Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407940 | AES73162.2 | 70.506 | 356 | 69 | 4 | 1 | 356 | 1 | 320 | 2.15e-168 | 483 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407940 | sp|Q56X46|MSL2_ARATH | 35.714 | 224 | 104 | 10 | 137 | 341 | 309 | 511 | 1.61e-21 | 99.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407940 | G7J537 | 70.506 | 356 | 69 | 4 | 1 | 356 | 1 | 320 | 1.03e-168 | 483 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0379280 | Msa1407940 | 0.984893 | 6.634685e-162 | -8.615850e-47 |
| Msa0518930 | Msa1407940 | 0.872564 | 2.886398e-67 | -8.615850e-47 |
| Msa0518950 | Msa1407940 | 0.816563 | 5.183558e-52 | -8.615850e-47 |
| Msa0518970 | Msa1407940 | 0.831643 | 1.485689e-55 | -8.615850e-47 |
| Msa0518980 | Msa1407940 | 0.861056 | 1.340948e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407940 | MtrunA17_Chr3g0132941 | 70.506 | 356 | 69 | 4 | 1 | 356 | 1 | 320 | 1.97e-172 | 483 |
| Msa1407940 | MtrunA17_Chr3g0132931 | 39.004 | 241 | 101 | 10 | 147 | 361 | 327 | 547 | 6.31e-25 | 106 |
| Msa1407940 | MtrunA17_Chr5g0412241 | 39.062 | 192 | 90 | 7 | 137 | 322 | 306 | 476 | 3.62e-21 | 95.1 |
| Msa1407940 | MtrunA17_Chr3g0132961 | 37.255 | 204 | 93 | 8 | 147 | 335 | 330 | 513 | 7.06e-20 | 91.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407940 | AT5G10490.2 | 35.714 | 224 | 104 | 10 | 137 | 341 | 281 | 483 | 1.52e-22 | 99.8 |
| Msa1407940 | AT5G10490.1 | 35.714 | 224 | 104 | 10 | 137 | 341 | 309 | 511 | 1.63e-22 | 99.8 |
| Msa1407940 | AT5G10490.3 | 35.714 | 224 | 104 | 10 | 137 | 341 | 307 | 509 | 1.84e-22 | 99.4 |
| Msa1407940 | AT1G58200.2 | 41.935 | 155 | 64 | 6 | 151 | 299 | 324 | 458 | 2.11e-19 | 90.5 |
| Msa1407940 | AT1G58200.1 | 41.935 | 155 | 64 | 6 | 151 | 299 | 324 | 458 | 2.11e-19 | 90.5 |
Find 106 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGATTAGGAATATAATT+TGG | 0.150146 | tig0023338:-8506 | None:intergenic |
| AAGTAGATACAAACCTTAAT+TGG | 0.176033 | tig0023338:-8317 | None:intergenic |
| GCTCTTTGGGAATCAGAATT+TGG | 0.211636 | tig0023338:-11982 | None:intergenic |
| TTGTCGGCAAACTTGTTATT+AGG | 0.214780 | tig0023338:-8557 | None:intergenic |
| CGATATTATTTATAGGGTTT+TGG | 0.227081 | tig0023338:+7498 | Msa1407940:intron |
| AAGCAATCCTTTCGGATCTT+TGG | 0.245579 | tig0023338:+11800 | Msa1407940:CDS |
| CAATGATATTAACATAATTA+AGG | 0.257707 | tig0023338:+8640 | Msa1407940:CDS |
| GTTCTTCCAATTGCAGATAT+TGG | 0.259661 | tig0023338:+9495 | Msa1407940:intron |
| TAAAGTGGTAAGGGTATAAA+TGG | 0.259968 | tig0023338:-12504 | None:intergenic |
| TTTGGATGTGATTGGCTAAC+TGG | 0.302592 | tig0023338:-11861 | None:intergenic |
| TGTGATTAGGAATATAATTT+GGG | 0.328852 | tig0023338:-8505 | None:intergenic |
| AGTAGATACAAACCTTAATT+GGG | 0.329729 | tig0023338:-8316 | None:intergenic |
| GTGTGTTGATTATGTATATT+AGG | 0.333409 | tig0023338:+12231 | Msa1407940:three_prime_UTR |
| CGATCAGCAAATTTGTGATT+AGG | 0.339725 | tig0023338:-8518 | None:intergenic |
| AGTTTCAGATACAGCTCTTT+GGG | 0.348030 | tig0023338:-11995 | None:intergenic |
| TGAGTAATCCGACTAAGATT+TGG | 0.361136 | tig0023338:+8585 | Msa1407940:CDS |
| CTACAGGTTCATCGACTGTT+TGG | 0.368813 | tig0023338:-11879 | None:intergenic |
| CCTGTTACTTCCCATGAGTT+TGG | 0.379444 | tig0023338:+12021 | Msa1407940:CDS |
| AACTTAGCATCCATAGCTTA+TGG | 0.381217 | tig0023338:-12188 | None:intergenic |
| AAGTTTCAGATACAGCTCTT+TGG | 0.382088 | tig0023338:-11996 | None:intergenic |
| TTACTTCCCATGAGTTTGGC+AGG | 0.385891 | tig0023338:+12025 | Msa1407940:CDS |
| CATCCATAGCTTATGGCATA+TGG | 0.391747 | tig0023338:-12181 | None:intergenic |
| ACTCCGTCATAAGGTTTGTT+TGG | 0.400020 | tig0023338:+12333 | Msa1407940:three_prime_UTR |
| CCAAACTCATGGGAAGTAAC+AGG | 0.412769 | tig0023338:-12021 | None:intergenic |
| ATCAAACCTGGAAAACAAAC+TGG | 0.415504 | tig0023338:+8838 | Msa1407940:CDS |
| GGTTAGACTGTTCGAATCTC+AGG | 0.417102 | tig0023338:+7550 | Msa1407940:five_prime_UTR |
| TTATAAGCTCAAACGCTACT+TGG | 0.417329 | tig0023338:-12458 | None:intergenic |
| ATTTGAAGCTTTCAGCATAC+AGG | 0.418222 | tig0023338:-9521 | None:intergenic |
| CAGCCTAACTTTGATTAAAA+CGG | 0.420195 | tig0023338:+12290 | Msa1407940:three_prime_UTR |
| TTCTTCCACCCCATCGGGAC+TGG | 0.421238 | tig0023338:-7717 | None:intergenic |
| ATTTGGCTTGGACTTATCCT+TGG | 0.430781 | tig0023338:-11965 | None:intergenic |
| CGCTGTTCTGTTAAAACGAA+AGG | 0.436211 | tig0023338:+7281 | Msa1407940:five_prime_UTR |
| GGATGGCACGGATGGAATAC+TGG | 0.437531 | tig0023338:+8271 | Msa1407940:CDS |
| GAAAAGCTTGTACCTGAGAT+TGG | 0.442125 | tig0023338:-7325 | None:intergenic |
| AAGCTAGAAGCTCATTTATG+TGG | 0.449995 | tig0023338:-12360 | None:intergenic |
| TTGAGGGACACTCCGTCATA+AGG | 0.461371 | tig0023338:+12324 | Msa1407940:three_prime_UTR |
| TTGACTTCTTCCACCCCATC+GGG | 0.463916 | tig0023338:-7722 | None:intergenic |
| TTGGGAATCAGAATTTGGCT+TGG | 0.467858 | tig0023338:-11977 | None:intergenic |
| AGGATACCAATATCTGCAAT+TGG | 0.469636 | tig0023338:-9501 | None:intergenic |
| CGGATCTTTGGAGTGTTGGT+AGG | 0.480030 | tig0023338:+11812 | Msa1407940:CDS |
| ATCGACTGTTTGGATGTGAT+TGG | 0.480740 | tig0023338:-11869 | None:intergenic |
| TTCAACATTGTCCTCTCCGT+TGG | 0.481717 | tig0023338:-7954 | None:intergenic |
| AAAACAGGAAGCAATCCTTT+CGG | 0.487968 | tig0023338:+11792 | Msa1407940:intron |
| TCTTGGAGCTGATATGCGTC+AGG | 0.492178 | tig0023338:+8765 | Msa1407940:CDS |
| CGCAAATTCCAAATCTTAGT+CGG | 0.493963 | tig0023338:-8593 | None:intergenic |
