AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379680 MtrunA17_Chr3g0132811 91.292 356 25 2 1 350 331 686 0.0 666
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379680 AT4G24490.1 47.414 348 166 10 9 349 337 674 1.18e-85 272
Msa0379680 AT4G24490.2 47.414 348 166 10 9 349 337 674 1.18e-85 272
Msa0379680 AT5G41820.2 40.563 355 178 12 7 350 353 685 6.29e-60 204
Msa0379680 AT5G41820.1 40.563 355 178 12 7 350 353 685 6.29e-60 204

Find 142 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACACTTCAAAAGTAATT+TGG 0.107140 3_1:+81050306 None:intergenic
TTGCACCTTCATTGCAAATT+TGG 0.129365 3_1:+81047926 None:intergenic
TCTTCAAATGGATATCATTA+TGG 0.162505 3_1:-81050338 Msa0379680:CDS
ATGATAAGTCTTATGTTAAA+AGG 0.182142 3_1:-81047852 Msa0379680:three_prime_UTR
CATGTCATTTCGGTGTTTCT+TGG 0.193148 3_1:+81047622 Msa0379690:three_prime_UTR
TAGTGACCTTGGTTTGTTTA+TGG 0.194176 3_1:-81048156 Msa0379680:three_prime_UTR
AGATACGAAGCGGCGTCTTT+TGG 0.244593 3_1:-81045048 Msa0379680:three_prime_UTR
GTTATAGTGCCACTAAGTTT+TGG 0.255391 3_1:-81048314 Msa0379680:CDS
GATACATAATTTAGTGTTGA+TGG 0.263929 3_1:+81047988 None:intergenic
TCACTCATTGTTTAAGATAA+AGG 0.264779 3_1:-81048103 Msa0379680:three_prime_UTR
TTCTGTAACTGTTTAACTTT+TGG 0.270128 3_1:-81048076 Msa0379680:three_prime_UTR
CCCTAGTGTTGGTTTCTACT+TGG 0.278297 3_1:+81047751 Msa0379690:three_prime_UTR
TAGTGATGTATAACAAATTA+TGG 0.290086 3_1:-81047787 Msa0379680:three_prime_UTR
CACCAAGCTTTCGCGTTCTT+CGG 0.307624 3_1:-81045282 Msa0379680:three_prime_UTR
TTGACTGATTTGAACATATC+AGG 0.309395 3_1:-81048261 Msa0379680:CDS
GGAAGCAAAGAAAGCTTATA+AGG 0.314616 3_1:+81045344 Msa0379690:CDS
CTTCAAATGGATATCATTAT+GGG 0.330697 3_1:-81050337 Msa0379680:CDS
AATTGGAAGTTGTTGGAATA+TGG 0.336661 3_1:+81050162 None:intergenic
GTGTTATGAAGGGAAGAAAA+TGG 0.346267 3_1:+81045317 Msa0379690:CDS
CGGTGTTTCTTGGCTTTGGC+AGG 0.347122 3_1:+81047632 Msa0379690:three_prime_UTR
ACACACTTCAAAAGTAATTT+GGG 0.361270 3_1:+81050307 None:intergenic
TTCGTTTGCGAGGTTGTTGA+TGG 0.363091 3_1:-81044989 Msa0379680:three_prime_UTR
ATTTCGGTGTTTCTTGGCTT+TGG 0.368482 3_1:+81047628 Msa0379690:three_prime_UTR
GCTATGGCACCATGTCATTT+CGG 0.393391 3_1:+81047612 Msa0379690:three_prime_UTR
TCTTTATAGTAGTGGCAATA+TGG 0.395093 3_1:+81049028 None:intergenic
GAAGATATACTTTATGAAGA+TGG 0.403250 3_1:-81048127 Msa0379680:three_prime_UTR
CTTTACCAAATTTGCAATGA+AGG 0.413126 3_1:-81047931 Msa0379680:three_prime_UTR
ATGCACCAATTGGAAGTTGT+TGG 0.414123 3_1:+81050155 None:intergenic
TTTCCACGTTGCCCGTCAAC+AGG 0.415381 3_1:+81050263 None:intergenic
TGCCTGTAGAAGCACTTAAC+AGG 0.416791 3_1:+81045397 Msa0379690:CDS
AATCTATCATTGTCACGAAT+GGG 0.417993 3_1:-81048962 Msa0379680:CDS
AATTGCCTCCATGCACCAAT+TGG 0.435270 3_1:+81050145 None:intergenic
GAGGTTGTTGATGGCGGATC+TGG 0.441588 3_1:-81044980 Msa0379680:three_prime_UTR
GATCACCGTTGGACATTCTA+CGG 0.445219 3_1:-81050369 Msa0379680:CDS
GTCCGAAGAACGCGAAAGCT+TGG 0.448178 3_1:+81045280 Msa0379690:CDS
GCGAAAGCTTGGTGTGCGTT+GGG 0.450050 3_1:+81045291 Msa0379690:CDS
CACATACTGAAGTATTTGCC+TGG 0.450894 3_1:-81048362 Msa0379680:CDS
GAAAGCTTCCCAAAACTTAG+TGG 0.451020 3_1:+81048305 None:intergenic
CGCGAAAGCTTGGTGTGCGT+TGG 0.456259 3_1:+81045290 Msa0379690:CDS
AGCGTGGCGGCTGCCGTCTA+AGG 0.458110 3_1:+81044618 None:intergenic
CTTCATTGCAAATTTGGTAA+AGG 0.458553 3_1:+81047932 None:intergenic
TTATAAGGAAGCTCATGAAT+TGG 0.465517 3_1:+81045359 Msa0379690:CDS
TTCACCTTGCTCAAGCGAAC+CGG 0.466250 3_1:-81045154 Msa0379680:three_prime_UTR
GTAAAGCTTGAGAACTTCTT+CGG 0.467812 3_1:+81049880 None:intergenic
GAAAGGTGTTTCATTAGCTA+TGG 0.469154 3_1:+81047596 Msa0379690:three_prime_UTR
AATATTTCTTGCAATGAGCT+AGG 0.472390 3_1:-81048432 Msa0379680:CDS
TGTTGGAATATGGTGATTAG+TGG 0.473545 3_1:+81050172 None:intergenic
GCTATGATTCTCGATCTTCA+AGG 0.478244 3_1:+81045078 Msa0379690:CDS
AATGAACTTCGATCAATTGA+AGG 0.480415 3_1:-81048893 Msa0379680:intron
CGATGAGAAATTTCCTCCGG+TGG 0.481698 3_1:-81044737 Msa0379680:three_prime_UTR
ATATTCCAACAACTTCCAAT+TGG 0.483856 3_1:-81050160 Msa0379680:CDS
TGATAAGTCTTATGTTAAAA+GGG 0.488415 3_1:-81047851 Msa0379680:three_prime_UTR
AACGTGGAAAGTTGACTTCA+TGG 0.490403 3_1:-81050250 Msa0379680:CDS
ATCGAAGTTCATTGTGGCTA+AGG 0.491541 3_1:+81048903 None:intergenic
TATTGATACTATGATTGCTC+TGG 0.492519 3_1:-81048028 Msa0379680:three_prime_UTR
AAATTCAACTTGACCTTAGA+CGG 0.494785 3_1:-81044631 Msa0379680:three_prime_UTR
AGGAGTGAGATTTGAACAAA+GGG 0.495443 3_1:+81047952 None:intergenic
AAATCTATCATTGTCACGAA+TGG 0.496579 3_1:-81048963 Msa0379680:CDS
AATGTGGCGGCGCTTTGTTA+AGG 0.496636 3_1:+81047667 Msa0379690:three_prime_UTR
TTCCGATGAGAAATTTCCTC+CGG 0.500080 3_1:-81044740 Msa0379680:three_prime_UTR
TTACACCGAGCTGATGAAGT+TGG 0.509117 3_1:-81049861 Msa0379680:CDS
ATGAAGAGTTATAGTGACCT+TGG 0.509294 3_1:-81048167 Msa0379680:exon
AACGGTGATCTCTATAGAAT+AGG 0.511032 3_1:+81050382 None:intergenic
AATCTGAGTCATAATAAACT+TGG 0.514137 3_1:-81048507 Msa0379680:CDS
ACGAGTTGACTCGGCGTTAG+CGG 0.514403 3_1:+81045233 Msa0379690:CDS
