AlfalfaGEDB | Msa0379680

M. sativa cultivar zhongmu-4 / Msa0379680

KEGG: K14050
GO: GO:0003008 GO:0003674 GO:0003824 GO:0004659 GO:0004661 GO:0004663 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0005968 GO:0006464 GO:0006807 GO:0007600 GO:0007601 GO:0008150 GO:0008152 GO:0008318 GO:0009987 GO:0010035 GO:0010038 GO:0010941 GO:0016020 GO:0016740 GO:0016765 GO:0017016 GO:0017137 GO:0018342 GO:0018344 GO:0019538 GO:0019899 GO:0031267 GO:0031974 GO:0031981 GO:0032501 GO:0032991 GO:0036211 GO:0042221 GO:0042981 GO:0043067 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043687 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050789 GO:0050794 GO:0050877 GO:0050896 GO:0050953 GO:0051020 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097354 GO:0140096 GO:1901564 GO:1902494 GO:1990234
PFAM: PF12799.10

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379680	XP_024635344.1	91.292	356	25	2	1	350	331	686	0.0	666

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379680	sp\|Q8VYB7\|PGTA1_ARATH	47.414	348	166	10	9	349	337	674	1.16e-84	272

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379680	A0A396J0G0	91.292	356	25	2	1	350	331	686	0.0	666

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0164350	Msa0379680	0.800857	1.183531e-48	-8.615850e-47
Msa0379680	Msa0429050	0.832555	8.841279e-56	-8.615850e-47
Msa0379680	Msa0747620	0.993960	1.677647e-203	-8.615850e-47
Msa0379680	Msa1208840	0.813949	1.975236e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379680	MtrunA17_Chr3g0132811	91.292	356	25	2	1	350	331	686	0.0	666

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0379680	AT4G24490.1	47.414	348	166	10	9	349	337	674	1.18e-85	272
Msa0379680	AT4G24490.2	47.414	348	166	10	9	349	337	674	1.18e-85	272
Msa0379680	AT5G41820.2	40.563	355	178	12	7	350	353	685	6.29e-60	204
Msa0379680	AT5G41820.1	40.563	355	178	12	7	350	353	685	6.29e-60	204

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Find 142 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATGATAAGCGTGG+CGG	0.702036	3_1:+81044605	None:intergenic
AAACTCGCAACGAGTGAACG+CGG	0.681953	3_1:+81045210	Msa0379690:CDS
AAATCTATCATTGTCACGAA+TGG	0.496579	3_1:-81048963	Msa0379680:CDS
AAATTCAACTTGACCTTAGA+CGG	0.494785	3_1:-81044631	Msa0379680:three_prime_UTR
AAATTTGTGTACCCTAGTGT+TGG	0.542240	3_1:+81047740	Msa0379690:three_prime_UTR
AACAACTTCCAATTGGTGCA+TGG	0.563161	3_1:-81050153	Msa0379680:CDS
AACACATTCTCTATACTACA+AGG	0.631342	3_1:-81049834	Msa0379680:CDS
AACCTCGCAAACGAAGCCTT+AGG	0.661102	3_1:+81044997	Msa0379690:CDS
AACCTGTTAAGTGCTTCTAC+AGG	0.580757	3_1:-81045399	Msa0379680:three_prime_UTR
AACGGTGATCTCTATAGAAT+AGG	0.511032	3_1:+81050382	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTCAAAAGTAATTTGGGA+AGG	+	chr3_1:81044684-81044703	None:intergenic	30.0%
CACACACTTCAAAAGTAATT+TGG	+	chr3_1:81044689-81044708	None:intergenic	30.0%
AATTGGAAGTTGTTGGAATA+TGG	+	chr3_1:81044833-81044852	Msa0379690:CDS	30.0%
ATATTCCAACAACTTCCAAT+TGG	-	chr3_1:81044832-81044851	Msa0379680:three_prime_UTR	30.0%
CCGATAAATGTATTGCTTTA+TGG	-	chr3_1:81044922-81044941	Msa0379680:three_prime_UTR	30.0%
ATATGGGAAAAGAACTTACT+AGG	+	chr3_1:81044960-81044979	Msa0379690:CDS	30.0%
TTGTAGTATAGAGAATGTGT+TGG	+	chr3_1:81045159-81045178	Msa0379690:intron	30.0%
AACACATTCTCTATACTACA+AGG	-	chr3_1:81045158-81045177	Msa0379680:three_prime_UTR	30.0%
TCTGGATATGAGAAAAAATG+TGG	-	chr3_1:81045310-81045329	Msa0379680:three_prime_UTR	30.0%
CTGGTTATGAGAAAAAAAAG+TGG	-	chr3_1:81045696-81045715	Msa0379680:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	81044588	81050426	81044588	ID=Msa0379680;Name=Msa0379680
chr3_1	mRNA	81044588	81050426	81044588	ID=Msa0379680-mRNA-1;Parent=Msa0379680;Name=Msa0379680-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|0.6\|0.66\|1\|0.2\|0.33\|6\|1469\|350
chr3_1	exon	81044588	81045418	81044588	ID=Msa0379680-mRNA-1:exon:20375;Parent=Msa0379680-mRNA-1
chr3_1	exon	81047538	81048561	81047538	ID=Msa0379680-mRNA-1:exon:20374;Parent=Msa0379680-mRNA-1
chr3_1	exon	81048894	81049077	81048894	ID=Msa0379680-mRNA-1:exon:20373;Parent=Msa0379680-mRNA-1
chr3_1	exon	81049805	81049985	81049805	ID=Msa0379680-mRNA-1:exon:20372;Parent=Msa0379680-mRNA-1
chr3_1	exon	81050113	81050300	81050113	ID=Msa0379680-mRNA-1:exon:20371;Parent=Msa0379680-mRNA-1
chr3_1	exon	81050313	81050426	81050313	ID=Msa0379680-mRNA-1:exon:20370;Parent=Msa0379680-mRNA-1
chr3_1	CDS	81050313	81050426	81050313	ID=Msa0379680-mRNA-1:cds;Parent=Msa0379680-mRNA-1
chr3_1	CDS	81050113	81050300	81050113	ID=Msa0379680-mRNA-1:cds;Parent=Msa0379680-mRNA-1
chr3_1	CDS	81049805	81049985	81049805	ID=Msa0379680-mRNA-1:cds;Parent=Msa0379680-mRNA-1
chr3_1	CDS	81048894	81049077	81048894	ID=Msa0379680-mRNA-1:cds;Parent=Msa0379680-mRNA-1
chr3_1	CDS	81048176	81048561	81048176	ID=Msa0379680-mRNA-1:cds;Parent=Msa0379680-mRNA-1
chr3_1	three_prime_UTR	81047538	81048175	81047538	ID=Msa0379680-mRNA-1:three_prime_utr;Parent=Msa0379680-mRNA-1
chr3_1	three_prime_UTR	81044588	81045418	81044588	ID=Msa0379680-mRNA-1:three_prime_utr;Parent=Msa0379680-mRNA-1

