AlfalfaGEDB | Msa0518950

M. sativa cultivar zhongmu-4 / Msa0518950

KEGG: K15979
GO: GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006139 GO:0006396 GO:0006397 GO:0006401 GO:0006402 GO:0006629 GO:0006720 GO:0006721 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009056 GO:0009057 GO:0009058 GO:0009266 GO:0009408 GO:0009506 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009685 GO:0009686 GO:0009791 GO:0009845 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010371 GO:0010372 GO:0010467 GO:0010468 GO:0010494 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016070 GO:0016071 GO:0016101 GO:0016102 GO:0016114 GO:0016787 GO:0016788 GO:0019216 GO:0019222 GO:0019439 GO:0019747 GO:0019752 GO:0030054 GO:0030312 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031967 GO:0031975 GO:0032350 GO:0032352 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034605 GO:0034641 GO:0034655 GO:0035770 GO:0036464 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043436 GO:0043455 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044255 GO:0044260 GO:0044265 GO:0044270 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045828 GO:0045834 GO:0046394 GO:0046483 GO:0046686 GO:0046700 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048519 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060255 GO:0062012 GO:0062013 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0080090 GO:0090304 GO:0090305 GO:0090351 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901575 GO:1901576 GO:1990904
PFAM: PF00565.20

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518950	XP_003602730.1	96.985	199	6	0	1	199	605	803	1.32e-129	399

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518950	sp\|Q8VZG7\|TSN1_ARATH	74.129	201	50	1	1	199	604	804	1.98e-99	313

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518950	G7J2R6	96.985	199	6	0	1	199	605	803	6.30e-130	399

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0031520	Msa0518950	0.802126	6.504992e-49	-8.615850e-47
Msa0062170	Msa0518950	0.850282	1.877857e-60	-8.615850e-47
Msa0150990	Msa0518950	0.803511	3.365925e-49	-8.615850e-47
Msa0207410	Msa0518950	0.801384	9.237591e-49	-8.615850e-47
Msa0209080	Msa0518950	0.804887	1.741167e-49	-8.615850e-47
Msa0217290	Msa0518950	0.820306	7.354263e-53	-8.615850e-47
Msa0234270	Msa0518950	0.850988	1.188989e-60	-8.615850e-47
Msa0234320	Msa0518950	0.834395	3.072042e-56	-8.615850e-47
Msa0379260	Msa0518950	0.820209	7.739356e-53	-8.615850e-47
Msa0379280	Msa0518950	0.813515	2.461484e-51	-8.615850e-47
Msa0450400	Msa0518950	-0.801275	9.721333e-49	-8.615850e-47
Msa0450480	Msa0518950	0.809524	1.813631e-50	-8.615850e-47
Msa0259210	Msa0518950	0.801116	1.047881e-48	-8.615850e-47
Msa0354680	Msa0518950	0.841549	4.442812e-58	-8.615850e-47
Msa0518930	Msa0518950	0.919944	2.388335e-87	-8.615850e-47
