30.0%
! AACTAACTAACTAATGGATG+TGG - chr3_2:78337340-78337359 None:intergenic 30.0%
AGTTAGTTAGAGAGAGAAAA+TGG + chr3_2:78337356-78337375 Msa0427640:exon 30.0%
! AGCAATTTTATGCGCTAATT+CGG + chr3_2:78337845-78337864 Msa0427640:CDS 30.0%
! GTTAATTGCGGATTATAGAA+AGG + chr3_2:78337881-78337900 Msa0427640:CDS 30.0%
!! GTTCCTGAAGTTGATAATTT+GGG + chr3_2:78337963-78337982 Msa0427640:CDS 30.0%
GCTAAAAGACTTCTCAATAT+CGG + chr3_2:78338029-78338048 Msa0427640:CDS 30.0%
!! TAGATCCATTGATGTTTTAG+AGG + chr3_2:78338058-78338077 Msa0427640:CDS 30.0%
!! AGTAACCTCTAAAACATCAA+TGG - chr3_2:78338066-78338085 None:intergenic 30.0%
TAATATCTAGGTTAAAGGCA+AGG - chr3_2:78338135-78338154 None:intergenic 30.0%
TTATTACCTTGAAGGAAGTA+TGG + chr3_2:78338406-78338425 Msa0427640:intron 30.0%
TTTCAACTCATTTCTTGCAT+TGG - chr3_2:78338809-78338828 None:intergenic 30.0%
GAGTTGAAATCACTAGTTAA+AGG + chr3_2:78338820-78338839 Msa0427640:CDS 30.0%
!!! TCTTTTTTTGTCAACCTTTC+AGG - chr3_2:78338976-78338995 None:intergenic 30.0%
TGAGTTCATATCTAACCATA+GGG - chr3_2:78339149-78339168 None:intergenic 30.0%
! TGATATAAAGGTTTTGCAAG+AGG + chr3_2:78339311-78339330 Msa0427640:CDS 30.0%
!! AAAGTGTGTTGTTGCTTTAA+AGG - chr3_2:78339363-78339382 None:intergenic 30.0%
! TAAGCAAAGCATTCCAAATT+TGG + chr3_2:78339436-78339455 Msa0427640:CDS 30.0%
AAACTTATGCCATTGAATCA+AGG + chr3_2:78339487-78339506 Msa0427640:CDS 30.0%
TACTCTTTACCTTGATTCAA+TGG - chr3_2:78339499-78339518 None:intergenic 30.0%
ATTGATACTGTCAGAATCTT+GGG - chr3_2:78339533-78339552 None:intergenic 30.0%
TATTGATACTGTCAGAATCT+TGG - chr3_2:78339534-78339553 None:intergenic 30.0%
CCTAATTGCAAATCTTTACA+CGG - chr3_2:78339585-78339604 None:intergenic 30.0%
TAAAGATTTGCAATTAGGTG+AGG + chr3_2:78339587-78339606 Msa0427640:three_prime_UTR 30.0%
AAAGATTTGCAATTAGGTGA+GGG + chr3_2:78339588-78339607 Msa0427640:three_prime_UTR 30.0%
!!! TTGCCATTTTCGTTTGTGAT+TGG - chr3_2:78337099-78337118 None:intergenic 35.0%
! TTTTCTGCTTGCTTAAGCTT+TGG - chr3_2:78337153-78337172 None:intergenic 35.0%
TTAATTTATGGGGAAGAGTG+TGG - chr3_2:78337225-78337244 None:intergenic 35.0%
! TGGAGGCGATTTAATTTATG+GGG - chr3_2:78337235-78337254 None:intergenic 35.0%
! AATTTTATGCGCTAATTCGG+AGG + chr3_2:78337848-78337867 Msa0427640:CDS 35.0%
!! GGTTCCTGAAGTTGATAATT+TGG + chr3_2:78337962-78337981 Msa0427640:CDS 35.0%
ACACCCAAATTATCAACTTC+AGG - chr3_2:78337969-78337988 None:intergenic 35.0%