CTGATGCGTCTTTATAGTAG+TGG 0.518229 3_1:+81049020 None:intergenic
AAGGATTTCAAAACGGTCCC+AGG 0.521246 3_1:+81048344 None:intergenic
CGCCTAAGGCTTCGTTTGCG+AGG 0.524088 3_1:-81044999 Msa0379680:three_prime_UTR
CAGCAATGTAACAAAAGATA+CGG 0.526619 3_1:+81047535 Msa0379690:intron
AATACTTCAGTATGTGCTAA+AGG 0.531773 3_1:+81048369 None:intergenic
CTCATACAGAACCTGTTGAC+GGG 0.537445 3_1:-81050274 Msa0379680:CDS
TTGGTCGTTGTTGACATCAC+AGG 0.542052 3_1:-81048057 Msa0379680:three_prime_UTR
AAATTTGTGTACCCTAGTGT+TGG 0.542240 3_1:+81047740 Msa0379690:three_prime_UTR
TATTGAGGAAGAATGTATGT+TGG 0.544110 3_1:+81047574 Msa0379690:three_prime_UTR
CTACAAGGATGAGCACAGTC+TGG 0.544150 3_1:-81049819 Msa0379680:CDS
CAGTCTGGTATTACTTCGGC+AGG 0.545028 3_1:-81049804 Msa0379680:intron
TCATTTAAGCACTTCAGAGT+AGG 0.549730 3_1:+81048189 None:intergenic
GTGCTAAAGGCGAAGAGCAT+AGG 0.549796 3_1:+81048382 None:intergenic
ATACTAGTTATGTGTGTCTA+CGG 0.552144 3_1:-81048991 Msa0379680:CDS
AAGGAGTGAGATTTGAACAA+AGG 0.552451 3_1:+81047951 None:intergenic
ATTCTTCTTCTCACACCCAC+CGG 0.552726 3_1:+81044721 None:intergenic
TTAATCTTCCTCAGCATGCA+CGG 0.553368 3_1:+81044838 Msa0379690:CDS
TAAACAAGATAGAAGTTGCA+TGG 0.554228 3_1:+81048530 None:intergenic
GCGTTGTCTCCTCTCGCCGC+CGG 0.558332 3_1:+81045135 Msa0379690:CDS
GCGTTGGGAGAGTGTTATGA+AGG 0.558916 3_1:+81045306 Msa0379690:CDS
AACAACTTCCAATTGGTGCA+TGG 0.563161 3_1:-81050153 Msa0379680:CDS
GCTCATACAGAACCTGTTGA+CGG 0.564601 3_1:-81050275 Msa0379680:CDS
TGAACGCGGACGAGTTGACT+CGG 0.566518 3_1:+81045224 Msa0379690:CDS
CAAGCGATGTACCGCGACAT+CGG 0.569247 3_1:+81044784 Msa0379690:CDS
TGCCACAAAGGATTTCAAAA+CGG 0.571179 3_1:+81048337 None:intergenic
TGAAGGGAAGAAAATGGATG+AGG 0.575977 3_1:+81045323 Msa0379690:CDS
AACCTGTTAAGTGCTTCTAC+AGG 0.580757 3_1:-81045399 Msa0379680:three_prime_UTR
AGGAAGAATGTATGTTGGAA+AGG 0.594020 3_1:+81047579 Msa0379690:three_prime_UTR
ATCACCGTTGGACATTCTAC+GGG 0.595563 3_1:-81050368 Msa0379680:CDS
GCCGCCGGTTCGCTTGAGCA+AGG 0.596105 3_1:+81045150 Msa0379690:intron
TTTGGAATCGGAGTTTAGCG+AGG 0.596238 3_1:-81044876 Msa0379680:three_prime_UTR
AGCACAGTCTGGTATTACTT+CGG 0.602433 3_1:-81049808 Msa0379680:CDS
GTTTGCGAGGTTGTTGATGG+CGG 0.604157 3_1:-81044986 Msa0379680:three_prime_UTR
TGGATCCAACTTCATCAGCT+CGG 0.609055 3_1:+81049856 None:intergenic
TCAAGCGAACCGGCGGCGAG+AGG 0.609088 3_1:-81045144 Msa0379680:three_prime_UTR
ACATACTGAAGTATTTGCCT+GGG 0.609573 3_1:-81048361 Msa0379680:CDS
ATCTATCATTGTCACGAATG+GGG 0.611320 3_1:-81048961 Msa0379680:CDS
TTTATACCATAAACAAACCA+AGG 0.611364 3_1:+81048150 None:intergenic
GCAGTCTTGAACTTCTATTG+AGG 0.611422 3_1:+81047559 Msa0379690:exon
ACTTCAAAAGTAATTTGGGA+AGG 0.614137 3_1:+81050311 None:intergenic
CAATTGATCGAAGTTCATTG+TGG 0.616533 3_1:+81048897 None:intergenic
GATGAGAAATTTCCTCCGGT+GGG 0.617209 3_1:-81044736 Msa0379680:three_prime_UTR
CAAGAAACACCGAAATGACA+TGG 0.618215 3_1:-81047621 Msa0379680:three_prime_UTR
ACCAAGTAGAAACCAACACT+AGG 0.619181 3_1:-81047752 Msa0379680:three_prime_UTR
TGGAAAGTTGACTTCATGGA+AGG 0.621972 3_1:-81050246 Msa0379680:CDS
CACCGGAGGAAATTTCTCAT+CGG 0.622346 3_1:+81044738 None:intergenic
ACCTTGCTCAAGCGAACCGG+CGG 0.627328 3_1:-81045151 Msa0379680:three_prime_UTR
TATTCTATAGAGATCACCGT+TGG 0.629388 3_1:-81050380 Msa0379680:CDS
AACACATTCTCTATACTACA+AGG 0.631342 3_1:-81049834 Msa0379680:CDS
CCAAGTAGAAACCAACACTA+GGG 0.636091 3_1:-81047751 Msa0379680:three_prime_UTR
CTTCTTCTCACACCCACCGG+AGG 0.636563 3_1:+81044724 None:intergenic
AGTCATCATGATCCTCGCAA+TGG 0.640456 3_1:+81044813 Msa0379690:CDS
TTCAAATGGATATCATTATG+GGG 0.641853 3_1:-81050336 Msa0379680:CDS
GCAAAGCGTCACTTCGTACG+TGG 0.647924 3_1:+81044916 Msa0379690:intron
TTGTAGTATAGAGAATGTGT+TGG 0.648966 3_1:+81049836 None:intergenic
TCGCTTGAGCAAGGTGAACG+TGG 0.649304 3_1:+81045159 Msa0379690:intron
GATGTAAGAAGCAAATGTGG+CGG 0.650810 3_1:+81047654 Msa0379690:three_prime_UTR
CGTTGGGAGAGTGTTATGAA+GGG 0.659064 3_1:+81045307 Msa0379690:CDS
TGGCACTATAACTGCCACAA+AGG 0.659141 3_1:+81048325 None:intergenic
GTGGAATTCCGTGCATGCTG+AGG 0.659142 3_1:-81044846 Msa0379680:three_prime_UTR
AACCTCGCAAACGAAGCCTT+AGG 0.661102 3_1:+81044997 Msa0379690:CDS
CAGGATGTAAGAAGCAAATG+TGG 0.661856 3_1:+81047651 Msa0379690:three_prime_UTR
CGTTGTTGACATCACAGGTG+TGG 0.664239 3_1:-81048052 Msa0379680:three_prime_UTR
GTTAGCGGATTTGACTGAGT+CGG 0.668658 3_1:+81045248 Msa0379690:CDS
AGCTTTGAGAAGATACGAAG+CGG 0.671113 3_1:-81045058 Msa0379680:three_prime_UTR
AAACTCGCAACGAGTGAACG+CGG 0.681953 3_1:+81045210 Msa0379690:CDS
AACTTCCAATTGGTGCATGG+AGG 0.682685 3_1:-81050150 Msa0379680:CDS
AATACCCGTAGAATGTCCAA+CGG 0.701251 3_1:+81050364 None:intergenic
AAACAAAATGATAAGCGTGG+CGG 0.702036 3_1:+81044605 None:intergenic
GGAAGATTAAAGCCATTGCG+AGG 0.704504 3_1:-81044825 Msa0379680:three_prime_UTR
GAACCTGTTGACGGGCAACG+TGG 0.708889 3_1:-81050266 Msa0379680:CDS
ATGGTGATTAGTGGATACAG+CGG 0.711113 3_1:+81050181 None:intergenic
TGACTTGTAAACCGATGTCG+CGG 0.717200 3_1:-81044795 Msa0379680:three_prime_UTR