Msa0518940	Msa0518950	0.826266	2.981885e-54	-8.615850e-47
Msa0518950	Msa0518960	0.826203	3.085802e-54	-8.615850e-47
Msa0518950	Msa0518970	0.917302	6.263840e-86	-8.615850e-47
Msa0518950	Msa0518980	0.919064	7.173811e-87	-8.615850e-47
Msa0518950	Msa0519000	0.812277	4.598051e-51	-8.615850e-47
Msa0518950	Msa0663800	0.817110	3.908008e-52	-8.615850e-47
Msa0518950	Msa0750650	0.811485	6.838726e-51	-8.615850e-47
Msa0518950	Msa0811200	0.805017	1.635161e-49	-8.615850e-47
Msa0518950	Msa0826320	0.800675	1.289402e-48	-8.615850e-47
Msa0518950	Msa0944610	0.801505	8.725165e-49	-8.615850e-47
Msa0518950	Msa0974950	0.806726	7.153140e-50	-8.615850e-47
Msa0518950	Msa1099960	0.803782	2.957215e-49	-8.615850e-47
Msa0518950	Msa1119930	0.804771	1.840413e-49	-8.615850e-47
Msa0518950	Msa1388160	0.801799	7.594197e-49	-8.615850e-47
Msa0518950	Msa1407940	0.816563	5.183558e-52	-8.615850e-47
Msa0518950	Msa1407970	0.815488	9.009002e-52	-8.615850e-47
Msa0518950	Msa1437270	0.822684	2.075991e-53	-8.615850e-47
Msa0518950	Msa1454450	0.804390	2.210291e-49	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518950	MtrunA17_Chr3g0131421	96.985	199	6	0	1	199	605	803	1.21e-133	399

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0518950	AT5G07350.1	74.129	201	50	1	1	199	604	804	2.02e-100	313
Msa0518950	AT5G07350.2	74.129	201	50	1	1	199	604	804	2.21e-100	313
Msa0518950	AT5G61780.1	73.762	202	50	2	1	199	599	800	2.23e-99	310

Find 54 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAGCTCCCTATTTAATTTAA+TGG	0.115965	3_4:-70861479	None:intergenic
GCAATACTGCAAGTTTCTTT+AGG	0.246025	3_4:-70860559	None:intergenic
AGGACTATGTCACCCTTCTT+AGG	0.289036	3_4:-70861341	None:intergenic
GAACATTCTTGGGATCCTTA+TGG	0.295382	3_4:+70860792	Msa0518950:CDS
AACATTCTTGGGATCCTTAT+GGG	0.327704	3_4:+70860793	Msa0518950:CDS
GCAATTGCTTCATCAGAATA+TGG	0.336309	3_4:-70860622	None:intergenic
CCTTCTCCCCTTACCAGTTT+AGG	0.359784	3_4:+70861440	Msa0518950:CDS
GCAAAACTTCAAACCTCCTT+TGG	0.366862	3_4:+70860860	Msa0518950:CDS
GCTAGCTTCTTTGAACTTGA+AGG	0.385526	3_4:+70861292	Msa0518950:CDS
GCTTTCAACATTTGCACCAC+TGG	0.390231	3_4:-70861065	None:intergenic
CAGGATTGCAATGCCTAAAC+TGG	0.395502	3_4:-70861453	None:intergenic
TTCTCTGGTGTCAGATGTCC+TGG	0.396588	3_4:+70860589	Msa0518950:CDS
TGACAGAACAGGAACATTCT+TGG	0.399594	3_4:+70860781	Msa0518950:CDS
ATGCTGATTCATCTTGGTAC+CGG	0.420935	3_4:+70861375	Msa0518950:CDS
AAACCTCCTTTGGCAGTGAC+AGG	0.431314	3_4:+70860870	Msa0518950:CDS
TGCTCTAAGACGTGAAGATC+AGG	0.438375	3_4:-70860896	None:intergenic
GACAGAACAGGAACATTCTT+GGG	0.442564	3_4:+70860782	Msa0518950:CDS
CTATTTAATTTAATGGCCAC+AGG	0.457853	3_4:-70861472	None:intergenic
GGTAACTGTTACAGAAGTCT+TGG	0.462157	3_4:+70861208	Msa0518950:intron
ATCTGGGAAAATTATGTTCA+AGG	0.484541	3_4:+70861031	Msa0518950:CDS
TATGGGAGTCAAGAGCCAAC+GGG	0.490754	3_4:+70860810	Msa0518950:CDS
