Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379280 | AES73162.2 | 70.506 | 356 | 69 | 4 | 1 | 356 | 1 | 320 | 2.15e-168 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379280 | sp|Q56X46|MSL2_ARATH | 35.714 | 224 | 104 | 10 | 137 | 341 | 309 | 511 | 1.61e-21 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379280 | G7J537 | 70.506 | 356 | 69 | 4 | 1 | 356 | 1 | 320 | 1.03e-168 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0379280 | Msa0518930 | 0.863822 | 1.892188e-64 | -8.615850e-47 |
| Msa0379280 | Msa0518950 | 0.813515 | 2.461484e-51 | -8.615850e-47 |
| Msa0379280 | Msa0518970 | 0.816922 | 4.307755e-52 | -8.615850e-47 |
| Msa0379280 | Msa0518980 | 0.852391 | 4.760169e-61 | -8.615850e-47 |
| Msa0379280 | Msa1407940 | 0.984893 | 6.634685e-162 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379280 | MtrunA17_Chr3g0132941 | 70.506 | 356 | 69 | 4 | 1 | 356 | 1 | 320 | 1.97e-172 | 483 |
| Msa0379280 | MtrunA17_Chr3g0132931 | 39.004 | 241 | 101 | 10 | 147 | 361 | 327 | 547 | 6.31e-25 | 106 |
| Msa0379280 | MtrunA17_Chr5g0412241 | 39.062 | 192 | 90 | 7 | 137 | 322 | 306 | 476 | 3.62e-21 | 95.1 |
| Msa0379280 | MtrunA17_Chr3g0132961 | 37.255 | 204 | 93 | 8 | 147 | 335 | 330 | 513 | 7.06e-20 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0379280 | AT5G10490.2 | 35.714 | 224 | 104 | 10 | 137 | 341 | 281 | 483 | 1.52e-22 | 99.8 |
| Msa0379280 | AT5G10490.1 | 35.714 | 224 | 104 | 10 | 137 | 341 | 309 | 511 | 1.63e-22 | 99.8 |
| Msa0379280 | AT5G10490.3 | 35.714 | 224 | 104 | 10 | 137 | 341 | 307 | 509 | 1.84e-22 | 99.4 |
| Msa0379280 | AT1G58200.2 | 41.935 | 155 | 64 | 6 | 151 | 299 | 324 | 458 | 2.11e-19 | 90.5 |
| Msa0379280 | AT1G58200.1 | 41.935 | 155 | 64 | 6 | 151 | 299 | 324 | 458 | 2.11e-19 | 90.5 |
Find 106 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGATTAGGAATATAATT+TGG | 0.150146 | 3_1:+80302552 | None:intergenic |
| AAGTAGATACAAACCTTAAT+TGG | 0.176033 | 3_1:+80302741 | None:intergenic |
| GCTCTTTGGGAATCAGAATT+TGG | 0.211636 | 3_1:+80299076 | None:intergenic |
| TTGTCGGCAAACTTGTTATT+AGG | 0.214780 | 3_1:+80302501 | None:intergenic |
| CGATATTATTTATAGGGTTT+TGG | 0.227081 | 3_1:-80303560 | Msa0379280:intron |
| AAGCAATCCTTTCGGATCTT+TGG | 0.245579 | 3_1:-80299258 | Msa0379280:CDS |
| CAATGATATTAACATAATTA+AGG | 0.257707 | 3_1:-80302418 | Msa0379280:intron |
| GTTCTTCCAATTGCAGATAT+TGG | 0.259661 | 3_1:-80301563 | Msa0379280:CDS |
| TAAAGTGGTAAGGGTATAAA+TGG | 0.259968 | 3_1:+80298554 | None:intergenic |
| TTTGGATGTGATTGGCTAAC+TGG | 0.302592 | 3_1:+80299197 | None:intergenic |
| TGTGATTAGGAATATAATTT+GGG | 0.328852 | 3_1:+80302553 | None:intergenic |
| AGTAGATACAAACCTTAATT+GGG | 0.329729 | 3_1:+80302742 | None:intergenic |
| GTGTGTTGATTATGTATATT+AGG | 0.333409 | 3_1:-80298827 | Msa0379280:three_prime_UTR |
| CGATCAGCAAATTTGTGATT+AGG | 0.339725 | 3_1:+80302540 | None:intergenic |
| AGTTTCAGATACAGCTCTTT+GGG | 0.348030 | 3_1:+80299063 | None:intergenic |
| TGAGTAATCCGACTAAGATT+TGG | 0.361136 | 3_1:-80302473 | Msa0379280:CDS |
| CTACAGGTTCATCGACTGTT+TGG | 0.368813 | 3_1:+80299179 | None:intergenic |
| CCTGTTACTTCCCATGAGTT+TGG | 0.379444 | 3_1:-80299037 | Msa0379280:CDS |
| AACTTAGCATCCATAGCTTA+TGG | 0.381217 | 3_1:+80298870 | None:intergenic |
| AAGTTTCAGATACAGCTCTT+TGG | 0.382088 | 3_1:+80299062 | None:intergenic |
| TTACTTCCCATGAGTTTGGC+AGG | 0.385891 | 3_1:-80299033 | Msa0379280:CDS |
| CATCCATAGCTTATGGCATA+TGG | 0.391747 | 3_1:+80298877 | None:intergenic |
| ACTCCGTCATAAGGTTTGTT+TGG | 0.400020 | 3_1:-80298725 | Msa0379280:three_prime_UTR |
| CCAAACTCATGGGAAGTAAC+AGG | 0.412769 | 3_1:+80299037 | None:intergenic |
| ATCAAACCTGGAAAACAAAC+TGG | 0.415504 | 3_1:-80302220 | Msa0379280:CDS |
| GGTTAGACTGTTCGAATCTC+AGG | 0.417102 | 3_1:-80303508 | Msa0379280:intron |
| TTATAAGCTCAAACGCTACT+TGG | 0.417329 | 3_1:+80298600 | None:intergenic |
| ATTTGAAGCTTTCAGCATAC+AGG | 0.418222 | 3_1:+80301537 | None:intergenic |
| CAGCCTAACTTTGATTAAAA+CGG | 0.420195 | 3_1:-80298768 | Msa0379280:three_prime_UTR |
| TTCTTCCACCCCATCGGGAC+TGG | 0.421238 | 3_1:+80303341 | None:intergenic |
| ATTTGGCTTGGACTTATCCT+TGG | 0.430781 | 3_1:+80299093 | None:intergenic |
| CGCTGTTCTGTTAAAACGAA+AGG | 0.436211 | 3_1:-80303777 | Msa0379280:five_prime_UTR |
| GGATGGCACGGATGGAATAC+TGG | 0.437531 | 3_1:-80302787 | Msa0379280:CDS |
| GAAAAGCTTGTACCTGAGAT+TGG | 0.442125 | 3_1:+80303733 | None:intergenic |
| AAGCTAGAAGCTCATTTATG+TGG | 0.449995 | 3_1:+80298698 | None:intergenic |
| TTGAGGGACACTCCGTCATA+AGG | 0.461371 | 3_1:-80298734 | Msa0379280:three_prime_UTR |
| TTGACTTCTTCCACCCCATC+GGG | 0.463916 | 3_1:+80303336 | None:intergenic |
| TTGGGAATCAGAATTTGGCT+TGG | 0.467858 | 3_1:+80299081 | None:intergenic |
| AGGATACCAATATCTGCAAT+TGG | 0.469636 | 3_1:+80301557 | None:intergenic |
| CGGATCTTTGGAGTGTTGGT+AGG | 0.480030 | 3_1:-80299246 | Msa0379280:CDS |
| ATCGACTGTTTGGATGTGAT+TGG | 0.480740 | 3_1:+80299189 | None:intergenic |
| TTCAACATTGTCCTCTCCGT+TGG | 0.481717 | 3_1:+80303104 | None:intergenic |
| AAAACAGGAAGCAATCCTTT+CGG | 0.487968 | 3_1:-80299266 | Msa0379280:intron |
| TCTTGGAGCTGATATGCGTC+AGG | 0.492178 | 3_1:-80302293 | Msa0379280:CDS |
| CGCAAATTCCAAATCTTAGT+CGG | 0.493963 | 3_1:+80302465 | None:intergenic |
| ATAATTTGGGTCTCTAATGA+TGG | 0.497402 | 3_1:+80302566 | None:intergenic |
| TGTTAATATCATTGAAGCTA+CGG | 0.498736 | 3_1:+80302427 | None:intergenic |
| ATCGAATCGAATCCAATCTC+AGG | 0.500102 | 3_1:-80303745 | Msa0379280:intron |