!!! TTGTCTGTTTTTGTGTCACT+AGG + chr3_2:78338552-78338571 Msa0427640:intron 35.0%
!! AGTTTGATGATGAAACTACG+AGG + chr3_2:78338689-78338708 Msa0427640:CDS 35.0%
!! GTTTGATGATGAAACTACGA+GGG + chr3_2:78338690-78338709 Msa0427640:CDS 35.0%
AGGTCTTCTTTGTAAAAGCT+CGG + chr3_2:78338840-78338859 Msa0427640:CDS 35.0%
AATAGAGATCGTCTTTGCTT+AGG - chr3_2:78338888-78338907 None:intergenic 35.0%
CTTGAGATGTGTTCAATCAT+CGG - chr3_2:78339009-78339028 None:intergenic 35.0%
TGATAACATCAACTGGTTGT+TGG + chr3_2:78339035-78339054 Msa0427640:CDS 35.0%
TTGTTGGAAATCATGCTTGA+TGG + chr3_2:78339051-78339070 Msa0427640:CDS 35.0%
! ACAAATAGCAGAGGATTTTG+TGG + chr3_2:78339074-78339093 Msa0427640:CDS 35.0%
! CAGAGGATTTTGTGGATATA+TGG + chr3_2:78339082-78339101 Msa0427640:CDS 35.0%
GAGTTCATATCTAACCATAG+GGG - chr3_2:78339148-78339167 None:intergenic 35.0%
CTGAGTTCATATCTAACCAT+AGG - chr3_2:78339150-78339169 None:intergenic 35.0%
TCACCTATGTTGTTAGACTT+TGG + chr3_2:78339261-78339280 Msa0427640:CDS 35.0%
CAGAAAAGGGCTTGATATAA+AGG + chr3_2:78339299-78339318 Msa0427640:CDS 35.0%
AACACACTTTGTTCATGGAA+TGG + chr3_2:78339373-78339392 Msa0427640:CDS 35.0%
TGGAATGCTTTGCTTAGATT+AGG - chr3_2:78339432-78339451 None:intergenic 35.0%
!! TGGCGTAGATCATTTTTAAG+AGG + chr3_2:78339459-78339478 Msa0427640:CDS 35.0%
!! CAAGGTAAAGAGTATCTGTT+AGG + chr3_2:78339505-78339524 Msa0427640:exon 35.0%
CGGTACACAAAAAGTTAAAG+TGG - chr3_2:78339565-78339584 None:intergenic 35.0%
CCGTGTAAAGATTTGCAATT+AGG + chr3_2:78339582-78339601 Msa0427640:three_prime_UTR 35.0%
AAGATTTGCAATTAGGTGAG+GGG + chr3_2:78339589-78339608 Msa0427640:three_prime_UTR 35.0%
!! ATCTCCATAGAGTGTTGTAT+TGG + chr3_2:78339642-78339661 Msa0427640:three_prime_UTR 35.0%
TTGGCAGGTTAATTCCTAAA+TGG + chr3_2:78339661-78339680 Msa0427640:three_prime_UTR 35.0%
! GTGATTGTTGTTGGAATTGG+AGG - chr3_2:78337252-78337271 None:intergenic 40.0%
ATGTGAGGATGAGTTTGAGA+GGG + chr3_2:78337787-78337806 Msa0427640:CDS 40.0%
ATGAGTTTGAGAGGGAAGAA+CGG + chr3_2:78337795-78337814 Msa0427640:CDS 40.0%
AGAAAGGGTAATTCTTCGAG+TGG + chr3_2:78337897-78337916 Msa0427640:CDS 40.0%
GTAGGCAAGTCTTTCATTTG+AGG + chr3_2:78338325-78338344 Msa0427640:intron 40.0%
! TTGAAGGAAGTATGGAGAGA+CGG + chr3_2:78338414-78338433 Msa0427640:intron 40.0%
TGCAGGCATTATGTTCACAA+AGG + chr3_2:78338579-78338598 Msa0427640:CDS 40.0%
GCAGGCATTATGTTCACAAA+GGG + chr3_2:78338580-78338599 Msa0427640:CDS 40.0%
