AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377950 MtrunA17_Chr3g0130121 97.232 542 8 2 6 547 3 537 0.0 1078
Msa0377950 MtrunA17_Chr4g0030381 35.222 406 241 7 136 537 92 479 8.85e-80 259
Msa0377950 MtrunA17_Chr8g0387311 28.961 587 312 12 26 537 18 574 8.48e-79 259
Msa0377950 MtrunA17_Chr8g0373811 30.637 408 252 6 138 537 137 521 9.90e-69 231
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377950 AT2G13690.1 54.495 545 211 9 12 541 18 540 0.0 560
Msa0377950 AT5G60050.1 33.021 427 258 9 117 537 79 483 1.89e-78 255
Msa0377950 AT1G63850.1 32.195 410 250 5 138 540 142 530 1.75e-72 241
Msa0377950 AT3G50780.1 32.918 401 242 5 138 537 126 500 1.04e-63 217
Msa0377950 AT3G50780.2 32.918 401 242 5 138 537 126 500 1.04e-63 217

Find 187 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGGAGGCGATTTAATTTA+TGG 0.119562 3_1:+78633057 None:intergenic
ATGATCTACGCCACCAAATT+TGG 0.161834 3_1:+78630841 None:intergenic
TAAGCAAAGCATTCCAAATT+TGG 0.169661 3_1:-78630854 Msa0377950:CDS
GGTTTGATGGGTGGGTTATC+TGG 0.170879 3_1:+78632829 None:intergenic
AAAGTGTGTTGTTGCTTTAA+AGG 0.172834 3_1:+78630930 None:intergenic
GAAAGTGGTGGGCTTGGATA+TGG 0.206424 3_1:+78632780 None:intergenic
TATGGGGAAGAGTGTGGTTT+TGG 0.233151 3_1:+78633075 None:intergenic
AGTTAGTTAGAGAGAGAAAA+TGG 0.235982 3_1:-78632935 Msa0377950:exon
TTCAATAATCAATACCATTT+AGG 0.253682 3_1:+78630615 None:intergenic
ACATTCGGCTGGGAATCTTC+TGG 0.254028 3_1:+78631548 None:intergenic
TTGGAGCTTTGAGGGGAGTT+TGG 0.259791 3_1:+78632745 None:intergenic
GGTTCCTGAAGTTGATAATT+TGG 0.260783 3_1:-78632329 Msa0377950:CDS
CTTGGATATGGGTTCGGACT+TGG 0.266293 3_1:+78632792 None:intergenic
CGGACTTGGGATTGGGCTTA+CGG 0.272463 3_1:+78632806 None:intergenic
CAGAAAAGGGCTTGATATAA+AGG 0.277618 3_1:-78630991 Msa0377950:CDS
AGCAATGCGGGTGCTGGATT+TGG 0.283745 3_1:+78632726 None:intergenic
TTCATCGGCGGCGGTGGAAT+TGG 0.302520 3_1:+78632562 None:intergenic
TTGGCAGGTTAATTCCTAAA+TGG 0.306856 3_1:-78630629 Msa0377950:three_prime_UTR
AATCCAATCACAAACGAAAA+TGG 0.308512 3_1:-78633198 Msa0377950:five_prime_UTR
GGACTTGGGATTGGGCTTAC+GGG 0.315616 3_1:+78632807 None:intergenic
CCGTGTAAAGATTTGCAATT+AGG 0.321222 3_1:-78630708 Msa0377950:three_prime_UTR
TATTGATACTGTCAGAATCT+TGG 0.325615 3_1:+78630759 None:intergenic
GCAACAACACACTTTGTTCA+TGG 0.330171 3_1:-78630922 Msa0377950:CDS
GGCTTACGGGGTTTGATGGG+TGG 0.331446 3_1:+78632820 None:intergenic
ATTGGGCTTACGGGGTTTGA+TGG 0.341366 3_1:+78632816 None:intergenic
AAAGTGATTGTTGTTGGAAT+TGG 0.342280 3_1:+78633039 None:intergenic
GGAGGAGAAAGTGGTGGGCT+TGG 0.344326 3_1:+78632774 None:intergenic
CTCTCTGATCAGCCTCTTTG+AGG 0.349492 3_1:-78631360 Msa0377950:CDS
ATGGGTTCGGACTTGGGATT+GGG 0.351329 3_1:+78632799 None:intergenic
TTTGTAAAAGTGATTGTTGT+TGG 0.356174 3_1:+78633033 None:intergenic
GAGTTGAAATCACTAGTTAA+AGG 0.356295 3_1:-78631470 Msa0377950:CDS
CCTGCCAATACAACACTCTA+TGG 0.360064 3_1:+78630644 None:intergenic
GGTGGGTTATCTGGGCTTGA+AGG 0.362443 3_1:+78632838 None:intergenic
GTGCTGGATTTGGAGCTTTG+AGG 0.362532 3_1:+78632736 None:intergenic
TATGGGTTCGGACTTGGGAT+TGG 0.363847 3_1:+78632798 None:intergenic
TGCTGGATTTGGAGCTTTGA+GGG 0.364906 3_1:+78632737 None:intergenic
GGTGGAATTGGAGCGGTAAT+AGG 0.371998 3_1:+78632574 None:intergenic
CATTCGGCTGGGAATCTTCT+GGG 0.375478 3_1:+78631549 None:intergenic
AACGGCGGCAGAGTCTTCTA+TGG 0.375524 3_1:+78632660 None:intergenic
CTAACTAACTAACTAACTAA+TGG 0.376563 3_1:+78632948 None:intergenic
GCTTGCTTAAGCTTTGGCTT+TGG 0.376721 3_1:+78633147 None:intergenic
CTATGTTGTTAGACTTTGGC+TGG 0.378576 3_1:-78631025 Msa0377950:CDS
TTGGAGGCGATTTAATTTAT+GGG 0.383990 3_1:+78633058 None:intergenic
TACTCTTTACCTTGATTCAA+TGG 0.384352 3_1:+78630794 None:intergenic
GCTTTGAGGGGAGTTTGGTA+TGG 0.385704 3_1:+78632750 None:intergenic
TGGCTGCAGAGATGCAGAAA+AGG 0.389977 3_1:-78631005 Msa0377950:CDS
GTTCCTGAAGTTGATAATTT+GGG 0.394094 3_1:-78632328 Msa0377950:CDS
ATTGATACTGTCAGAATCTT+GGG 0.394689 3_1:+78630760 None:intergenic
AGCGGTTCTGTTTGTTGCCA+TGG 0.400271 3_1:-78631111 Msa0377950:CDS
ACACCCAAATTATCAACTTC+AGG 0.405729 3_1:+78632325 None:intergenic
GTTTGATGGGTGGGTTATCT+GGG 0.407957 3_1:+78632830 None:intergenic
GCTAAAAGACTTCTCAATAT+CGG 0.408077 3_1:-78632262 Msa0377950:CDS
CCCTCGCCGGATCTTATCTC+CGG 0.408941 3_1:-78632695 Msa0377950:CDS