| CTTTCGGATCTTTGGAGTGT+TGG | 0.501184 | 3_1:-80299250 | Msa0379280:CDS |
| CTATTAGGACCAGTCCCGAT+GGG | 0.502344 | 3_1:-80303350 | Msa0379280:intron |
| TACTTCCCATGAGTTTGGCA+GGG | 0.509947 | 3_1:-80299032 | Msa0379280:CDS |
| ACGAGGATTATAGTCATAGT+TGG | 0.512382 | 3_1:+80302870 | None:intergenic |
| AGAAACCATAAAATCTTTGA+AGG | 0.514471 | 3_1:+80298906 | None:intergenic |
| ATATTAGGCAGTTCTTGAGT+TGG | 0.517840 | 3_1:-80298812 | Msa0379280:three_prime_UTR |
| GACTCGTGCATGCACTTCCT+AGG | 0.519338 | 3_1:-80303059 | Msa0379280:CDS |
| CGGATTACTCACAACATTGT+CGG | 0.525746 | 3_1:+80302485 | None:intergenic |
| GAAAGAGCAACACTGGACTT+AGG | 0.532333 | 3_1:+80303252 | None:intergenic |
| TTATCCTTGGAGTTTACACC+AGG | 0.532949 | 3_1:+80299106 | None:intergenic |
| ACTTCCCATGAGTTTGGCAG+GGG | 0.533366 | 3_1:-80299031 | Msa0379280:CDS |
| TTCGACGCTGTTAAAACGAA+AGG | 0.539678 | 3_1:-80303537 | Msa0379280:five_prime_UTR |
| GAAACATTGGATGGCACGGA+TGG | 0.541803 | 3_1:-80302795 | Msa0379280:CDS |
| CTAACTGGTCTCGATGATAC+CGG | 0.544580 | 3_1:+80299212 | None:intergenic |
| ATTGACTTCTTCCACCCCAT+CGG | 0.544947 | 3_1:+80303335 | None:intergenic |
| CCTTATAAATAAAAGAGCAC+TGG | 0.552369 | 3_1:-80303843 | Msa0379280:five_prime_UTR |
| TCTATTAGGACCAGTCCCGA+TGG | 0.554676 | 3_1:-80303351 | Msa0379280:intron |
| ACGATAAGAAAGAGCAACAC+TGG | 0.557935 | 3_1:+80303245 | None:intergenic |
| TGCGGCACTCGTCATTCTTG+AGG | 0.567763 | 3_1:-80303012 | Msa0379280:intron |
| CGCACATATACGACAGGGCA+TGG | 0.567981 | 3_1:+80303031 | None:intergenic |
| AAAGGTTAGAGAATTTCGCT+AGG | 0.568244 | 3_1:-80303813 | Msa0379280:five_prime_UTR |
| AGAAGAAACATTGGATGGCA+CGG | 0.569193 | 3_1:-80302799 | Msa0379280:CDS |
| TTGGAAGAAGAAACATTGGA+TGG | 0.570498 | 3_1:-80302804 | Msa0379280:CDS |
| CATCCATATGCCATAAGCTA+TGG | 0.570622 | 3_1:-80298880 | Msa0379280:three_prime_UTR |
| GAGTGCCGCACATATACGAC+AGG | 0.573241 | 3_1:+80303025 | None:intergenic |
| TAGGACCAGTCCCGATGGGG+TGG | 0.573573 | 3_1:-80303346 | Msa0379280:exon |
| GGCATGTTCTTGGAATTGCT+AGG | 0.575593 | 3_1:-80303284 | Msa0379280:CDS |
| AAGGTTAGAGAATTTCGCTA+GGG | 0.590233 | 3_1:-80303812 | Msa0379280:five_prime_UTR |
| TGAGGAGTACAACAGTGTTA+CGG | 0.593759 | 3_1:-80301512 | Msa0379280:intron |
| AAGAGCACTGGTAAAACGAA+AGG | 0.593867 | 3_1:-80303831 | Msa0379280:five_prime_UTR |
| TCTTCAAGTGGAGCAGCAGA+CGG | 0.594559 | 3_1:-80302257 | Msa0379280:CDS |
| CTTCCCATGAGTTTGGCAGG+GGG | 0.594615 | 3_1:-80299030 | Msa0379280:CDS |
| TTGGTAGGTATCATCGAGAC+CGG | 0.596668 | 3_1:-80299231 | Msa0379280:CDS |
| ACTATGACTATAATCCTCGT+TGG | 0.598254 | 3_1:-80302867 | Msa0379280:CDS |
| AAAGCAAGAAGAGAAATCCT+TGG | 0.600748 | 3_1:-80298984 | Msa0379280:CDS |
| GTAGATACAAACCTTAATTG+GGG | 0.600824 | 3_1:+80302743 | None:intergenic |
| GCTGAAAGCTTCAAATGATG+AGG | 0.602476 | 3_1:-80301530 | Msa0379280:CDS |
| TGTTAAAACGAAAGGTTGAG+TGG | 0.607094 | 3_1:-80303529 | Msa0379280:five_prime_UTR |
| ATCCTTGGAGTTTACACCAG+GGG | 0.609856 | 3_1:+80299108 | None:intergenic |
| TTCCCATGAGTTTGGCAGGG+GGG | 0.610554 | 3_1:-80299029 | Msa0379280:CDS |
| ATACATAATCAACACACAGA+AGG | 0.615135 | 3_1:+80298833 | None:intergenic |
| GACAGGGCATGGAGTAACCT+AGG | 0.618684 | 3_1:+80303042 | None:intergenic |
| CATAGCTTATGGCATATGGA+TGG | 0.622613 | 3_1:+80298881 | None:intergenic |
| TCCTTGGAGTTTACACCAGG+GGG | 0.622769 | 3_1:+80299109 | None:intergenic |
| ACCTGGAAAACAAACTGGCA+AGG | 0.625858 | 3_1:-80302215 | Msa0379280:intron |
| GCAACACTGGACTTAGGTCG+AGG | 0.628117 | 3_1:+80303258 | None:intergenic |
| GGATTATAGTCATAGTTGGA+CGG | 0.632833 | 3_1:+80302874 | None:intergenic |
| TGTGATCAACCCAGATATGG+AGG | 0.636045 | 3_1:-80303145 | Msa0379280:intron |
| TCACAAATTTGCTGATCGTG+AGG | 0.638391 | 3_1:-80302535 | Msa0379280:CDS |
| ATTTACGTACTTCTGTCCAA+CGG | 0.646066 | 3_1:-80303120 | Msa0379280:CDS |
| TTACCAAACAAACCTTATGA+CGG | 0.649611 | 3_1:+80298722 | None:intergenic |
| CGTACTTCTGTCCAACGGAG+AGG | 0.649648 | 3_1:-80303115 | Msa0379280:CDS |
| CATGCCCTGTCGTATATGTG+CGG | 0.654625 | 3_1:-80303030 | Msa0379280:CDS |
| TATTAGGACCAGTCCCGATG+GGG | 0.657404 | 3_1:-80303349 | Msa0379280:intron |
| CAACACTCCAAAGATCCGAA+AGG | 0.668695 | 3_1:+80299251 | None:intergenic |
| GACAGTATATCAAAACACCA+AGG | 0.702428 | 3_1:+80298967 | None:intergenic |
| TATCCTTGGAGTTTACACCA+GGG | 0.721611 | 3_1:+80299107 | None:intergenic |
| AGTGCCGCACATATACGACA+GGG | 0.776734 | 3_1:+80303026 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTAACTTTTACATATA+AGG | - | chr3_1:80299677-80299696 | Msa0379280:intron | 10.0% |
| !! | TAAATAAAAAGCTAATAAAT+TGG | + | chr3_1:80301032-80301051 | None:intergenic | 10.0% |
| !!! | AAAGTTTTTTTTTTTTTTGA+AGG | - | chr3_1:80301358-80301377 | Msa0379280:intron | 10.0% |
| !!! | TGTTTCTATTATTATAATTT+GGG | + | chr3_1:80301754-80301773 | None:intergenic | 10.0% |
| !!! | TGATTTTATACATAATAATT+GGG | + | chr3_1:80302998-80303017 | None:intergenic | 10.0% |
| !! | ATCTTTCGATATTATTTATA+GGG | - | chr3_1:80298829-80298848 | Msa0379280:three_prime_UTR | 15.0% |
| !! | TTATGCATTTAAAAACAAAT+AGG | + | chr3_1:80298967-80298986 | None:intergenic | 15.0% |
| !! | ATTGAGTAATTTATTTAGAA+TGG | + | chr3_1:80299417-80299436 | None:intergenic | 15.0% |
| !! | CAATGATATTAACATAATTA+AGG | - | chr3_1:80299977-80299996 | Msa0379280:intron | 15.0% |
| !!! | GTGTTTCTATTATTATAATT+TGG | + | chr3_1:80301755-80301774 | None:intergenic | 15.0% |
| !! | TAAATAAGAAGATAGAAATT+AGG | + | chr3_1:80302152-80302171 | None:intergenic | 15.0% |
| !!! | TTTCTATCTTCTTATTTATT+TGG | - | chr3_1:80302154-80302173 | Msa0379280:intron | 15.0% |