TTGCAATGCCTAAACTGGTA+AGG	0.492635	3_4:-70861448	None:intergenic
CTTTCAACATTTGCACCACT+GGG	0.493153	3_4:-70861064	None:intergenic
TTGAAGGAAGCTCCTGTGAT+TGG	0.494590	3_4:+70861308	Msa0518950:CDS
CCTAAACTGGTAAGGGGAGA+AGG	0.495510	3_4:-70861440	None:intergenic
GTAGAAATAGTTGACAGAAC+AGG	0.499233	3_4:+70860770	Msa0518950:CDS
TGCTGATTCATCTTGGTACC+GGG	0.505453	3_4:+70861376	Msa0518950:CDS
AGAAGCTAGCTGATTCTGAA+TGG	0.513410	3_4:-70861279	None:intergenic
CAAACAGCAAGAAGTACTTA+AGG	0.517991	3_4:+70861087	Msa0518950:CDS
TATTGGAACTTACCATTGCC+CGG	0.518709	3_4:-70861394	None:intergenic
GTAACTGTTACAGAAGTCTT+GGG	0.519081	3_4:+70861209	Msa0518950:CDS
TCTGGGAAAATTATGTTCAA+GGG	0.521252	3_4:+70861032	Msa0518950:CDS
TGCAATGCCTAAACTGGTAA+GGG	0.527004	3_4:-70861447	None:intergenic
TTCATCTTGGTACCGGGCAA+TGG	0.536616	3_4:+70861382	Msa0518950:CDS
ATGAAGCAATTGCGTTAATG+AGG	0.554316	3_4:+70860632	Msa0518950:CDS
GATAATGCAGAGAGATGTTG+AGG	0.555552	3_4:+70860660	Msa0518950:CDS
GTTGGCTCTTGACTCCCATA+AGG	0.558459	3_4:-70860807	None:intergenic
AGGAATCCTGTCACTGCCAA+AGG	0.573089	3_4:-70860876	None:intergenic
GCAGTTCTACTACTCGAAGC+TGG	0.583274	3_4:+70860833	Msa0518950:CDS
GTTACAGAAGTCTTGGGAGG+TGG	0.594413	3_4:+70861215	Msa0518950:CDS
CAATTGCGTTAATGAGGCGA+AGG	0.599014	3_4:+70860638	Msa0518950:CDS
TTATGGGAGTCAAGAGCCAA+CGG	0.604337	3_4:+70860809	Msa0518950:CDS
CTGGGAAAATTATGTTCAAG+GGG	0.607394	3_4:+70861033	Msa0518950:CDS
GTTTAGGCATTGCAATCCTG+TGG	0.609654	3_4:+70861456	Msa0518950:CDS
GAGTAGTAGAACTGCCCCGT+TGG	0.612369	3_4:-70860825	None:intergenic
GAATATGGCTCTTCATGACC+AGG	0.615614	3_4:-70860607	None:intergenic
AATCCTGTCACTGCCAAAGG+AGG	0.620481	3_4:-70860873	None:intergenic
CAAGGGGAGGTTGTACCCAG+TGG	0.630982	3_4:+70861049	Msa0518950:CDS
GGAAAATTATGTTCAAGGGG+AGG	0.631402	3_4:+70861036	Msa0518950:CDS
GCAATGCCTAAACTGGTAAG+GGG	0.648996	3_4:-70861446	None:intergenic
AGCTAGCTGATTCTGAATGG+AGG	0.650190	3_4:-70861276	None:intergenic
AATCAGCATGAAAATAACAC+AGG	0.672950	3_4:-70861361	None:intergenic
ACTGTTACAGAAGTCTTGGG+AGG	0.720898	3_4:+70861212	Msa0518950:CDS
ATGGGAGTCAAGAGCCAACG+GGG	0.733485	3_4:+70860811	Msa0518950:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	GTAACAAAAAAAAATCATAT+TGG	-	chr3_4:70861414-70861433	None:intergenic	15.0%
!!	GTAACAAAAAAAAATCATAT+TGG	-	chr3_4:70861414-70861433	None:intergenic	15.0%
!!	TGATTATGTCAAATATAGTT+GGG	-	chr3_4:70860969-70860988	None:intergenic	20.0%
!!!	TTTTCTTTAGAATAATAGCA+GGG	-	chr3_4:70861000-70861019	None:intergenic	20.0%
!!!	ATTTTCTTTAGAATAATAGC+AGG	-	chr3_4:70861001-70861020	None:intergenic	20.0%
!!	TGATTATGTCAAATATAGTT+GGG	-	chr3_4:70860969-70860988	None:intergenic	20.0%
!!!	TTTTCTTTAGAATAATAGCA+GGG	-	chr3_4:70861000-70861019	None:intergenic	20.0%
!!!	ATTTTCTTTAGAATAATAGC+AGG	-	chr3_4:70861001-70861020	None:intergenic	20.0%
!!	CATATAATTTTTGCAGATTG+AGG	+	chr3_4:70860748-70860767	Msa0518950:intron	25.0%