GTCCTGTTTACAATACCTTG+AGG + chr3_2:78338609-78338628 Msa0427640:CDS 40.0%
!! AGCCTCAAGGTATTGTAAAC+AGG - chr3_2:78338614-78338633 None:intergenic 40.0%
ACGAGATGTCGAGTTACATT+CGG - chr3_2:78338760-78338779 None:intergenic 40.0%
TGTCAACCTTTCAGGATTGA+CGG - chr3_2:78338968-78338987 None:intergenic 40.0%
GATTGAACACATCTCAAGAC+AGG + chr3_2:78339011-78339030 Msa0427640:CDS 40.0%
!! GACAGGTTGATAACATCAAC+TGG + chr3_2:78339028-78339047 Msa0427640:CDS 40.0%
TGAACTCAGTAGAGTTTCAG+CGG + chr3_2:78339161-78339180 Msa0427640:CDS 40.0%
ACATAGGTGAAAACCATGCT+TGG - chr3_2:78339251-78339270 None:intergenic 40.0%
CAGCCAAAGTCTAACAACAT+AGG - chr3_2:78339267-78339286 None:intergenic 40.0%
CTATGTTGTTAGACTTTGGC+TGG + chr3_2:78339265-78339284 Msa0427640:CDS 40.0%
! AAAGGTTTTGCAAGAGGCTA+TGG + chr3_2:78339317-78339336 Msa0427640:CDS 40.0%
! AAGGTTTTGCAAGAGGCTAT+GGG + chr3_2:78339318-78339337 Msa0427640:CDS 40.0%
GCAACAACACACTTTGTTCA+TGG + chr3_2:78339368-78339387 Msa0427640:CDS 40.0%
AATGGTTTCACCACTTCTCA+AGG + chr3_2:78339391-78339410 Msa0427640:CDS 40.0%
! GCAAAGCATTCCAAATTTGG+TGG + chr3_2:78339439-78339458 Msa0427640:CDS 40.0%
ATGATCTACGCCACCAAATT+TGG - chr3_2:78339452-78339471 None:intergenic 40.0%
! GCTTGCTTAAGCTTTGGCTT+TGG - chr3_2:78337147-78337166 None:intergenic 45.0%
!!! GAAGAGTGTGGTTTTGGGTT+GGG - chr3_2:78337213-78337232 None:intergenic 45.0%
!! ATGGGGAAGAGTGTGGTTTT+GGG - chr3_2:78337218-78337237 None:intergenic 45.0%
!! TATGGGGAAGAGTGTGGTTT+TGG - chr3_2:78337219-78337238 None:intergenic 45.0%
! ATGCACATGATGGTGTAAGG+AGG - chr3_2:78337297-78337316 None:intergenic 45.0%
! CACATGCACATGATGGTGTA+AGG - chr3_2:78337300-78337319 None:intergenic 45.0%
CGAAAGAGCAACACCATGTT+CGG - chr3_2:78337425-78337444 None:intergenic 45.0%
!! GTTTGATGGGTGGGTTATCT+GGG - chr3_2:78337464-78337483 None:intergenic 45.0%
TTGGATATGGGTTCGGACTT+GGG - chr3_2:78337501-78337520 None:intergenic 45.0%
!! AAAGTGGTGGGCTTGGATAT+GGG - chr3_2:78337513-78337532 None:intergenic 45.0%
! TGCTGGATTTGGAGCTTTGA+GGG - chr3_2:78337557-78337576 None:intergenic 45.0%
! TCGGAGATGGATTTGATGTG+AGG + chr3_2:78337772-78337791 Msa0427640:CDS 45.0%
GATGTGAGGATGAGTTTGAG+AGG + chr3_2:78337786-78337805 Msa0427640:CDS 45.0%
! CGCTAATTCGGAGGTTTTTG+CGG + chr3_2:78337857-78337876 Msa0427640:CDS 45.0%
! GCTAATTCGGAGGTTTTTGC+GGG + chr3_2:78337858-78337877 Msa0427640:CDS 45.0%