| !!! | TTCTATCTTCTTATTTATTT+GGG | - | chr3_1:80302155-80302174 | Msa0379280:intron | 15.0% |
| !!! | AAATTGATGAATGAATTTTT+CGG | - | chr3_1:80302435-80302454 | Msa0379280:CDS | 15.0% |
| !!! | CTGATTTTATACATAATAAT+TGG | + | chr3_1:80302999-80303018 | None:intergenic | 15.0% |
| !! | TTATGCATTGAAAACTAAAT+AGG | + | chr3_1:80298732-80298751 | None:intergenic | 20.0% |
| !! | GATCTTTCGATATTATTTAT+AGG | - | chr3_1:80298828-80298847 | Msa0379280:three_prime_UTR | 20.0% |
| !!! | TCTTTTTGAATCTTTCTATT+AGG | - | chr3_1:80299030-80299049 | Msa0379280:CDS | 20.0% |
| !!! | TATTTTATGTCTTTTTGCTT+TGG | - | chr3_1:80299089-80299108 | Msa0379280:CDS | 20.0% |
| !!! | ATTTTATGTCTTTTTGCTTT+GGG | - | chr3_1:80299090-80299109 | Msa0379280:CDS | 20.0% |
| !! | TGTGATTAGGAATATAATTT+GGG | + | chr3_1:80299845-80299864 | None:intergenic | 20.0% |
| !! | TTGTGATTAGGAATATAATT+TGG | + | chr3_1:80299846-80299865 | None:intergenic | 20.0% |
| !!! | TCACTAAACTTAGTTTTTAA+AGG | + | chr3_1:80300348-80300367 | None:intergenic | 20.0% |
| !!! | ATTAATGCACCATATTTTAT+GGG | - | chr3_1:80300983-80301002 | Msa0379280:intron | 20.0% |
| !!! | TAATAAATTGGCTCATTAAT+AGG | + | chr3_1:80301020-80301039 | None:intergenic | 20.0% |
| !! | ATTATGATGAATCTTACAAA+AGG | + | chr3_1:80301187-80301206 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTTTACTTTGAAT+TGG | - | chr3_1:80301214-80301233 | Msa0379280:intron | 20.0% |
| !!! | TTTTATGAAAGTGTACTTAA+TGG | + | chr3_1:80301300-80301319 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTTTTTTTGTGAA+GGG | + | chr3_1:80301496-80301515 | None:intergenic | 20.0% |
| !! | AGTAGAATAAAATGTATTAG+AGG | - | chr3_1:80301602-80301621 | Msa0379280:intron | 20.0% |
| !! | AAAGACTCATTAATAAGATT+TGG | - | chr3_1:80301663-80301682 | Msa0379280:intron | 20.0% |
| !!! | ATTAATGCACCATATTTTAT+GGG | + | chr3_1:80300983-80301002 | None:intergenic | 20.0% |
| !!! | ATTGTTTTACATGATTCTTA+TGG | - | chr3_1:80301860-80301879 | Msa0379280:intron | 20.0% |
| !! | ATACCCTTAGATTTAATTAA+TGG | - | chr3_1:80302232-80302251 | Msa0379280:CDS | 20.0% |
| !! | CAACCATTAATTAAATCTAA+GGG | + | chr3_1:80302238-80302257 | None:intergenic | 20.0% |
| !! | TCAACCATTAATTAAATCTA+AGG | + | chr3_1:80302239-80302258 | None:intergenic | 20.0% |
| !!! | TTAAGTTGCTTTTTGTTTTT+GGG | - | chr3_1:80302487-80302506 | Msa0379280:CDS | 20.0% |
| !! | AATATGGAATTACATATTCA+TGG | + | chr3_1:80302592-80302611 | None:intergenic | 20.0% |
| !! | TTGGTTAAAATAATCTATCA+TGG | - | chr3_1:80302660-80302679 | Msa0379280:intron | 20.0% |
| !! | ATAACGTTGGATTTAATTAA+AGG | + | chr3_1:80302854-80302873 | None:intergenic | 20.0% |
| !! | TATGTATAAAATCAGTGTTA+TGG | - | chr3_1:80303004-80303023 | Msa0379280:intron | 20.0% |
| !!! | AGCAAAATTTTCATCATTTT+TGG | + | chr3_1:80303251-80303270 | None:intergenic | 20.0% |
| !!! | AAAAATGATGAAAATTTTGC+TGG | - | chr3_1:80303250-80303269 | Msa0379280:CDS | 20.0% |
| !!! | TGATTAAAACGGTTTATTTT+TGG | - | chr3_1:80303638-80303657 | Msa0379280:intron | 20.0% |
| !! | CGATATTATTTATAGGGTTT+TGG | - | chr3_1:80298835-80298854 | Msa0379280:three_prime_UTR | 25.0% |
| ! | AAACAATATGTAATCATGTG+CGG | + | chr3_1:80298927-80298946 | None:intergenic | 25.0% |
| ! | TCAAAAAGAAAATTCAATCC+AGG | + | chr3_1:80299019-80299038 | None:intergenic | 25.0% |
| !!! | GTTTTTCAGACAAATTAGAA+TGG | + | chr3_1:80299188-80299207 | None:intergenic | 25.0% |
| ! | TCTTCTTCCAAAAATATCAA+CGG | + | chr3_1:80299582-80299601 | None:intergenic | 25.0% |
| !!! | ATTTTTGGAAGAAGAAACAT+TGG | - | chr3_1:80299587-80299606 | Msa0379280:intron | 25.0% |
| ! | AGTAGATACAAACCTTAATT+GGG | + | chr3_1:80299656-80299675 | None:intergenic | 25.0% |
| ! | AAGTAGATACAAACCTTAAT+TGG | + | chr3_1:80299657-80299676 | None:intergenic | 25.0% |
| !! | ATTTTGCCATTGAATATTGA+TGG | - | chr3_1:80299722-80299741 | Msa0379280:intron | 25.0% |
| ! | TATGAATACAACGTGAAAAA+AGG | + | chr3_1:80299767-80299786 | None:intergenic | 25.0% |
| ! | TGTTAATATCATTGAAGCTA+CGG | + | chr3_1:80299971-80299990 | None:intergenic | 25.0% |
| ! | TCTACATGAACAAAATTGAA+TGG | + | chr3_1:80300081-80300100 | None:intergenic | 25.0% |
| !! | TTTTGCTAAATATCTTCAAG+TGG | - | chr3_1:80300126-80300145 | Msa0379280:intron | 25.0% |
| !!! | TTTTTGAAATTCATCAAACC+TGG | - | chr3_1:80300163-80300182 | Msa0379280:intron | 25.0% |
| ! | GAAGAACTGTTAATAAGATA+TGG | + | chr3_1:80300819-80300838 | None:intergenic | 25.0% |
| !! | GATTAATGCACCATATTTTA+TGG | - | chr3_1:80300982-80301001 | Msa0379280:intron | 25.0% |
| !!! | ATTTTTTCTCTCTTTCTGAA+AGG | - | chr3_1:80301103-80301122 | Msa0379280:intron | 25.0% |
| ! | TAATAACCAAATTGGAATCA+AGG | - | chr3_1:80301154-80301173 | Msa0379280:intron | 25.0% |
| ! | AAAAAACTTTGCAGTTGTAT+TGG | + | chr3_1:80301348-80301367 | None:intergenic | 25.0% |
| ! | CCCTTCACAAAAAAAAAAAA+AGG | - | chr3_1:80301493-80301512 | Msa0379280:intron | 25.0% |
| !!! | GCCTTTTTTTTTTTTTGTGA+AGG | + | chr3_1:80301497-80301516 | None:intergenic | 25.0% |
| !! | GATTAATGCACCATATTTTA+TGG | + | chr3_1:80300982-80301001 | None:intergenic | 25.0% |
| ! | AAATTAGTGATAGATATCAG+TGG | + | chr3_1:80301792-80301811 | None:intergenic | 25.0% |
| ! | TGATTGTTATGTAATTACGT+AGG | + | chr3_1:80302072-80302091 | None:intergenic | 25.0% |
| ! | TTGTCTATTTACATCTGTAA+AGG | + | chr3_1:80302121-80302140 | None:intergenic | 25.0% |
| !! | TATCTTCTTATTTATTTGGG+TGG | - | chr3_1:80302158-80302177 | Msa0379280:intron | 25.0% |
| !! | TAAGTAGTCATTGATAACAT+GGG | + | chr3_1:80302327-80302346 | None:intergenic | 25.0% |