GGCGTCGAGTGATTCAAGAG+CGG 0.721407 3_1:-81045112 Msa0379680:three_prime_UTR
TCTACAGGCACAGAATACTG+TGG 0.738815 3_1:-81045384 Msa0379680:three_prime_UTR
AGCGACTCTAGCGATCTGAG+AGG 0.759932 3_1:+81048465 None:intergenic
GGCGGCGAGAGGAGACAACG+CGG 0.761382 3_1:-81045133 Msa0379680:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTAATGAATTTTC+TGG - chr3_1:81045250-81045269 Msa0379680:three_prime_UTR 10.0%
!! TGAACAAATAAAATTATTTA+TGG + chr3_1:81045898-81045917 Msa0379690:intron 10.0%
!!! AATTTTTTTTTAGAGATTAA+AGG + chr3_1:81047815-81047834 Msa0379690:three_prime_UTR 10.0%
!! GTTATATAAATGTAATAAAA+GGG + chr3_1:81048980-81048999 None:intergenic 10.0%
!! TGTTATATAAATGTAATAAA+AGG + chr3_1:81048981-81049000 None:intergenic 10.0%
!!! ATTTTTTCTTTTATCATGTT+GGG + chr3_1:81045088-81045107 Msa0379690:CDS 15.0%
!! ACAAATAAAATTATTTATGG+TGG + chr3_1:81045895-81045914 Msa0379690:intron 15.0%
!!! TTTTTTTTTTCATGAACTTT+GGG + chr3_1:81047791-81047810 Msa0379690:three_prime_UTR 15.0%
!!! TTTTTTTTTTTCATGAACTT+TGG + chr3_1:81047792-81047811 Msa0379690:three_prime_UTR 15.0%
!!! CTTCAAAATGATCAATTTTT+CGG + chr3_1:81044782-81044801 Msa0379690:CDS 20.0%
!! GAAATATAACTGGAAAATAT+GGG + chr3_1:81044976-81044995 Msa0379690:CDS 20.0%
!! TGAAATATAACTGGAAAATA+TGG + chr3_1:81044977-81044996 Msa0379690:CDS 20.0%
!!! TTTTTTCTTTTATCATGTTG+GGG + chr3_1:81045087-81045106 Msa0379690:CDS 20.0%
!!! GATTTTTTCTTTTATCATGT+TGG + chr3_1:81045089-81045108 Msa0379690:CDS 20.0%
!! TTTACCAAAAAATTAGATGA+TGG - chr3_1:81045527-81045546 Msa0379680:intron 20.0%
!!! GAGAATATTTTTGAGTTAAT+GGG - chr3_1:81045549-81045568 Msa0379680:intron 20.0%
!!! ATAAAATTATTTATGGTGGA+AGG + chr3_1:81045891-81045910 Msa0379690:intron 20.0%
!!! TTTTATTTGTTCATGTTATG+AGG - chr3_1:81045905-81045924 Msa0379680:intron 20.0%
!! ATAATAACGCTAAATTATAG+TGG + chr3_1:81046182-81046201 Msa0379690:intron 20.0%
!! TAATTTAGCGTTATTATTAC+TGG - chr3_1:81046185-81046204 Msa0379680:intron 20.0%
!! AATTTAGCGTTATTATTACT+GGG - chr3_1:81046186-81046205 Msa0379680:intron 20.0%
!! AATGAGAATATTGATGTTAA+TGG - chr3_1:81046295-81046314 Msa0379680:intron 20.0%
!!! ATGATAAGTCTTATGTTAAA+AGG - chr3_1:81047140-81047159 Msa0379680:intron 20.0%
!!! TGATAAGTCTTATGTTAAAA+GGG - chr3_1:81047141-81047160 Msa0379680:intron 20.0%
!! TAGTGATGTATAACAAATTA+TGG - chr3_1:81047205-81047224 Msa0379680:intron 20.0%
!!! TTTTTTTCATCAACAACAAT+AGG + chr3_1:81047534-81047553 Msa0379690:intron 20.0%
!!! TTATAATTTGCCAAATTTCA+AGG + chr3_1:81048363-81048382 None:intergenic 20.0%
!!! TTTTTGAAAGAGAATATTAC+TGG - chr3_1:81048443-81048462 Msa0379680:CDS 20.0%
!! AAAATAGACAAATTCAAACT+TGG - chr3_1:81048565-81048584 Msa0379680:intron 20.0%
!! GCTATTTACAGATTTATTAT+AGG + chr3_1:81048799-81048818 None:intergenic 20.0%
!!! ACGTGTTAATTTTATAAATG+TGG - chr3_1:81048940-81048959 Msa0379680:CDS 20.0%
!!! CGTGTTAATTTTATAAATGT+GGG - chr3_1:81048941-81048960 Msa0379680:CDS 20.0%
!! TGCTAAATTAAAAGACTTAT+GGG + chr3_1:81049496-81049515 None:intergenic 20.0%
!! ATGCTAAATTAAAAGACTTA+TGG + chr3_1:81049497-81049516 None:intergenic 20.0%
! TCTTCAAATGGATATCATTA+TGG - chr3_1:81044654-81044673 Msa0379680:three_prime_UTR 25.0%
! CTTCAAATGGATATCATTAT+GGG - chr3_1:81044655-81044674 Msa0379680:three_prime_UTR 25.0%
! TTCAAATGGATATCATTATG+GGG - chr3_1:81044656-81044675 Msa0379680:three_prime_UTR 25.0%
! ACACACTTCAAAAGTAATTT+GGG + chr3_1:81044688-81044707 None:intergenic 25.0%
! CCATAAAGCAATACATTTAT+CGG + chr3_1:81044925-81044944 Msa0379690:intron 25.0%
! GCATCAAATTGAAATATAAC+TGG + chr3_1:81044986-81045005 Msa0379690:CDS 25.0%
!!! GATTTTCTGTGATTTTAATC+TGG - chr3_1:81045292-81045311 Msa0379680:three_prime_UTR 25.0%
! GAAAAAATGTGTTAACAAGT+TGG - chr3_1:81045366-81045385 Msa0379680:three_prime_UTR 25.0%
! CTAAGTCAAAGAATAAGATA+AGG - chr3_1:81045398-81045417 Msa0379680:three_prime_UTR 25.0%
! AAGATAAGGAATGAAAGAAA+TGG - chr3_1:81045412-81045431 Msa0379680:intron 25.0%
! AGAAAAGTTTATGCTGAAAT+AGG - chr3_1:81045481-81045500 Msa0379680:intron 25.0%
!!! TTCTCCATCATCTAATTTTT+TGG + chr3_1:81045534-81045553 Msa0379690:intron 25.0%
!!! GGAGAATATTTTTGAGTTAA+TGG - chr3_1:81045548-81045567 Msa0379680:intron 25.0%
! CAATATTCTCATTAAAGCTT+GGG + chr3_1:81046288-81046307 Msa0379690:intron 25.0%
! TCAATATTCTCATTAAAGCT+TGG + chr3_1:81046289-81046308 Msa0379690:intron 25.0%
! AATCTGAGTCATAATAAACT+TGG - chr3_1:81046485-81046504 Msa0379680:intron 25.0%
! TTTATACCATAAACAAACCA+AGG + chr3_1:81046845-81046864 Msa0379690:intron 25.0%
! GAAGATATACTTTATGAAGA+TGG - chr3_1:81046865-81046884 Msa0379680:intron 25.0%
!! TCACTCATTGTTTAAGATAA+AGG - chr3_1:81046889-81046908 Msa0379680:intron 25.0%
!!! TTCTGTAACTGTTTAACTTT+TGG - chr3_1:81046916-81046935 Msa0379680:intron 25.0%
!! GATACATAATTTAGTGTTGA+TGG + chr3_1:81047007-81047026 Msa0379690:intron 25.0%
!!! GTGAAGACTTGTTTTTATTA+TGG - chr3_1:81047751-81047770 Msa0379680:three_prime_UTR 25.0%
! ATACAATGCTTAAACTGTTT+AGG - chr3_1:81047866-81047885 Msa0379680:three_prime_UTR 25.0%