| ATAATTTGGGTCTCTAATGA+TGG | 0.497402 | tig0023338:-8492 | None:intergenic |
| TGTTAATATCATTGAAGCTA+CGG | 0.498736 | tig0023338:-8631 | None:intergenic |
| ATCGAATCGAATCCAATCTC+AGG | 0.500102 | tig0023338:+7313 | Msa1407940:five_prime_UTR |
| CTTTCGGATCTTTGGAGTGT+TGG | 0.501184 | tig0023338:+11808 | Msa1407940:CDS |
| CTATTAGGACCAGTCCCGAT+GGG | 0.502344 | tig0023338:+7708 | Msa1407940:intron |
| TACTTCCCATGAGTTTGGCA+GGG | 0.509947 | tig0023338:+12026 | Msa1407940:CDS |
| ACGAGGATTATAGTCATAGT+TGG | 0.512382 | tig0023338:-8188 | None:intergenic |
| AGAAACCATAAAATCTTTGA+AGG | 0.514471 | tig0023338:-12152 | None:intergenic |
| ATATTAGGCAGTTCTTGAGT+TGG | 0.517840 | tig0023338:+12246 | Msa1407940:three_prime_UTR |
| GACTCGTGCATGCACTTCCT+AGG | 0.519338 | tig0023338:+7999 | Msa1407940:CDS |
| CGGATTACTCACAACATTGT+CGG | 0.525746 | tig0023338:-8573 | None:intergenic |
| GAAAGAGCAACACTGGACTT+AGG | 0.532333 | tig0023338:-7806 | None:intergenic |
| TTATCCTTGGAGTTTACACC+AGG | 0.532949 | tig0023338:-11952 | None:intergenic |
| ACTTCCCATGAGTTTGGCAG+GGG | 0.533366 | tig0023338:+12027 | Msa1407940:CDS |
| TTCGACGCTGTTAAAACGAA+AGG | 0.539678 | tig0023338:+7521 | Msa1407940:five_prime_UTR |
| GAAACATTGGATGGCACGGA+TGG | 0.541803 | tig0023338:+8263 | Msa1407940:CDS |
| CTAACTGGTCTCGATGATAC+CGG | 0.544580 | tig0023338:-11846 | None:intergenic |
| ATTGACTTCTTCCACCCCAT+CGG | 0.544947 | tig0023338:-7723 | None:intergenic |
| CCTTATAAATAAAAGAGCAC+TGG | 0.552369 | tig0023338:+7215 | Msa1407940:five_prime_UTR |
| TCTATTAGGACCAGTCCCGA+TGG | 0.554676 | tig0023338:+7707 | Msa1407940:intron |
| ACGATAAGAAAGAGCAACAC+TGG | 0.557935 | tig0023338:-7813 | None:intergenic |
| TGCGGCACTCGTCATTCTTG+AGG | 0.567763 | tig0023338:+8046 | Msa1407940:CDS |
| CGCACATATACGACAGGGCA+TGG | 0.567981 | tig0023338:-8027 | None:intergenic |
| AAAGGTTAGAGAATTTCGCT+AGG | 0.568244 | tig0023338:+7245 | Msa1407940:five_prime_UTR |
| AGAAGAAACATTGGATGGCA+CGG | 0.569193 | tig0023338:+8259 | Msa1407940:CDS |
| TTGGAAGAAGAAACATTGGA+TGG | 0.570498 | tig0023338:+8254 | Msa1407940:CDS |
| CATCCATATGCCATAAGCTA+TGG | 0.570622 | tig0023338:+12178 | Msa1407940:three_prime_UTR |
| GAGTGCCGCACATATACGAC+AGG | 0.573241 | tig0023338:-8033 | None:intergenic |
| TAGGACCAGTCCCGATGGGG+TGG | 0.573573 | tig0023338:+7712 | Msa1407940:intron |
| GGCATGTTCTTGGAATTGCT+AGG | 0.575593 | tig0023338:+7774 | Msa1407940:CDS |
| AAGGTTAGAGAATTTCGCTA+GGG | 0.590233 | tig0023338:+7246 | Msa1407940:five_prime_UTR |
| TGAGGAGTACAACAGTGTTA+CGG | 0.593759 | tig0023338:+9546 | Msa1407940:CDS |
| AAGAGCACTGGTAAAACGAA+AGG | 0.593867 | tig0023338:+7227 | Msa1407940:five_prime_UTR |
| TCTTCAAGTGGAGCAGCAGA+CGG | 0.594559 | tig0023338:+8801 | Msa1407940:CDS |
| CTTCCCATGAGTTTGGCAGG+GGG | 0.594615 | tig0023338:+12028 | Msa1407940:CDS |
| TTGGTAGGTATCATCGAGAC+CGG | 0.596668 | tig0023338:+11827 | Msa1407940:CDS |
| ACTATGACTATAATCCTCGT+TGG | 0.598254 | tig0023338:+8191 | Msa1407940:CDS |
| AAAGCAAGAAGAGAAATCCT+TGG | 0.600748 | tig0023338:+12074 | Msa1407940:CDS |
| GTAGATACAAACCTTAATTG+GGG | 0.600824 | tig0023338:-8315 | None:intergenic |
| GCTGAAAGCTTCAAATGATG+AGG | 0.602476 | tig0023338:+9528 | Msa1407940:CDS |
| TGTTAAAACGAAAGGTTGAG+TGG | 0.607094 | tig0023338:+7529 | Msa1407940:five_prime_UTR |
| ATCCTTGGAGTTTACACCAG+GGG | 0.609856 | tig0023338:-11950 | None:intergenic |
| TTCCCATGAGTTTGGCAGGG+GGG | 0.610554 | tig0023338:+12029 | Msa1407940:CDS |
| ATACATAATCAACACACAGA+AGG | 0.615135 | tig0023338:-12225 | None:intergenic |
| GACAGGGCATGGAGTAACCT+AGG | 0.618684 | tig0023338:-8016 | None:intergenic |
| CATAGCTTATGGCATATGGA+TGG | 0.622613 | tig0023338:-12177 | None:intergenic |
| TCCTTGGAGTTTACACCAGG+GGG | 0.622769 | tig0023338:-11949 | None:intergenic |
| ACCTGGAAAACAAACTGGCA+AGG | 0.625858 | tig0023338:+8843 | Msa1407940:CDS |
| GCAACACTGGACTTAGGTCG+AGG | 0.628117 | tig0023338:-7800 | None:intergenic |
| GGATTATAGTCATAGTTGGA+CGG | 0.632833 | tig0023338:-8184 | None:intergenic |
| TGTGATCAACCCAGATATGG+AGG | 0.636045 | tig0023338:+7913 | Msa1407940:intron |
| TCACAAATTTGCTGATCGTG+AGG | 0.638391 | tig0023338:+8523 | Msa1407940:CDS |
| ATTTACGTACTTCTGTCCAA+CGG | 0.646066 | tig0023338:+7938 | Msa1407940:CDS |
| TTACCAAACAAACCTTATGA+CGG | 0.649611 | tig0023338:-12336 | None:intergenic |
| CGTACTTCTGTCCAACGGAG+AGG | 0.649648 | tig0023338:+7943 | Msa1407940:CDS |
| CATGCCCTGTCGTATATGTG+CGG | 0.654625 | tig0023338:+8028 | Msa1407940:CDS |
| TATTAGGACCAGTCCCGATG+GGG | 0.657404 | tig0023338:+7709 | Msa1407940:intron |
| CAACACTCCAAAGATCCGAA+AGG | 0.668695 | tig0023338:-11807 | None:intergenic |
| GACAGTATATCAAAACACCA+AGG | 0.702428 | tig0023338:-12091 | None:intergenic |
| TATCCTTGGAGTTTACACCA+GGG | 0.721611 | tig0023338:-11951 | None:intergenic |
| AGTGCCGCACATATACGACA+GGG | 0.776734 | tig0023338:-8032 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATTAACTTTTACATATA+AGG | + | tig0023338:8340-8359 | Msa1407940:intron | 10.0% |
| !! | TAAATAAAAAGCTAATAAAT+TGG | - | tig0023338:9695-9714 | None:intergenic | 10.0% |
| !!! | AAAGTTTTTTTTTTTTTTGA+AGG | + | tig0023338:10021-10040 | Msa1407940:intron | 10.0% |
| !!! | TGTTTCTATTATTATAATTT+GGG | - | tig0023338:10417-10436 | None:intergenic | 10.0% |
| !!! | TGATTTTATACATAATAATT+GGG | - | tig0023338:11661-11680 | None:intergenic | 10.0% |
| !! | ATCTTTCGATATTATTTATA+GGG | + | tig0023338:7492-7511 | Msa1407940:intron | 15.0% |