| !!! | GTTAAGTTGCTTTTTGTTTT+TGG | - | chr3_1:80302486-80302505 | Msa0379280:CDS | 25.0% |
| !!! | TAAGTTGCTTTTTGTTTTTG+GGG | - | chr3_1:80302488-80302507 | Msa0379280:CDS | 25.0% |
| !! | TAAAAGGCACAACTAAAATA+TGG | + | chr3_1:80302608-80302627 | None:intergenic | 25.0% |
| ! | AGGCTTCAAGATTTAATAAA+AGG | + | chr3_1:80302624-80302643 | None:intergenic | 25.0% |
| ! | GGACATTAATAAAATAACGT+TGG | + | chr3_1:80302867-80302886 | None:intergenic | 25.0% |
| !!! | TTATTTTATTAATGTCCCAC+CGG | - | chr3_1:80302870-80302889 | Msa0379280:CDS | 25.0% |
| !!! | CAAATAAATGATGGATTCTA+CGG | + | chr3_1:80302919-80302938 | None:intergenic | 25.0% |
| ! | TCAAGATGACAAATAAATGA+TGG | + | chr3_1:80302928-80302947 | None:intergenic | 25.0% |
| ! | TATTTGTCATCTTGATTTCT+TGG | - | chr3_1:80302933-80302952 | Msa0379280:intron | 25.0% |
| ! | ATTAGGCTGCATTATTTATT+AGG | + | chr3_1:80303089-80303108 | None:intergenic | 25.0% |
| ! | TAAATAATGCAGCCTAATTA+AGG | - | chr3_1:80303091-80303110 | Msa0379280:CDS | 25.0% |
| ! | TGATTAACGTGTAATAAAAC+AGG | - | chr3_1:80303114-80303133 | Msa0379280:CDS | 25.0% |
| !!! | AAGAACACAATTTTAAAAGC+AGG | + | chr3_1:80303455-80303474 | None:intergenic | 25.0% |
| !!! | CTTTTAAAATTGTGTTCTTC+TGG | - | chr3_1:80303456-80303475 | Msa0379280:intron | 25.0% |
| ! | AGAAACCATAAAATCTTTGA+AGG | + | chr3_1:80303492-80303511 | None:intergenic | 25.0% |
| !! | TTCAAAGATTTTATGGTTTC+TGG | - | chr3_1:80303491-80303510 | Msa0379280:intron | 25.0% |
| !!! | GTGTGTTGATTATGTATATT+AGG | - | chr3_1:80303568-80303587 | Msa0379280:intron | 25.0% |
| !!! | AAACCGTTTTAATCAAAGTT+AGG | + | chr3_1:80303633-80303652 | None:intergenic | 25.0% |
| !! | CCAGTGCTCTTTTATTTATA+AGG | + | chr3_1:80298555-80298574 | None:intergenic | 30.0% |
| ! | CCTTATAAATAAAAGAGCAC+TGG | - | chr3_1:80298552-80298571 | Msa0379280:three_prime_UTR | 30.0% |
| TTGACATTCGAATCAATACT+TGG | - | chr3_1:80298763-80298782 | Msa0379280:three_prime_UTR | 30.0% | |
| ! | ATCGAAAGATCGATTCAAAT+AGG | + | chr3_1:80298819-80298838 | None:intergenic | 30.0% |
| TTGACATTTGAATCAATACC+TGG | - | chr3_1:80298998-80299017 | Msa0379280:CDS | 30.0% | |
| TCACAGTTATAAACTCAGAA+TGG | + | chr3_1:80299454-80299473 | None:intergenic | 30.0% | |
| AGATATCTTGATACGTATCT+GGG | + | chr3_1:80299481-80299500 | None:intergenic | 30.0% | |
| TAGATATCTTGATACGTATC+TGG | + | chr3_1:80299482-80299501 | None:intergenic | 30.0% | |
| ! | ATCTTTGCCGTTGATATTTT+TGG | - | chr3_1:80299572-80299591 | Msa0379280:intron | 30.0% |
| ATTGGGGCAAAAAAATCATA+TGG | + | chr3_1:80299639-80299658 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTTGCCCCAATTA+AGG | - | chr3_1:80299641-80299660 | Msa0379280:intron | 30.0% |
| GTAGATACAAACCTTAATTG+GGG | + | chr3_1:80299655-80299674 | None:intergenic | 30.0% | |
| TCAAAGCCATCAATATTCAA+TGG | + | chr3_1:80299731-80299750 | None:intergenic | 30.0% | |
| ATAATTTGGGTCTCTAATGA+TGG | + | chr3_1:80299832-80299851 | None:intergenic | 30.0% | |
| ATAATTAAGGTGAGCAATGT+CGG | - | chr3_1:80299990-80300009 | Msa0379280:intron | 30.0% | |
| AAAACATAAACTGCATGAAC+AGG | + | chr3_1:80300033-80300052 | None:intergenic | 30.0% | |
| ! | GTTCATGCAGTTTATGTTTT+TGG | - | chr3_1:80300033-80300052 | Msa0379280:intron | 30.0% |
| ! | ATTTTGTTCATGTAGAGTCT+TGG | - | chr3_1:80300085-80300104 | Msa0379280:intron | 30.0% |
| AGAGTTAGTCAAATGATTGA+GGG | - | chr3_1:80300239-80300258 | Msa0379280:intron | 30.0% | |
| !! | CTTTAAAACCTATGGTGTAT+GGG | - | chr3_1:80300300-80300319 | Msa0379280:intron | 30.0% |
| ! | TTTAAAACCTATGGTGTATG+GGG | - | chr3_1:80300301-80300320 | Msa0379280:intron | 30.0% |
| TAATCCTATCTTATGTTGTG+TGG | + | chr3_1:80300383-80300402 | None:intergenic | 30.0% | |
| ACACAACATAAGATAGGATT+AGG | - | chr3_1:80300382-80300401 | Msa0379280:intron | 30.0% | |
| ACATAAGATAGGATTAGGAA+TGG | - | chr3_1:80300387-80300406 | Msa0379280:intron | 30.0% | |
| GGATTCATTAGACAAAAAGA+CGG | - | chr3_1:80300408-80300427 | Msa0379280:intron | 30.0% | |
| GATTCATTAGACAAAAAGAC+GGG | - | chr3_1:80300409-80300428 | Msa0379280:intron | 30.0% | |
| GAATCTCTCTTTATGTGATT+TGG | - | chr3_1:80300458-80300477 | Msa0379280:intron | 30.0% | |
| !!! | AGAGAAGTGTTTTCAAATAG+CGG | - | chr3_1:80300534-80300553 | Msa0379280:intron | 30.0% |
| !!! | GACATTTTTTGTTTGATCCA+TGG | - | chr3_1:80300724-80300743 | Msa0379280:intron | 30.0% |
| !! | CAATAAAGCATTTTCCTACT+AGG | + | chr3_1:80300766-80300785 | None:intergenic | 30.0% |
| ! | CCAATTTGATTTAATGCCTT+GGG | + | chr3_1:80300923-80300942 | None:intergenic | 30.0% |
| ! | TCCAATTTGATTTAATGCCT+TGG | + | chr3_1:80300924-80300943 | None:intergenic | 30.0% |
| TTGGAGAAACCCATAAAATA+TGG | + | chr3_1:80301682-80301701 | None:intergenic | 30.0% | |
| ! | ATTGGCTCATTAATAGGATT+TGG | + | chr3_1:80301014-80301033 | None:intergenic | 30.0% |
| !! | AGAGAACGGTTTTTAAGAAA+AGG | + | chr3_1:80301080-80301099 | None:intergenic | 30.0% |
| AGAGAAAAAATGAGAGAGAA+CGG | + | chr3_1:80301094-80301113 | None:intergenic | 30.0% | |
| ATAATGCCTTGATTCCAATT+TGG | + | chr3_1:80301163-80301182 | None:intergenic | 30.0% | |
| AATGACAGTGTTCAAATTGA+CGG | - | chr3_1:80301256-80301275 | Msa0379280:intron | 30.0% | |
| TTGGAGAAACCCATAAAATA+TGG | - | chr3_1:80301682-80301701 | Msa0379280:intron | 30.0% | |
| TTACATGATTCTTATGGTGT+TGG | - | chr3_1:80301866-80301885 | Msa0379280:intron | 30.0% | |
| !! | TTAGAACTTGTGAAGTATTG+AGG | - | chr3_1:80301902-80301921 | Msa0379280:intron | 30.0% |
| AATAAAAAGACATACGATGC+TGG | - | chr3_1:80302012-80302031 | Msa0379280:intron | 30.0% | |