! CTAATTCGGAGGTTTTTGCG+GGG + chr3_2:78337859-78337878 Msa0427640:CDS 45.0%
! GGTTTTTGCGGGGTTAATTG+CGG + chr3_2:78337869-78337888 Msa0427640:CDS 45.0%
AAGGGTAATTCTTCGAGTGG+TGG + chr3_2:78337900-78337919 Msa0427640:CDS 45.0%
GTCTCTCCATACTTCCTTCA+AGG - chr3_2:78338415-78338434 None:intergenic 45.0%
AATACCTTGAGGCTGTTCCT+TGG + chr3_2:78338620-78338639 Msa0427640:CDS 45.0%
TCTTCTTCCTCTTCTGTCCA+AGG - chr3_2:78338640-78338659 None:intergenic 45.0%
GAAACTACGAGGGACATTCT+AGG + chr3_2:78338700-78338719 Msa0427640:CDS 45.0%
ATGTCGAGTTACATTCGGCT+GGG - chr3_2:78338755-78338774 None:intergenic 45.0%
!! TGCATTGGCATTGACACATG+TGG - chr3_2:78338794-78338813 None:intergenic 45.0%
CGTCTTTGCTTAGGTCAAGA+TGG - chr3_2:78338879-78338898 None:intergenic 45.0%
TCAGAGAGTCAATACACGAG+TGG - chr3_2:78338918-78338937 None:intergenic 45.0%
! GCTTGATGGACAAATAGCAG+AGG + chr3_2:78339065-78339084 Msa0427640:CDS 45.0%
GCACAATAATGCATCCCCTA+TGG + chr3_2:78339131-78339150 Msa0427640:CDS 45.0%
! TTGCAATTTTCTCGTGGCCA+TGG - chr3_2:78339199-78339218 None:intergenic 45.0%
CCACGAGAAAATTGCAATGC+CGG + chr3_2:78339202-78339221 Msa0427640:CDS 45.0%
GAGAAAATTGCAATGCCGGT+TGG + chr3_2:78339206-78339225 Msa0427640:CDS 45.0%
TTTCACCACTTCTCAAGGCA+TGG + chr3_2:78339396-78339415 Msa0427640:CDS 45.0%
CCTGCCAATACAACACTCTA+TGG - chr3_2:78339649-78339668 None:intergenic 45.0%
!! CCATAGAGTGTTGTATTGGC+AGG + chr3_2:78339646-78339665 Msa0427640:three_prime_UTR 45.0%
! TGGGTTGGGTGAAGAAAACG+AGG - chr3_2:78337199-78337218 None:intergenic 50.0%
!!! GGAAGAGTGTGGTTTTGGGT+TGG - chr3_2:78337214-78337233 None:intergenic 50.0%
ACTGCTGCACATGCACATGA+TGG - chr3_2:78337307-78337326 None:intergenic 50.0%
!! AGCAACACCATGTTCGGTGT+CGG - chr3_2:78337419-78337438 None:intergenic 50.0%
!! GGTTTGATGGGTGGGTTATC+TGG - chr3_2:78337465-78337484 None:intergenic 50.0%
TTGGGCTTACGGGGTTTGAT+GGG - chr3_2:78337477-78337496 None:intergenic 50.0%
ATTGGGCTTACGGGGTTTGA+TGG - chr3_2:78337478-78337497 None:intergenic 50.0%
ATGGGTTCGGACTTGGGATT+GGG - chr3_2:78337495-78337514 None:intergenic 50.0%
TATGGGTTCGGACTTGGGAT+TGG - chr3_2:78337496-78337515 None:intergenic 50.0%
CTTGGATATGGGTTCGGACT+TGG - chr3_2:78337502-78337521 None:intergenic 50.0%
!! GAAAGTGGTGGGCTTGGATA+TGG - chr3_2:78337514-78337533 None:intergenic 50.0%
ATGGAGGAGGAGAAAGTGGT+GGG - chr3_2:78337525-78337544 None:intergenic 50.0%
TATGGAGGAGGAGAAAGTGG+TGG - chr3_2:78337526-78337545 None:intergenic 50.0%