!!! TTTAGCTTTTGATTCACAAA+TGG + chr3_1:81047967-81047986 None:intergenic 25.0%
!! AAACAAAAGTGTGAAAATCT+AGG - chr3_1:81048520-81048539 Msa0379680:CDS 25.0%
! GGATGTCAATATTGAAAATT+TGG + chr3_1:81048593-81048612 None:intergenic 25.0%
! TGATCATCATCTAAAAATGT+TGG + chr3_1:81048628-81048647 None:intergenic 25.0%
!!! TGAACTCTATTTTCTTGTTT+TGG - chr3_1:81048826-81048845 Msa0379680:intron 25.0%
!! ATAACATTTTACCAAACGAA+AGG - chr3_1:81048995-81049014 Msa0379680:CDS 25.0%
!! ATTTTTAATCTCCTTTCGTT+TGG + chr3_1:81049009-81049028 None:intergenic 25.0%
!!! AGGACATTTTTTGCTAAAAT+TGG + chr3_1:81049213-81049232 None:intergenic 25.0%
!! TGAAGTTAAGTTGTGTTAAA+AGG + chr3_1:81049236-81049255 None:intergenic 25.0%
! GAAATATTTATTCTTCCTTC+TGG + chr3_1:81049368-81049387 None:intergenic 25.0%
! AAATTTCTCATCGGAAAAAA+TGG + chr3_1:81050248-81050267 None:intergenic 25.0%
! TAAAAACAAAATGATAAGCG+TGG + chr3_1:81050393-81050412 None:intergenic 25.0%
! ACGGGTATTTTATCTTCAAA+TGG - chr3_1:81044642-81044661 Msa0379680:three_prime_UTR 30.0%
ACTTCAAAAGTAATTTGGGA+AGG + chr3_1:81044684-81044703 None:intergenic 30.0%
CACACACTTCAAAAGTAATT+TGG + chr3_1:81044689-81044708 None:intergenic 30.0%
AATTGGAAGTTGTTGGAATA+TGG + chr3_1:81044833-81044852 Msa0379690:CDS 30.0%
ATATTCCAACAACTTCCAAT+TGG - chr3_1:81044832-81044851 Msa0379680:three_prime_UTR 30.0%
CCGATAAATGTATTGCTTTA+TGG - chr3_1:81044922-81044941 Msa0379680:three_prime_UTR 30.0%
ATATGGGAAAAGAACTTACT+AGG + chr3_1:81044960-81044979 Msa0379690:CDS 30.0%
TTGTAGTATAGAGAATGTGT+TGG + chr3_1:81045159-81045178 Msa0379690:intron 30.0%
AACACATTCTCTATACTACA+AGG - chr3_1:81045158-81045177 Msa0379680:three_prime_UTR 30.0%
TCTGGATATGAGAAAAAATG+TGG - chr3_1:81045310-81045329 Msa0379680:three_prime_UTR 30.0%
CTGGTTATGAGAAAAAAAAG+TGG - chr3_1:81045696-81045715 Msa0379680:intron 30.0%
TCTTTATAGTAGTGGCAATA+TGG + chr3_1:81045967-81045986 Msa0379690:intron 30.0%
ATACTAGTTATGTGTGTCTA+CGG - chr3_1:81046001-81046020 Msa0379680:intron 30.0%
AAATCTATCATTGTCACGAA+TGG - chr3_1:81046029-81046048 Msa0379680:intron 30.0%
AATCTATCATTGTCACGAAT+GGG - chr3_1:81046030-81046049 Msa0379680:intron 30.0%
!! GTCTTTTGAGAATTTACTGT+GGG - chr3_1:81046053-81046072 Msa0379680:intron 30.0%
AATGAACTTCGATCAATTGA+AGG - chr3_1:81046099-81046118 Msa0379680:intron 30.0%
AAATTATAGTGGTGTTTGAG+TGG + chr3_1:81046171-81046190 Msa0379690:intron 30.0%
CTAAAATTGCCAAAAGTGAT+AGG + chr3_1:81046376-81046395 Msa0379690:intron 30.0%
! TATCATTGCTTCTAAGAAGT+TGG - chr3_1:81046400-81046419 Msa0379680:intron 30.0%
!!! TGACACTGAATTTTTTGACA+GGG - chr3_1:81046432-81046451 Msa0379680:intron 30.0%
TAAACAAGATAGAAGTTGCA+TGG + chr3_1:81046465-81046484 Msa0379690:intron 30.0%
AATATTTCTTGCAATGAGCT+AGG - chr3_1:81046560-81046579 Msa0379680:intron 30.0%
AATACTTCAGTATGTGCTAA+AGG + chr3_1:81046626-81046645 Msa0379690:intron 30.0%
!! TTATAGTGCCACTAAGTTTT+GGG - chr3_1:81046679-81046698 Msa0379680:intron 30.0%
!! TTGACTGATTTGAACATATC+AGG - chr3_1:81046731-81046750 Msa0379680:intron 30.0%
TATTGATACTATGATTGCTC+TGG - chr3_1:81046964-81046983 Msa0379680:intron 30.0%
CTTCATTGCAAATTTGGTAA+AGG + chr3_1:81047063-81047082 Msa0379690:intron 30.0%
CTTTACCAAATTTGCAATGA+AGG - chr3_1:81047061-81047080 Msa0379680:intron 30.0%
! TTAAAGATCGCATTTTCTCA+AGG + chr3_1:81047102-81047121 Msa0379690:intron 30.0%
TATTGAGGAAGAATGTATGT+TGG + chr3_1:81047421-81047440 Msa0379690:intron 30.0%
CAGCAATGTAACAAAAGATA+CGG + chr3_1:81047460-81047479 Msa0379690:intron 30.0%
AAGTTAGTATCAGAGACAAT+CGG - chr3_1:81047498-81047517 Msa0379680:intron 30.0%
AACTATTGACCAACAATTCA+TGG + chr3_1:81047616-81047635 Msa0379690:three_prime_UTR 30.0%
AATGCTTAAACTGTTTAGGT+AGG - chr3_1:81047870-81047889 Msa0379680:three_prime_UTR 30.0%
ATGCTTAAACTGTTTAGGTA+GGG - chr3_1:81047871-81047890 Msa0379680:three_prime_UTR 30.0%
AAGAGGCTAAAAGTAGAAAT+TGG + chr3_1:81048119-81048138 None:intergenic 30.0%
!! CTTCACTTGTTTTCTCTTTT+GGG + chr3_1:81048175-81048194 None:intergenic 30.0%
TCATGAAATTGCAAGTGAAA+GGG - chr3_1:81048286-81048305 Msa0379680:CDS 30.0%
AAGAGATACACCTTGAAATT+TGG - chr3_1:81048350-81048369 Msa0379680:CDS 30.0%
! AATTGGCCATTGATAATAGA+AGG - chr3_1:81048391-81048410 Msa0379680:CDS 30.0%
AATATTGACATCCAAGTTAC+TGG - chr3_1:81048600-81048619 Msa0379680:intron 30.0%
AGGACTACGAATTATTCAAA+AGG + chr3_1:81048741-81048760 None:intergenic 30.0%
AAAAGCGATTAAAGCAAACA+TGG - chr3_1:81049050-81049069 Msa0379680:CDS 30.0%
TTGAACGTAATCACATGTAT+CGG + chr3_1:81049119-81049138 None:intergenic 30.0%
! AGTTAAGTTGTGTTAAAAGG+AGG + chr3_1:81049233-81049252 None:intergenic 30.0%
TATCATGAAGAGCAAAGTTT+CGG + chr3_1:81049410-81049429 None:intergenic 30.0%
TAGGCGTTAATAAATGATTC+TGG + chr3_1:81049466-81049485 None:intergenic 30.0%
TTATAAGGAAGCTCATGAAT+TGG + chr3_1:81049636-81049655 None:intergenic 30.0%
AAATTCAACTTGACCTTAGA+CGG - chr3_1:81050361-81050380 Msa0379680:CDS 30.0%
AACGGTGATCTCTATAGAAT+AGG + chr3_1:81044613-81044632 None:intergenic 35.0%
TATTCTATAGAGATCACCGT+TGG - chr3_1:81044612-81044631 Msa0379680:three_prime_UTR 35.0%