| ! | TATTTATTTGGGTGGATTCT+AGG | - | chr3_1:80302166-80302185 | Msa0379280:intron | 30.0% |
| ! | ATTTATTTGGGTGGATTCTA+GGG | - | chr3_1:80302167-80302186 | Msa0379280:intron | 30.0% |
| !!! | ATCTAAGGGTATTTTGTTCA+TGG | + | chr3_1:80302224-80302243 | None:intergenic | 30.0% |
| ! | GTAAGTAGTCATTGATAACA+TGG | + | chr3_1:80302328-80302347 | None:intergenic | 30.0% |
| !! | GAATCATTGGTATTGGTATT+TGG | - | chr3_1:80302404-80302423 | Msa0379280:intron | 30.0% |
| ! | TCTATTTTGTTCTTGTTCAG+CGG | - | chr3_1:80302464-80302483 | Msa0379280:CDS | 30.0% |
| ! | TTTTATTATCTCCTTCACCA+TGG | - | chr3_1:80302516-80302535 | Msa0379280:CDS | 30.0% |
| TTAAATCTTGAAGCCTATGT+TGG | - | chr3_1:80302628-80302647 | Msa0379280:intron | 30.0% | |
| !! | TTGTCACAATTATTTTGCAC+CGG | - | chr3_1:80302711-80302730 | Msa0379280:intron | 30.0% |
| CAACAAAAATCCAAACAAGA+TGG | + | chr3_1:80302740-80302759 | None:intergenic | 30.0% | |
| ! | TGTTTGGATTTTTGTTGAGT+TGG | - | chr3_1:80302743-80302762 | Msa0379280:intron | 30.0% |
| !!! | ACTCTTTTTTTACCACACAA+GGG | + | chr3_1:80302971-80302990 | None:intergenic | 30.0% |
| !!! | AACTCTTTTTTTACCACACA+AGG | + | chr3_1:80302972-80302991 | None:intergenic | 30.0% |
| ACACGTTAATCACCTTAATT+AGG | + | chr3_1:80303106-80303125 | None:intergenic | 30.0% | |
| ! | CTTTGCCTTCAAAGATTTTA+TGG | - | chr3_1:80303484-80303503 | Msa0379280:intron | 30.0% |
| ATACATAATCAACACACAGA+AGG | + | chr3_1:80303565-80303584 | None:intergenic | 30.0% | |
| CAGCCTAACTTTGATTAAAA+CGG | - | chr3_1:80303627-80303646 | Msa0379280:intron | 30.0% | |
| !!! | AAACGGTTTATTTTTGGTTG+AGG | - | chr3_1:80303644-80303663 | Msa0379280:intron | 30.0% |
| !!! | AACGGTTTATTTTTGGTTGA+GGG | - | chr3_1:80303645-80303664 | Msa0379280:intron | 30.0% |
| TTACCAAACAAACCTTATGA+CGG | + | chr3_1:80303676-80303695 | None:intergenic | 30.0% | |
| ! | TAAAGTGGTAAGGGTATAAA+TGG | + | chr3_1:80303844-80303863 | None:intergenic | 30.0% |
| !!! | GGTTTTAGTTAAAGTGGTAA+GGG | + | chr3_1:80303853-80303872 | None:intergenic | 30.0% |
| AAAGGTTAGAGAATTTCGCT+AGG | - | chr3_1:80298582-80298601 | Msa0379280:three_prime_UTR | 35.0% | |
| AAGGTTAGAGAATTTCGCTA+GGG | - | chr3_1:80298583-80298602 | Msa0379280:three_prime_UTR | 35.0% | |
| TGCAACAATTTGTAATCGTG+TGG | + | chr3_1:80298689-80298708 | None:intergenic | 35.0% | |
| TGTTAAAACGAAAGGTTGAG+TGG | - | chr3_1:80298866-80298885 | Msa0379280:three_prime_UTR | 35.0% | |
| !! | GCTCTTTCTTATCGTTTTTG+AGG | - | chr3_1:80299158-80299177 | Msa0379280:CDS | 35.0% |
| CGTAAATATCCTCCATATCT+GGG | + | chr3_1:80299262-80299281 | None:intergenic | 35.0% | |
| ACGTAAATATCCTCCATATC+TGG | + | chr3_1:80299263-80299282 | None:intergenic | 35.0% | |
| ATTTACGTACTTCTGTCCAA+CGG | - | chr3_1:80299275-80299294 | Msa0379280:intron | 35.0% | |
| GGATTATAGTCATAGTTGGA+CGG | + | chr3_1:80299524-80299543 | None:intergenic | 35.0% | |
| ACGAGGATTATAGTCATAGT+TGG | + | chr3_1:80299528-80299547 | None:intergenic | 35.0% | |
| ACTATGACTATAATCCTCGT+TGG | - | chr3_1:80299528-80299547 | Msa0379280:intron | 35.0% | |
| TTGGAAGAAGAAACATTGGA+TGG | - | chr3_1:80299591-80299610 | Msa0379280:intron | 35.0% | |
| ! | TTCTCCAGAAACATTTTCGT+TGG | - | chr3_1:80299796-80299815 | Msa0379280:intron | 35.0% |
| ! | TCTCCAGAAACATTTTCGTT+GGG | - | chr3_1:80299797-80299816 | Msa0379280:intron | 35.0% |
| CGATCAGCAAATTTGTGATT+AGG | + | chr3_1:80299858-80299877 | None:intergenic | 35.0% | |
| !! | TTGTCGGCAAACTTGTTATT+AGG | + | chr3_1:80299897-80299916 | None:intergenic | 35.0% |
| TGAGTAATCCGACTAAGATT+TGG | - | chr3_1:80299922-80299941 | Msa0379280:intron | 35.0% | |
| CGCAAATTCCAAATCTTAGT+CGG | + | chr3_1:80299933-80299952 | None:intergenic | 35.0% | |
| ATCAAACCTGGAAAACAAAC+TGG | - | chr3_1:80300175-80300194 | Msa0379280:intron | 35.0% | |
| CAGAGTTAGTCAAATGATTG+AGG | - | chr3_1:80300238-80300257 | Msa0379280:intron | 35.0% | |
| TGTGGTAAAGTTTCCCTTTA+TGG | + | chr3_1:80300271-80300290 | None:intergenic | 35.0% | |
| GAAACTTTACCACAATCCTA+TGG | - | chr3_1:80300277-80300296 | Msa0379280:intron | 35.0% | |
| !!! | GTTTTAAAGCCATAGGATTG+TGG | + | chr3_1:80300289-80300308 | None:intergenic | 35.0% |
| !! | TCCTATGGCTTTAAAACCTA+TGG | - | chr3_1:80300292-80300311 | Msa0379280:intron | 35.0% |
| !!! | ACCATAGGTTTTAAAGCCAT+AGG | + | chr3_1:80300296-80300315 | None:intergenic | 35.0% |
| !! | GCTTTAAAACCTATGGTGTA+TGG | - | chr3_1:80300299-80300318 | Msa0379280:intron | 35.0% |
| ! | TTTTCAAATAGCGGTTACAG+CGG | - | chr3_1:80300543-80300562 | Msa0379280:intron | 35.0% |
| GTTCTTCCAATTGCAGATAT+TGG | - | chr3_1:80300832-80300851 | Msa0379280:intron | 35.0% | |
| AGGATACCAATATCTGCAAT+TGG | + | chr3_1:80300841-80300860 | None:intergenic | 35.0% | |
| ! | ATTTGAAGCTTTCAGCATAC+AGG | + | chr3_1:80300861-80300880 | None:intergenic | 35.0% |
| ! | CCCAAGGCATTAAATCAAAT+TGG | - | chr3_1:80300920-80300939 | Msa0379280:intron | 35.0% |
| CCAATTTGGTTATTACTTGC+AGG | + | chr3_1:80301149-80301168 | None:intergenic | 35.0% | |
| CCTGCAAGTAATAACCAAAT+TGG | - | chr3_1:80301146-80301165 | Msa0379280:intron | 35.0% | |
| TACTTAATGGAGCCAATGTT+TGG | + | chr3_1:80301287-80301306 | None:intergenic | 35.0% | |
| !! | ATTTCGTAATTTGCTGTGCT+TGG | - | chr3_1:80301808-80301827 | Msa0379280:intron | 35.0% |
| AAGGCAAAGATACCAATTTG+TGG | + | chr3_1:80302102-80302121 | None:intergenic | 35.0% | |
| ATCGGTAACTTATCCATTGA+CGG | - | chr3_1:80302379-80302398 | Msa0379280:intron | 35.0% | |
| !!! | TTGCTTTTTGTTTTTGGGGA+AGG | - | chr3_1:80302492-80302511 | Msa0379280:CDS | 35.0% |