TGGTATGGAGGAGGAGAAAG+TGG - chr3_2:78337529-78337548 None:intergenic 50.0%
TTGAGGGGAGTTTGGTATGG+AGG - chr3_2:78337541-78337560 None:intergenic 50.0%
!! GCTTTGAGGGGAGTTTGGTA+TGG - chr3_2:78337544-78337563 None:intergenic 50.0%
!! TTGGAGCTTTGAGGGGAGTT+TGG - chr3_2:78337549-78337568 None:intergenic 50.0%
!! GCTGGATTTGGAGCTTTGAG+GGG - chr3_2:78337556-78337575 None:intergenic 50.0%
! GTGCTGGATTTGGAGCTTTG+AGG - chr3_2:78337558-78337577 None:intergenic 50.0%
CTCTTCCCGGAGATAAGATC+CGG - chr3_2:78337605-78337624 None:intergenic 50.0%
TCTATGGGAGAGACTCTTCC+CGG - chr3_2:78337618-78337637 None:intergenic 50.0%
GTGAATTGAGAACCGGAGAG+GGG - chr3_2:78337668-78337687 None:intergenic 50.0%
GGTGAATTGAGAACCGGAGA+GGG - chr3_2:78337669-78337688 None:intergenic 50.0%
AGGTGAATTGAGAACCGGAG+AGG - chr3_2:78337670-78337689 None:intergenic 50.0%
GACGGAGGTGAATTGAGAAC+CGG - chr3_2:78337675-78337694 None:intergenic 50.0%
AAGCTACGAGATCTTGACGG+AGG - chr3_2:78337690-78337709 None:intergenic 50.0%
CGGAAGCTACGAGATCTTGA+CGG - chr3_2:78337693-78337712 None:intergenic 50.0%
TTGGAGCGGTAATAGGTGCA+CGG - chr3_2:78337713-78337732 None:intergenic 50.0%
GGTGGAATTGGAGCGGTAAT+AGG - chr3_2:78337720-78337739 None:intergenic 50.0%
AGTTTGAGAGGGAAGAACGG+TGG + chr3_2:78337798-78337817 Msa0427640:CDS 50.0%
GGTAATTCTTCGAGTGGTGG+TGG + chr3_2:78337903-78337922 Msa0427640:CDS 50.0%
!! AATTCTTCGAGTGGTGGTGG+TGG + chr3_2:78337906-78337925 Msa0427640:CDS 50.0%
TATGGAGAGACGGTGAGACA+TGG + chr3_2:78338424-78338443 Msa0427640:intron 50.0%
! TTGTGTCACTAGGTGTCTGC+AGG + chr3_2:78338562-78338581 Msa0427640:intron 50.0%
! CTACGAGGGACATTCTAGGA+AGG + chr3_2:78338704-78338723 Msa0427640:CDS 50.0%
CATTCGGCTGGGAATCTTCT+GGG - chr3_2:78338744-78338763 None:intergenic 50.0%
ACATTCGGCTGGGAATCTTC+TGG - chr3_2:78338745-78338764 None:intergenic 50.0%
GATGTCGAGTTACATTCGGC+TGG - chr3_2:78338756-78338775 None:intergenic 50.0%
CTCTCTGATCAGCCTCTTTG+AGG + chr3_2:78338930-78338949 Msa0427640:CDS 50.0%
! TCTGATCAGCCTCTTTGAGG+AGG + chr3_2:78338933-78338952 Msa0427640:CDS 50.0%
CCTTTCAGGATTGACGGTGT+CGG - chr3_2:78338962-78338981 None:intergenic 50.0%
! AGCGGTTCTGTTTGTTGCCA+TGG + chr3_2:78339179-78339198 Msa0427640:CDS 50.0%
! CCGGCATTGCAATTTTCTCG+TGG - chr3_2:78339205-78339224 None:intergenic 50.0%
TGGCTGCAGAGATGCAGAAA+AGG + chr3_2:78339285-78339304 Msa0427640:CDS 50.0%