TCTATGGGAGAGACTCTTCC+CGG 0.409081 3_1:+78632676 None:intergenic
TTGGATATGGGTTCGGACTT+GGG 0.414993 3_1:+78632793 None:intergenic
TGGAATGCTTTGCTTAGATT+AGG 0.420028 3_1:+78630861 None:intergenic
CAAGGTAAAGAGTATCTGTT+AGG 0.421464 3_1:-78630785 Msa0377950:exon
TTGAGGGGAGTTTGGTATGG+AGG 0.423913 3_1:+78632753 None:intergenic
GATCCGAGCAATGCGGGTGC+TGG 0.424705 3_1:+78632720 None:intergenic
TCACCTATGTTGTTAGACTT+TGG 0.425477 3_1:-78631029 Msa0377950:CDS
TTGTGTCACTAGGTGTCTGC+AGG 0.433374 3_1:-78631728 Msa0377950:intron
GAAACTACGAGGGACATTCT+AGG 0.434329 3_1:-78631590 Msa0377950:CDS
TTTCAACTCATTTCTTGCAT+TGG 0.435190 3_1:+78631484 None:intergenic
TCTTCTTCCTCTTCTGTCCA+AGG 0.435939 3_1:+78631653 None:intergenic
TGCCGGTTGGAAGCTAGATC+AGG 0.436649 3_1:-78631071 Msa0377950:CDS
ACCGGAGAGGGGTTGTGATC+GGG 0.440559 3_1:+78632637 None:intergenic
AGCCTCAAGGTATTGTAAAC+AGG 0.444041 3_1:+78631679 None:intergenic
GCGGAGTTCATCGGCGGCGG+TGG 0.444320 3_1:+78632556 None:intergenic
CTTGAGATGTGTTCAATCAT+CGG 0.448853 3_1:+78631284 None:intergenic
AATACCTTGAGGCTGTTCCT+TGG 0.452602 3_1:-78631670 Msa0377950:CDS
AAAGTGGTGGGCTTGGATAT+GGG 0.452627 3_1:+78632781 None:intergenic
TTGTTGGAAATCATGCTTGA+TGG 0.457343 3_1:-78631239 Msa0377950:CDS
AATAGAGATCGTCTTTGCTT+AGG 0.458824 3_1:+78631405 None:intergenic
CGAAAGAGCAACACCATGTT+CGG 0.462705 3_1:+78632869 None:intergenic
CCATAGAGTGTTGTATTGGC+AGG 0.464323 3_1:-78630644 Msa0377950:three_prime_UTR
TGGTATGGAGGAGGAGAAAG+TGG 0.466478 3_1:+78632765 None:intergenic
TGATAACATCAACTGGTTGT+TGG 0.467994 3_1:-78631255 Msa0377950:CDS
GACAGGTTGATAACATCAAC+TGG 0.468787 3_1:-78631262 Msa0377950:CDS
AGGGGAGTTTGGTATGGAGG+AGG 0.468937 3_1:+78632756 None:intergenic
GTTAATTGCGGATTATAGAA+AGG 0.469473 3_1:-78632410 Msa0377950:CDS
ATCTCCATAGAGTGTTGTAT+TGG 0.475427 3_1:-78630648 Msa0377950:three_prime_UTR
TGTCAACCTTTCAGGATTGA+CGG 0.479755 3_1:+78631325 None:intergenic
AGTAACCTCTAAAACATCAA+TGG 0.487626 3_1:+78632228 None:intergenic
AACACACTTTGTTCATGGAA+TGG 0.488024 3_1:-78630917 Msa0377950:CDS
CGTCTTTGCTTAGGTCAAGA+TGG 0.489915 3_1:+78631414 None:intergenic
TAACAAAATGTGTAGAATTG+AGG 0.490736 3_1:-78632350 Msa0377950:CDS
TCTTCGAGTGGTGGTGGTGG+TGG 0.490921 3_1:-78632382 Msa0377950:CDS
GTGATTGTTGTTGGAATTGG+AGG 0.491769 3_1:+78633042 None:intergenic
AACCGGAGAGGGGTTGTGAT+CGG 0.492279 3_1:+78632636 None:intergenic
GCTTACGGGGTTTGATGGGT+GGG 0.492706 3_1:+78632821 None:intergenic
TTAATTGCGGATTATAGAAA+GGG 0.494426 3_1:-78632409 Msa0377950:CDS
AGAGGGGTTGTGATCGGGAA+CGG 0.494719 3_1:+78632642 None:intergenic
GGTGGGCTTGGATATGGGTT+CGG 0.495015 3_1:+78632786 None:intergenic
GGGTTATCTGGGCTTGAAGG+TGG 0.495636 3_1:+78632841 None:intergenic
GGCTGCAGAGATGCAGAAAA+GGG 0.496864 3_1:-78631004 Msa0377950:CDS
ATGAGTTTGAGAGGGAAGAA+CGG 0.499789 3_1:-78632496 Msa0377950:CDS
AGGTCTTCTTTGTAAAAGCT+CGG 0.499952 3_1:-78631450 Msa0377950:CDS
GACGGAGGTGAATTGAGAAC+CGG 0.499970 3_1:+78632619 None:intergenic
TTGGGCTTACGGGGTTTGAT+GGG 0.505700 3_1:+78632817 None:intergenic
CTGAGTTCATATCTAACCAT+AGG 0.505938 3_1:+78631143 None:intergenic
AAACTTATGCCATTGAATCA+AGG 0.507955 3_1:-78630803 Msa0377950:CDS
AATCCAGCACCCGCATTGCT+CGG 0.508267 3_1:-78632723 Msa0377950:CDS
CCACGAGAAAATTGCAATGC+CGG 0.516914 3_1:-78631088 Msa0377950:CDS
AGGGTCGATCCGAGCAATGC+GGG 0.519510 3_1:+78632714 None:intergenic
AATTCTTCGAGTGGTGGTGG+TGG 0.524260 3_1:-78632385 Msa0377950:CDS
CTCTTCCCGGAGATAAGATC+CGG 0.524725 3_1:+78632689 None:intergenic
TCCCGATCACAACCCCTCTC+CGG 0.526835 3_1:-78632638 Msa0377950:CDS
GCACAATAATGCATCCCCTA+TGG 0.529126 3_1:-78631159 Msa0377950:CDS
GCTGGATTTGGAGCTTTGAG+GGG 0.529230 3_1:+78632738 None:intergenic
GAGAAAATTGCAATGCCGGT+TGG 0.529896 3_1:-78631084 Msa0377950:CDS
ACTCCGACGGCGGAGTTCAT+CGG 0.533515 3_1:+78632547 None:intergenic
TATTGATTATTGAATTCTCT+AGG 0.535778 3_1:-78630606 Msa0377950:three_prime_UTR
GATGTCGAGTTACATTCGGC+TGG 0.536456 3_1:+78631537 None:intergenic
GGTAATTCTTCGAGTGGTGG+TGG 0.537316 3_1:-78632388 Msa0377950:CDS
AATGGTTTCACCACTTCTCA+AGG 0.538484 3_1:-78630899 Msa0377950:CDS
ACGGCGGAGTTCATCGGCGG+CGG 0.541307 3_1:+78632553 None:intergenic
ACATAGGTGAAAACCATGCT+TGG 0.541457 3_1:+78631042 None:intergenic
GTCGGAGTCAGTGTCGGAGA+TGG 0.542344 3_1:-78632532 Msa0377950:CDS
AAAGATTTGCAATTAGGTGA+GGG 0.552544 3_1:-78630702 Msa0377950:three_prime_UTR