TGTTGGAATATGGTGATTAG+TGG + chr3_1:81044823-81044842 Msa0379690:CDS 35.0%
GTAAAGCTTGAGAACTTCTT+CGG + chr3_1:81045115-81045134 Msa0379690:CDS 35.0%
!!! CATTTTTTCAAGCACAGAGT+TGG + chr3_1:81045355-81045374 Msa0379690:CDS 35.0%
CTGATAATTTACTCCTTCTG+TGG - chr3_1:81045666-81045685 Msa0379680:intron 35.0%
TCAATCTGAGAATTCAAGCT+CGG + chr3_1:81045747-81045766 Msa0379690:intron 35.0%
ATCTATCATTGTCACGAATG+GGG - chr3_1:81046031-81046050 Msa0379680:intron 35.0%
!! GGTCTTTTGAGAATTTACTG+TGG - chr3_1:81046052-81046071 Msa0379680:intron 35.0%
CAATTGATCGAAGTTCATTG+TGG + chr3_1:81046098-81046117 Msa0379690:intron 35.0%
!! TCCACTTTTCCTATCACTTT+TGG - chr3_1:81046364-81046383 Msa0379680:intron 35.0%
!!! CTGACACTGAATTTTTTGAC+AGG - chr3_1:81046431-81046450 Msa0379680:intron 35.0%
!!! ACTGAATTTTTTGACAGGGT+TGG - chr3_1:81046436-81046455 Msa0379680:intron 35.0%
!! ACTTGGTAGTTTTACTGCTT+TGG - chr3_1:81046502-81046521 Msa0379680:intron 35.0%
!! CTTGGTAGTTTTACTGCTTT+GGG - chr3_1:81046503-81046522 Msa0379680:intron 35.0%
!! TTGGTAGTTTTACTGCTTTG+GGG - chr3_1:81046504-81046523 Msa0379680:intron 35.0%
! ACATACTGAAGTATTTGCCT+GGG - chr3_1:81046631-81046650 Msa0379680:intron 35.0%
TGCCACAAAGGATTTCAAAA+CGG + chr3_1:81046658-81046677 Msa0379690:intron 35.0%
!! GTTATAGTGCCACTAAGTTT+TGG - chr3_1:81046678-81046697 Msa0379680:intron 35.0%
TCATTTAAGCACTTCAGAGT+AGG + chr3_1:81046806-81046825 Msa0379690:intron 35.0%
ATGAAGAGTTATAGTGACCT+TGG - chr3_1:81046825-81046844 Msa0379680:intron 35.0%
!! TAGTGACCTTGGTTTGTTTA+TGG - chr3_1:81046836-81046855 Msa0379680:intron 35.0%
AGGAGTGAGATTTGAACAAA+GGG + chr3_1:81047043-81047062 Msa0379690:intron 35.0%
AAGGAGTGAGATTTGAACAA+AGG + chr3_1:81047044-81047063 Msa0379690:intron 35.0%
TTGCACCTTCATTGCAAATT+TGG + chr3_1:81047069-81047088 Msa0379690:intron 35.0%
AAATTTGTGTACCCTAGTGT+TGG + chr3_1:81047255-81047274 Msa0379690:intron 35.0%
!! GAAAGGTGTTTCATTAGCTA+TGG + chr3_1:81047399-81047418 Msa0379690:intron 35.0%
AGGAAGAATGTATGTTGGAA+AGG + chr3_1:81047416-81047435 Msa0379690:intron 35.0%
TATACAAGCGAAAAGACATG+AGG - chr3_1:81047672-81047691 Msa0379680:three_prime_UTR 35.0%
AAAAACAAGTCTTCACTCGT+GGG + chr3_1:81047747-81047766 Msa0379690:three_prime_UTR 35.0%
TAAAAACAAGTCTTCACTCG+TGG + chr3_1:81047748-81047767 Msa0379690:three_prime_UTR 35.0%
GAGAAATGTTAACCAATGTC+CGG - chr3_1:81047994-81048013 Msa0379680:three_prime_UTR 35.0%
AGAAATGTTAACCAATGTCC+GGG - chr3_1:81047995-81048014 Msa0379680:three_prime_UTR 35.0%
!! CCTTCACTTGTTTTCTCTTT+TGG + chr3_1:81048176-81048195 None:intergenic 35.0%
CCAAAAGAGAAAACAAGTGA+AGG - chr3_1:81048173-81048192 Msa0379680:exon 35.0%
CAAGTGAAGGAACAAAGTAA+AGG - chr3_1:81048186-81048205 Msa0379680:CDS 35.0%
GTCATGAAATTGCAAGTGAA+AGG - chr3_1:81048285-81048304 Msa0379680:CDS 35.0%
GCTTCTCCTTCTATTATCAA+TGG + chr3_1:81048400-81048419 None:intergenic 35.0%
AAATGTTGGAACCAGTAACT+TGG + chr3_1:81048614-81048633 None:intergenic 35.0%
CAAAACCAAAACCAGATTGT+GGG - chr3_1:81048691-81048710 Msa0379680:intron 35.0%
AAAACCAAAACCAGATTGTG+GGG - chr3_1:81048692-81048711 Msa0379680:intron 35.0%
ATTCAAAAGGTGAGTTAGTG+TGG + chr3_1:81048728-81048747 None:intergenic 35.0%
TGTGGCATGGAAAATTGAAA+AGG - chr3_1:81048770-81048789 Msa0379680:intron 35.0%
! TTGGCATATTTTATCGTGAG+AGG - chr3_1:81048845-81048864 Msa0379680:intron 35.0%
! ATATTTTATCGTGAGAGGAG+AGG - chr3_1:81048850-81048869 Msa0379680:intron 35.0%
!! GTTTGAAGTGATTTTGAGAG+TGG + chr3_1:81048884-81048903 None:intergenic 35.0%
AATAAAACGAGAGGAACATC+AGG + chr3_1:81049263-81049282 None:intergenic 35.0%
CCAACTGAAAATAAAACGAG+AGG + chr3_1:81049272-81049291 None:intergenic 35.0%
!!! CCTCTCGTTTTATTTTCAGT+TGG - chr3_1:81049269-81049288 Msa0379680:intron 35.0%
!!! GTTGGTTTTGAAACAACGAA+CGG - chr3_1:81049287-81049306 Msa0379680:intron 35.0%
CGTTTCTTTCTTAATCCAGA+AGG - chr3_1:81049350-81049369 Msa0379680:intron 35.0%
GGAAGCAAAGAAAGCTTATA+AGG + chr3_1:81049651-81049670 None:intergenic 35.0%
GTGTTATGAAGGGAAGAAAA+TGG + chr3_1:81049678-81049697 None:intergenic 35.0%
!! GCTTTGCTTTGATTGCTTTT+CGG - chr3_1:81050092-81050111 Msa0379680:intron 35.0%
!! CTTTGATTGCTTTTCGGTTT+TGG - chr3_1:81050098-81050117 Msa0379680:intron 35.0%
!!! TTGCTTTTCGGTTTTGGAAT+CGG - chr3_1:81050104-81050123 Msa0379680:intron 35.0%
! AGTTTAGCGAGGAATTTTTG+TGG - chr3_1:81050127-81050146 Msa0379680:CDS 35.0%
!!! TGTGTGTGTGTTTTGAGAAT+CGG - chr3_1:81050309-81050328 Msa0379680:intron 35.0%
AAACAAAATGATAAGCGTGG+CGG + chr3_1:81050390-81050409 None:intergenic 35.0%
AATACCCGTAGAATGTCCAA+CGG + chr3_1:81044631-81044650 None:intergenic 40.0%
! AACGTGGAAAGTTGACTTCA+TGG - chr3_1:81044742-81044761 Msa0379680:three_prime_UTR 40.0%
! TGGAAAGTTGACTTCATGGA+AGG - chr3_1:81044746-81044765 Msa0379680:three_prime_UTR 40.0%
! ATGGTGATTAGTGGATACAG+CGG + chr3_1:81044814-81044833 Msa0379690:CDS 40.0%
ATGCACCAATTGGAAGTTGT+TGG + chr3_1:81044840-81044859 Msa0379690:CDS 40.0%
AACAACTTCCAATTGGTGCA+TGG - chr3_1:81044839-81044858 Msa0379680:three_prime_UTR 40.0%