| TTGTACATCTCTCTTTGGTT+GGG | + | chr3_1:80302562-80302581 | None:intergenic | 35.0% | |
| ATCTGTTGTACATCTCTCTT+TGG | + | chr3_1:80302567-80302586 | None:intergenic | 35.0% | |
| AAAACAGGAAGCAATCCTTT+CGG | - | chr3_1:80303129-80303148 | Msa0379280:CDS | 35.0% | |
| AGTTTCAGATACAGCTCTTT+GGG | + | chr3_1:80303335-80303354 | None:intergenic | 35.0% | |
| AAGTTTCAGATACAGCTCTT+TGG | + | chr3_1:80303336-80303355 | None:intergenic | 35.0% | |
| AAAGCAAGAAGAGAAATCCT+TGG | - | chr3_1:80303411-80303430 | Msa0379280:intron | 35.0% | |
| GACAGTATATCAAAACACCA+AGG | + | chr3_1:80303431-80303450 | None:intergenic | 35.0% | |
| AACTTAGCATCCATAGCTTA+TGG | + | chr3_1:80303528-80303547 | None:intergenic | 35.0% | |
| ATATTAGGCAGTTCTTGAGT+TGG | - | chr3_1:80303583-80303602 | Msa0379280:intron | 35.0% | |
| AAGCTAGAAGCTCATTTATG+TGG | + | chr3_1:80303700-80303719 | None:intergenic | 35.0% | |
| TTATAAGCTCAAACGCTACT+TGG | + | chr3_1:80303798-80303817 | None:intergenic | 35.0% | |
| !!! | GGGTTTTAGTTAAAGTGGTA+AGG | + | chr3_1:80303854-80303873 | None:intergenic | 35.0% |
| !! | AAGAGCACTGGTAAAACGAA+AGG | - | chr3_1:80298564-80298583 | Msa0379280:three_prime_UTR | 40.0% |
| CGCTGTTCTGTTAAAACGAA+AGG | - | chr3_1:80298618-80298637 | Msa0379280:three_prime_UTR | 40.0% | |
| ATCGAATCGAATCCAATCTC+AGG | - | chr3_1:80298650-80298669 | Msa0379280:three_prime_UTR | 40.0% | |
| GAAAAGCTTGTACCTGAGAT+TGG | + | chr3_1:80298665-80298684 | None:intergenic | 40.0% | |
| TTCGACGCTGTTAAAACGAA+AGG | - | chr3_1:80298858-80298877 | Msa0379280:three_prime_UTR | 40.0% | |
| !! | TTTTGCTTTGGGCATGTTCT+TGG | - | chr3_1:80299101-80299120 | Msa0379280:CDS | 40.0% |
| ACGATAAGAAAGAGCAACAC+TGG | + | chr3_1:80299153-80299172 | None:intergenic | 40.0% | |
| AACTGTGATCAACCCAGATA+TGG | - | chr3_1:80299247-80299266 | Msa0379280:CDS | 40.0% | |
| AGAAGAAACATTGGATGGCA+CGG | - | chr3_1:80299596-80299615 | Msa0379280:intron | 40.0% | |
| ! | CTCCAGAAACATTTTCGTTG+GGG | - | chr3_1:80299798-80299817 | Msa0379280:intron | 40.0% |
| ! | TCCAGAAACATTTTCGTTGG+GGG | - | chr3_1:80299799-80299818 | Msa0379280:intron | 40.0% |
| !! | TCACAAATTTGCTGATCGTG+AGG | - | chr3_1:80299860-80299879 | Msa0379280:intron | 40.0% |
| CGGATTACTCACAACATTGT+CGG | + | chr3_1:80299913-80299932 | None:intergenic | 40.0% | |
| CTAACTCTGCTTGCATTTCA+TGG | + | chr3_1:80300227-80300246 | None:intergenic | 40.0% | |
| ! | ATTGAGGGCTTTGACCATAA+AGG | - | chr3_1:80300254-80300273 | Msa0379280:intron | 40.0% |
| ! | TTGAGGGCTTTGACCATAAA+GGG | - | chr3_1:80300255-80300274 | Msa0379280:intron | 40.0% |
| GTAGCCACACAACATAAGAT+AGG | - | chr3_1:80300376-80300395 | Msa0379280:intron | 40.0% | |
| ! | GACGCCTTTTGTGAAAAAGA+TGG | - | chr3_1:80300433-80300452 | Msa0379280:intron | 40.0% |
| ! | GCCTTTTGTGAAAAAGATGG+CGG | - | chr3_1:80300436-80300455 | Msa0379280:intron | 40.0% |
| !! | TCCGCCATCTTTTTCACAAA+AGG | + | chr3_1:80300440-80300459 | None:intergenic | 40.0% |
| CGATAGTCTTCTCAATGGTT+TGG | + | chr3_1:80300500-80300519 | None:intergenic | 40.0% | |
| CCAATCGATAGTCTTCTCAA+TGG | + | chr3_1:80300505-80300524 | None:intergenic | 40.0% | |
| CCATTGAGAAGACTATCGAT+TGG | - | chr3_1:80300502-80300521 | Msa0379280:intron | 40.0% | |
| GCTGAAAGCTTCAAATGATG+AGG | - | chr3_1:80300865-80300884 | Msa0379280:intron | 40.0% | |
| ! | TGAGGAGTACAACAGTGTTA+CGG | - | chr3_1:80300883-80300902 | Msa0379280:intron | 40.0% |
| GGTAAACTAATACACTCCCA+AGG | - | chr3_1:80300904-80300923 | Msa0379280:intron | 40.0% | |
| TTGACGGTAGAACCAAACAT+TGG | - | chr3_1:80301272-80301291 | Msa0379280:intron | 40.0% | |
| AATCAGCATCAGCCACAAAT+TGG | - | chr3_1:80302087-80302106 | Msa0379280:intron | 40.0% | |
| ! | GTATTTTGTTCATGGTCCAC+CGG | + | chr3_1:80302216-80302235 | None:intergenic | 40.0% |
| GATAACATGGGAAGAGATAG+AGG | + | chr3_1:80302315-80302334 | None:intergenic | 40.0% | |
| AAGCCAGAGTTGAATTGAAG+TGG | - | chr3_1:80302349-80302368 | Msa0379280:intron | 40.0% | |
| AATTGAAGTGGCCACTGTAT+CGG | - | chr3_1:80302361-80302380 | Msa0379280:intron | 40.0% | |
| TGGATAAGTTACCGATACAG+TGG | + | chr3_1:80302375-80302394 | None:intergenic | 40.0% | |
| GTTGTACATCTCTCTTTGGT+TGG | + | chr3_1:80302563-80302582 | None:intergenic | 40.0% | |
| AATCCAAACAAGATGGTTGC+CGG | + | chr3_1:80302733-80302752 | None:intergenic | 40.0% | |
| !! | AATGATGGATTCTACGGTGA+GGG | + | chr3_1:80302913-80302932 | None:intergenic | 40.0% |
| !! | AAATGATGGATTCTACGGTG+AGG | + | chr3_1:80302914-80302933 | None:intergenic | 40.0% |
| AAGCAATCCTTTCGGATCTT+TGG | - | chr3_1:80303137-80303156 | Msa0379280:intron | 40.0% | |
| ! | TTTGGATGTGATTGGCTAAC+TGG | + | chr3_1:80303201-80303220 | None:intergenic | 40.0% |
| ATCGACTGTTTGGATGTGAT+TGG | + | chr3_1:80303209-80303228 | None:intergenic | 40.0% | |
| !!! | TTTTTGGAGTCAGATGCTAC+AGG | + | chr3_1:80303235-80303254 | None:intergenic | 40.0% |
| TATCCTTGGAGTTTACACCA+GGG | + | chr3_1:80303291-80303310 | None:intergenic | 40.0% | |
| TTATCCTTGGAGTTTACACC+AGG | + | chr3_1:80303292-80303311 | None:intergenic | 40.0% | |
| !! | ATTTGGCTTGGACTTATCCT+TGG | + | chr3_1:80303305-80303324 | None:intergenic | 40.0% |
| TTGGGAATCAGAATTTGGCT+TGG | + | chr3_1:80303317-80303336 | None:intergenic | 40.0% | |
| ! | GCTCTTTGGGAATCAGAATT+TGG | + | chr3_1:80303322-80303341 | None:intergenic | 40.0% |
| CATAGCTTATGGCATATGGA+TGG | + | chr3_1:80303517-80303536 | None:intergenic | 40.0% | |
| CATCCATATGCCATAAGCTA+TGG | - | chr3_1:80303515-80303534 | Msa0379280:five_prime_UTR | 40.0% | |