GCCCTGATCTAGCTTCCAAC+CGG 0.552789 3_1:+78631069 None:intergenic
GGTGAATTGAGAACCGGAGA+GGG 0.552875 3_1:+78632625 None:intergenic
ATGGAGGAGGAGAAAGTGGT+GGG 0.554708 3_1:+78632769 None:intergenic
TGAGTTCATATCTAACCATA+GGG 0.555019 3_1:+78631144 None:intergenic
AACTAACTAACTAATGGATG+TGG 0.555256 3_1:+78632954 None:intergenic
CACATGCACATGATGGTGTA+AGG 0.556207 3_1:+78632994 None:intergenic
ATGTGAGGATGAGTTTGAGA+GGG 0.556266 3_1:-78632504 Msa0377950:CDS
ACGAGATGTCGAGTTACATT+CGG 0.559548 3_1:+78631533 None:intergenic
TTAATTTATGGGGAAGAGTG+TGG 0.559887 3_1:+78633069 None:intergenic
GGCTGTTCCTTGGACAGAAG+AGG 0.566418 3_1:-78631660 Msa0377950:CDS
CCTCGCCGGATCTTATCTCC+GGG 0.568057 3_1:-78632694 Msa0377950:CDS
GCAGGCATTATGTTCACAAA+GGG 0.570442 3_1:-78631710 Msa0377950:CDS
CCTAATTGCAAATCTTTACA+CGG 0.572250 3_1:+78630708 None:intergenic
TAAAGATTTGCAATTAGGTG+AGG 0.577448 3_1:-78630703 Msa0377950:three_prime_UTR
GATCAGGGCTTCTCCAAGCA+TGG 0.578787 3_1:-78631055 Msa0377950:CDS
GATTGAACACATCTCAAGAC+AGG 0.580199 3_1:-78631279 Msa0377950:CDS
GACTTGGGATTGGGCTTACG+GGG 0.582080 3_1:+78632808 None:intergenic
CCTTTCAGGATTGACGGTGT+CGG 0.585675 3_1:+78631331 None:intergenic
GCAAAGCATTCCAAATTTGG+TGG 0.586003 3_1:-78630851 Msa0377950:CDS
CAGCCAAAGTCTAACAACAT+AGG 0.586068 3_1:+78631026 None:intergenic
TTTCACCACTTCTCAAGGCA+TGG 0.586801 3_1:-78630894 Msa0377950:CDS
GATGTGAGGATGAGTTTGAG+AGG 0.587039 3_1:-78632505 Msa0377950:CDS
TGGAGGCGATTTAATTTATG+GGG 0.587171 3_1:+78633059 None:intergenic
AGCAACACCATGTTCGGTGT+CGG 0.587244 3_1:+78632875 None:intergenic
AAGATTTGCAATTAGGTGAG+GGG 0.590623 3_1:-78630701 Msa0377950:three_prime_UTR
CCGCCGATGAACTCCGCCGT+CGG 0.590734 3_1:-78632550 Msa0377950:CDS
ACGGCGGCAGAGTCTTCTAT+GGG 0.600004 3_1:+78632661 None:intergenic
GTCCTGTTTACAATACCTTG+AGG 0.601459 3_1:-78631681 Msa0377950:CDS
CGGAAGCTACGAGATCTTGA+CGG 0.605422 3_1:+78632601 None:intergenic
ATGTCGAGTTACATTCGGCT+GGG 0.606626 3_1:+78631538 None:intergenic
TCTGATCAGCCTCTTTGAGG+AGG 0.606748 3_1:-78631357 Msa0377950:CDS
ATCGACGCCGACACCGAACA+TGG 0.608753 3_1:-78632882 Msa0377950:CDS
TCCGACACTGACTCCGACGG+CGG 0.610110 3_1:+78632537 None:intergenic
TTGCTCGGATCGACCCTCGC+CGG 0.610784 3_1:-78632708 Msa0377950:CDS
CAGTGCCATGCCTTGAGAAG+TGG 0.610868 3_1:+78630889 None:intergenic
GCCGGTTGGAAGCTAGATCA+GGG 0.611000 3_1:-78631070 Msa0377950:CDS
AGAAAGGGTAATTCTTCGAG+TGG 0.615946 3_1:-78632394 Msa0377950:CDS
AGTTTGAGAGGGAAGAACGG+TGG 0.617140 3_1:-78632493 Msa0377950:CDS
TGCAGGCATTATGTTCACAA+AGG 0.618116 3_1:-78631711 Msa0377950:CDS
GGGGTTGTGATCGGGAACGG+CGG 0.618841 3_1:+78632645 None:intergenic
TCCGCCGTCGGAGTCAGTGT+CGG 0.619090 3_1:-78632538 Msa0377950:CDS
CTGTCCAAGGAACAGCCTCA+AGG 0.619180 3_1:+78631666 None:intergenic
TGCATTGGCATTGACACATG+TGG 0.622601 3_1:+78631499 None:intergenic
AAGGGTAATTCTTCGAGTGG+TGG 0.623485 3_1:-78632391 Msa0377950:CDS
CCGACACCGTCAATCCTGAA+AGG 0.628550 3_1:-78631331 Msa0377950:CDS
TATGGAGGAGGAGAAAGTGG+TGG 0.632558 3_1:+78632768 None:intergenic
CCCGGAGATAAGATCCGGCG+AGG 0.636909 3_1:+78632694 None:intergenic
TGGGTTGGGTGAAGAAAACG+AGG 0.637664 3_1:+78633095 None:intergenic
TGAACTCAGTAGAGTTTCAG+CGG 0.639941 3_1:-78631129 Msa0377950:CDS
CTACGAGGGACATTCTAGGA+AGG 0.640215 3_1:-78631586 Msa0377950:CDS
TTGGAGCGGTAATAGGTGCA+CGG 0.641085 3_1:+78632581 None:intergenic
TGTCGGATGCCTCCTCAAAG+AGG 0.642194 3_1:+78631348 None:intergenic
ACTGCTGCACATGCACATGA+TGG 0.650779 3_1:+78632987 None:intergenic
CCGGAGATAAGATCCGGCGA+GGG 0.655444 3_1:+78632695 None:intergenic
CGGCGGCGGTGGAATTGGAG+CGG 0.663825 3_1:+78632567 None:intergenic
TCGGAGATGGATTTGATGTG+AGG 0.666434 3_1:-78632519 Msa0377950:CDS
GAGGGTCGATCCGAGCAATG+CGG 0.667976 3_1:+78632713 None:intergenic
ATGCACATGATGGTGTAAGG+AGG 0.668126 3_1:+78632997 None:intergenic
GTGAATTGAGAACCGGAGAG+GGG 0.669951 3_1:+78632626 None:intergenic
AGGTGAATTGAGAACCGGAG+AGG 0.673408 3_1:+78632624 None:intergenic
GTTTGATGATGAAACTACGA+GGG 0.673909 3_1:-78631600 Msa0377950:CDS
ATCTCCGACACTGACTCCGA+CGG 0.680633 3_1:+78632534 None:intergenic
GCTTGATGGACAAATAGCAG+AGG 0.691301 3_1:-78631225 Msa0377950:CDS
TCAGAGAGTCAATACACGAG+TGG 0.703997 3_1:+78631375 None:intergenic
CCGACGGCGGAGTTCATCGG+CGG 0.705502 3_1:+78632550 None:intergenic
GAGTTCATATCTAACCATAG+GGG 0.716962 3_1:+78631145 None:intergenic