!	CTGATTATGTCAAATATAGT+TGG	-	chr3_4:70860970-70860989	None:intergenic	25.0%
!!	AAATTTTATGTCCAAACTGT+TGG	+	chr3_4:70861239-70861258	Msa0518950:CDS	25.0%
!!	CATATAATTTTTGCAGATTG+AGG	+	chr3_4:70860748-70860767	Msa0518950:intron	25.0%
!	CTGATTATGTCAAATATAGT+TGG	-	chr3_4:70860970-70860989	None:intergenic	25.0%
!!	AAATTTTATGTCCAAACTGT+TGG	+	chr3_4:70861239-70861258	Msa0518950:CDS	25.0%
	TAAAAAGCTGAAGGTAAGAA+TGG	+	chr3_4:70860940-70860959	Msa0518950:intron	30.0%
	AAAAAGCTGAAGGTAAGAAT+GGG	+	chr3_4:70860941-70860960	Msa0518950:intron	30.0%
!!	AGAAAATTGTTTTGCAGATC+TGG	+	chr3_4:70861014-70861033	Msa0518950:intron	30.0%
!!	GAAAATTGTTTTGCAGATCT+GGG	+	chr3_4:70861015-70861034	Msa0518950:intron	30.0%
	ATCTGGGAAAATTATGTTCA+AGG	+	chr3_4:70861031-70861050	Msa0518950:CDS	30.0%
	TCTGGGAAAATTATGTTCAA+GGG	+	chr3_4:70861032-70861051	Msa0518950:CDS	30.0%
	TAACAGTTACCTATGAATGA+AGG	-	chr3_4:70861199-70861218	None:intergenic	30.0%
!!	TGGTGTTTTTAATCCTAAGA+AGG	+	chr3_4:70861328-70861347	Msa0518950:CDS	30.0%
!!	GGTGTTTTTAATCCTAAGAA+GGG	+	chr3_4:70861329-70861348	Msa0518950:CDS	30.0%
	AATCAGCATGAAAATAACAC+AGG	-	chr3_4:70861364-70861383	None:intergenic	30.0%
!!!	ATTTTCATGCTGATTCATCT+TGG	+	chr3_4:70861369-70861388	Msa0518950:CDS	30.0%
	TAAAAAGCTGAAGGTAAGAA+TGG	+	chr3_4:70860940-70860959	Msa0518950:intron	30.0%
	AAAAAGCTGAAGGTAAGAAT+GGG	+	chr3_4:70860941-70860960	Msa0518950:intron	30.0%
!!	AGAAAATTGTTTTGCAGATC+TGG	+	chr3_4:70861014-70861033	Msa0518950:intron	30.0%
!!	GAAAATTGTTTTGCAGATCT+GGG	+	chr3_4:70861015-70861034	Msa0518950:intron	30.0%
	ATCTGGGAAAATTATGTTCA+AGG	+	chr3_4:70861031-70861050	Msa0518950:CDS	30.0%
	TCTGGGAAAATTATGTTCAA+GGG	+	chr3_4:70861032-70861051	Msa0518950:CDS	30.0%
	TAACAGTTACCTATGAATGA+AGG	-	chr3_4:70861199-70861218	None:intergenic	30.0%
!!	TGGTGTTTTTAATCCTAAGA+AGG	+	chr3_4:70861328-70861347	Msa0518950:CDS	30.0%
!!	GGTGTTTTTAATCCTAAGAA+GGG	+	chr3_4:70861329-70861348	Msa0518950:CDS	30.0%
	AATCAGCATGAAAATAACAC+AGG	-	chr3_4:70861364-70861383	None:intergenic	30.0%
!!!	ATTTTCATGCTGATTCATCT+TGG	+	chr3_4:70861369-70861388	Msa0518950:CDS	30.0%
	GCAATACTGCAAGTTTCTTT+AGG	-	chr3_4:70860562-70860581	None:intergenic	35.0%
!!	AGTATTGCTTTTGCATTCTC+TGG	+	chr3_4:70860574-70860593	Msa0518950:CDS	35.0%
	GCAATTGCTTCATCAGAATA+TGG	-	chr3_4:70860625-70860644	None:intergenic	35.0%
	ATGAAGCAATTGCGTTAATG+AGG	+	chr3_4:70860632-70860651	Msa0518950:CDS	35.0%
	AATAAACAACACTCAGACTC+AGG	-	chr3_4:70860715-70860734	None:intergenic	35.0%
	GTAGAAATAGTTGACAGAAC+AGG	+	chr3_4:70860770-70860789	Msa0518950:CDS	35.0%
	AACATTCTTGGGATCCTTAT+GGG	+	chr3_4:70860793-70860812	Msa0518950:CDS	35.0%
	TGCTAAGAGTAAAAAGCTGA+AGG	+	chr3_4:70860931-70860950	Msa0518950:CDS	35.0%
	AAAAGCTGAAGGTAAGAATG+GGG	+	chr3_4:70860942-70860961	Msa0518950:intron	35.0%
	CTGGGAAAATTATGTTCAAG+GGG	+	chr3_4:70861033-70861052	Msa0518950:CDS	35.0%