Gene Sequence

>Msa0379680

ATGGAGCTCAAACTATCGAAAACCTATTCTATAGAGATCACCGTTGGACATTCTACGGGTATTTTATCTTCAAATGGATATCATTATGGGGATCCTTCCCAAATTACTTTTGAAACTGCTCATACAGAACCTGTTGACGGGCAACGTGGAAAGTTGACTTCATGGAAGGACAATGATTTCCGAAAAATTGATCATTTTGAAGAATCAAATTCCGCTGTATCCACTAATCACCATATTCCAACAACTTCCAATTGGTGCATGGAGGCAATTGATCAAGAAATAACTAATTTTCAAGATTCGCTTAAAATTAGAAAGCTTACACTTGCAAGACTTTTCACTGCTCTTGATTTGTTATCACCCCAACATGATAAAAGAAAAAATCATACCGAAGAAGTTCTCAAGCTTTACACCGAGCTGATGAAGTTGGATCCAACACATTCTCTATACTACAAGGATGAGCACAGTCTGGTATTACTTCGGCAGATAACTTCATCTAGAGAGTCTTTACTACCATATTGCCACTACTATAAAGACGCATCAGAAACAAATACTAGTTATGTGTGTCTACGGTTACAAAATCTATCATTGTCACGAATGGGGTCTTTTGAGAATTTACTGTGGGTGCAAATGCTCGACCTTAGCCACAATGAACTTCGATCAATTGAAGGGTTGGAGGCCATGCAACTTCTATCTTGTTTAAATCTGAGTCATAATAAACTTGGTAGTTTTACTGCTTTGGGGCCTCTCAGATCGCTAGAGTCGCTTAAAGTGTTGAATATTTCTTGCAATGAGCTAGGCTCTCACTCAATTGACACGAGACGATACCTATGCTCTTCGCCTTTAGCACATACTGAAGTATTTGCCTGGGACCGTTTTGAAATCCTTTGTGGCAGTTATAGTGCCACTAAGTTTTGGGAAGCTTTCTTGATATTTGAAAGCTTGAACTTGACTGATTTGAACATATCAGGAAATGCAGTCGCTGATGAGAACTTCACGTCATTTATTGTCAAAGTTTTGCCTACTCTGAAGTGCTTAAATGATGAAGAGTTATAG

Protein sequence

>Msa0379680

MELKLSKTYSIEITVGHSTGILSSNGYHYGDPSQITFETAHTEPVDGQRGKLTSWKDNDFRKIDHFEESNSAVSTNHHIPTTSNWCMEAIDQEITNFQDSLKIRKLTLARLFTALDLLSPQHDKRKNHTEEVLKLYTELMKLDPTHSLYYKDEHSLVLLRQITSSRESLLPYCHYYKDASETNTSYVCLRLQNLSLSRMGSFENLLWVQMLDLSHNELRSIEGLEAMQLLSCLNLSHNKLGSFTALGPLRSLESLKVLNISCNELGSHSIDTRRYLCSSPLAHTEVFAWDRFEILCGSYSATKFWEAFLIFESLNLTDLNISGNAVADENFTSFIVKVLPTLKCLNDEEL*