AAGCTACGAGATCTTGACGG+AGG 0.741868 3_1:+78632604 None:intergenic
AGTTTGATGATGAAACTACG+AGG 0.766574 3_1:-78631601 Msa0377950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTTATGATTTAAGAAAA+TGG + chr3_1:78631556-78631575 None:intergenic 10.0%
!!! TTAATTTAATAGTATTTTGT+AGG - chr3_1:78631766-78631785 Msa0377950:intron 10.0%
!!! TTCGTTTATTTTATTGTTTT+GGG - chr3_1:78633181-78633200 Msa0377950:five_prime_UTR 15.0%
!! TTATGATTTAAGAAAATGGA+AGG + chr3_1:78631552-78631571 None:intergenic 20.0%
!! AAATTGATGCATTAATATCT+AGG + chr3_1:78631606-78631625 None:intergenic 20.0%
!! TTTACTTTATATGCAATAGT+AGG - chr3_1:78631692-78631711 Msa0377950:CDS 20.0%
!! TTACTTTATATGCAATAGTA+GGG - chr3_1:78631693-78631712 Msa0377950:CDS 20.0%
!!! ATTTTAATCAGTTTGAAGAT+TGG - chr3_1:78631820-78631839 Msa0377950:intron 20.0%
!!! CAATTGTTTTTTCTTACATA+TGG - chr3_1:78631988-78632007 Msa0377950:intron 20.0%
!! TTCAATAATCAATACCATTT+AGG + chr3_1:78633137-78633156 None:intergenic 20.0%
!!! TATTGATTATTGAATTCTCT+AGG - chr3_1:78633143-78633162 Msa0377950:five_prime_UTR 20.0%
!!! CTTCGTTTATTTTATTGTTT+TGG - chr3_1:78633180-78633199 Msa0377950:five_prime_UTR 20.0%
! TTTGTAAAAGTGATTGTTGT+TGG + chr3_1:78630719-78630738 None:intergenic 25.0%
! CTAACTAACTAACTAACTAA+TGG + chr3_1:78630804-78630823 None:intergenic 25.0%
!! TTAATTGCGGATTATAGAAA+GGG - chr3_1:78631340-78631359 Msa0377950:CDS 25.0%
! TAACAAAATGTGTAGAATTG+AGG - chr3_1:78631399-78631418 Msa0377950:CDS 25.0%
! TGCATTAATATCTAGGTTAA+AGG + chr3_1:78631599-78631618 None:intergenic 25.0%
!! GTGATTAGTCAAGATTATTA+TGG - chr3_1:78631653-78631672 Msa0377950:CDS 25.0%
!! AATTAATGCATTGACAAACA+AGG + chr3_1:78631752-78631771 None:intergenic 25.0%
! AAGATTGGCATGAAATTAAA+TGG - chr3_1:78631835-78631854 Msa0377950:intron 25.0%
! AGATTGGCATGAAATTAAAT+GGG - chr3_1:78631836-78631855 Msa0377950:intron 25.0%
!! GGAAATTTTTATTACCTTGA+AGG - chr3_1:78631857-78631876 Msa0377950:intron 25.0%
!!! ATAGTTGATAATGTTTTTGC+TGG - chr3_1:78631963-78631982 Msa0377950:intron 25.0%
!!! TATTGTGCATTTTAAGAAGT+TGG + chr3_1:78632578-78632597 None:intergenic 25.0%
AATCCAATCACAAACGAAAA+TGG - chr3_1:78630551-78630570 Msa0377950:three_prime_UTR 30.0%
! TTGGAGGCGATTTAATTTAT+GGG + chr3_1:78630694-78630713 None:intergenic 30.0%
! ATTGGAGGCGATTTAATTTA+TGG + chr3_1:78630695-78630714 None:intergenic 30.0%
! AAAGTGATTGTTGTTGGAAT+TGG + chr3_1:78630713-78630732 None:intergenic 30.0%
! AACTAACTAACTAATGGATG+TGG + chr3_1:78630798-78630817 None:intergenic 30.0%
AGTTAGTTAGAGAGAGAAAA+TGG - chr3_1:78630814-78630833 Msa0377950:CDS 30.0%
! AGCAATTTTATGCGCTAATT+CGG - chr3_1:78631303-78631322 Msa0377950:CDS 30.0%
! GTTAATTGCGGATTATAGAA+AGG - chr3_1:78631339-78631358 Msa0377950:CDS 30.0%
!! GTTCCTGAAGTTGATAATTT+GGG - chr3_1:78631421-78631440 Msa0377950:CDS 30.0%
GCTAAAAGACTTCTCAATAT+CGG - chr3_1:78631487-78631506 Msa0377950:CDS 30.0%
!! TAGATCCATTGATGTTTTAG+AGG - chr3_1:78631516-78631535 Msa0377950:CDS 30.0%
!! AGTAACCTCTAAAACATCAA+TGG + chr3_1:78631524-78631543 None:intergenic 30.0%
AATATCTAGGTTAAAGGCAA+AGG + chr3_1:78631593-78631612 None:intergenic 30.0%
TTATTACCTTGAAGGAAGTA+TGG - chr3_1:78631865-78631884 Msa0377950:intron 30.0%
TTTCAACTCATTTCTTGCAT+TGG + chr3_1:78632268-78632287 None:intergenic 30.0%
GAGTTGAAATCACTAGTTAA+AGG - chr3_1:78632279-78632298 Msa0377950:CDS 30.0%
!!! TCTTTTTTTGTCAACCTTTC+AGG + chr3_1:78632435-78632454 None:intergenic 30.0%
TGAGTTCATATCTAACCATA+GGG + chr3_1:78632608-78632627 None:intergenic 30.0%
! TGATATAAAGGTTTTGCAAG+AGG - chr3_1:78632770-78632789 Msa0377950:CDS 30.0%
!! AAAGTGTGTTGTTGCTTTAA+AGG + chr3_1:78632822-78632841 None:intergenic 30.0%
! TAAGCAAAGCATTCCAAATT+TGG - chr3_1:78632895-78632914 Msa0377950:CDS 30.0%
AAACTTATGCCATTGAATCA+AGG - chr3_1:78632946-78632965 Msa0377950:five_prime_UTR 30.0%
TACTCTTTACCTTGATTCAA+TGG + chr3_1:78632958-78632977 None:intergenic 30.0%
ATTGATACTGTCAGAATCTT+GGG + chr3_1:78632992-78633011 None:intergenic 30.0%
TATTGATACTGTCAGAATCT+TGG + chr3_1:78632993-78633012 None:intergenic 30.0%
CCTAATTGCAAATCTTTACA+CGG + chr3_1:78633044-78633063 None:intergenic 30.0%
TAAAGATTTGCAATTAGGTG+AGG - chr3_1:78633046-78633065 Msa0377950:five_prime_UTR 30.0%
AAAGATTTGCAATTAGGTGA+GGG - chr3_1:78633047-78633066 Msa0377950:five_prime_UTR 30.0%
!!! TTGCCATTTTCGTTTGTGAT+TGG + chr3_1:78630557-78630576 None:intergenic 35.0%