| !! | TTATGCATTTAAAAACAAAT+AGG | - | tig0023338:7630-7649 | None:intergenic | 15.0% |
| !! | ATTGAGTAATTTATTTAGAA+TGG | - | tig0023338:8080-8099 | None:intergenic | 15.0% |
| !! | CAATGATATTAACATAATTA+AGG | + | tig0023338:8640-8659 | Msa1407940:CDS | 15.0% |
| !!! | GTGTTTCTATTATTATAATT+TGG | - | tig0023338:10418-10437 | None:intergenic | 15.0% |
| !! | TAAATAAGAAGATAGAAATT+AGG | - | tig0023338:10815-10834 | None:intergenic | 15.0% |
| !!! | TTTCTATCTTCTTATTTATT+TGG | + | tig0023338:10817-10836 | Msa1407940:intron | 15.0% |
| !!! | TTCTATCTTCTTATTTATTT+GGG | + | tig0023338:10818-10837 | Msa1407940:intron | 15.0% |
| !!! | AAATTGATGAATGAATTTTT+CGG | + | tig0023338:11098-11117 | Msa1407940:intron | 15.0% |
| !!! | CTGATTTTATACATAATAAT+TGG | - | tig0023338:11662-11681 | None:intergenic | 15.0% |
| !! | TTATGCATTGAAAACTAAAT+AGG | - | tig0023338:7395-7414 | None:intergenic | 20.0% |
| !! | GATCTTTCGATATTATTTAT+AGG | + | tig0023338:7491-7510 | Msa1407940:intron | 20.0% |
| !!! | TCTTTTTGAATCTTTCTATT+AGG | + | tig0023338:7693-7712 | Msa1407940:intron | 20.0% |
| !!! | TATTTTATGTCTTTTTGCTT+TGG | + | tig0023338:7752-7771 | Msa1407940:CDS | 20.0% |
| !!! | ATTTTATGTCTTTTTGCTTT+GGG | + | tig0023338:7753-7772 | Msa1407940:CDS | 20.0% |
| !! | TGTGATTAGGAATATAATTT+GGG | - | tig0023338:8508-8527 | None:intergenic | 20.0% |
| !! | TTGTGATTAGGAATATAATT+TGG | - | tig0023338:8509-8528 | None:intergenic | 20.0% |
| !!! | TCACTAAACTTAGTTTTTAA+AGG | - | tig0023338:9011-9030 | None:intergenic | 20.0% |
| !!! | ATTAATGCACCATATTTTAT+GGG | + | tig0023338:9646-9665 | Msa1407940:intron | 20.0% |
| !!! | TAATAAATTGGCTCATTAAT+AGG | - | tig0023338:9683-9702 | None:intergenic | 20.0% |
| !! | ATTATGATGAATCTTACAAA+AGG | - | tig0023338:9850-9869 | None:intergenic | 20.0% |
| !!! | GTTGTTTTTTTACTTTGAAT+TGG | + | tig0023338:9877-9896 | Msa1407940:intron | 20.0% |
| !!! | TTTTATGAAAGTGTACTTAA+TGG | - | tig0023338:9963-9982 | None:intergenic | 20.0% |
| !!! | CCTTTTTTTTTTTTTGTGAA+GGG | - | tig0023338:10159-10178 | None:intergenic | 20.0% |
| !! | AGTAGAATAAAATGTATTAG+AGG | + | tig0023338:10265-10284 | Msa1407940:intron | 20.0% |
| !! | AAAGACTCATTAATAAGATT+TGG | + | tig0023338:10326-10345 | Msa1407940:intron | 20.0% |
| !!! | ATTAATGCACCATATTTTAT+GGG | - | tig0023338:9646-9665 | None:intergenic | 20.0% |
| !!! | ATTGTTTTACATGATTCTTA+TGG | + | tig0023338:10523-10542 | Msa1407940:intron | 20.0% |
| !! | ATACCCTTAGATTTAATTAA+TGG | + | tig0023338:10895-10914 | Msa1407940:intron | 20.0% |
| !! | CAACCATTAATTAAATCTAA+GGG | - | tig0023338:10901-10920 | None:intergenic | 20.0% |
| !! | TCAACCATTAATTAAATCTA+AGG | - | tig0023338:10902-10921 | None:intergenic | 20.0% |
| !!! | TTAAGTTGCTTTTTGTTTTT+GGG | + | tig0023338:11150-11169 | Msa1407940:intron | 20.0% |
| !! | AATATGGAATTACATATTCA+TGG | - | tig0023338:11255-11274 | None:intergenic | 20.0% |
| !! | TTGGTTAAAATAATCTATCA+TGG | + | tig0023338:11323-11342 | Msa1407940:intron | 20.0% |
| !! | ATAACGTTGGATTTAATTAA+AGG | - | tig0023338:11517-11536 | None:intergenic | 20.0% |
| !! | TATGTATAAAATCAGTGTTA+TGG | + | tig0023338:11667-11686 | Msa1407940:intron | 20.0% |
| !!! | AGCAAAATTTTCATCATTTT+TGG | - | tig0023338:11914-11933 | None:intergenic | 20.0% |
| !!! | AAAAATGATGAAAATTTTGC+TGG | + | tig0023338:11913-11932 | Msa1407940:CDS | 20.0% |
| !!! | TGATTAAAACGGTTTATTTT+TGG | + | tig0023338:12301-12320 | Msa1407940:three_prime_UTR | 20.0% |
| !! | CGATATTATTTATAGGGTTT+TGG | + | tig0023338:7498-7517 | Msa1407940:intron | 25.0% |
| ! | AAACAATATGTAATCATGTG+CGG | - | tig0023338:7590-7609 | None:intergenic | 25.0% |
| ! | TCAAAAAGAAAATTCAATCC+AGG | - | tig0023338:7682-7701 | None:intergenic | 25.0% |
| !!! | GTTTTTCAGACAAATTAGAA+TGG | - | tig0023338:7851-7870 | None:intergenic | 25.0% |
| ! | TCTTCTTCCAAAAATATCAA+CGG | - | tig0023338:8245-8264 | None:intergenic | 25.0% |
| !!! | ATTTTTGGAAGAAGAAACAT+TGG | + | tig0023338:8250-8269 | Msa1407940:CDS | 25.0% |
| ! | AGTAGATACAAACCTTAATT+GGG | - | tig0023338:8319-8338 | None:intergenic | 25.0% |
| ! | AAGTAGATACAAACCTTAAT+TGG | - | tig0023338:8320-8339 | None:intergenic | 25.0% |
| !! | ATTTTGCCATTGAATATTGA+TGG | + | tig0023338:8385-8404 | Msa1407940:intron | 25.0% |
| ! | TATGAATACAACGTGAAAAA+AGG | - | tig0023338:8430-8449 | None:intergenic | 25.0% |
| ! | TGTTAATATCATTGAAGCTA+CGG | - | tig0023338:8634-8653 | None:intergenic | 25.0% |
| ! | TCTACATGAACAAAATTGAA+TGG | - | tig0023338:8744-8763 | None:intergenic | 25.0% |
| !! | TTTTGCTAAATATCTTCAAG+TGG | + | tig0023338:8789-8808 | Msa1407940:CDS | 25.0% |
| !!! | TTTTTGAAATTCATCAAACC+TGG | + | tig0023338:8826-8845 | Msa1407940:CDS | 25.0% |
| ! | GAAGAACTGTTAATAAGATA+TGG | - | tig0023338:9482-9501 | None:intergenic | 25.0% |
| !! | GATTAATGCACCATATTTTA+TGG | + | tig0023338:9645-9664 | Msa1407940:intron | 25.0% |
| !!! | ATTTTTTCTCTCTTTCTGAA+AGG | + | tig0023338:9766-9785 | Msa1407940:intron | 25.0% |
| ! | TAATAACCAAATTGGAATCA+AGG | + | tig0023338:9817-9836 | Msa1407940:intron | 25.0% |
| ! | AAAAAACTTTGCAGTTGTAT+TGG | - | tig0023338:10011-10030 | None:intergenic | 25.0% |
| ! | CCCTTCACAAAAAAAAAAAA+AGG | + | tig0023338:10156-10175 | Msa1407940:intron | 25.0% |
| !!! | GCCTTTTTTTTTTTTTGTGA+AGG | - | tig0023338:10160-10179 | None:intergenic | 25.0% |
| !! | GATTAATGCACCATATTTTA+TGG | - | tig0023338:9645-9664 | None:intergenic | 25.0% |