GGCTGCAGAGATGCAGAAAA+GGG + chr3_2:78339286-78339305 Msa0427640:CDS 50.0%
GGGTTATCTGGGCTTGAAGG+TGG - chr3_2:78337453-78337472 None:intergenic 55.0%
!! GGTGGGTTATCTGGGCTTGA+AGG - chr3_2:78337456-78337475 None:intergenic 55.0%
! GCTTACGGGGTTTGATGGGT+GGG - chr3_2:78337473-78337492 None:intergenic 55.0%
GACTTGGGATTGGGCTTACG+GGG - chr3_2:78337486-78337505 None:intergenic 55.0%
GGACTTGGGATTGGGCTTAC+GGG - chr3_2:78337487-78337506 None:intergenic 55.0%
CGGACTTGGGATTGGGCTTA+CGG - chr3_2:78337488-78337507 None:intergenic 55.0%
! GGTGGGCTTGGATATGGGTT+CGG - chr3_2:78337508-78337527 None:intergenic 55.0%
AGGGGAGTTTGGTATGGAGG+AGG - chr3_2:78337538-78337557 None:intergenic 55.0%
!! AGCAATGCGGGTGCTGGATT+TGG - chr3_2:78337568-78337587 None:intergenic 55.0%
AATCCAGCACCCGCATTGCT+CGG + chr3_2:78337568-78337587 Msa0427640:CDS 55.0%
ACGGCGGCAGAGTCTTCTAT+GGG - chr3_2:78337633-78337652 None:intergenic 55.0%
AACGGCGGCAGAGTCTTCTA+TGG - chr3_2:78337634-78337653 None:intergenic 55.0%
AGAGGGGTTGTGATCGGGAA+CGG - chr3_2:78337652-78337671 None:intergenic 55.0%
AACCGGAGAGGGGTTGTGAT+CGG - chr3_2:78337658-78337677 None:intergenic 55.0%
!! ATCTCCGACACTGACTCCGA+CGG - chr3_2:78337760-78337779 None:intergenic 55.0%
CTGTCCAAGGAACAGCCTCA+AGG - chr3_2:78338627-78338646 None:intergenic 55.0%
GGCTGTTCCTTGGACAGAAG+AGG + chr3_2:78338630-78338649 Msa0427640:CDS 55.0%
TGTCGGATGCCTCCTCAAAG+AGG - chr3_2:78338945-78338964 None:intergenic 55.0%
CCGACACCGTCAATCCTGAA+AGG + chr3_2:78338959-78338978 Msa0427640:CDS 55.0%
! TGCCGGTTGGAAGCTAGATC+AGG + chr3_2:78339219-78339238 Msa0427640:CDS 55.0%
GCCGGTTGGAAGCTAGATCA+GGG + chr3_2:78339220-78339239 Msa0427640:CDS 55.0%
! GCCCTGATCTAGCTTCCAAC+CGG - chr3_2:78339224-78339243 None:intergenic 55.0%
GATCAGGGCTTCTCCAAGCA+TGG + chr3_2:78339235-78339254 Msa0427640:CDS 55.0%
CAGTGCCATGCCTTGAGAAG+TGG - chr3_2:78339404-78339423 None:intergenic 55.0%
ATCGACGCCGACACCGAACA+TGG + chr3_2:78337409-78337428 Msa0427640:CDS 60.0%
GGCTTACGGGGTTTGATGGG+TGG - chr3_2:78337474-78337493 None:intergenic 60.0%
!! GGAGGAGAAAGTGGTGGGCT+TGG - chr3_2:78337520-78337539 None:intergenic 60.0%
AGGGTCGATCCGAGCAATGC+GGG - chr3_2:78337580-78337599 None:intergenic 60.0%
GAGGGTCGATCCGAGCAATG+CGG - chr3_2:78337581-78337600 None:intergenic 60.0%
CCGGAGATAAGATCCGGCGA+GGG - chr3_2:78337599-78337618 None:intergenic 60.0%
CCCTCGCCGGATCTTATCTC+CGG + chr3_2:78337596-78337615 Msa0427640:CDS 60.0%