! TTTTCTGCTTGCTTAAGCTT+TGG + chr3_1:78630611-78630630 None:intergenic 35.0%
TTAATTTATGGGGAAGAGTG+TGG + chr3_1:78630683-78630702 None:intergenic 35.0%
! TGGAGGCGATTTAATTTATG+GGG + chr3_1:78630693-78630712 None:intergenic 35.0%
! AATTTTATGCGCTAATTCGG+AGG - chr3_1:78631306-78631325 Msa0377950:CDS 35.0%
!! GGTTCCTGAAGTTGATAATT+TGG - chr3_1:78631420-78631439 Msa0377950:CDS 35.0%
ACACCCAAATTATCAACTTC+AGG + chr3_1:78631427-78631446 None:intergenic 35.0%
!!! TTGTCTGTTTTTGTGTCACT+AGG - chr3_1:78632011-78632030 Msa0377950:intron 35.0%
!! AGTTTGATGATGAAACTACG+AGG - chr3_1:78632148-78632167 Msa0377950:intron 35.0%
!! GTTTGATGATGAAACTACGA+GGG - chr3_1:78632149-78632168 Msa0377950:intron 35.0%
AGGTCTTCTTTGTAAAAGCT+CGG - chr3_1:78632299-78632318 Msa0377950:CDS 35.0%
AATAGAGATCGTCTTTGCTT+AGG + chr3_1:78632347-78632366 None:intergenic 35.0%
CTTGAGATGTGTTCAATCAT+CGG + chr3_1:78632468-78632487 None:intergenic 35.0%
TGATAACATCAACTGGTTGT+TGG - chr3_1:78632494-78632513 Msa0377950:CDS 35.0%
TTGTTGGAAATCATGCTTGA+TGG - chr3_1:78632510-78632529 Msa0377950:CDS 35.0%
! ACAAATAGCAGAGGATTTTG+TGG - chr3_1:78632533-78632552 Msa0377950:CDS 35.0%
! CAGAGGATTTTGTGGATATA+TGG - chr3_1:78632541-78632560 Msa0377950:CDS 35.0%
GAGTTCATATCTAACCATAG+GGG + chr3_1:78632607-78632626 None:intergenic 35.0%
CTGAGTTCATATCTAACCAT+AGG + chr3_1:78632609-78632628 None:intergenic 35.0%
TCACCTATGTTGTTAGACTT+TGG - chr3_1:78632720-78632739 Msa0377950:CDS 35.0%
CAGAAAAGGGCTTGATATAA+AGG - chr3_1:78632758-78632777 Msa0377950:CDS 35.0%
AACACACTTTGTTCATGGAA+TGG - chr3_1:78632832-78632851 Msa0377950:CDS 35.0%
TGGAATGCTTTGCTTAGATT+AGG + chr3_1:78632891-78632910 None:intergenic 35.0%
!! TGGCGTAGATCATTTTTAAG+AGG - chr3_1:78632918-78632937 Msa0377950:CDS 35.0%
!! CAAGGTAAAGAGTATCTGTT+AGG - chr3_1:78632964-78632983 Msa0377950:five_prime_UTR 35.0%
CGGTACACAAAAAGTTAAAG+TGG + chr3_1:78633024-78633043 None:intergenic 35.0%
CCGTGTAAAGATTTGCAATT+AGG - chr3_1:78633041-78633060 Msa0377950:five_prime_UTR 35.0%
AAGATTTGCAATTAGGTGAG+GGG - chr3_1:78633048-78633067 Msa0377950:five_prime_UTR 35.0%
!! ATCTCCATAGAGTGTTGTAT+TGG - chr3_1:78633101-78633120 Msa0377950:five_prime_UTR 35.0%
TTGGCAGGTTAATTCCTAAA+TGG - chr3_1:78633120-78633139 Msa0377950:five_prime_UTR 35.0%
! GTGATTGTTGTTGGAATTGG+AGG + chr3_1:78630710-78630729 None:intergenic 40.0%
ATGTGAGGATGAGTTTGAGA+GGG - chr3_1:78631245-78631264 Msa0377950:CDS 40.0%
ATGAGTTTGAGAGGGAAGAA+CGG - chr3_1:78631253-78631272 Msa0377950:CDS 40.0%
AGAAAGGGTAATTCTTCGAG+TGG - chr3_1:78631355-78631374 Msa0377950:CDS 40.0%
GTAGGCAAGTCTTTCATTTG+AGG - chr3_1:78631784-78631803 Msa0377950:intron 40.0%
! TTGAAGGAAGTATGGAGAGA+CGG - chr3_1:78631873-78631892 Msa0377950:intron 40.0%
TGCAGGCATTATGTTCACAA+AGG - chr3_1:78632038-78632057 Msa0377950:intron 40.0%
GCAGGCATTATGTTCACAAA+GGG - chr3_1:78632039-78632058 Msa0377950:intron 40.0%
GTCCTGTTTACAATACCTTG+AGG - chr3_1:78632068-78632087 Msa0377950:intron 40.0%
!! AGCCTCAAGGTATTGTAAAC+AGG + chr3_1:78632073-78632092 None:intergenic 40.0%
ACGAGATGTCGAGTTACATT+CGG + chr3_1:78632219-78632238 None:intergenic 40.0%
TGTCAACCTTTCAGGATTGA+CGG + chr3_1:78632427-78632446 None:intergenic 40.0%
GATTGAACACATCTCAAGAC+AGG - chr3_1:78632470-78632489 Msa0377950:CDS 40.0%
!! GACAGGTTGATAACATCAAC+TGG - chr3_1:78632487-78632506 Msa0377950:CDS 40.0%
TGAACTCAGTAGAGTTTCAG+CGG - chr3_1:78632620-78632639 Msa0377950:CDS 40.0%
ACATAGGTGAAAACCATGCT+TGG + chr3_1:78632710-78632729 None:intergenic 40.0%
CAGCCAAAGTCTAACAACAT+AGG + chr3_1:78632726-78632745 None:intergenic 40.0%
CTATGTTGTTAGACTTTGGC+TGG - chr3_1:78632724-78632743 Msa0377950:CDS 40.0%
! AAAGGTTTTGCAAGAGGCTA+TGG - chr3_1:78632776-78632795 Msa0377950:CDS 40.0%
! AAGGTTTTGCAAGAGGCTAT+GGG - chr3_1:78632777-78632796 Msa0377950:CDS 40.0%
GCAACAACACACTTTGTTCA+TGG - chr3_1:78632827-78632846 Msa0377950:CDS 40.0%
AATGGTTTCACCACTTCTCA+AGG - chr3_1:78632850-78632869 Msa0377950:CDS 40.0%
! GCAAAGCATTCCAAATTTGG+TGG - chr3_1:78632898-78632917 Msa0377950:CDS 40.0%
ATGATCTACGCCACCAAATT+TGG + chr3_1:78632911-78632930 None:intergenic 40.0%
! GCTTGCTTAAGCTTTGGCTT+TGG + chr3_1:78630605-78630624 None:intergenic 45.0%
!!! GAAGAGTGTGGTTTTGGGTT+GGG + chr3_1:78630671-78630690 None:intergenic 45.0%