| ! | AAATTAGTGATAGATATCAG+TGG | - | tig0023338:10455-10474 | None:intergenic | 25.0% |
| ! | TGATTGTTATGTAATTACGT+AGG | - | tig0023338:10735-10754 | None:intergenic | 25.0% |
| ! | TTGTCTATTTACATCTGTAA+AGG | - | tig0023338:10784-10803 | None:intergenic | 25.0% |
| !! | TATCTTCTTATTTATTTGGG+TGG | + | tig0023338:10821-10840 | Msa1407940:intron | 25.0% |
| !! | TAAGTAGTCATTGATAACAT+GGG | - | tig0023338:10990-11009 | None:intergenic | 25.0% |
| !!! | GTTAAGTTGCTTTTTGTTTT+TGG | + | tig0023338:11149-11168 | Msa1407940:intron | 25.0% |
| !!! | TAAGTTGCTTTTTGTTTTTG+GGG | + | tig0023338:11151-11170 | Msa1407940:intron | 25.0% |
| !! | TAAAAGGCACAACTAAAATA+TGG | - | tig0023338:11271-11290 | None:intergenic | 25.0% |
| ! | AGGCTTCAAGATTTAATAAA+AGG | - | tig0023338:11287-11306 | None:intergenic | 25.0% |
| ! | GGACATTAATAAAATAACGT+TGG | - | tig0023338:11530-11549 | None:intergenic | 25.0% |
| !!! | TTATTTTATTAATGTCCCAC+CGG | + | tig0023338:11533-11552 | Msa1407940:intron | 25.0% |
| !!! | CAAATAAATGATGGATTCTA+CGG | - | tig0023338:11582-11601 | None:intergenic | 25.0% |
| ! | TCAAGATGACAAATAAATGA+TGG | - | tig0023338:11591-11610 | None:intergenic | 25.0% |
| ! | TATTTGTCATCTTGATTTCT+TGG | + | tig0023338:11596-11615 | Msa1407940:intron | 25.0% |
| ! | ATTAGGCTGCATTATTTATT+AGG | - | tig0023338:11752-11771 | None:intergenic | 25.0% |
| ! | TAAATAATGCAGCCTAATTA+AGG | + | tig0023338:11754-11773 | Msa1407940:intron | 25.0% |
| ! | TGATTAACGTGTAATAAAAC+AGG | + | tig0023338:11777-11796 | Msa1407940:intron | 25.0% |
| !!! | AAGAACACAATTTTAAAAGC+AGG | - | tig0023338:12118-12137 | None:intergenic | 25.0% |
| !!! | CTTTTAAAATTGTGTTCTTC+TGG | + | tig0023338:12119-12138 | Msa1407940:three_prime_UTR | 25.0% |
| ! | AGAAACCATAAAATCTTTGA+AGG | - | tig0023338:12155-12174 | None:intergenic | 25.0% |
| !! | TTCAAAGATTTTATGGTTTC+TGG | + | tig0023338:12154-12173 | Msa1407940:three_prime_UTR | 25.0% |
| !!! | GTGTGTTGATTATGTATATT+AGG | + | tig0023338:12231-12250 | Msa1407940:three_prime_UTR | 25.0% |
| !!! | AAACCGTTTTAATCAAAGTT+AGG | - | tig0023338:12296-12315 | None:intergenic | 25.0% |
| !! | CCAGTGCTCTTTTATTTATA+AGG | - | tig0023338:7218-7237 | None:intergenic | 30.0% |
| ! | CCTTATAAATAAAAGAGCAC+TGG | + | tig0023338:7215-7234 | Msa1407940:five_prime_UTR | 30.0% |
| TTGACATTCGAATCAATACT+TGG | + | tig0023338:7426-7445 | Msa1407940:intron | 30.0% | |
| ! | ATCGAAAGATCGATTCAAAT+AGG | - | tig0023338:7482-7501 | None:intergenic | 30.0% |
| TTGACATTTGAATCAATACC+TGG | + | tig0023338:7661-7680 | Msa1407940:intron | 30.0% | |
| TCACAGTTATAAACTCAGAA+TGG | - | tig0023338:8117-8136 | None:intergenic | 30.0% | |
| AGATATCTTGATACGTATCT+GGG | - | tig0023338:8144-8163 | None:intergenic | 30.0% | |
| TAGATATCTTGATACGTATC+TGG | - | tig0023338:8145-8164 | None:intergenic | 30.0% | |
| ! | ATCTTTGCCGTTGATATTTT+TGG | + | tig0023338:8235-8254 | Msa1407940:CDS | 30.0% |
| ATTGGGGCAAAAAAATCATA+TGG | - | tig0023338:8302-8321 | None:intergenic | 30.0% | |
| !!! | TGATTTTTTTGCCCCAATTA+AGG | + | tig0023338:8304-8323 | Msa1407940:CDS | 30.0% |
| GTAGATACAAACCTTAATTG+GGG | - | tig0023338:8318-8337 | None:intergenic | 30.0% | |
| TCAAAGCCATCAATATTCAA+TGG | - | tig0023338:8394-8413 | None:intergenic | 30.0% | |
| ATAATTTGGGTCTCTAATGA+TGG | - | tig0023338:8495-8514 | None:intergenic | 30.0% | |
| ATAATTAAGGTGAGCAATGT+CGG | + | tig0023338:8653-8672 | Msa1407940:intron | 30.0% | |
| AAAACATAAACTGCATGAAC+AGG | - | tig0023338:8696-8715 | None:intergenic | 30.0% | |
| ! | GTTCATGCAGTTTATGTTTT+TGG | + | tig0023338:8696-8715 | Msa1407940:intron | 30.0% |
| ! | ATTTTGTTCATGTAGAGTCT+TGG | + | tig0023338:8748-8767 | Msa1407940:intron | 30.0% |
| AGAGTTAGTCAAATGATTGA+GGG | + | tig0023338:8902-8921 | Msa1407940:intron | 30.0% | |
| !! | CTTTAAAACCTATGGTGTAT+GGG | + | tig0023338:8963-8982 | Msa1407940:intron | 30.0% |
| ! | TTTAAAACCTATGGTGTATG+GGG | + | tig0023338:8964-8983 | Msa1407940:intron | 30.0% |
| TAATCCTATCTTATGTTGTG+TGG | - | tig0023338:9046-9065 | None:intergenic | 30.0% | |
| ACACAACATAAGATAGGATT+AGG | + | tig0023338:9045-9064 | Msa1407940:intron | 30.0% | |
| ACATAAGATAGGATTAGGAA+TGG | + | tig0023338:9050-9069 | Msa1407940:intron | 30.0% | |
| GGATTCATTAGACAAAAAGA+CGG | + | tig0023338:9071-9090 | Msa1407940:intron | 30.0% | |
| GATTCATTAGACAAAAAGAC+GGG | + | tig0023338:9072-9091 | Msa1407940:intron | 30.0% | |
| GAATCTCTCTTTATGTGATT+TGG | + | tig0023338:9121-9140 | Msa1407940:intron | 30.0% | |
| !!! | AGAGAAGTGTTTTCAAATAG+CGG | + | tig0023338:9197-9216 | Msa1407940:intron | 30.0% |
| !!! | GACATTTTTTGTTTGATCCA+TGG | + | tig0023338:9387-9406 | Msa1407940:intron | 30.0% |
| !! | CAATAAAGCATTTTCCTACT+AGG | - | tig0023338:9429-9448 | None:intergenic | 30.0% |
| ! | CCAATTTGATTTAATGCCTT+GGG | - | tig0023338:9586-9605 | None:intergenic | 30.0% |
| ! | TCCAATTTGATTTAATGCCT+TGG | - | tig0023338:9587-9606 | None:intergenic | 30.0% |
| TTGGAGAAACCCATAAAATA+TGG | - | tig0023338:10345-10364 | None:intergenic | 30.0% | |
| ! | ATTGGCTCATTAATAGGATT+TGG | - | tig0023338:9677-9696 | None:intergenic | 30.0% |
| !! | AGAGAACGGTTTTTAAGAAA+AGG | - | tig0023338:9743-9762 | None:intergenic | 30.0% |
| AGAGAAAAAATGAGAGAGAA+CGG | - | tig0023338:9757-9776 | None:intergenic | 30.0% | |
| ATAATGCCTTGATTCCAATT+TGG | - | tig0023338:9826-9845 | None:intergenic | 30.0% | |
| AATGACAGTGTTCAAATTGA+CGG | + | tig0023338:9919-9938 | Msa1407940:intron | 30.0% | |