CCTCGCCGGATCTTATCTCC+GGG + chr3_2:78337597-78337616 Msa0427640:CDS 60.0%
TCCCGATCACAACCCCTCTC+CGG + chr3_2:78337653-78337672 Msa0427640:CDS 60.0%
ACCGGAGAGGGGTTGTGATC+GGG - chr3_2:78337657-78337676 None:intergenic 60.0%
TTCATCGGCGGCGGTGGAAT+TGG - chr3_2:78337732-78337751 None:intergenic 60.0%
ACTCCGACGGCGGAGTTCAT+CGG - chr3_2:78337747-78337766 None:intergenic 60.0%
! GTCGGAGTCAGTGTCGGAGA+TGG + chr3_2:78337759-78337778 Msa0427640:CDS 60.0%
!! TCTTCGAGTGGTGGTGGTGG+TGG + chr3_2:78337909-78337928 Msa0427640:CDS 60.0%
GGAGAGACGGTGAGACATGG+AGG + chr3_2:78338427-78338446 Msa0427640:intron 60.0%
GATCCGAGCAATGCGGGTGC+TGG - chr3_2:78337574-78337593 None:intergenic 65.0%
TTGCTCGGATCGACCCTCGC+CGG + chr3_2:78337583-78337602 Msa0427640:CDS 65.0%
CCCGGAGATAAGATCCGGCG+AGG - chr3_2:78337600-78337619 None:intergenic 65.0%
GGGGTTGTGATCGGGAACGG+CGG - chr3_2:78337649-78337668 None:intergenic 65.0%
TCCGCCGTCGGAGTCAGTGT+CGG + chr3_2:78337753-78337772 Msa0427640:CDS 65.0%
!! TCCGACACTGACTCCGACGG+CGG - chr3_2:78337757-78337776 None:intergenic 65.0%
!! TCGAGTGGTGGTGGTGGTGG+TGG + chr3_2:78337912-78337931 Msa0427640:CDS 65.0%
!! AGTGGTGGTGGTGGTGGTGG+TGG + chr3_2:78337915-78337934 Msa0427640:CDS 65.0%
CGGCGGCGGTGGAATTGGAG+CGG - chr3_2:78337727-78337746 None:intergenic 70.0%
ACGGCGGAGTTCATCGGCGG+CGG - chr3_2:78337741-78337760 None:intergenic 70.0%
CCGACGGCGGAGTTCATCGG+CGG - chr3_2:78337744-78337763 None:intergenic 70.0%
CCGCCGATGAACTCCGCCGT+CGG + chr3_2:78337741-78337760 Msa0427640:CDS 70.0%
GCGGAGTTCATCGGCGGCGG+TGG - chr3_2:78337738-78337757 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 78337091 78339763 78337091 ID=Msa0427640;Name=Msa0427640
chr3_2 mRNA 78337091 78339763 78337091 ID=Msa0427640-mRNA-1;Parent=Msa0427640;Name=Msa0427640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=284|1|1|1|1|1|2|251|547
chr3_2 exon 78337091 78338079 78337091 ID=Msa0427640-mRNA-1:exon:20636;Parent=Msa0427640-mRNA-1
chr3_2 exon 78338574 78339763 78338574 ID=Msa0427640-mRNA-1:exon:20637;Parent=Msa0427640-mRNA-1
chr3_2 five_prime_UTR 78337091 78337374 78337091 ID=Msa0427640-mRNA-1:five_prime_utr;Parent=Msa0427640-mRNA-1
chr3_2 CDS 78337375 78338079 78337375 ID=Msa0427640-mRNA-1:cds;Parent=Msa0427640-mRNA-1
chr3_2 CDS 78338574 78339512 78338574 ID=Msa0427640-mRNA-1:cds;Parent=Msa0427640-mRNA-1