!! ATGGGGAAGAGTGTGGTTTT+GGG + chr3_1:78630676-78630695 None:intergenic 45.0%
!! TATGGGGAAGAGTGTGGTTT+TGG + chr3_1:78630677-78630696 None:intergenic 45.0%
! ATGCACATGATGGTGTAAGG+AGG + chr3_1:78630755-78630774 None:intergenic 45.0%
! CACATGCACATGATGGTGTA+AGG + chr3_1:78630758-78630777 None:intergenic 45.0%
CGAAAGAGCAACACCATGTT+CGG + chr3_1:78630883-78630902 None:intergenic 45.0%
!! GTTTGATGGGTGGGTTATCT+GGG + chr3_1:78630922-78630941 None:intergenic 45.0%
TTGGATATGGGTTCGGACTT+GGG + chr3_1:78630959-78630978 None:intergenic 45.0%
!! AAAGTGGTGGGCTTGGATAT+GGG + chr3_1:78630971-78630990 None:intergenic 45.0%
! TGCTGGATTTGGAGCTTTGA+GGG + chr3_1:78631015-78631034 None:intergenic 45.0%
! TCGGAGATGGATTTGATGTG+AGG - chr3_1:78631230-78631249 Msa0377950:CDS 45.0%
GATGTGAGGATGAGTTTGAG+AGG - chr3_1:78631244-78631263 Msa0377950:CDS 45.0%
! CGCTAATTCGGAGGTTTTTG+CGG - chr3_1:78631315-78631334 Msa0377950:CDS 45.0%
! GCTAATTCGGAGGTTTTTGC+GGG - chr3_1:78631316-78631335 Msa0377950:CDS 45.0%
! CTAATTCGGAGGTTTTTGCG+GGG - chr3_1:78631317-78631336 Msa0377950:CDS 45.0%
! GGTTTTTGCGGGGTTAATTG+CGG - chr3_1:78631327-78631346 Msa0377950:CDS 45.0%
AAGGGTAATTCTTCGAGTGG+TGG - chr3_1:78631358-78631377 Msa0377950:CDS 45.0%
GTCTCTCCATACTTCCTTCA+AGG + chr3_1:78631874-78631893 None:intergenic 45.0%
AATACCTTGAGGCTGTTCCT+TGG - chr3_1:78632079-78632098 Msa0377950:intron 45.0%
TCTTCTTCCTCTTCTGTCCA+AGG + chr3_1:78632099-78632118 None:intergenic 45.0%
GAAACTACGAGGGACATTCT+AGG - chr3_1:78632159-78632178 Msa0377950:intron 45.0%
ATGTCGAGTTACATTCGGCT+GGG + chr3_1:78632214-78632233 None:intergenic 45.0%
!! TGCATTGGCATTGACACATG+TGG + chr3_1:78632253-78632272 None:intergenic 45.0%
CGTCTTTGCTTAGGTCAAGA+TGG + chr3_1:78632338-78632357 None:intergenic 45.0%
TCAGAGAGTCAATACACGAG+TGG + chr3_1:78632377-78632396 None:intergenic 45.0%
! GCTTGATGGACAAATAGCAG+AGG - chr3_1:78632524-78632543 Msa0377950:CDS 45.0%
GCACAATAATGCATCCCCTA+TGG - chr3_1:78632590-78632609 Msa0377950:CDS 45.0%
! TTGCAATTTTCTCGTGGCCA+TGG + chr3_1:78632658-78632677 None:intergenic 45.0%
CCACGAGAAAATTGCAATGC+CGG - chr3_1:78632661-78632680 Msa0377950:CDS 45.0%
GAGAAAATTGCAATGCCGGT+TGG - chr3_1:78632665-78632684 Msa0377950:CDS 45.0%
TTTCACCACTTCTCAAGGCA+TGG - chr3_1:78632855-78632874 Msa0377950:CDS 45.0%
CCTGCCAATACAACACTCTA+TGG + chr3_1:78633108-78633127 None:intergenic 45.0%
!! CCATAGAGTGTTGTATTGGC+AGG - chr3_1:78633105-78633124 Msa0377950:five_prime_UTR 45.0%
! TGGGTTGGGTGAAGAAAACG+AGG + chr3_1:78630657-78630676 None:intergenic 50.0%
!!! GGAAGAGTGTGGTTTTGGGT+TGG + chr3_1:78630672-78630691 None:intergenic 50.0%
ACTGCTGCACATGCACATGA+TGG + chr3_1:78630765-78630784 None:intergenic 50.0%
!! AGCAACACCATGTTCGGTGT+CGG + chr3_1:78630877-78630896 None:intergenic 50.0%
!! GGTTTGATGGGTGGGTTATC+TGG + chr3_1:78630923-78630942 None:intergenic 50.0%
TTGGGCTTACGGGGTTTGAT+GGG + chr3_1:78630935-78630954 None:intergenic 50.0%
ATTGGGCTTACGGGGTTTGA+TGG + chr3_1:78630936-78630955 None:intergenic 50.0%
ATGGGTTCGGACTTGGGATT+GGG + chr3_1:78630953-78630972 None:intergenic 50.0%
TATGGGTTCGGACTTGGGAT+TGG + chr3_1:78630954-78630973 None:intergenic 50.0%
CTTGGATATGGGTTCGGACT+TGG + chr3_1:78630960-78630979 None:intergenic 50.0%
!! GAAAGTGGTGGGCTTGGATA+TGG + chr3_1:78630972-78630991 None:intergenic 50.0%
ATGGAGGAGGAGAAAGTGGT+GGG + chr3_1:78630983-78631002 None:intergenic 50.0%
TATGGAGGAGGAGAAAGTGG+TGG + chr3_1:78630984-78631003 None:intergenic 50.0%
TGGTATGGAGGAGGAGAAAG+TGG + chr3_1:78630987-78631006 None:intergenic 50.0%
TTGAGGGGAGTTTGGTATGG+AGG + chr3_1:78630999-78631018 None:intergenic 50.0%
!! GCTTTGAGGGGAGTTTGGTA+TGG + chr3_1:78631002-78631021 None:intergenic 50.0%
!! TTGGAGCTTTGAGGGGAGTT+TGG + chr3_1:78631007-78631026 None:intergenic 50.0%
!! GCTGGATTTGGAGCTTTGAG+GGG + chr3_1:78631014-78631033 None:intergenic 50.0%
! GTGCTGGATTTGGAGCTTTG+AGG + chr3_1:78631016-78631035 None:intergenic 50.0%
CTCTTCCCGGAGATAAGATC+CGG + chr3_1:78631063-78631082 None:intergenic 50.0%
TCTATGGGAGAGACTCTTCC+CGG + chr3_1:78631076-78631095 None:intergenic 50.0%
GTGAATTGAGAACCGGAGAG+GGG + chr3_1:78631126-78631145 None:intergenic 50.0%
GGTGAATTGAGAACCGGAGA+GGG + chr3_1:78631127-78631146 None:intergenic 50.0%
AGGTGAATTGAGAACCGGAG+AGG + chr3_1:78631128-78631147 None:intergenic 50.0%
GACGGAGGTGAATTGAGAAC+CGG + chr3_1:78631133-78631152 None:intergenic 50.0%