| TTGGAGAAACCCATAAAATA+TGG | + | tig0023338:10345-10364 | Msa1407940:intron | 30.0% | |
| TTACATGATTCTTATGGTGT+TGG | + | tig0023338:10529-10548 | Msa1407940:intron | 30.0% | |
| !! | TTAGAACTTGTGAAGTATTG+AGG | + | tig0023338:10565-10584 | Msa1407940:intron | 30.0% |
| AATAAAAAGACATACGATGC+TGG | + | tig0023338:10675-10694 | Msa1407940:intron | 30.0% | |
| ! | TATTTATTTGGGTGGATTCT+AGG | + | tig0023338:10829-10848 | Msa1407940:intron | 30.0% |
| ! | ATTTATTTGGGTGGATTCTA+GGG | + | tig0023338:10830-10849 | Msa1407940:intron | 30.0% |
| !!! | ATCTAAGGGTATTTTGTTCA+TGG | - | tig0023338:10887-10906 | None:intergenic | 30.0% |
| ! | GTAAGTAGTCATTGATAACA+TGG | - | tig0023338:10991-11010 | None:intergenic | 30.0% |
| !! | GAATCATTGGTATTGGTATT+TGG | + | tig0023338:11067-11086 | Msa1407940:intron | 30.0% |
| ! | TCTATTTTGTTCTTGTTCAG+CGG | + | tig0023338:11127-11146 | Msa1407940:intron | 30.0% |
| ! | TTTTATTATCTCCTTCACCA+TGG | + | tig0023338:11179-11198 | Msa1407940:intron | 30.0% |
| TTAAATCTTGAAGCCTATGT+TGG | + | tig0023338:11291-11310 | Msa1407940:intron | 30.0% | |
| !! | TTGTCACAATTATTTTGCAC+CGG | + | tig0023338:11374-11393 | Msa1407940:intron | 30.0% |
| CAACAAAAATCCAAACAAGA+TGG | - | tig0023338:11403-11422 | None:intergenic | 30.0% | |
| ! | TGTTTGGATTTTTGTTGAGT+TGG | + | tig0023338:11406-11425 | Msa1407940:intron | 30.0% |
| !!! | ACTCTTTTTTTACCACACAA+GGG | - | tig0023338:11634-11653 | None:intergenic | 30.0% |
| !!! | AACTCTTTTTTTACCACACA+AGG | - | tig0023338:11635-11654 | None:intergenic | 30.0% |
| ACACGTTAATCACCTTAATT+AGG | - | tig0023338:11769-11788 | None:intergenic | 30.0% | |
| ! | CTTTGCCTTCAAAGATTTTA+TGG | + | tig0023338:12147-12166 | Msa1407940:three_prime_UTR | 30.0% |
| ATACATAATCAACACACAGA+AGG | - | tig0023338:12228-12247 | None:intergenic | 30.0% | |
| CAGCCTAACTTTGATTAAAA+CGG | + | tig0023338:12290-12309 | Msa1407940:three_prime_UTR | 30.0% | |
| !!! | AAACGGTTTATTTTTGGTTG+AGG | + | tig0023338:12307-12326 | Msa1407940:three_prime_UTR | 30.0% |
| !!! | AACGGTTTATTTTTGGTTGA+GGG | + | tig0023338:12308-12327 | Msa1407940:three_prime_UTR | 30.0% |
| TTACCAAACAAACCTTATGA+CGG | - | tig0023338:12339-12358 | None:intergenic | 30.0% | |
| ! | TAAAGTGGTAAGGGTATAAA+TGG | - | tig0023338:12507-12526 | None:intergenic | 30.0% |
| !!! | GGTTTTAGTTAAAGTGGTAA+GGG | - | tig0023338:12516-12535 | None:intergenic | 30.0% |
| AAAGGTTAGAGAATTTCGCT+AGG | + | tig0023338:7245-7264 | Msa1407940:five_prime_UTR | 35.0% | |
| AAGGTTAGAGAATTTCGCTA+GGG | + | tig0023338:7246-7265 | Msa1407940:five_prime_UTR | 35.0% | |
| TGCAACAATTTGTAATCGTG+TGG | - | tig0023338:7352-7371 | None:intergenic | 35.0% | |
| TGTTAAAACGAAAGGTTGAG+TGG | + | tig0023338:7529-7548 | Msa1407940:five_prime_UTR | 35.0% | |
| !! | GCTCTTTCTTATCGTTTTTG+AGG | + | tig0023338:7821-7840 | Msa1407940:CDS | 35.0% |
| CGTAAATATCCTCCATATCT+GGG | - | tig0023338:7925-7944 | None:intergenic | 35.0% | |
| ACGTAAATATCCTCCATATC+TGG | - | tig0023338:7926-7945 | None:intergenic | 35.0% | |
| ATTTACGTACTTCTGTCCAA+CGG | + | tig0023338:7938-7957 | Msa1407940:CDS | 35.0% | |
| GGATTATAGTCATAGTTGGA+CGG | - | tig0023338:8187-8206 | None:intergenic | 35.0% | |
| ACGAGGATTATAGTCATAGT+TGG | - | tig0023338:8191-8210 | None:intergenic | 35.0% | |
| ACTATGACTATAATCCTCGT+TGG | + | tig0023338:8191-8210 | Msa1407940:CDS | 35.0% | |
| TTGGAAGAAGAAACATTGGA+TGG | + | tig0023338:8254-8273 | Msa1407940:CDS | 35.0% | |
| ! | TTCTCCAGAAACATTTTCGT+TGG | + | tig0023338:8459-8478 | Msa1407940:intron | 35.0% |
| ! | TCTCCAGAAACATTTTCGTT+GGG | + | tig0023338:8460-8479 | Msa1407940:intron | 35.0% |
| CGATCAGCAAATTTGTGATT+AGG | - | tig0023338:8521-8540 | None:intergenic | 35.0% | |
| !! | TTGTCGGCAAACTTGTTATT+AGG | - | tig0023338:8560-8579 | None:intergenic | 35.0% |
| TGAGTAATCCGACTAAGATT+TGG | + | tig0023338:8585-8604 | Msa1407940:CDS | 35.0% | |
| CGCAAATTCCAAATCTTAGT+CGG | - | tig0023338:8596-8615 | None:intergenic | 35.0% | |
| ATCAAACCTGGAAAACAAAC+TGG | + | tig0023338:8838-8857 | Msa1407940:CDS | 35.0% | |
| CAGAGTTAGTCAAATGATTG+AGG | + | tig0023338:8901-8920 | Msa1407940:intron | 35.0% | |
| TGTGGTAAAGTTTCCCTTTA+TGG | - | tig0023338:8934-8953 | None:intergenic | 35.0% | |
| GAAACTTTACCACAATCCTA+TGG | + | tig0023338:8940-8959 | Msa1407940:intron | 35.0% | |
| !!! | GTTTTAAAGCCATAGGATTG+TGG | - | tig0023338:8952-8971 | None:intergenic | 35.0% |
| !! | TCCTATGGCTTTAAAACCTA+TGG | + | tig0023338:8955-8974 | Msa1407940:intron | 35.0% |
| !!! | ACCATAGGTTTTAAAGCCAT+AGG | - | tig0023338:8959-8978 | None:intergenic | 35.0% |
| !! | GCTTTAAAACCTATGGTGTA+TGG | + | tig0023338:8962-8981 | Msa1407940:intron | 35.0% |
| ! | TTTTCAAATAGCGGTTACAG+CGG | + | tig0023338:9206-9225 | Msa1407940:intron | 35.0% |
| GTTCTTCCAATTGCAGATAT+TGG | + | tig0023338:9495-9514 | Msa1407940:intron | 35.0% | |
| AGGATACCAATATCTGCAAT+TGG | - | tig0023338:9504-9523 | None:intergenic | 35.0% | |
| ! | ATTTGAAGCTTTCAGCATAC+AGG | - | tig0023338:9524-9543 | None:intergenic | 35.0% |
| ! | CCCAAGGCATTAAATCAAAT+TGG | + | tig0023338:9583-9602 | Msa1407940:intron | 35.0% |
| CCAATTTGGTTATTACTTGC+AGG | - | tig0023338:9812-9831 | None:intergenic | 35.0% | |
| CCTGCAAGTAATAACCAAAT+TGG | + | tig0023338:9809-9828 | Msa1407940:intron | 35.0% | |
| TACTTAATGGAGCCAATGTT+TGG | - | tig0023338:9950-9969 | None:intergenic | 35.0% | |