TGGGAAAAGAACTTACTAGG+TGG + chr3_1:81044957-81044976 Msa0379690:CDS 40.0%
AGCACAGTCTGGTATTACTT+CGG - chr3_1:81045184-81045203 Msa0379680:three_prime_UTR 40.0%
CAATTCTACAATTGTGCGCA+GGG + chr3_1:81045599-81045618 Msa0379690:intron 40.0%
TTGGCTGTCTGAATTTCTGA+TGG - chr3_1:81045616-81045635 Msa0379680:intron 40.0%
TGGCTGTCTGAATTTCTGAT+GGG - chr3_1:81045617-81045636 Msa0379680:intron 40.0%
AACCAGAAGAAAACCACAGA+AGG + chr3_1:81045682-81045701 Msa0379690:intron 40.0%
CTGATGCGTCTTTATAGTAG+TGG + chr3_1:81045975-81045994 Msa0379690:intron 40.0%
ATCGAAGTTCATTGTGGCTA+AGG + chr3_1:81046092-81046111 Msa0379690:intron 40.0%
TATAGTGGTGTTTGAGTGGA+GGG + chr3_1:81046167-81046186 Msa0379690:intron 40.0%
TTATAGTGGTGTTTGAGTGG+AGG + chr3_1:81046168-81046187 Msa0379690:intron 40.0%
AGCGTTATTATTACTGGGTG+TGG - chr3_1:81046191-81046210 Msa0379680:intron 40.0%
!! AAGCTTGGGTTAGCAAAAAG+TGG + chr3_1:81046274-81046293 Msa0379690:intron 40.0%
GCCAAAAGTGATAGGAAAAG+TGG + chr3_1:81046368-81046387 Msa0379690:intron 40.0%
! TGCTTCTAAGAAGTTGGAAG+AGG - chr3_1:81046406-81046425 Msa0379680:intron 40.0%
! GCTTCTAAGAAGTTGGAAGA+GGG - chr3_1:81046407-81046426 Msa0379680:intron 40.0%
!!! GAATTTTTTGACAGGGTTGG+AGG - chr3_1:81046439-81046458 Msa0379680:intron 40.0%
! CACATACTGAAGTATTTGCC+TGG - chr3_1:81046630-81046649 Msa0379680:intron 40.0%
!!! GACCGTTTTGAAATCCTTTG+TGG - chr3_1:81046653-81046672 Msa0379680:intron 40.0%
GAAAGCTTCCCAAAACTTAG+TGG + chr3_1:81046690-81046709 Msa0379690:intron 40.0%
ACCAAGTAGAAACCAACACT+AGG - chr3_1:81047240-81047259 Msa0379680:intron 40.0%
CCAAGTAGAAACCAACACTA+GGG - chr3_1:81047241-81047260 Msa0379680:intron 40.0%
GATGTAAGAAGCAAATGTGG+CGG + chr3_1:81047341-81047360 Msa0379690:intron 40.0%
CAGGATGTAAGAAGCAAATG+TGG + chr3_1:81047344-81047363 Msa0379690:intron 40.0%
!! ATTTCGGTGTTTCTTGGCTT+TGG + chr3_1:81047367-81047386 Msa0379690:intron 40.0%
!! CATGTCATTTCGGTGTTTCT+TGG + chr3_1:81047373-81047392 Msa0379690:intron 40.0%
CAAGAAACACCGAAATGACA+TGG - chr3_1:81047371-81047390 Msa0379680:intron 40.0%
GCAGTCTTGAACTTCTATTG+AGG + chr3_1:81047436-81047455 Msa0379690:intron 40.0%
TTAGTATCAGAGACAATCGG+TGG - chr3_1:81047501-81047520 Msa0379680:intron 40.0%
ACCAACAATTCATGGCATCA+CGG + chr3_1:81047608-81047627 Msa0379690:three_prime_UTR 40.0%
ACTCGTGGGTTTGTATTAGT+GGG + chr3_1:81047733-81047752 Msa0379690:three_prime_UTR 40.0%
GAAATGTTAACCAATGTCCG+GGG - chr3_1:81047996-81048015 Msa0379680:three_prime_UTR 40.0%
AGCCTCTTTAAACAATGTCC+CGG - chr3_1:81048131-81048150 Msa0379680:three_prime_UTR 40.0%
!! CTCTTTTGGGTCATGTTAAC+CGG + chr3_1:81048162-81048181 None:intergenic 40.0%
GTTGTGAATTCATGGAAGCA+TGG + chr3_1:81048262-81048281 None:intergenic 40.0%
ATGACGTGGTTGTGAATTCA+TGG + chr3_1:81048270-81048289 None:intergenic 40.0%
TCACTTGCAATTTCATGACG+TGG + chr3_1:81048284-81048303 None:intergenic 40.0%
TCAAGACAGCAAAAGTTGCA+CGG - chr3_1:81048327-81048346 Msa0379680:CDS 40.0%
AAAAACACGAGAAGCCACAT+GGG + chr3_1:81048428-81048447 None:intergenic 40.0%
GTGAAAATCTAGGCATGTAG+TGG - chr3_1:81048530-81048549 Msa0379680:CDS 40.0%
!!! CCACAATCTGGTTTTGGTTT+TGG + chr3_1:81048693-81048712 None:intergenic 40.0%
CCAAAACCAAAACCAGATTG+TGG - chr3_1:81048690-81048709 Msa0379680:intron 40.0%
CGTAGTCCTAATTACGATTG+TGG - chr3_1:81048752-81048771 Msa0379680:intron 40.0%
TCCTAATTACGATTGTGGCA+TGG - chr3_1:81048757-81048776 Msa0379680:intron 40.0%
TCCATGCCACAATCGTAATT+AGG + chr3_1:81048761-81048780 None:intergenic 40.0%
! TAATCACATGTATCGGTGTC+AGG + chr3_1:81049112-81049131 None:intergenic 40.0%
AAGACTTATGGGTCAAGAGT+AGG + chr3_1:81049485-81049504 None:intergenic 40.0%
!! GTAGAAGCACTTAACAGGTT+GGG + chr3_1:81049593-81049612 None:intergenic 40.0%
!! TGTAGAAGCACTTAACAGGT+TGG + chr3_1:81049594-81049613 None:intergenic 40.0%
AACCTGTTAAGTGCTTCTAC+AGG - chr3_1:81049593-81049612 Msa0379680:intron 40.0%
TGAAGGGAAGAAAATGGATG+AGG + chr3_1:81049672-81049691 None:intergenic 40.0%
GCTATGATTCTCGATCTTCA+AGG + chr3_1:81049917-81049936 None:intergenic 40.0%
!! AGCTTTGAGAAGATACGAAG+CGG - chr3_1:81049934-81049953 Msa0379680:CDS 40.0%
!!! ATCGAGTTCGATCGCTTTTT+CGG - chr3_1:81049967-81049986 Msa0379680:intron 40.0%
TTAATCTTCCTCAGCATGCA+CGG + chr3_1:81050157-81050176 None:intergenic 40.0%
TTCCGATGAGAAATTTCCTC+CGG - chr3_1:81050252-81050271 Msa0379680:CDS 40.0%
GATCACCGTTGGACATTCTA+CGG - chr3_1:81044623-81044642 Msa0379680:three_prime_UTR 45.0%
ATCACCGTTGGACATTCTAC+GGG - chr3_1:81044624-81044643 Msa0379680:three_prime_UTR 45.0%
GCTCATACAGAACCTGTTGA+CGG - chr3_1:81044717-81044736 Msa0379680:three_prime_UTR 45.0%
CTCATACAGAACCTGTTGAC+GGG - chr3_1:81044718-81044737 Msa0379680:three_prime_UTR 45.0%
AACTTCCAATTGGTGCATGG+AGG - chr3_1:81044842-81044861 Msa0379680:three_prime_UTR 45.0%
AATTGCCTCCATGCACCAAT+TGG + chr3_1:81044850-81044869 Msa0379690:CDS 45.0%
TTCAAGATTCGCTGTCAGAC+TGG - chr3_1:81044889-81044908 Msa0379680:three_prime_UTR 45.0%
TTACACCGAGCTGATGAAGT+TGG - chr3_1:81045131-81045150 Msa0379680:three_prime_UTR 45.0%
