AlfalfaGEDB | Msa0518950

M. sativa cultivar zhongmu-4 / Msa0518950

KEGG: K15979
GO: GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
PFAM: PF00565.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518950	XP_003602730.1	96.985	199	6	0	1	199	605	803	1.32e-129	399

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518950	sp\|Q8VZG7\|TSN1_ARATH	74.129	201	50	1	1	199	604	804	1.98e-99	313

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518950	G7J2R6	96.985	199	6	0	1	199	605	803	6.30e-130	399

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0031520	Msa0518950	0.802126	6.504992e-49	-8.615850e-47
Msa0062170	Msa0518950	0.850282	1.877857e-60	-8.615850e-47
Msa0150990	Msa0518950	0.803511	3.365925e-49	-8.615850e-47
Msa0207410	Msa0518950	0.801384	9.237591e-49	-8.615850e-47
Msa0209080	Msa0518950	0.804887	1.741167e-49	-8.615850e-47
Msa0217290	Msa0518950	0.820306	7.354263e-53	-8.615850e-47
Msa0234270	Msa0518950	0.850988	1.188989e-60	-8.615850e-47
Msa0234320	Msa0518950	0.834395	3.072042e-56	-8.615850e-47
Msa0259210	Msa0518950	0.801116	1.047881e-48	-8.615850e-47
Msa0354680	Msa0518950	0.841549	4.442812e-58	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518950	MtrunA17_Chr3g0131421	96.985	199	6	0	1	199	605	803	1.21e-133	399

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518950	AT5G07350.1	74.129	201	50	1	1	199	604	804	2.02e-100	313
Msa0518950	AT5G07350.2	74.129	201	50	1	1	199	604	804	2.21e-100	313
Msa0518950	AT5G61780.1	73.762	202	50	2	1	199	599	800	2.23e-99	310

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Find 54 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCTCCTTTGGCAGTGAC+AGG	0.431314	3_4:+70860870	Msa0518950:CDS
AACATTCTTGGGATCCTTAT+GGG	0.327704	3_4:+70860793	Msa0518950:CDS
AATCAGCATGAAAATAACAC+AGG	0.672950	3_4:-70861361	None:intergenic
AATCCTGTCACTGCCAAAGG+AGG	0.620481	3_4:-70860873	None:intergenic
ACTGTTACAGAAGTCTTGGG+AGG	0.720898	3_4:+70861212	Msa0518950:CDS
AGAAGCTAGCTGATTCTGAA+TGG	0.513410	3_4:-70861279	None:intergenic
AGCTAGCTGATTCTGAATGG+AGG	0.650190	3_4:-70861276	None:intergenic
AGGAATCCTGTCACTGCCAA+AGG	0.573089	3_4:-70860876	None:intergenic
AGGACTATGTCACCCTTCTT+AGG	0.289036	3_4:-70861341	None:intergenic
ATCTGGGAAAATTATGTTCA+AGG	0.484541	3_4:+70861031	Msa0518950:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAAAGCTGAAGGTAAGAA+TGG	+	chr3_4:70860940-70860959	Msa0518950:intron	30.0%
AAAAAGCTGAAGGTAAGAAT+GGG	+	chr3_4:70860941-70860960	Msa0518950:intron	30.0%
ATCTGGGAAAATTATGTTCA+AGG	+	chr3_4:70861031-70861050	Msa0518950:CDS	30.0%
TCTGGGAAAATTATGTTCAA+GGG	+	chr3_4:70861032-70861051	Msa0518950:CDS	30.0%
TAACAGTTACCTATGAATGA+AGG	-	chr3_4:70861199-70861218	None:intergenic	30.0%
AATCAGCATGAAAATAACAC+AGG	-	chr3_4:70861364-70861383	None:intergenic	30.0%
TAAAAAGCTGAAGGTAAGAA+TGG	+	chr3_4:70860940-70860959	Msa0518950:intron	30.0%
AAAAAGCTGAAGGTAAGAAT+GGG	+	chr3_4:70860941-70860960	Msa0518950:intron	30.0%
ATCTGGGAAAATTATGTTCA+AGG	+	chr3_4:70861031-70861050	Msa0518950:CDS	30.0%
TCTGGGAAAATTATGTTCAA+GGG	+	chr3_4:70861032-70861051	Msa0518950:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	70860550	70861490	70860550	ID=Msa0518950;Name=Msa0518950
chr3_4	mRNA	70860550	70861490	70860550	ID=Msa0518950-mRNA-1;Parent=Msa0518950;Name=Msa0518950-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0\|0\|0\|1\|1\|1\|4\|0\|226
chr3_4	exon	70860550	70860681	70860550	ID=Msa0518950-mRNA-1:exon:19390;Parent=Msa0518950-mRNA-1
chr3_4	exon	70860764	70860952	70860764	ID=Msa0518950-mRNA-1:exon:19391;Parent=Msa0518950-mRNA-1
chr3_4	exon	70861031	70861108	70861031	ID=Msa0518950-mRNA-1:exon:19392;Parent=Msa0518950-mRNA-1
chr3_4	exon	70861209	70861490	70861209	ID=Msa0518950-mRNA-1:exon:19393;Parent=Msa0518950-mRNA-1
chr3_4	CDS	70860550	70860681	70860550	ID=Msa0518950-mRNA-1:cds;Parent=Msa0518950-mRNA-1
chr3_4	CDS	70860764	70860952	70860764	ID=Msa0518950-mRNA-1:cds;Parent=Msa0518950-mRNA-1
chr3_4	CDS	70861031	70861108	70861031	ID=Msa0518950-mRNA-1:cds;Parent=Msa0518950-mRNA-1
chr3_4	CDS	70861209	70861490	70861209	ID=Msa0518950-mRNA-1:cds;Parent=Msa0518950-mRNA-1