| !! | ATTTCGTAATTTGCTGTGCT+TGG | + | tig0023338:10471-10490 | Msa1407940:intron | 35.0% |
| AAGGCAAAGATACCAATTTG+TGG | - | tig0023338:10765-10784 | None:intergenic | 35.0% | |
| ATCGGTAACTTATCCATTGA+CGG | + | tig0023338:11042-11061 | Msa1407940:intron | 35.0% | |
| !!! | TTGCTTTTTGTTTTTGGGGA+AGG | + | tig0023338:11155-11174 | Msa1407940:intron | 35.0% |
| TTGTACATCTCTCTTTGGTT+GGG | - | tig0023338:11225-11244 | None:intergenic | 35.0% | |
| ATCTGTTGTACATCTCTCTT+TGG | - | tig0023338:11230-11249 | None:intergenic | 35.0% | |
| AAAACAGGAAGCAATCCTTT+CGG | + | tig0023338:11792-11811 | Msa1407940:intron | 35.0% | |
| AGTTTCAGATACAGCTCTTT+GGG | - | tig0023338:11998-12017 | None:intergenic | 35.0% | |
| AAGTTTCAGATACAGCTCTT+TGG | - | tig0023338:11999-12018 | None:intergenic | 35.0% | |
| AAAGCAAGAAGAGAAATCCT+TGG | + | tig0023338:12074-12093 | Msa1407940:CDS | 35.0% | |
| GACAGTATATCAAAACACCA+AGG | - | tig0023338:12094-12113 | None:intergenic | 35.0% | |
| AACTTAGCATCCATAGCTTA+TGG | - | tig0023338:12191-12210 | None:intergenic | 35.0% | |
| ATATTAGGCAGTTCTTGAGT+TGG | + | tig0023338:12246-12265 | Msa1407940:three_prime_UTR | 35.0% | |
| AAGCTAGAAGCTCATTTATG+TGG | - | tig0023338:12363-12382 | None:intergenic | 35.0% | |
| TTATAAGCTCAAACGCTACT+TGG | - | tig0023338:12461-12480 | None:intergenic | 35.0% | |
| !!! | GGGTTTTAGTTAAAGTGGTA+AGG | - | tig0023338:12517-12536 | None:intergenic | 35.0% |
| !! | AAGAGCACTGGTAAAACGAA+AGG | + | tig0023338:7227-7246 | Msa1407940:five_prime_UTR | 40.0% |
| CGCTGTTCTGTTAAAACGAA+AGG | + | tig0023338:7281-7300 | Msa1407940:five_prime_UTR | 40.0% | |
| ATCGAATCGAATCCAATCTC+AGG | + | tig0023338:7313-7332 | Msa1407940:five_prime_UTR | 40.0% | |
| GAAAAGCTTGTACCTGAGAT+TGG | - | tig0023338:7328-7347 | None:intergenic | 40.0% | |
| TTCGACGCTGTTAAAACGAA+AGG | + | tig0023338:7521-7540 | Msa1407940:five_prime_UTR | 40.0% | |
| !! | TTTTGCTTTGGGCATGTTCT+TGG | + | tig0023338:7764-7783 | Msa1407940:CDS | 40.0% |
| ACGATAAGAAAGAGCAACAC+TGG | - | tig0023338:7816-7835 | None:intergenic | 40.0% | |
| AACTGTGATCAACCCAGATA+TGG | + | tig0023338:7910-7929 | Msa1407940:intron | 40.0% | |
| AGAAGAAACATTGGATGGCA+CGG | + | tig0023338:8259-8278 | Msa1407940:CDS | 40.0% | |
| ! | CTCCAGAAACATTTTCGTTG+GGG | + | tig0023338:8461-8480 | Msa1407940:intron | 40.0% |
| ! | TCCAGAAACATTTTCGTTGG+GGG | + | tig0023338:8462-8481 | Msa1407940:intron | 40.0% |
| !! | TCACAAATTTGCTGATCGTG+AGG | + | tig0023338:8523-8542 | Msa1407940:CDS | 40.0% |
| CGGATTACTCACAACATTGT+CGG | - | tig0023338:8576-8595 | None:intergenic | 40.0% | |
| CTAACTCTGCTTGCATTTCA+TGG | - | tig0023338:8890-8909 | None:intergenic | 40.0% | |
| ! | ATTGAGGGCTTTGACCATAA+AGG | + | tig0023338:8917-8936 | Msa1407940:intron | 40.0% |
| ! | TTGAGGGCTTTGACCATAAA+GGG | + | tig0023338:8918-8937 | Msa1407940:intron | 40.0% |
| GTAGCCACACAACATAAGAT+AGG | + | tig0023338:9039-9058 | Msa1407940:intron | 40.0% | |
| ! | GACGCCTTTTGTGAAAAAGA+TGG | + | tig0023338:9096-9115 | Msa1407940:intron | 40.0% |
| ! | GCCTTTTGTGAAAAAGATGG+CGG | + | tig0023338:9099-9118 | Msa1407940:intron | 40.0% |
| !! | TCCGCCATCTTTTTCACAAA+AGG | - | tig0023338:9103-9122 | None:intergenic | 40.0% |
| CGATAGTCTTCTCAATGGTT+TGG | - | tig0023338:9163-9182 | None:intergenic | 40.0% | |
| CCAATCGATAGTCTTCTCAA+TGG | - | tig0023338:9168-9187 | None:intergenic | 40.0% | |
| CCATTGAGAAGACTATCGAT+TGG | + | tig0023338:9165-9184 | Msa1407940:intron | 40.0% | |
| GCTGAAAGCTTCAAATGATG+AGG | + | tig0023338:9528-9547 | Msa1407940:CDS | 40.0% | |
| ! | TGAGGAGTACAACAGTGTTA+CGG | + | tig0023338:9546-9565 | Msa1407940:CDS | 40.0% |
| GGTAAACTAATACACTCCCA+AGG | + | tig0023338:9567-9586 | Msa1407940:intron | 40.0% | |
| TTGACGGTAGAACCAAACAT+TGG | + | tig0023338:9935-9954 | Msa1407940:intron | 40.0% | |
| AATCAGCATCAGCCACAAAT+TGG | + | tig0023338:10750-10769 | Msa1407940:intron | 40.0% | |
| ! | GTATTTTGTTCATGGTCCAC+CGG | - | tig0023338:10879-10898 | None:intergenic | 40.0% |
| GATAACATGGGAAGAGATAG+AGG | - | tig0023338:10978-10997 | None:intergenic | 40.0% | |
| AAGCCAGAGTTGAATTGAAG+TGG | + | tig0023338:11012-11031 | Msa1407940:intron | 40.0% | |
| AATTGAAGTGGCCACTGTAT+CGG | + | tig0023338:11024-11043 | Msa1407940:intron | 40.0% | |
| TGGATAAGTTACCGATACAG+TGG | - | tig0023338:11038-11057 | None:intergenic | 40.0% | |
| GTTGTACATCTCTCTTTGGT+TGG | - | tig0023338:11226-11245 | None:intergenic | 40.0% | |
| AATCCAAACAAGATGGTTGC+CGG | - | tig0023338:11396-11415 | None:intergenic | 40.0% | |
| !! | AATGATGGATTCTACGGTGA+GGG | - | tig0023338:11576-11595 | None:intergenic | 40.0% |
| !! | AAATGATGGATTCTACGGTG+AGG | - | tig0023338:11577-11596 | None:intergenic | 40.0% |
| AAGCAATCCTTTCGGATCTT+TGG | + | tig0023338:11800-11819 | Msa1407940:CDS | 40.0% | |
| ! | TTTGGATGTGATTGGCTAAC+TGG | - | tig0023338:11864-11883 | None:intergenic | 40.0% |
| ATCGACTGTTTGGATGTGAT+TGG | - | tig0023338:11872-11891 | None:intergenic | 40.0% | |
| !!! | TTTTTGGAGTCAGATGCTAC+AGG | - | tig0023338:11898-11917 | None:intergenic | 40.0% |
| TATCCTTGGAGTTTACACCA+GGG | - | tig0023338:11954-11973 | None:intergenic | 40.0% | |
| TTATCCTTGGAGTTTACACC+AGG | - | tig0023338:11955-11974 | None:intergenic | 40.0% | |
| !! | ATTTGGCTTGGACTTATCCT+TGG | - | tig0023338:11968-11987 | None:intergenic | 40.0% |
| TTGGGAATCAGAATTTGGCT+TGG | - | tig0023338:11980-11999 | None:intergenic | 40.0% | |
| ! | GCTCTTTGGGAATCAGAATT+TGG | - | tig0023338:11985-12004 | None:intergenic | 40.0% |