!!	CAAACAGCAAGAAGTACTTA+AGG	+	chr3_4:70861087-70861106	Msa0518950:CDS	35.0%
	GTAACTGTTACAGAAGTCTT+GGG	+	chr3_4:70861209-70861228	Msa0518950:CDS	35.0%
!	TCTTTTGATCTCCAACAGTT+TGG	-	chr3_4:70861253-70861272	None:intergenic	35.0%
	GGATTAAAAACACCAATCAC+AGG	-	chr3_4:70861323-70861342	None:intergenic	35.0%
	GCAATACTGCAAGTTTCTTT+AGG	-	chr3_4:70860562-70860581	None:intergenic	35.0%
!!	AGTATTGCTTTTGCATTCTC+TGG	+	chr3_4:70860574-70860593	Msa0518950:CDS	35.0%
	GCAATTGCTTCATCAGAATA+TGG	-	chr3_4:70860625-70860644	None:intergenic	35.0%
	ATGAAGCAATTGCGTTAATG+AGG	+	chr3_4:70860632-70860651	Msa0518950:CDS	35.0%
	AATAAACAACACTCAGACTC+AGG	-	chr3_4:70860715-70860734	None:intergenic	35.0%
	GTAGAAATAGTTGACAGAAC+AGG	+	chr3_4:70860770-70860789	Msa0518950:CDS	35.0%
	AACATTCTTGGGATCCTTAT+GGG	+	chr3_4:70860793-70860812	Msa0518950:CDS	35.0%
	TGCTAAGAGTAAAAAGCTGA+AGG	+	chr3_4:70860931-70860950	Msa0518950:CDS	35.0%
	AAAAGCTGAAGGTAAGAATG+GGG	+	chr3_4:70860942-70860961	Msa0518950:intron	35.0%
	CTGGGAAAATTATGTTCAAG+GGG	+	chr3_4:70861033-70861052	Msa0518950:CDS	35.0%
!!	CAAACAGCAAGAAGTACTTA+AGG	+	chr3_4:70861087-70861106	Msa0518950:CDS	35.0%
	GTAACTGTTACAGAAGTCTT+GGG	+	chr3_4:70861209-70861228	Msa0518950:CDS	35.0%
!	TCTTTTGATCTCCAACAGTT+TGG	-	chr3_4:70861253-70861272	None:intergenic	35.0%
	GGATTAAAAACACCAATCAC+AGG	-	chr3_4:70861323-70861342	None:intergenic	35.0%
	GATAATGCAGAGAGATGTTG+AGG	+	chr3_4:70860660-70860679	Msa0518950:CDS	40.0%
	TGACAGAACAGGAACATTCT+TGG	+	chr3_4:70860781-70860800	Msa0518950:CDS	40.0%
	GACAGAACAGGAACATTCTT+GGG	+	chr3_4:70860782-70860801	Msa0518950:CDS	40.0%
	GAACATTCTTGGGATCCTTA+TGG	+	chr3_4:70860792-70860811	Msa0518950:CDS	40.0%
	GCAAAACTTCAAACCTCCTT+TGG	+	chr3_4:70860860-70860879	Msa0518950:CDS	40.0%
	GGAAAATTATGTTCAAGGGG+AGG	+	chr3_4:70861036-70861055	Msa0518950:CDS	40.0%
	CTTTCAACATTTGCACCACT+GGG	-	chr3_4:70861067-70861086	None:intergenic	40.0%
!!	AAGAAGTACTTAAGGTGCGT+TGG	+	chr3_4:70861095-70861114	Msa0518950:intron	40.0%
!	TGCCCCTTGTTTGTGTTATT+GGG	+	chr3_4:70861153-70861172	Msa0518950:intron	40.0%
	TCCCCCAATAACACAAACAA+GGG	-	chr3_4:70861159-70861178	None:intergenic	40.0%
	TTCCCCCAATAACACAAACA+AGG	-	chr3_4:70861160-70861179	None:intergenic	40.0%
	ATCCACTGTCCTTCATTCAT+AGG	+	chr3_4:70861187-70861206	Msa0518950:intron	40.0%
	TACCTATGAATGAAGGACAG+TGG	-	chr3_4:70861192-70861211	None:intergenic	40.0%
	GGTAACTGTTACAGAAGTCT+TGG	+	chr3_4:70861208-70861227	Msa0518950:intron	40.0%
!	AGAAGCTAGCTGATTCTGAA+TGG	-	chr3_4:70861282-70861301	None:intergenic	40.0%
!	GCTAGCTTCTTTGAACTTGA+AGG	+	chr3_4:70861292-70861311	Msa0518950:CDS	40.0%
!!	ATGCTGATTCATCTTGGTAC+CGG	+	chr3_4:70861375-70861394	Msa0518950:CDS	40.0%
	TATTGGAACTTACCATTGCC+CGG	-	chr3_4:70861397-70861416	None:intergenic	40.0%
	TGCAATGCCTAAACTGGTAA+GGG	-	chr3_4:70861450-70861469	None:intergenic	40.0%
	TTGCAATGCCTAAACTGGTA+AGG	-	chr3_4:70861451-70861470	None:intergenic	40.0%