| CATCCATAGCTTATGGCATA+TGG | + | chr3_1:80303521-80303540 | None:intergenic | 40.0% | |
| ! | ACTCCGTCATAAGGTTTGTT+TGG | - | chr3_1:80303670-80303689 | Msa0379280:intron | 40.0% |
| ! | TTTCGCTAGGGTTTTGCGTT+TGG | - | chr3_1:80298595-80298614 | Msa0379280:three_prime_UTR | 45.0% |
| GGTTAGACTGTTCGAATCTC+AGG | - | chr3_1:80298887-80298906 | Msa0379280:three_prime_UTR | 45.0% | |
| ! | ATTGACTTCTTCCACCCCAT+CGG | + | chr3_1:80299063-80299082 | None:intergenic | 45.0% |
| GGCATGTTCTTGGAATTGCT+AGG | - | chr3_1:80299111-80299130 | Msa0379280:CDS | 45.0% | |
| GAAAGAGCAACACTGGACTT+AGG | + | chr3_1:80299146-80299165 | None:intergenic | 45.0% | |
| TGTGATCAACCCAGATATGG+AGG | - | chr3_1:80299250-80299269 | Msa0379280:CDS | 45.0% | |
| TTCAACATTGTCCTCTCCGT+TGG | + | chr3_1:80299294-80299313 | None:intergenic | 45.0% | |
| CTAAAAAGAACGCTCCAACG+AGG | + | chr3_1:80299545-80299564 | None:intergenic | 45.0% | |
| ! | CCAGAAACATTTTCGTTGGG+GGG | - | chr3_1:80299800-80299819 | Msa0379280:intron | 45.0% |
| ! | CAGAAACATTTTCGTTGGGG+GGG | - | chr3_1:80299801-80299820 | Msa0379280:intron | 45.0% |
| ACCTGGAAAACAAACTGGCA+AGG | - | chr3_1:80300180-80300199 | Msa0379280:intron | 45.0% | |
| !! | ACCTTGCCAGTTTGTTTTCC+AGG | + | chr3_1:80300184-80300203 | None:intergenic | 45.0% |
| AGCGTATCGCAAAACAACAG+CGG | + | chr3_1:80300587-80300606 | None:intergenic | 45.0% | |
| ! | TAGAGCAATGTTGTCGACTG+CGG | + | chr3_1:80300687-80300706 | None:intergenic | 45.0% |
| TAACCTGTGCAATCATGCAC+AGG | - | chr3_1:80300950-80300969 | Msa0379280:intron | 45.0% | |
| TATCCTGTGCATGATTGCAC+AGG | + | chr3_1:80300956-80300975 | None:intergenic | 45.0% | |
| GTGCAATCATGCACAGGATA+AGG | - | chr3_1:80300956-80300975 | Msa0379280:intron | 45.0% | |
| CTGTGCAATTGCACAGGATA+AGG | + | chr3_1:80301721-80301740 | None:intergenic | 45.0% | |
| CTTATCCTGTGCAATTGCAC+AGG | - | chr3_1:80301719-80301738 | Msa0379280:intron | 45.0% | |
| TCTAACCTGTGCAATTGCAC+AGG | + | chr3_1:80301727-80301746 | None:intergenic | 45.0% | |
| GTGCTTGGACTTCAGTTTGT+TGG | - | chr3_1:80301823-80301842 | Msa0379280:intron | 45.0% | |
| GGTTCAATTAAGTCCCTCAC+CGG | - | chr3_1:80302194-80302213 | Msa0379280:intron | 45.0% | |
| TGGCCACTTCAATTCAACTC+TGG | + | chr3_1:80302355-80302374 | None:intergenic | 45.0% | |
| TCCATTGACGGCAGAATCAT+TGG | - | chr3_1:80302391-80302410 | Msa0379280:intron | 45.0% | |
| ACCAATGATTCTGCCGTCAA+TGG | + | chr3_1:80302395-80302414 | None:intergenic | 45.0% | |
| GACGGCAGAATCATTGGTAT+TGG | - | chr3_1:80302397-80302416 | Msa0379280:intron | 45.0% | |
| CCAAAGACACACTCCAACAT+AGG | + | chr3_1:80302644-80302663 | None:intergenic | 45.0% | |
| CCTATGTTGGAGTGTGTCTT+TGG | - | chr3_1:80302641-80302660 | Msa0379280:intron | 45.0% | |
| TTATTAATGTCCCACCGGTG+AGG | - | chr3_1:80302875-80302894 | Msa0379280:CDS | 45.0% | |
| TATTAATGTCCCACCGGTGA+GGG | - | chr3_1:80302876-80302895 | Msa0379280:CDS | 45.0% | |
| GGTTCAATTAAGTCCCTCAC+CGG | + | chr3_1:80302194-80302213 | None:intergenic | 45.0% | |
| CAACACTCCAAAGATCCGAA+AGG | + | chr3_1:80303147-80303166 | None:intergenic | 45.0% | |
| !! | CTTTCGGATCTTTGGAGTGT+TGG | - | chr3_1:80303145-80303164 | Msa0379280:intron | 45.0% |
| TTGGTAGGTATCATCGAGAC+CGG | - | chr3_1:80303164-80303183 | Msa0379280:intron | 45.0% | |
| ! | CTAACTGGTCTCGATGATAC+CGG | + | chr3_1:80303186-80303205 | None:intergenic | 45.0% |
| ! | CTACAGGTTCATCGACTGTT+TGG | + | chr3_1:80303219-80303238 | None:intergenic | 45.0% |
| ATCCTTGGAGTTTACACCAG+GGG | + | chr3_1:80303290-80303309 | None:intergenic | 45.0% | |
| CCAAACTCATGGGAAGTAAC+AGG | + | chr3_1:80303361-80303380 | None:intergenic | 45.0% | |
| ! | CCTGTTACTTCCCATGAGTT+TGG | - | chr3_1:80303358-80303377 | Msa0379280:intron | 45.0% |
| TTACTTCCCATGAGTTTGGC+AGG | - | chr3_1:80303362-80303381 | Msa0379280:intron | 45.0% | |
| TACTTCCCATGAGTTTGGCA+GGG | - | chr3_1:80303363-80303382 | Msa0379280:intron | 45.0% | |
| TCTATTAGGACCAGTCCCGA+TGG | - | chr3_1:80299044-80299063 | Msa0379280:CDS | 50.0% | |
| CTATTAGGACCAGTCCCGAT+GGG | - | chr3_1:80299045-80299064 | Msa0379280:CDS | 50.0% | |
| TATTAGGACCAGTCCCGATG+GGG | - | chr3_1:80299046-80299065 | Msa0379280:CDS | 50.0% | |
| TTGACTTCTTCCACCCCATC+GGG | + | chr3_1:80299062-80299081 | None:intergenic | 50.0% | |
| CATGCCCTGTCGTATATGTG+CGG | - | chr3_1:80299365-80299384 | Msa0379280:intron | 50.0% | |
| AGTGCCGCACATATACGACA+GGG | + | chr3_1:80299372-80299391 | None:intergenic | 50.0% | |
| GAAACATTGGATGGCACGGA+TGG | - | chr3_1:80299600-80299619 | Msa0379280:intron | 50.0% | |
| CCCCCCAACGAAAATGTTTC+TGG | + | chr3_1:80299803-80299822 | None:intergenic | 50.0% | |
| TCTTGGAGCTGATATGCGTC+AGG | - | chr3_1:80300102-80300121 | Msa0379280:intron | 50.0% | |
| TCTTCAAGTGGAGCAGCAGA+CGG | - | chr3_1:80300138-80300157 | Msa0379280:intron | 50.0% | |
| CATTCAGCCCCATACACCAT+AGG | + | chr3_1:80300311-80300330 | None:intergenic | 50.0% | |
| TGTATGGGGCTGAATGTTGC+TGG | - | chr3_1:80300315-80300334 | Msa0379280:intron | 50.0% | |
| ! | GATTTGGTCCTGTGTGCTAG+AGG | - | chr3_1:80300474-80300493 | Msa0379280:intron | 50.0% |
| !! | TTTGGGTGGATTCTAGGGTG+AGG | - | chr3_1:80302172-80302191 | Msa0379280:intron | 50.0% |
| !! | TTGGGTGGATTCTAGGGTGA+GGG | - | chr3_1:80302173-80302192 | Msa0379280:intron | 50.0% |
| TCAATTAAGTCCCTCACCGG+TGG | - | chr3_1:80302197-80302216 | Msa0379280:intron | 50.0% | |
| ACATGGGAAGAGATAGAGGC+AGG | + | chr3_1:80302311-80302330 | None:intergenic | 50.0% | |
| CTCTCTTTGGTTGGGACTTG+AGG | + | chr3_1:80302554-80302573 | None:intergenic | 50.0% | |