| CATAGCTTATGGCATATGGA+TGG | - | tig0023338:12180-12199 | None:intergenic | 40.0% | |
| CATCCATATGCCATAAGCTA+TGG | + | tig0023338:12178-12197 | Msa1407940:three_prime_UTR | 40.0% | |
| CATCCATAGCTTATGGCATA+TGG | - | tig0023338:12184-12203 | None:intergenic | 40.0% | |
| ! | ACTCCGTCATAAGGTTTGTT+TGG | + | tig0023338:12333-12352 | Msa1407940:three_prime_UTR | 40.0% |
| ! | TTTCGCTAGGGTTTTGCGTT+TGG | + | tig0023338:7258-7277 | Msa1407940:five_prime_UTR | 45.0% |
| GGTTAGACTGTTCGAATCTC+AGG | + | tig0023338:7550-7569 | Msa1407940:five_prime_UTR | 45.0% | |
| ! | ATTGACTTCTTCCACCCCAT+CGG | - | tig0023338:7726-7745 | None:intergenic | 45.0% |
| GGCATGTTCTTGGAATTGCT+AGG | + | tig0023338:7774-7793 | Msa1407940:CDS | 45.0% | |
| GAAAGAGCAACACTGGACTT+AGG | - | tig0023338:7809-7828 | None:intergenic | 45.0% | |
| TGTGATCAACCCAGATATGG+AGG | + | tig0023338:7913-7932 | Msa1407940:intron | 45.0% | |
| TTCAACATTGTCCTCTCCGT+TGG | - | tig0023338:7957-7976 | None:intergenic | 45.0% | |
| CTAAAAAGAACGCTCCAACG+AGG | - | tig0023338:8208-8227 | None:intergenic | 45.0% | |
| ! | CCAGAAACATTTTCGTTGGG+GGG | + | tig0023338:8463-8482 | Msa1407940:intron | 45.0% |
| ! | CAGAAACATTTTCGTTGGGG+GGG | + | tig0023338:8464-8483 | Msa1407940:intron | 45.0% |
| ACCTGGAAAACAAACTGGCA+AGG | + | tig0023338:8843-8862 | Msa1407940:CDS | 45.0% | |
| !! | ACCTTGCCAGTTTGTTTTCC+AGG | - | tig0023338:8847-8866 | None:intergenic | 45.0% |
| AGCGTATCGCAAAACAACAG+CGG | - | tig0023338:9250-9269 | None:intergenic | 45.0% | |
| ! | TAGAGCAATGTTGTCGACTG+CGG | - | tig0023338:9350-9369 | None:intergenic | 45.0% |
| TAACCTGTGCAATCATGCAC+AGG | + | tig0023338:9613-9632 | Msa1407940:intron | 45.0% | |
| TATCCTGTGCATGATTGCAC+AGG | - | tig0023338:9619-9638 | None:intergenic | 45.0% | |
| GTGCAATCATGCACAGGATA+AGG | + | tig0023338:9619-9638 | Msa1407940:intron | 45.0% | |
| CTGTGCAATTGCACAGGATA+AGG | - | tig0023338:10384-10403 | None:intergenic | 45.0% | |
| CTTATCCTGTGCAATTGCAC+AGG | + | tig0023338:10382-10401 | Msa1407940:intron | 45.0% | |
| TCTAACCTGTGCAATTGCAC+AGG | - | tig0023338:10390-10409 | None:intergenic | 45.0% | |
| GTGCTTGGACTTCAGTTTGT+TGG | + | tig0023338:10486-10505 | Msa1407940:intron | 45.0% | |
| GGTTCAATTAAGTCCCTCAC+CGG | + | tig0023338:10857-10876 | Msa1407940:intron | 45.0% | |
| TGGCCACTTCAATTCAACTC+TGG | - | tig0023338:11018-11037 | None:intergenic | 45.0% | |
| TCCATTGACGGCAGAATCAT+TGG | + | tig0023338:11054-11073 | Msa1407940:intron | 45.0% | |
| ACCAATGATTCTGCCGTCAA+TGG | - | tig0023338:11058-11077 | None:intergenic | 45.0% | |
| GACGGCAGAATCATTGGTAT+TGG | + | tig0023338:11060-11079 | Msa1407940:intron | 45.0% | |
| CCAAAGACACACTCCAACAT+AGG | - | tig0023338:11307-11326 | None:intergenic | 45.0% | |
| CCTATGTTGGAGTGTGTCTT+TGG | + | tig0023338:11304-11323 | Msa1407940:intron | 45.0% | |
| TTATTAATGTCCCACCGGTG+AGG | + | tig0023338:11538-11557 | Msa1407940:intron | 45.0% | |
| TATTAATGTCCCACCGGTGA+GGG | + | tig0023338:11539-11558 | Msa1407940:intron | 45.0% | |
| GGTTCAATTAAGTCCCTCAC+CGG | - | tig0023338:10857-10876 | None:intergenic | 45.0% | |
| CAACACTCCAAAGATCCGAA+AGG | - | tig0023338:11810-11829 | None:intergenic | 45.0% | |
| !! | CTTTCGGATCTTTGGAGTGT+TGG | + | tig0023338:11808-11827 | Msa1407940:CDS | 45.0% |
| TTGGTAGGTATCATCGAGAC+CGG | + | tig0023338:11827-11846 | Msa1407940:CDS | 45.0% | |
| ! | CTAACTGGTCTCGATGATAC+CGG | - | tig0023338:11849-11868 | None:intergenic | 45.0% |
| ! | CTACAGGTTCATCGACTGTT+TGG | - | tig0023338:11882-11901 | None:intergenic | 45.0% |
| ATCCTTGGAGTTTACACCAG+GGG | - | tig0023338:11953-11972 | None:intergenic | 45.0% | |
| CCAAACTCATGGGAAGTAAC+AGG | - | tig0023338:12024-12043 | None:intergenic | 45.0% | |
| ! | CCTGTTACTTCCCATGAGTT+TGG | + | tig0023338:12021-12040 | Msa1407940:CDS | 45.0% |
| TTACTTCCCATGAGTTTGGC+AGG | + | tig0023338:12025-12044 | Msa1407940:CDS | 45.0% | |
| TACTTCCCATGAGTTTGGCA+GGG | + | tig0023338:12026-12045 | Msa1407940:CDS | 45.0% | |
| TCTATTAGGACCAGTCCCGA+TGG | + | tig0023338:7707-7726 | Msa1407940:intron | 50.0% | |
| CTATTAGGACCAGTCCCGAT+GGG | + | tig0023338:7708-7727 | Msa1407940:intron | 50.0% | |
| TATTAGGACCAGTCCCGATG+GGG | + | tig0023338:7709-7728 | Msa1407940:intron | 50.0% | |
| TTGACTTCTTCCACCCCATC+GGG | - | tig0023338:7725-7744 | None:intergenic | 50.0% | |
| CATGCCCTGTCGTATATGTG+CGG | + | tig0023338:8028-8047 | Msa1407940:CDS | 50.0% | |
| AGTGCCGCACATATACGACA+GGG | - | tig0023338:8035-8054 | None:intergenic | 50.0% | |
| GAAACATTGGATGGCACGGA+TGG | + | tig0023338:8263-8282 | Msa1407940:CDS | 50.0% | |
| CCCCCCAACGAAAATGTTTC+TGG | - | tig0023338:8466-8485 | None:intergenic | 50.0% | |
| TCTTGGAGCTGATATGCGTC+AGG | + | tig0023338:8765-8784 | Msa1407940:CDS | 50.0% | |
| TCTTCAAGTGGAGCAGCAGA+CGG | + | tig0023338:8801-8820 | Msa1407940:CDS | 50.0% | |
| CATTCAGCCCCATACACCAT+AGG | - | tig0023338:8974-8993 | None:intergenic | 50.0% | |
| TGTATGGGGCTGAATGTTGC+TGG | + | tig0023338:8978-8997 | Msa1407940:intron | 50.0% | |
| ! | GATTTGGTCCTGTGTGCTAG+AGG | + | tig0023338:9137-9156 | Msa1407940:intron | 50.0% |
| !! | TTTGGGTGGATTCTAGGGTG+AGG | + | tig0023338:10835-10854 | Msa1407940:intron | 50.0% |
| !! | TTGGGTGGATTCTAGGGTGA+GGG | + | tig0023338:10836-10855 | Msa1407940:intron | 50.0% |
| TCAATTAAGTCCCTCACCGG+TGG | + | tig0023338:10860-10879 | Msa1407940:intron | 50.0% | |