	GATAATGCAGAGAGATGTTG+AGG	+	chr3_4:70860660-70860679	Msa0518950:CDS	40.0%
	TGACAGAACAGGAACATTCT+TGG	+	chr3_4:70860781-70860800	Msa0518950:CDS	40.0%
	GACAGAACAGGAACATTCTT+GGG	+	chr3_4:70860782-70860801	Msa0518950:CDS	40.0%
	GAACATTCTTGGGATCCTTA+TGG	+	chr3_4:70860792-70860811	Msa0518950:CDS	40.0%
	GCAAAACTTCAAACCTCCTT+TGG	+	chr3_4:70860860-70860879	Msa0518950:CDS	40.0%
	GGAAAATTATGTTCAAGGGG+AGG	+	chr3_4:70861036-70861055	Msa0518950:CDS	40.0%
	CTTTCAACATTTGCACCACT+GGG	-	chr3_4:70861067-70861086	None:intergenic	40.0%
!!	AAGAAGTACTTAAGGTGCGT+TGG	+	chr3_4:70861095-70861114	Msa0518950:intron	40.0%
!	TGCCCCTTGTTTGTGTTATT+GGG	+	chr3_4:70861153-70861172	Msa0518950:intron	40.0%
	TCCCCCAATAACACAAACAA+GGG	-	chr3_4:70861159-70861178	None:intergenic	40.0%
	TTCCCCCAATAACACAAACA+AGG	-	chr3_4:70861160-70861179	None:intergenic	40.0%
	ATCCACTGTCCTTCATTCAT+AGG	+	chr3_4:70861187-70861206	Msa0518950:intron	40.0%
	TACCTATGAATGAAGGACAG+TGG	-	chr3_4:70861192-70861211	None:intergenic	40.0%
	GGTAACTGTTACAGAAGTCT+TGG	+	chr3_4:70861208-70861227	Msa0518950:intron	40.0%
!	AGAAGCTAGCTGATTCTGAA+TGG	-	chr3_4:70861282-70861301	None:intergenic	40.0%
!	GCTAGCTTCTTTGAACTTGA+AGG	+	chr3_4:70861292-70861311	Msa0518950:CDS	40.0%
!!	ATGCTGATTCATCTTGGTAC+CGG	+	chr3_4:70861375-70861394	Msa0518950:CDS	40.0%
	TATTGGAACTTACCATTGCC+CGG	-	chr3_4:70861397-70861416	None:intergenic	40.0%
	TGCAATGCCTAAACTGGTAA+GGG	-	chr3_4:70861450-70861469	None:intergenic	40.0%
	TTGCAATGCCTAAACTGGTA+AGG	-	chr3_4:70861451-70861470	None:intergenic	40.0%
	GAATATGGCTCTTCATGACC+AGG	-	chr3_4:70860610-70860629	None:intergenic	45.0%
	CAATTGCGTTAATGAGGCGA+AGG	+	chr3_4:70860638-70860657	Msa0518950:CDS	45.0%
	CAGGAATCTTGAGCTCAGAA+AGG	-	chr3_4:70860696-70860715	None:intergenic	45.0%
	TTATGGGAGTCAAGAGCCAA+CGG	+	chr3_4:70860809-70860828	Msa0518950:CDS	45.0%
!!	TGCTCTAAGACGTGAAGATC+AGG	-	chr3_4:70860899-70860918	None:intergenic	45.0%
	GCTTTCAACATTTGCACCAC+TGG	-	chr3_4:70861068-70861087	None:intergenic	45.0%
	CTTAAGGTGCGTTGGAATGT+AGG	+	chr3_4:70861103-70861122	Msa0518950:intron	45.0%
!	GTGCCCCTTGTTTGTGTTAT+TGG	+	chr3_4:70861152-70861171	Msa0518950:intron	45.0%
!	GCCCCTTGTTTGTGTTATTG+GGG	+	chr3_4:70861154-70861173	Msa0518950:intron	45.0%
	CCCCCAATAACACAAACAAG+GGG	-	chr3_4:70861158-70861177	None:intergenic	45.0%
!	CCCCTTGTTTGTGTTATTGG+GGG	+	chr3_4:70861155-70861174	Msa0518950:intron	45.0%
	ACTGTTACAGAAGTCTTGGG+AGG	+	chr3_4:70861212-70861231	Msa0518950:CDS	45.0%
!	AGCTAGCTGATTCTGAATGG+AGG	-	chr3_4:70861279-70861298	None:intergenic	45.0%
	TTGAAGGAAGCTCCTGTGAT+TGG	+	chr3_4:70861308-70861327	Msa0518950:CDS	45.0%
	AGGACTATGTCACCCTTCTT+AGG	-	chr3_4:70861344-70861363	None:intergenic	45.0%
!!	TGCTGATTCATCTTGGTACC+GGG	+	chr3_4:70861376-70861395	Msa0518950:CDS	45.0%
	GCAATGCCTAAACTGGTAAG+GGG	-	chr3_4:70861449-70861468	None:intergenic	45.0%