Gene Sequence

>Msa0518950

TTGTTGATTCCTAAAGAAACTTGCAGTATTGCTTTTGCATTCTCTGGTGTCAGATGTCCTGGTCATGAAGAGCCATATTCTGATGAAGCAATTGCGTTAATGAGGCGAAGGATAATGCAGAGAGATGTTGAGATTGAGGTAGAAATAGTTGACAGAACAGGAACATTCTTGGGATCCTTATGGGAGTCAAGAGCCAACGGGGCAGTTCTACTACTCGAAGCTGGTCTTGCAAAACTTCAAACCTCCTTTGGCAGTGACAGGATTCCTGATCTTCACGTCTTAGAGCAAGCTGAACAATCTGCTAAGAGTAAAAAGCTGAAGATCTGGGAAAATTATGTTCAAGGGGAGGTTGTACCCAGTGGTGCAAATGTTGAAAGCAAACAGCAAGAAGTACTTAAGGTAACTGTTACAGAAGTCTTGGGAGGTGGTAAATTTTATGTCCAAACTGTTGGAGATCAAAAGATAGCCTCCATTCAGAATCAGCTAGCTTCTTTGAACTTGAAGGAAGCTCCTGTGATTGGTGTTTTTAATCCTAAGAAGGGTGACATAGTCCTGTGTTATTTTCATGCTGATTCATCTTGGTACCGGGCAATGGTAAGTTCCAATATGATTTTTTTTTGTTACTTTTTTCCTTCTCCCCTTACCAGTTTAGGCATTGCAATCCTGTGGCCATTAAATTAA

Protein sequence

>Msa0518950

LLIPKETCSIAFAFSGVRCPGHEEPYSDEAIALMRRRIMQRDVEIEVEIVDRTGTFLGSLWESRANGAVLLLEAGLAKLQTSFGSDRIPDLHVLEQAEQSAKSKKLKIWENYVQGEVVPSGANVESKQQEVLKVTVTEVLGGGKFYVQTVGDQKIASIQNQLASLNLKEAPVIGVFNPKKGDIVLCYFHADSSWYRAMVSSNMIFFCYFFPSPLTSLGIAILWPLN*