TGGATCCAACTTCATCAGCT+CGG + chr3_1:81045139-81045158 Msa0379690:intron 45.0%
!! TTGAGTTAATGGGCTGTGAC+AGG - chr3_1:81045559-81045578 Msa0379680:intron 45.0%
!! TGAGTTAATGGGCTGTGACA+GGG - chr3_1:81045560-81045579 Msa0379680:intron 45.0%
GTGCGCAGGGCATAAATTAT+AGG + chr3_1:81045586-81045605 Msa0379690:intron 45.0%
CCAATTCTACAATTGTGCGC+AGG + chr3_1:81045600-81045619 Msa0379690:intron 45.0%
CCTGCGCACAATTGTAGAAT+TGG - chr3_1:81045597-81045616 Msa0379680:intron 45.0%
TTATCAGTCGTGCATGTACG+AGG + chr3_1:81045653-81045672 Msa0379690:intron 45.0%
! CTCCTTCTGTGGTTTTCTTC+TGG - chr3_1:81045677-81045696 Msa0379680:intron 45.0%
AAGGATTTCAAAACGGTCCC+AGG + chr3_1:81046651-81046670 Msa0379690:intron 45.0%
TGGCACTATAACTGCCACAA+AGG + chr3_1:81046670-81046689 Msa0379690:intron 45.0%
TTGGTCGTTGTTGACATCAC+AGG - chr3_1:81046935-81046954 Msa0379680:intron 45.0%
!! CCCTAGTGTTGGTTTCTACT+TGG + chr3_1:81047244-81047263 Msa0379690:intron 45.0%
! GCTATGGCACCATGTCATTT+CGG + chr3_1:81047383-81047402 Msa0379690:intron 45.0%
CAATTCATGGCATCACGGTA+TGG + chr3_1:81047603-81047622 Msa0379690:three_prime_UTR 45.0%
ACCGTGATGCCATGAATTGT+TGG - chr3_1:81047604-81047623 Msa0379680:three_prime_UTR 45.0%
AGCGAAAAGACATGAGGTTG+AGG - chr3_1:81047678-81047697 Msa0379680:three_prime_UTR 45.0%
CACTCGTGGGTTTGTATTAG+TGG + chr3_1:81047734-81047753 Msa0379690:three_prime_UTR 45.0%
CTCCGGGACATTGTTTAAAG+AGG + chr3_1:81048136-81048155 None:intergenic 45.0%
CTCTTTAAACAATGTCCCGG+AGG - chr3_1:81048134-81048153 Msa0379680:three_prime_UTR 45.0%
CAAAAACACGAGAAGCCACA+TGG + chr3_1:81048429-81048448 None:intergenic 45.0%
ACTGGTAAGTAGCAACGACT+CGG - chr3_1:81048461-81048480 Msa0379680:CDS 45.0%
GGTGCTAAATTAGACAGACG+TGG - chr3_1:81048482-81048501 Msa0379680:CDS 45.0%
!! TGAACCCCACAATCTGGTTT+TGG + chr3_1:81048699-81048718 None:intergenic 45.0%
!! TGCCTGTAGAAGCACTTAAC+AGG + chr3_1:81049598-81049617 None:intergenic 45.0%
TCTACAGGCACAGAATACTG+TGG - chr3_1:81049608-81049627 Msa0379680:intron 45.0%
!! CGTTGGGAGAGTGTTATGAA+GGG + chr3_1:81049688-81049707 None:intergenic 45.0%
!! GTTAGCGGATTTGACTGAGT+CGG + chr3_1:81049747-81049766 None:intergenic 45.0%
TTCGTTTGCGAGGTTGTTGA+TGG - chr3_1:81050003-81050022 Msa0379680:intron 45.0%
!! GGCGGATCTGGATTTGTTTT+TGG - chr3_1:81050024-81050043 Msa0379680:intron 45.0%
! TTTGGAATCGGAGTTTAGCG+AGG - chr3_1:81050116-81050135 Msa0379680:CDS 45.0%
GGAAGATTAAAGCCATTGCG+AGG - chr3_1:81050167-81050186 Msa0379680:CDS 45.0%
AGTCATCATGATCCTCGCAA+TGG + chr3_1:81050182-81050201 None:intergenic 45.0%
! TGACTTGTAAACCGATGTCG+CGG - chr3_1:81050197-81050216 Msa0379680:CDS 45.0%
CACCGGAGGAAATTTCTCAT+CGG + chr3_1:81050257-81050276 None:intergenic 45.0%
GATGAGAAATTTCCTCCGGT+GGG - chr3_1:81050256-81050275 Msa0379680:CDS 45.0%
ATTCTTCTTCTCACACCCAC+CGG + chr3_1:81050274-81050293 None:intergenic 45.0%
!! AAATTATAAAATACAAAAAT+TGG - chr3_1:81048374-81048393 Msa0379680:CDS 5.0%
GATTCGCTGTCAGACTGGTA+TGG - chr3_1:81044894-81044913 Msa0379680:three_prime_UTR 50.0%
CTACAAGGATGAGCACAGTC+TGG - chr3_1:81045173-81045192 Msa0379680:three_prime_UTR 50.0%
CAGTCTGGTATTACTTCGGC+AGG - chr3_1:81045188-81045207 Msa0379680:three_prime_UTR 50.0%
GGTGTTTGAGTGGAGGGAAA+AGG + chr3_1:81046161-81046180 Msa0379690:intron 50.0%
GACAGCAGGATCAAGCACAA+TGG + chr3_1:81046240-81046259 Msa0379690:intron 50.0%
TGGATAACTTGAGCGACAGC+AGG + chr3_1:81046254-81046273 Msa0379690:intron 50.0%
! GTGCTAAAGGCGAAGAGCAT+AGG + chr3_1:81046613-81046632 Msa0379690:intron 50.0%
CGTTGTTGACATCACAGGTG+TGG - chr3_1:81046940-81046959 Msa0379680:intron 50.0%
! AATGTGGCGGCGCTTTGTTA+AGG + chr3_1:81047328-81047347 Msa0379690:intron 50.0%
TGTTTCCTTAACCAGTGCCC+CGG + chr3_1:81048016-81048035 None:intergenic 50.0%
AGGAGAAGCAACATCCCATG+TGG - chr3_1:81048411-81048430 Msa0379680:CDS 50.0%
ACTACGTGAACCCCACAATC+TGG + chr3_1:81048705-81048724 None:intergenic 50.0%
AGGTCACTGCTGTTAGACAG+CGG + chr3_1:81049092-81049111 None:intergenic 50.0%
!! GCGTTGGGAGAGTGTTATGA+AGG + chr3_1:81049689-81049708 None:intergenic 50.0%
CACCAAGCTTTCGCGTTCTT+CGG - chr3_1:81049710-81049729 Msa0379680:intron 50.0%
AAACTCGCAACGAGTGAACG+CGG + chr3_1:81049785-81049804 None:intergenic 50.0%
TTCACCTTGCTCAAGCGAAC+CGG - chr3_1:81049838-81049857 Msa0379680:CDS 50.0%
! AGATACGAAGCGGCGTCTTT+TGG - chr3_1:81049944-81049963 Msa0379680:CDS 50.0%
AACCTCGCAAACGAAGCCTT+AGG + chr3_1:81049998-81050017 None:intergenic 50.0%
! GTTTGCGAGGTTGTTGATGG+CGG - chr3_1:81050006-81050025 Msa0379680:intron 50.0%
CGATGAGAAATTTCCTCCGG+TGG - chr3_1:81050255-81050274 Msa0379680:CDS 50.0%
TTTCCACGTTGCCCGTCAAC+AGG + chr3_1:81044732-81044751 None:intergenic 55.0%
TCGCTGTCAGACTGGTATGG+TGG - chr3_1:81044897-81044916 Msa0379680:three_prime_UTR 55.0%
AGCGACTCTAGCGATCTGAG+AGG + chr3_1:81046530-81046549 Msa0379690:intron 55.0%
!! CGGTGTTTCTTGGCTTTGGC+AGG + chr3_1:81047363-81047382 Msa0379690:intron 55.0%
TTAACCAATGTCCGGGGCAC+TGG - chr3_1:81048002-81048021 Msa0379680:three_prime_UTR 55.0%
TTAACCAGTGCCCCGGACAT+TGG + chr3_1:81048009-81048028 None:intergenic 55.0%