chr3_2 three_prime_UTR 78339513 78339763 78339513 ID=Msa0427640-mRNA-1:three_prime_utr;Parent=Msa0427640-mRNA-1
Gene Sequence

>Msa0427640

ATGGATTCTTCTTCTTCTTCTTCTTCTTCATATCATCGACGCCGACACCGAACATGGTGTTGCTCTTTCGCTGTTCCACCTTCAAGCCCAGATAACCCACCCATCAAACCCCGTAAGCCCAATCCCAAGTCCGAACCCATATCCAAGCCCACCACTTTCTCCTCCTCCATACCAAACTCCCCTCAAAGCTCCAAATCCAGCACCCGCATTGCTCGGATCGACCCTCGCCGGATCTTATCTCCGGGAAGAGTCTCTCCCATAGAAGACTCTGCCGCCGTTCCCGATCACAACCCCTCTCCGGTTCTCAATTCACCTCCGTCAAGATCTCGTAGCTTCCGTGCACCTATTACCGCTCCAATTCCACCGCCGCCGATGAACTCCGCCGTCGGAGTCAGTGTCGGAGATGGATTTGATGTGAGGATGAGTTTGAGAGGGAAGAACGGTGGTTGTATTGTTTTAGAGCTTAATTCAGCAATTTTATGCGCTAATTCGGAGGTTTTTGCGGGGTTAATTGCGGATTATAGAAAGGGTAATTCTTCGAGTGGTGGTGGTGGTGGTGGTGGTGTTAACAAAATGTGTAGAATTGAGGTTCCTGAAGTTGATAATTTGGGTGTTTTTAGAGAAACTATTGAGCTTATGTTTGAAGATGATGTTGCTAAAAGACTTCTCAATATCGGTGTTTATAGATCCATTGATGTTTTAGAGGTGTCTGCAGGCATTATGTTCACAAAGGGTGTTTTGTCCTGTTTACAATACCTTGAGGCTGTTCCTTGGACAGAAGAGGAAGAAGAGAAATTAAGAAACTTGTTCACAAGATTTAAGTTTGATGATGAAACTACGAGGGACATTCTAGGAAGGCTTTACTTGCACGACCCAGAAGATTCCCAGCCGAATGTAACTCGACATCTCGTTTGTTCTATCACCACATGTGTCAATGCCAATGCAAGAAATGAGTTGAAATCACTAGTTAAAGGTCTTCTTTGTAAAAGCTCGGTGTATGAGAAGAACCATCTTGACCTAAGCAAAGACGATCTCTATTCTGTTTGCCACTCGTGTATTGACTCTCTGATCAGCCTCTTTGAGGAGGCATCCGACACCGTCAATCCTGAAAGGTTGACAAAAAAAGATACGAATAAACCGATGATTGAACACATCTCAAGACAGGTTGATAACATCAACTGGTTGTTGGAAATCATGCTTGATGGACAAATAGCAGAGGATTTTGTGGATATATGGTCTGATCAGCACCAACTTCTTAAAATGCACAATAATGCATCCCCTATGGTTAGATATGAACTCAGTAGAGTTTCAGCGGTTCTGTTTGTTGCCATGGCCACGAGAAAATTGCAATGCCGGTTGGAAGCTAGATCAGGGCTTCTCCAAGCATGGTTTTCACCTATGTTGTTAGACTTTGGCTGGCTGCAGAGATGCAGAAAAGGGCTTGATATAAAGGTTTTGCAAGAGGCTATGGGTCAGACACTTCTTACTTTGCCTTTAAAGCAACAACACACTTTGTTCATGGAATGGTTTCACCACTTCTCAAGGCATGGCACTGAATGTCCTAATCTAAGCAAAGCATTCCAAATTTGGTGGCGTAGATCATTTTTAAGAGGCTCTGAAACTTATGCCATTGAATCAAGGTAA
Protein sequence

>Msa0427640

MDSSSSSSSSYHRRRHRTWCCSFAVPPSSPDNPPIKPRKPNPKSEPISKPTTFSSSIPNSPQSSKSSTRIARIDPRRILSPGRVSPIEDSAAVPDHNPSPVLNSPPSRSRSFRAPITAPIPPPPMNSAVGVSVGDGFDVRMSLRGKNGGCIVLELNSAILCANSEVFAGLIADYRKGNSSSGGGGGGGVNKMCRIEVPEVDNLGVFRETIELMFEDDVAKRLLNIGVYRSIDVLEVSAGIMFTKGVLSCLQYLEAVPWTEEEEEKLRNLFTRFKFDDETTRDILGRLYLHDPEDSQPNVTRHLVCSITTCVNANARNELKSLVKGLLCKSSVYEKNHLDLSKDDLYSVCHSCIDSLISLFEEASDTVNPERLTKKDTNKPMIEHISRQVDNINWLLEIMLDGQIAEDFVDIWSDQHQLLKMHNNASPMVRYELSRVSAVLFVAMATRKLQCRLEARSGLLQAWFSPMLLDFGWLQRCRKGLDIKVLQEAMGQTLLTLPLKQQHTLFMEWFHHFSRHGTECPNLSKAFQIWWRRSFLRGSETYAIESR*