	CAGGATTGCAATGCCTAAAC+TGG	-	chr3_4:70861456-70861475	None:intergenic	45.0%
!	GTTTAGGCATTGCAATCCTG+TGG	+	chr3_4:70861456-70861475	Msa0518950:CDS	45.0%
	GAATATGGCTCTTCATGACC+AGG	-	chr3_4:70860610-70860629	None:intergenic	45.0%
	CAATTGCGTTAATGAGGCGA+AGG	+	chr3_4:70860638-70860657	Msa0518950:CDS	45.0%
	CAGGAATCTTGAGCTCAGAA+AGG	-	chr3_4:70860696-70860715	None:intergenic	45.0%
	TTATGGGAGTCAAGAGCCAA+CGG	+	chr3_4:70860809-70860828	Msa0518950:CDS	45.0%
!!	TGCTCTAAGACGTGAAGATC+AGG	-	chr3_4:70860899-70860918	None:intergenic	45.0%
	GCTTTCAACATTTGCACCAC+TGG	-	chr3_4:70861068-70861087	None:intergenic	45.0%
	CTTAAGGTGCGTTGGAATGT+AGG	+	chr3_4:70861103-70861122	Msa0518950:intron	45.0%
!	GTGCCCCTTGTTTGTGTTAT+TGG	+	chr3_4:70861152-70861171	Msa0518950:intron	45.0%
!	GCCCCTTGTTTGTGTTATTG+GGG	+	chr3_4:70861154-70861173	Msa0518950:intron	45.0%
	CCCCCAATAACACAAACAAG+GGG	-	chr3_4:70861158-70861177	None:intergenic	45.0%
!	CCCCTTGTTTGTGTTATTGG+GGG	+	chr3_4:70861155-70861174	Msa0518950:intron	45.0%
	ACTGTTACAGAAGTCTTGGG+AGG	+	chr3_4:70861212-70861231	Msa0518950:CDS	45.0%
!	AGCTAGCTGATTCTGAATGG+AGG	-	chr3_4:70861279-70861298	None:intergenic	45.0%
	TTGAAGGAAGCTCCTGTGAT+TGG	+	chr3_4:70861308-70861327	Msa0518950:CDS	45.0%
	AGGACTATGTCACCCTTCTT+AGG	-	chr3_4:70861344-70861363	None:intergenic	45.0%
!!	TGCTGATTCATCTTGGTACC+GGG	+	chr3_4:70861376-70861395	Msa0518950:CDS	45.0%
	GCAATGCCTAAACTGGTAAG+GGG	-	chr3_4:70861449-70861468	None:intergenic	45.0%
	CAGGATTGCAATGCCTAAAC+TGG	-	chr3_4:70861456-70861475	None:intergenic	45.0%
!	GTTTAGGCATTGCAATCCTG+TGG	+	chr3_4:70861456-70861475	Msa0518950:CDS	45.0%
!	TTCTCTGGTGTCAGATGTCC+TGG	+	chr3_4:70860589-70860608	Msa0518950:CDS	50.0%
!	GTTGGCTCTTGACTCCCATA+AGG	-	chr3_4:70860810-70860829	None:intergenic	50.0%
	TATGGGAGTCAAGAGCCAAC+GGG	+	chr3_4:70860810-70860829	Msa0518950:CDS	50.0%
	GCAGTTCTACTACTCGAAGC+TGG	+	chr3_4:70860833-70860852	Msa0518950:CDS	50.0%
	AAACCTCCTTTGGCAGTGAC+AGG	+	chr3_4:70860870-70860889	Msa0518950:CDS	50.0%
	AATCCTGTCACTGCCAAAGG+AGG	-	chr3_4:70860876-70860895	None:intergenic	50.0%
	AGGAATCCTGTCACTGCCAA+AGG	-	chr3_4:70860879-70860898	None:intergenic	50.0%
	GTTACAGAAGTCTTGGGAGG+TGG	+	chr3_4:70861215-70861234	Msa0518950:CDS	50.0%
!	TTCATCTTGGTACCGGGCAA+TGG	+	chr3_4:70861382-70861401	Msa0518950:CDS	50.0%
	CCTAAACTGGTAAGGGGAGA+AGG	-	chr3_4:70861443-70861462	None:intergenic	50.0%
	CCTTCTCCCCTTACCAGTTT+AGG	+	chr3_4:70861440-70861459	Msa0518950:CDS	50.0%
!	TTCTCTGGTGTCAGATGTCC+TGG	+	chr3_4:70860589-70860608	Msa0518950:CDS	50.0%
!	GTTGGCTCTTGACTCCCATA+AGG	-	chr3_4:70860810-70860829	None:intergenic	50.0%
	TATGGGAGTCAAGAGCCAAC+GGG	+	chr3_4:70860810-70860829	Msa0518950:CDS	50.0%
	GCAGTTCTACTACTCGAAGC+TGG	+	chr3_4:70860833-70860852	Msa0518950:CDS	50.0%
	AAACCTCCTTTGGCAGTGAC+AGG	+	chr3_4:70860870-70860889	Msa0518950:CDS	50.0%