| CAATTAAGTCCCTCACCGGT+GGG | + | chr3_1:80302198-80302217 | None:intergenic | 50.0% | |
| TCAATTAAGTCCCTCACCGG+TGG | + | chr3_1:80302197-80302216 | None:intergenic | 50.0% | |
| AACCTTCATGTGCCCTTGTG+TGG | - | chr3_1:80302956-80302975 | Msa0379280:intron | 50.0% | |
| ! | TACCACACAAGGGCACATGA+AGG | + | chr3_1:80302961-80302980 | None:intergenic | 50.0% |
| !! | CGGATCTTTGGAGTGTTGGT+AGG | - | chr3_1:80303149-80303168 | Msa0379280:intron | 50.0% |
| TCCTTGGAGTTTACACCAGG+GGG | + | chr3_1:80303289-80303308 | None:intergenic | 50.0% | |
| ACTTCCCATGAGTTTGGCAG+GGG | - | chr3_1:80303364-80303383 | Msa0379280:intron | 50.0% | |
| TTGAGGGACACTCCGTCATA+AGG | - | chr3_1:80303661-80303680 | Msa0379280:intron | 50.0% | |
| GCAACACTGGACTTAGGTCG+AGG | + | chr3_1:80299140-80299159 | None:intergenic | 55.0% | |
| CGTACTTCTGTCCAACGGAG+AGG | - | chr3_1:80299280-80299299 | Msa0379280:intron | 55.0% | |
| GACTCGTGCATGCACTTCCT+AGG | - | chr3_1:80299336-80299355 | Msa0379280:intron | 55.0% | |
| GACAGGGCATGGAGTAACCT+AGG | + | chr3_1:80299356-80299375 | None:intergenic | 55.0% | |
| CGCACATATACGACAGGGCA+TGG | + | chr3_1:80299367-80299386 | None:intergenic | 55.0% | |
| ! | GAGTGCCGCACATATACGAC+AGG | + | chr3_1:80299373-80299392 | None:intergenic | 55.0% |
| TGCGGCACTCGTCATTCTTG+AGG | - | chr3_1:80299383-80299402 | Msa0379280:intron | 55.0% | |
| GGATGGCACGGATGGAATAC+TGG | - | chr3_1:80299608-80299627 | Msa0379280:intron | 55.0% | |
| ! | TGGTTTGGCCTCTAGCACAC+AGG | + | chr3_1:80300485-80300504 | None:intergenic | 55.0% |
| TCGACTCAGCTCAGCCTAGT+AGG | - | chr3_1:80300749-80300768 | Msa0379280:intron | 55.0% | |
| TGTTCATGGTCCACCGGTGA+GGG | + | chr3_1:80302210-80302229 | None:intergenic | 55.0% | |
| TTGTTCATGGTCCACCGGTG+AGG | + | chr3_1:80302211-80302230 | None:intergenic | 55.0% | |
| TTTGGTTGGGACTTGAGGCG+CGG | + | chr3_1:80302549-80302568 | None:intergenic | 55.0% | |
| ! | GCACCGGCAACCATCTTGTT+TGG | - | chr3_1:80302727-80302746 | Msa0379280:intron | 55.0% |
| TCCCCCTGGTGTAAACTCCA+AGG | - | chr3_1:80303285-80303304 | Msa0379280:CDS | 55.0% | |
| CTTCCCATGAGTTTGGCAGG+GGG | - | chr3_1:80303365-80303384 | Msa0379280:intron | 55.0% | |
| TTCCCATGAGTTTGGCAGGG+GGG | - | chr3_1:80303366-80303385 | Msa0379280:intron | 55.0% | |
| TTCTTCCACCCCATCGGGAC+TGG | + | chr3_1:80299057-80299076 | None:intergenic | 60.0% | |
| ! | GCTGAGCTGAGTCGACTCCA+TGG | + | chr3_1:80300744-80300763 | None:intergenic | 60.0% |
| TTGGTTGGGACTTGAGGCGC+GGG | + | chr3_1:80302548-80302567 | None:intergenic | 60.0% | |
| GGAACATCAACCTCTCCCCC+TGG | - | chr3_1:80303271-80303290 | Msa0379280:CDS | 60.0% | |
| GGAGTTTACACCAGGGGGAG+AGG | + | chr3_1:80303284-80303303 | None:intergenic | 60.0% | |
| CTCCCCCCTGCCAAACTCAT+GGG | + | chr3_1:80303371-80303390 | None:intergenic | 60.0% | |
| TCTCCCCCCTGCCAAACTCA+TGG | + | chr3_1:80303372-80303391 | None:intergenic | 60.0% | |
| TAGGACCAGTCCCGATGGGG+TGG | - | chr3_1:80299049-80299068 | Msa0379280:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 80298541 | 80303876 | 80298541 | ID=Msa0379280;Name=Msa0379280 |
| chr3_1 | mRNA | 80298541 | 80303876 | 80298541 | ID=Msa0379280-mRNA-1;Parent=Msa0379280;Name=Msa0379280-mRNA-1;_AED=0.08;_eAED=0.08;_QI=201|0.87|0.88|1|0.75|0.66|9|435|370 |
| chr3_1 | exon | 80298541 | 80299281 | 80298541 | ID=Msa0379280-mRNA-1:exon:20032;Parent=Msa0379280-mRNA-1 |
| chr3_1 | exon | 80301513 | 80301584 | 80301513 | ID=Msa0379280-mRNA-1:exon:20031;Parent=Msa0379280-mRNA-1 |
| chr3_1 | exon | 80302216 | 80302317 | 80302216 | ID=Msa0379280-mRNA-1:exon:20030;Parent=Msa0379280-mRNA-1 |
| chr3_1 | exon | 80302419 | 80302613 | 80302419 | ID=Msa0379280-mRNA-1:exon:20029;Parent=Msa0379280-mRNA-1 |
| chr3_1 | exon | 80302755 | 80302934 | 80302755 | ID=Msa0379280-mRNA-1:exon:20028;Parent=Msa0379280-mRNA-1 |
| chr3_1 | exon | 80303013 | 80303153 | 80303013 | ID=Msa0379280-mRNA-1:exon:20027;Parent=Msa0379280-mRNA-1 |
| chr3_1 | exon | 80303238 | 80303365 | 80303238 | ID=Msa0379280-mRNA-1:exon:20026;Parent=Msa0379280-mRNA-1 |
| chr3_1 | exon | 80303509 | 80303567 | 80303509 | ID=Msa0379280-mRNA-1:exon:20025;Parent=Msa0379280-mRNA-1 |
| chr3_1 | exon | 80303746 | 80303876 | 80303746 | ID=Msa0379280-mRNA-1:exon:20024;Parent=Msa0379280-mRNA-1 |
| chr3_1 | five_prime_UTR | 80303746 | 80303876 | 80303746 | ID=Msa0379280-mRNA-1:five_prime_utr;Parent=Msa0379280-mRNA-1 |
| chr3_1 | five_prime_UTR | 80303509 | 80303567 | 80303509 | ID=Msa0379280-mRNA-1:five_prime_utr;Parent=Msa0379280-mRNA-1 |
| chr3_1 | five_prime_UTR | 80303355 | 80303365 | 80303355 | ID=Msa0379280-mRNA-1:five_prime_utr;Parent=Msa0379280-mRNA-1 |
| chr3_1 | CDS | 80303238 | 80303354 | 80303238 | ID=Msa0379280-mRNA-1:cds;Parent=Msa0379280-mRNA-1 |
| chr3_1 | CDS | 80303013 | 80303153 | 80303013 | ID=Msa0379280-mRNA-1:cds;Parent=Msa0379280-mRNA-1 |
| chr3_1 | CDS | 80302755 | 80302934 | 80302755 | ID=Msa0379280-mRNA-1:cds;Parent=Msa0379280-mRNA-1 |
| chr3_1 | CDS | 80302419 | 80302613 | 80302419 | ID=Msa0379280-mRNA-1:cds;Parent=Msa0379280-mRNA-1 |
| chr3_1 | CDS | 80302216 | 80302317 | 80302216 | ID=Msa0379280-mRNA-1:cds;Parent=Msa0379280-mRNA-1 |
| chr3_1 | CDS | 80301513 | 80301584 | 80301513 | ID=Msa0379280-mRNA-1:cds;Parent=Msa0379280-mRNA-1 |
| chr3_1 | CDS | 80298976 | 80299281 | 80298976 | ID=Msa0379280-mRNA-1:cds;Parent=Msa0379280-mRNA-1 |
| chr3_1 | three_prime_UTR | 80298541 | 80298975 | 80298541 | ID=Msa0379280-mRNA-1:three_prime_utr;Parent=Msa0379280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