| ACATGGGAAGAGATAGAGGC+AGG | - | tig0023338:10974-10993 | None:intergenic | 50.0% | |
| CTCTCTTTGGTTGGGACTTG+AGG | - | tig0023338:11217-11236 | None:intergenic | 50.0% | |
| CAATTAAGTCCCTCACCGGT+GGG | - | tig0023338:10861-10880 | None:intergenic | 50.0% | |
| TCAATTAAGTCCCTCACCGG+TGG | - | tig0023338:10860-10879 | None:intergenic | 50.0% | |
| AACCTTCATGTGCCCTTGTG+TGG | + | tig0023338:11619-11638 | Msa1407940:intron | 50.0% | |
| ! | TACCACACAAGGGCACATGA+AGG | - | tig0023338:11624-11643 | None:intergenic | 50.0% |
| !! | CGGATCTTTGGAGTGTTGGT+AGG | + | tig0023338:11812-11831 | Msa1407940:CDS | 50.0% |
| TCCTTGGAGTTTACACCAGG+GGG | - | tig0023338:11952-11971 | None:intergenic | 50.0% | |
| ACTTCCCATGAGTTTGGCAG+GGG | + | tig0023338:12027-12046 | Msa1407940:CDS | 50.0% | |
| TTGAGGGACACTCCGTCATA+AGG | + | tig0023338:12324-12343 | Msa1407940:three_prime_UTR | 50.0% | |
| GCAACACTGGACTTAGGTCG+AGG | - | tig0023338:7803-7822 | None:intergenic | 55.0% | |
| CGTACTTCTGTCCAACGGAG+AGG | + | tig0023338:7943-7962 | Msa1407940:CDS | 55.0% | |
| GACTCGTGCATGCACTTCCT+AGG | + | tig0023338:7999-8018 | Msa1407940:CDS | 55.0% | |
| GACAGGGCATGGAGTAACCT+AGG | - | tig0023338:8019-8038 | None:intergenic | 55.0% | |
| CGCACATATACGACAGGGCA+TGG | - | tig0023338:8030-8049 | None:intergenic | 55.0% | |
| ! | GAGTGCCGCACATATACGAC+AGG | - | tig0023338:8036-8055 | None:intergenic | 55.0% |
| TGCGGCACTCGTCATTCTTG+AGG | + | tig0023338:8046-8065 | Msa1407940:CDS | 55.0% | |
| GGATGGCACGGATGGAATAC+TGG | + | tig0023338:8271-8290 | Msa1407940:CDS | 55.0% | |
| ! | TGGTTTGGCCTCTAGCACAC+AGG | - | tig0023338:9148-9167 | None:intergenic | 55.0% |
| TCGACTCAGCTCAGCCTAGT+AGG | + | tig0023338:9412-9431 | Msa1407940:intron | 55.0% | |
| TGTTCATGGTCCACCGGTGA+GGG | - | tig0023338:10873-10892 | None:intergenic | 55.0% | |
| TTGTTCATGGTCCACCGGTG+AGG | - | tig0023338:10874-10893 | None:intergenic | 55.0% | |
| TTTGGTTGGGACTTGAGGCG+CGG | - | tig0023338:11212-11231 | None:intergenic | 55.0% | |
| ! | GCACCGGCAACCATCTTGTT+TGG | + | tig0023338:11390-11409 | Msa1407940:intron | 55.0% |
| TCCCCCTGGTGTAAACTCCA+AGG | + | tig0023338:11948-11967 | Msa1407940:CDS | 55.0% | |
| CTTCCCATGAGTTTGGCAGG+GGG | + | tig0023338:12028-12047 | Msa1407940:CDS | 55.0% | |
| TTCCCATGAGTTTGGCAGGG+GGG | + | tig0023338:12029-12048 | Msa1407940:CDS | 55.0% | |
| TTCTTCCACCCCATCGGGAC+TGG | - | tig0023338:7720-7739 | None:intergenic | 60.0% | |
| ! | GCTGAGCTGAGTCGACTCCA+TGG | - | tig0023338:9407-9426 | None:intergenic | 60.0% |
| TTGGTTGGGACTTGAGGCGC+GGG | - | tig0023338:11211-11230 | None:intergenic | 60.0% | |
| GGAACATCAACCTCTCCCCC+TGG | + | tig0023338:11934-11953 | Msa1407940:CDS | 60.0% | |
| GGAGTTTACACCAGGGGGAG+AGG | - | tig0023338:11947-11966 | None:intergenic | 60.0% | |
| CTCCCCCCTGCCAAACTCAT+GGG | - | tig0023338:12034-12053 | None:intergenic | 60.0% | |
| TCTCCCCCCTGCCAAACTCA+TGG | - | tig0023338:12035-12054 | None:intergenic | 60.0% | |
| TAGGACCAGTCCCGATGGGG+TGG | + | tig0023338:7712-7731 | Msa1407940:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023338 | gene | 7204 | 12539 | 7204 | ID=Msa1407940;Name=Msa1407940 |
| tig0023338 | mRNA | 7204 | 12539 | 7204 | ID=Msa1407940-mRNA-1;Parent=Msa1407940;Name=Msa1407940-mRNA-1;_AED=0.08;_eAED=0.08;_QI=201|0.87|0.88|1|0.75|0.66|9|435|370 |
| tig0023338 | exon | 7204 | 7334 | 7204 | ID=Msa1407940-mRNA-1:exon:25352;Parent=Msa1407940-mRNA-1 |
| tig0023338 | exon | 7513 | 7571 | 7513 | ID=Msa1407940-mRNA-1:exon:25353;Parent=Msa1407940-mRNA-1 |
| tig0023338 | exon | 7715 | 7842 | 7715 | ID=Msa1407940-mRNA-1:exon:25354;Parent=Msa1407940-mRNA-1 |
| tig0023338 | exon | 7927 | 8067 | 7927 | ID=Msa1407940-mRNA-1:exon:25355;Parent=Msa1407940-mRNA-1 |
| tig0023338 | exon | 8146 | 8325 | 8146 | ID=Msa1407940-mRNA-1:exon:25356;Parent=Msa1407940-mRNA-1 |
| tig0023338 | exon | 8467 | 8661 | 8467 | ID=Msa1407940-mRNA-1:exon:25357;Parent=Msa1407940-mRNA-1 |
| tig0023338 | exon | 8763 | 8864 | 8763 | ID=Msa1407940-mRNA-1:exon:25358;Parent=Msa1407940-mRNA-1 |
| tig0023338 | exon | 9496 | 9567 | 9496 | ID=Msa1407940-mRNA-1:exon:25359;Parent=Msa1407940-mRNA-1 |
| tig0023338 | exon | 11799 | 12539 | 11799 | ID=Msa1407940-mRNA-1:exon:25360;Parent=Msa1407940-mRNA-1 |
| tig0023338 | five_prime_UTR | 7204 | 7334 | 7204 | ID=Msa1407940-mRNA-1:five_prime_utr;Parent=Msa1407940-mRNA-1 |
| tig0023338 | five_prime_UTR | 7513 | 7571 | 7513 | ID=Msa1407940-mRNA-1:five_prime_utr;Parent=Msa1407940-mRNA-1 |
| tig0023338 | five_prime_UTR | 7715 | 7725 | 7715 | ID=Msa1407940-mRNA-1:five_prime_utr;Parent=Msa1407940-mRNA-1 |
| tig0023338 | CDS | 7726 | 7842 | 7726 | ID=Msa1407940-mRNA-1:cds;Parent=Msa1407940-mRNA-1 |
| tig0023338 | CDS | 7927 | 8067 | 7927 | ID=Msa1407940-mRNA-1:cds;Parent=Msa1407940-mRNA-1 |
| tig0023338 | CDS | 8146 | 8325 | 8146 | ID=Msa1407940-mRNA-1:cds;Parent=Msa1407940-mRNA-1 |
| tig0023338 | CDS | 8467 | 8661 | 8467 | ID=Msa1407940-mRNA-1:cds;Parent=Msa1407940-mRNA-1 |
| tig0023338 | CDS | 8763 | 8864 | 8763 | ID=Msa1407940-mRNA-1:cds;Parent=Msa1407940-mRNA-1 |
| tig0023338 | CDS | 9496 | 9567 | 9496 | ID=Msa1407940-mRNA-1:cds;Parent=Msa1407940-mRNA-1 |
| tig0023338 | CDS | 11799 | 12104 | 11799 | ID=Msa1407940-mRNA-1:cds;Parent=Msa1407940-mRNA-1 |
| tig0023338 | three_prime_UTR | 12105 | 12539 | 12105 | ID=Msa1407940-mRNA-1:three_prime_utr;Parent=Msa1407940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