	AATCCTGTCACTGCCAAAGG+AGG	-	chr3_4:70860876-70860895	None:intergenic	50.0%
	AGGAATCCTGTCACTGCCAA+AGG	-	chr3_4:70860879-70860898	None:intergenic	50.0%
	GTTACAGAAGTCTTGGGAGG+TGG	+	chr3_4:70861215-70861234	Msa0518950:CDS	50.0%
!	TTCATCTTGGTACCGGGCAA+TGG	+	chr3_4:70861382-70861401	Msa0518950:CDS	50.0%
	CCTAAACTGGTAAGGGGAGA+AGG	-	chr3_4:70861443-70861462	None:intergenic	50.0%
	CCTTCTCCCCTTACCAGTTT+AGG	+	chr3_4:70861440-70861459	Msa0518950:CDS	50.0%
	ATGGGAGTCAAGAGCCAACG+GGG	+	chr3_4:70860811-70860830	Msa0518950:CDS	55.0%
	GAGTAGTAGAACTGCCCCGT+TGG	-	chr3_4:70860828-70860847	None:intergenic	55.0%
	ATGGGAGTCAAGAGCCAACG+GGG	+	chr3_4:70860811-70860830	Msa0518950:CDS	55.0%
	GAGTAGTAGAACTGCCCCGT+TGG	-	chr3_4:70860828-70860847	None:intergenic	55.0%
	CAAGGGGAGGTTGTACCCAG+TGG	+	chr3_4:70861049-70861068	Msa0518950:CDS	60.0%
	CAAGGGGAGGTTGTACCCAG+TGG	+	chr3_4:70861049-70861068	Msa0518950:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	70860550	70861490	70860550	ID=Msa0518950;Name=Msa0518950
chr3_4	mRNA	70860550	70861490	70860550	ID=Msa0518950-mRNA-1;Parent=Msa0518950;Name=Msa0518950-mRNA-1;_AED=0.51;_eAED=0.51;_QI=0\|0\|0\|1\|1\|1\|4\|0\|226
chr3_4	exon	70860550	70860681	70860550	ID=Msa0518950-mRNA-1:exon:19390;Parent=Msa0518950-mRNA-1
chr3_4	exon	70860764	70860952	70860764	ID=Msa0518950-mRNA-1:exon:19391;Parent=Msa0518950-mRNA-1
chr3_4	exon	70861031	70861108	70861031	ID=Msa0518950-mRNA-1:exon:19392;Parent=Msa0518950-mRNA-1
chr3_4	exon	70861209	70861490	70861209	ID=Msa0518950-mRNA-1:exon:19393;Parent=Msa0518950-mRNA-1
chr3_4	CDS	70860550	70860681	70860550	ID=Msa0518950-mRNA-1:cds;Parent=Msa0518950-mRNA-1
chr3_4	CDS	70860764	70860952	70860764	ID=Msa0518950-mRNA-1:cds;Parent=Msa0518950-mRNA-1
chr3_4	CDS	70861031	70861108	70861031	ID=Msa0518950-mRNA-1:cds;Parent=Msa0518950-mRNA-1
chr3_4	CDS	70861209	70861490	70861209	ID=Msa0518950-mRNA-1:cds;Parent=Msa0518950-mRNA-1

Gene Sequence

>Msa0518950

TTGTTGATTCCTAAAGAAACTTGCAGTATTGCTTTTGCATTCTCTGGTGTCAGATGTCCTGGTCATGAAGAGCCATATTCTGATGAAGCAATTGCGTTAATGAGGCGAAGGATAATGCAGAGAGATGTTGAGATTGAGGTAGAAATAGTTGACAGAACAGGAACATTCTTGGGATCCTTATGGGAGTCAAGAGCCAACGGGGCAGTTCTACTACTCGAAGCTGGTCTTGCAAAACTTCAAACCTCCTTTGGCAGTGACAGGATTCCTGATCTTCACGTCTTAGAGCAAGCTGAACAATCTGCTAAGAGTAAAAAGCTGAAGATCTGGGAAAATTATGTTCAAGGGGAGGTTGTACCCAGTGGTGCAAATGTTGAAAGCAAACAGCAAGAAGTACTTAAGGTAACTGTTACAGAAGTCTTGGGAGGTGGTAAATTTTATGTCCAAACTGTTGGAGATCAAAAGATAGCCTCCATTCAGAATCAGCTAGCTTCTTTGAACTTGAAGGAAGCTCCTGTGATTGGTGTTTTTAATCCTAAGAAGGGTGACATAGTCCTGTGTTATTTTCATGCTGATTCATCTTGGTACCGGGCAATGGTAAGTTCCAATATGATTTTTTTTTGTTACTTTTTTCCTTCTCCCCTTACCAGTTTAGGCATTGCAATCCTGTGGCCATTAAATTAA

Protein sequence

>Msa0518950

LLIPKETCSIAFAFSGVRCPGHEEPYSDEAIALMRRRIMQRDVEIEVEIVDRTGTFLGSLWESRANGAVLLLEAGLAKLQTSFGSDRIPDLHVLEQAEQSAKSKKLKIWENYVQGEVVPSGANVESKQQEVLKVTVTEVLGGGKFYVQTVGDQKIASIQNQLASLNLKEAPVIGVFNPKKGDIVLCYFHADSSWYRAMVSSNMIFFCYFFPSPLTSLGIAILWPLN*