!! AATGTCCGGGGCACTGGTTA+AGG - chr3_1:81048008-81048027 Msa0379680:three_prime_UTR 55.0%
! AAACAATGTCCCGGAGGCAC+CGG - chr3_1:81048140-81048159 Msa0379680:three_prime_UTR 55.0%
TCATGTTAACCGGTGCCTCC+GGG + chr3_1:81048152-81048171 None:intergenic 55.0%
GTCATGTTAACCGGTGCCTC+CGG + chr3_1:81048153-81048172 None:intergenic 55.0%
!! GCGAAAGCTTGGTGTGCGTT+GGG + chr3_1:81049704-81049723 None:intergenic 55.0%
GTCCGAAGAACGCGAAAGCT+TGG + chr3_1:81049715-81049734 None:intergenic 55.0%
!! ACGAGTTGACTCGGCGTTAG+CGG + chr3_1:81049762-81049781 None:intergenic 55.0%
! TGAACGCGGACGAGTTGACT+CGG + chr3_1:81049771-81049790 None:intergenic 55.0%
TCGCTTGAGCAAGGTGAACG+TGG + chr3_1:81049836-81049855 None:intergenic 55.0%
! GGCGTCGAGTGATTCAAGAG+CGG - chr3_1:81049880-81049899 Msa0379680:CDS 55.0%
!!! CGCTTTTTCGGCTTCGCCTA+AGG - chr3_1:81049979-81049998 Msa0379680:intron 55.0%
!! GAGGTTGTTGATGGCGGATC+TGG - chr3_1:81050012-81050031 Msa0379680:intron 55.0%
! GCAAAGCGTCACTTCGTACG+TGG + chr3_1:81050079-81050098 None:intergenic 55.0%
GTGGAATTCCGTGCATGCTG+AGG - chr3_1:81050146-81050165 Msa0379680:CDS 55.0%
CAAGCGATGTACCGCGACAT+CGG + chr3_1:81050211-81050230 None:intergenic 55.0%
! GAACCTGTTGACGGGCAACG+TGG - chr3_1:81044726-81044745 Msa0379680:three_prime_UTR 60.0%
!! CGCGAAAGCTTGGTGTGCGT+TGG + chr3_1:81049705-81049724 None:intergenic 60.0%
ACCTTGCTCAAGCGAACCGG+CGG - chr3_1:81049841-81049860 Msa0379680:CDS 60.0%
CGCCTAAGGCTTCGTTTGCG+AGG - chr3_1:81049993-81050012 Msa0379680:intron 60.0%
CTTCTTCTCACACCCACCGG+AGG + chr3_1:81050271-81050290 None:intergenic 60.0%
!! GCCGCCGGTTCGCTTGAGCA+AGG + chr3_1:81049845-81049864 None:intergenic 70.0%
TCAAGCGAACCGGCGGCGAG+AGG - chr3_1:81049848-81049867 Msa0379680:CDS 70.0%
GCGTTGTCTCCTCTCGCCGC+CGG + chr3_1:81049860-81049879 None:intergenic 70.0%
GGCGGCGAGAGGAGACAACG+CGG - chr3_1:81049859-81049878 Msa0379680:CDS 70.0%
AGCGTGGCGGCTGCCGTCTA+AGG + chr3_1:81050377-81050396 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 81044588 81050426 81044588 ID=Msa0379680;Name=Msa0379680
chr3_1 mRNA 81044588 81050426 81044588 ID=Msa0379680-mRNA-1;Parent=Msa0379680;Name=Msa0379680-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.6|0.66|1|0.2|0.33|6|1469|350
chr3_1 exon 81044588 81045418 81044588 ID=Msa0379680-mRNA-1:exon:20375;Parent=Msa0379680-mRNA-1
chr3_1 exon 81047538 81048561 81047538 ID=Msa0379680-mRNA-1:exon:20374;Parent=Msa0379680-mRNA-1
chr3_1 exon 81048894 81049077 81048894 ID=Msa0379680-mRNA-1:exon:20373;Parent=Msa0379680-mRNA-1
chr3_1 exon 81049805 81049985 81049805 ID=Msa0379680-mRNA-1:exon:20372;Parent=Msa0379680-mRNA-1
chr3_1 exon 81050113 81050300 81050113 ID=Msa0379680-mRNA-1:exon:20371;Parent=Msa0379680-mRNA-1
chr3_1 exon 81050313 81050426 81050313 ID=Msa0379680-mRNA-1:exon:20370;Parent=Msa0379680-mRNA-1
chr3_1 CDS 81050313 81050426 81050313 ID=Msa0379680-mRNA-1:cds;Parent=Msa0379680-mRNA-1
chr3_1 CDS 81050113 81050300 81050113 ID=Msa0379680-mRNA-1:cds;Parent=Msa0379680-mRNA-1
chr3_1 CDS 81049805 81049985 81049805 ID=Msa0379680-mRNA-1:cds;Parent=Msa0379680-mRNA-1
chr3_1 CDS 81048894 81049077 81048894 ID=Msa0379680-mRNA-1:cds;Parent=Msa0379680-mRNA-1
chr3_1 CDS 81048176 81048561 81048176 ID=Msa0379680-mRNA-1:cds;Parent=Msa0379680-mRNA-1
chr3_1 three_prime_UTR 81047538 81048175 81047538 ID=Msa0379680-mRNA-1:three_prime_utr;Parent=Msa0379680-mRNA-1
chr3_1 three_prime_UTR 81044588 81045418 81044588 ID=Msa0379680-mRNA-1:three_prime_utr;Parent=Msa0379680-mRNA-1
Gene Sequence

>Msa0379680

ATGGAGCTCAAACTATCGAAAACCTATTCTATAGAGATCACCGTTGGACATTCTACGGGTATTTTATCTTCAAATGGATATCATTATGGGGATCCTTCCCAAATTACTTTTGAAACTGCTCATACAGAACCTGTTGACGGGCAACGTGGAAAGTTGACTTCATGGAAGGACAATGATTTCCGAAAAATTGATCATTTTGAAGAATCAAATTCCGCTGTATCCACTAATCACCATATTCCAACAACTTCCAATTGGTGCATGGAGGCAATTGATCAAGAAATAACTAATTTTCAAGATTCGCTTAAAATTAGAAAGCTTACACTTGCAAGACTTTTCACTGCTCTTGATTTGTTATCACCCCAACATGATAAAAGAAAAAATCATACCGAAGAAGTTCTCAAGCTTTACACCGAGCTGATGAAGTTGGATCCAACACATTCTCTATACTACAAGGATGAGCACAGTCTGGTATTACTTCGGCAGATAACTTCATCTAGAGAGTCTTTACTACCATATTGCCACTACTATAAAGACGCATCAGAAACAAATACTAGTTATGTGTGTCTACGGTTACAAAATCTATCATTGTCACGAATGGGGTCTTTTGAGAATTTACTGTGGGTGCAAATGCTCGACCTTAGCCACAATGAACTTCGATCAATTGAAGGGTTGGAGGCCATGCAACTTCTATCTTGTTTAAATCTGAGTCATAATAAACTTGGTAGTTTTACTGCTTTGGGGCCTCTCAGATCGCTAGAGTCGCTTAAAGTGTTGAATATTTCTTGCAATGAGCTAGGCTCTCACTCAATTGACACGAGACGATACCTATGCTCTTCGCCTTTAGCACATACTGAAGTATTTGCCTGGGACCGTTTTGAAATCCTTTGTGGCAGTTATAGTGCCACTAAGTTTTGGGAAGCTTTCTTGATATTTGAAAGCTTGAACTTGACTGATTTGAACATATCAGGAAATGCAGTCGCTGATGAGAACTTCACGTCATTTATTGTCAAAGTTTTGCCTACTCTGAAGTGCTTAAATGATGAAGAGTTATAG
Protein sequence

>Msa0379680

MELKLSKTYSIEITVGHSTGILSSNGYHYGDPSQITFETAHTEPVDGQRGKLTSWKDNDFRKIDHFEESNSAVSTNHHIPTTSNWCMEAIDQEITNFQDSLKIRKLTLARLFTALDLLSPQHDKRKNHTEEVLKLYTELMKLDPTHSLYYKDEHSLVLLRQITSSRESLLPYCHYYKDASETNTSYVCLRLQNLSLSRMGSFENLLWVQMLDLSHNELRSIEGLEAMQLLSCLNLSHNKLGSFTALGPLRSLESLKVLNISCNELGSHSIDTRRYLCSSPLAHTEVFAWDRFEILCGSYSATKFWEAFLIFESLNLTDLNISGNAVADENFTSFIVKVLPTLKCLNDEEL*