AAGCTACGAGATCTTGACGG+AGG + chr3_1:78631148-78631167 None:intergenic 50.0%
CGGAAGCTACGAGATCTTGA+CGG + chr3_1:78631151-78631170 None:intergenic 50.0%
TTGGAGCGGTAATAGGTGCA+CGG + chr3_1:78631171-78631190 None:intergenic 50.0%
GGTGGAATTGGAGCGGTAAT+AGG + chr3_1:78631178-78631197 None:intergenic 50.0%
AGTTTGAGAGGGAAGAACGG+TGG - chr3_1:78631256-78631275 Msa0377950:CDS 50.0%
GGTAATTCTTCGAGTGGTGG+TGG - chr3_1:78631361-78631380 Msa0377950:CDS 50.0%
!! AATTCTTCGAGTGGTGGTGG+TGG - chr3_1:78631364-78631383 Msa0377950:CDS 50.0%
TATGGAGAGACGGTGAGACA+TGG - chr3_1:78631883-78631902 Msa0377950:intron 50.0%
! TTGTGTCACTAGGTGTCTGC+AGG - chr3_1:78632021-78632040 Msa0377950:intron 50.0%
! CTACGAGGGACATTCTAGGA+AGG - chr3_1:78632163-78632182 Msa0377950:intron 50.0%
CATTCGGCTGGGAATCTTCT+GGG + chr3_1:78632203-78632222 None:intergenic 50.0%
ACATTCGGCTGGGAATCTTC+TGG + chr3_1:78632204-78632223 None:intergenic 50.0%
GATGTCGAGTTACATTCGGC+TGG + chr3_1:78632215-78632234 None:intergenic 50.0%
CTCTCTGATCAGCCTCTTTG+AGG - chr3_1:78632389-78632408 Msa0377950:CDS 50.0%
! TCTGATCAGCCTCTTTGAGG+AGG - chr3_1:78632392-78632411 Msa0377950:CDS 50.0%
CCTTTCAGGATTGACGGTGT+CGG + chr3_1:78632421-78632440 None:intergenic 50.0%
! AGCGGTTCTGTTTGTTGCCA+TGG - chr3_1:78632638-78632657 Msa0377950:CDS 50.0%
! CCGGCATTGCAATTTTCTCG+TGG + chr3_1:78632664-78632683 None:intergenic 50.0%
TGGCTGCAGAGATGCAGAAA+AGG - chr3_1:78632744-78632763 Msa0377950:CDS 50.0%
GGCTGCAGAGATGCAGAAAA+GGG - chr3_1:78632745-78632764 Msa0377950:CDS 50.0%
GGGTTATCTGGGCTTGAAGG+TGG + chr3_1:78630911-78630930 None:intergenic 55.0%
!! GGTGGGTTATCTGGGCTTGA+AGG + chr3_1:78630914-78630933 None:intergenic 55.0%
! GCTTACGGGGTTTGATGGGT+GGG + chr3_1:78630931-78630950 None:intergenic 55.0%
GACTTGGGATTGGGCTTACG+GGG + chr3_1:78630944-78630963 None:intergenic 55.0%
GGACTTGGGATTGGGCTTAC+GGG + chr3_1:78630945-78630964 None:intergenic 55.0%
CGGACTTGGGATTGGGCTTA+CGG + chr3_1:78630946-78630965 None:intergenic 55.0%
! GGTGGGCTTGGATATGGGTT+CGG + chr3_1:78630966-78630985 None:intergenic 55.0%
AGGGGAGTTTGGTATGGAGG+AGG + chr3_1:78630996-78631015 None:intergenic 55.0%
!! AGCAATGCGGGTGCTGGATT+TGG + chr3_1:78631026-78631045 None:intergenic 55.0%
AATCCAGCACCCGCATTGCT+CGG - chr3_1:78631026-78631045 Msa0377950:CDS 55.0%
ACGGCGGCAGAGTCTTCTAT+GGG + chr3_1:78631091-78631110 None:intergenic 55.0%
AACGGCGGCAGAGTCTTCTA+TGG + chr3_1:78631092-78631111 None:intergenic 55.0%
AGAGGGGTTGTGATCGGGAA+CGG + chr3_1:78631110-78631129 None:intergenic 55.0%
AACCGGAGAGGGGTTGTGAT+CGG + chr3_1:78631116-78631135 None:intergenic 55.0%
!! ATCTCCGACACTGACTCCGA+CGG + chr3_1:78631218-78631237 None:intergenic 55.0%
CTGTCCAAGGAACAGCCTCA+AGG + chr3_1:78632086-78632105 None:intergenic 55.0%
GGCTGTTCCTTGGACAGAAG+AGG - chr3_1:78632089-78632108 Msa0377950:intron 55.0%
TGTCGGATGCCTCCTCAAAG+AGG + chr3_1:78632404-78632423 None:intergenic 55.0%
CCGACACCGTCAATCCTGAA+AGG - chr3_1:78632418-78632437 Msa0377950:CDS 55.0%
! TGCCGGTTGGAAGCTAGATC+AGG - chr3_1:78632678-78632697 Msa0377950:CDS 55.0%
GCCGGTTGGAAGCTAGATCA+GGG - chr3_1:78632679-78632698 Msa0377950:CDS 55.0%
! GCCCTGATCTAGCTTCCAAC+CGG + chr3_1:78632683-78632702 None:intergenic 55.0%
GATCAGGGCTTCTCCAAGCA+TGG - chr3_1:78632694-78632713 Msa0377950:CDS 55.0%
CAGTGCCATGCCTTGAGAAG+TGG + chr3_1:78632863-78632882 None:intergenic 55.0%
ATCGACGCCGACACCGAACA+TGG - chr3_1:78630867-78630886 Msa0377950:CDS 60.0%
GGCTTACGGGGTTTGATGGG+TGG + chr3_1:78630932-78630951 None:intergenic 60.0%
!! GGAGGAGAAAGTGGTGGGCT+TGG + chr3_1:78630978-78630997 None:intergenic 60.0%
AGGGTCGATCCGAGCAATGC+GGG + chr3_1:78631038-78631057 None:intergenic 60.0%
GAGGGTCGATCCGAGCAATG+CGG + chr3_1:78631039-78631058 None:intergenic 60.0%
CCGGAGATAAGATCCGGCGA+GGG + chr3_1:78631057-78631076 None:intergenic 60.0%
CCCTCGCCGGATCTTATCTC+CGG - chr3_1:78631054-78631073 Msa0377950:CDS 60.0%
CCTCGCCGGATCTTATCTCC+GGG - chr3_1:78631055-78631074 Msa0377950:CDS 60.0%
TCCCGATCACAACCCCTCTC+CGG - chr3_1:78631111-78631130 Msa0377950:CDS 60.0%
ACCGGAGAGGGGTTGTGATC+GGG + chr3_1:78631115-78631134 None:intergenic 60.0%
TTCATCGGCGGCGGTGGAAT+TGG + chr3_1:78631190-78631209 None:intergenic 60.0%
ACTCCGACGGCGGAGTTCAT+CGG + chr3_1:78631205-78631224 None:intergenic 60.0%
! GTCGGAGTCAGTGTCGGAGA+TGG - chr3_1:78631217-78631236 Msa0377950:CDS 60.0%
!! TCTTCGAGTGGTGGTGGTGG+TGG - chr3_1:78631367-78631386 Msa0377950:CDS 60.0%
GGAGAGACGGTGAGACATGG+AGG - chr3_1:78631886-78631905 Msa0377950:intron 60.0%
GATCCGAGCAATGCGGGTGC+TGG + chr3_1:78631032-78631051 None:intergenic 65.0%
TTGCTCGGATCGACCCTCGC+CGG - chr3_1:78631041-78631060 Msa0377950:CDS 65.0%
CCCGGAGATAAGATCCGGCG+AGG + chr3_1:78631058-78631077 None:intergenic 65.0%
GGGGTTGTGATCGGGAACGG+CGG + chr3_1:78631107-78631126 None:intergenic 65.0%
TCCGCCGTCGGAGTCAGTGT+CGG - chr3_1:78631211-78631230 Msa0377950:CDS 65.0%
!! TCCGACACTGACTCCGACGG+CGG + chr3_1:78631215-78631234 None:intergenic 65.0%
!! TCGAGTGGTGGTGGTGGTGG+TGG - chr3_1:78631370-78631389 Msa0377950:CDS 65.0%
!! AGTGGTGGTGGTGGTGGTGG+TGG - chr3_1:78631373-78631392 Msa0377950:CDS 65.0%
CGGCGGCGGTGGAATTGGAG+CGG + chr3_1:78631185-78631204 None:intergenic 70.0%
ACGGCGGAGTTCATCGGCGG+CGG + chr3_1:78631199-78631218 None:intergenic 70.0%
CCGACGGCGGAGTTCATCGG+CGG + chr3_1:78631202-78631221 None:intergenic 70.0%
CCGCCGATGAACTCCGCCGT+CGG - chr3_1:78631199-78631218 Msa0377950:CDS 70.0%
GCGGAGTTCATCGGCGGCGG+TGG + chr3_1:78631196-78631215 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78630549 78633222 78630549 ID=Msa0377950;Name=Msa0377950
chr3_1 mRNA 78630549 78633222 78630549 ID=Msa0377950-mRNA-1;Parent=Msa0377950;Name=Msa0377950-mRNA-1;_AED=0.03;_eAED=0.03;_QI=284|1|1|1|1|1|2|251|547
chr3_1 exon 78630549 78631738 78630549 ID=Msa0377950-mRNA-1:exon:18960;Parent=Msa0377950-mRNA-1
chr3_1 exon 78632234 78633222 78632234 ID=Msa0377950-mRNA-1:exon:18959;Parent=Msa0377950-mRNA-1
chr3_1 five_prime_UTR 78632939 78633222 78632939 ID=Msa0377950-mRNA-1:five_prime_utr;Parent=Msa0377950-mRNA-1
chr3_1 CDS 78632234 78632938 78632234 ID=Msa0377950-mRNA-1:cds;Parent=Msa0377950-mRNA-1
chr3_1 CDS 78630800 78631738 78630800 ID=Msa0377950-mRNA-1:cds;Parent=Msa0377950-mRNA-1
chr3_1 three_prime_UTR 78630549 78630799 78630549 ID=Msa0377950-mRNA-1:three_prime_utr;Parent=Msa0377950-mRNA-1
Gene Sequence

>Msa0377950

ATGGATTCTTCTTCTTCTTCTTCTTCTTCATATCATCGACGCCGACACCGAACATGGTGTTGCTCTTTCGCTGTTCCACCTTCAAGCCCAGATAACCCACCCATCAAACCCCGTAAGCCCAATCCCAAGTCCGAACCCATATCCAAGCCCACCACTTTCTCCTCCTCCATACCAAACTCCCCTCAAAGCTCCAAATCCAGCACCCGCATTGCTCGGATCGACCCTCGCCGGATCTTATCTCCGGGAAGAGTCTCTCCCATAGAAGACTCTGCCGCCGTTCCCGATCACAACCCCTCTCCGGTTCTCAATTCACCTCCGTCAAGATCTCGTAGCTTCCGTGCACCTATTACCGCTCCAATTCCACCGCCGCCGATGAACTCCGCCGTCGGAGTCAGTGTCGGAGATGGATTTGATGTGAGGATGAGTTTGAGAGGGAAGAACGGTGGTTGTATTGTTTTAGAGCTTAATTCAGCAATTTTATGCGCTAATTCGGAGGTTTTTGCGGGGTTAATTGCGGATTATAGAAAGGGTAATTCTTCGAGTGGTGGTGGTGGTGGTGGTGGTGTTAACAAAATGTGTAGAATTGAGGTTCCTGAAGTTGATAATTTGGGTGTTTTTAGAGAAACTATTGAGCTTATGTTTGAAGATGATGTTGCTAAAAGACTTCTCAATATCGGTGTTTATAGATCCATTGATGTTTTAGAGGTGTCTGCAGGCATTATGTTCACAAAGGGTGTTTTGTCCTGTTTACAATACCTTGAGGCTGTTCCTTGGACAGAAGAGGAAGAAGAGAAATTAAGAAACTTGTTCACAAGATTTAAGTTTGATGATGAAACTACGAGGGACATTCTAGGAAGGCTTTACTTGCACGACCCAGAAGATTCCCAGCCGAATGTAACTCGACATCTCGTTTGTTCTATCACCACATGTGTCAATGCCAATGCAAGAAATGAGTTGAAATCACTAGTTAAAGGTCTTCTTTGTAAAAGCTCGGTGTATGAGAAGAACCATCTTGACCTAAGCAAAGACGATCTCTATTCTGTTTGCCACTCGTGTATTGACTCTCTGATCAGCCTCTTTGAGGAGGCATCCGACACCGTCAATCCTGAAAGGTTGACAAAAAAAGATACGAATAAACCGATGATTGAACACATCTCAAGACAGGTTGATAACATCAACTGGTTGTTGGAAATCATGCTTGATGGACAAATAGCAGAGGATTTTGTGGATATATGGTCTGATCAGCACCAACTTCTTAAAATGCACAATAATGCATCCCCTATGGTTAGATATGAACTCAGTAGAGTTTCAGCGGTTCTGTTTGTTGCCATGGCCACGAGAAAATTGCAATGCCGGTTGGAAGCTAGATCAGGGCTTCTCCAAGCATGGTTTTCACCTATGTTGTTAGACTTTGGCTGGCTGCAGAGATGCAGAAAAGGGCTTGATATAAAGGTTTTGCAAGAGGCTATGGGTCAGACACTTCTTACTTTGCCTTTAAAGCAACAACACACTTTGTTCATGGAATGGTTTCACCACTTCTCAAGGCATGGCACTGAATGTCCTAATCTAAGCAAAGCATTCCAAATTTGGTGGCGTAGATCATTTTTAAGAGGCTCTGAAACTTATGCCATTGAATCAAGGTAA
Protein sequence

>Msa0377950

MDSSSSSSSSYHRRRHRTWCCSFAVPPSSPDNPPIKPRKPNPKSEPISKPTTFSSSIPNSPQSSKSSTRIARIDPRRILSPGRVSPIEDSAAVPDHNPSPVLNSPPSRSRSFRAPITAPIPPPPMNSAVGVSVGDGFDVRMSLRGKNGGCIVLELNSAILCANSEVFAGLIADYRKGNSSSGGGGGGGVNKMCRIEVPEVDNLGVFRETIELMFEDDVAKRLLNIGVYRSIDVLEVSAGIMFTKGVLSCLQYLEAVPWTEEEEEKLRNLFTRFKFDDETTRDILGRLYLHDPEDSQPNVTRHLVCSITTCVNANARNELKSLVKGLLCKSSVYEKNHLDLSKDDLYSVCHSCIDSLISLFEEASDTVNPERLTKKDTNKPMIEHISRQVDNINWLLEIMLDGQIAEDFVDIWSDQHQLLKMHNNASPMVRYELSRVSAVLFVAMATRKLQCRLEARSGLLQAWFSPMLLDFGWLQRCRKGLDIKVLQEAMGQTLLTLPLKQQHTLFMEWFHHFSRHGTECPNLSKAFQIWWRRSFLRGSETYAIESR*