AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0747620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0747620 MtrunA17_Chr3g0132811 91.292 356 25 2 1 350 331 686 0.0 666
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0747620 AT4G24490.1 47.414 348 166 10 9 349 337 674 1.18e-85 272
Msa0747620 AT4G24490.2 47.414 348 166 10 9 349 337 674 1.18e-85 272
Msa0747620 AT5G41820.2 40.563 355 178 12 7 350 353 685 6.29e-60 204
Msa0747620 AT5G41820.1 40.563 355 178 12 7 350 353 685 6.29e-60 204

Find 142 sgRNAs with CRISPR-Local

Find 336 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACACACTTCAAAAGTAATT+TGG 0.107140 5_2:+420899 None:intergenic
TTGCACCTTCATTGCAAATT+TGG 0.129365 5_2:+418518 None:intergenic
TCTTCAAATGGATATCATTA+TGG 0.162505 5_2:-420931 Msa0747620:CDS
ATGATAAGTCTTATGTTAAA+AGG 0.182142 5_2:-418444 Msa0747620:three_prime_UTR
CATGTCATTTCGGTGTTTCT+TGG 0.193148 5_2:+418214 Msa0747630:three_prime_UTR
TAGTGACCTTGGTTTGTTTA+TGG 0.194176 5_2:-418748 Msa0747620:three_prime_UTR
AGATACGAAGCGGCGTCTTT+TGG 0.244593 5_2:-415641 Msa0747620:three_prime_UTR
GTTATAGTGCCACTAAGTTT+TGG 0.255391 5_2:-418906 Msa0747620:CDS
GATACATAATTTAGTGTTGA+TGG 0.263929 5_2:+418580 None:intergenic
TCACTCATTGTTTAAGATAA+AGG 0.264779 5_2:-418695 Msa0747620:three_prime_UTR
TTCTGTAACTGTTTAACTTT+TGG 0.270128 5_2:-418668 Msa0747620:three_prime_UTR
CCCTAGTGTTGGTTTCTACT+TGG 0.278297 5_2:+418343 Msa0747630:three_prime_UTR
TAGTGATGTATAACAAATTA+TGG 0.290086 5_2:-418379 Msa0747620:three_prime_UTR
CACCAAGCTTTCGCGTTCTT+CGG 0.307624 5_2:-415875 Msa0747620:three_prime_UTR
TTGACTGATTTGAACATATC+AGG 0.309395 5_2:-418853 Msa0747620:CDS
GGAAGCAAAGAAAGCTTATA+AGG 0.314616 5_2:+415937 Msa0747630:CDS
CTTCAAATGGATATCATTAT+GGG 0.330697 5_2:-420930 Msa0747620:CDS
AATTGGAAGTTGTTGGAATA+TGG 0.336661 5_2:+420755 None:intergenic
GTGTTATGAAGGGAAGAAAA+TGG 0.346267 5_2:+415910 Msa0747630:CDS
CGGTGTTTCTTGGCTTTGGC+AGG 0.347122 5_2:+418224 Msa0747630:three_prime_UTR
ACACACTTCAAAAGTAATTT+GGG 0.361270 5_2:+420900 None:intergenic
TTCGTTTGCGAGGTTGTTGA+TGG 0.363091 5_2:-415582 Msa0747620:three_prime_UTR
ATTTCGGTGTTTCTTGGCTT+TGG 0.368482 5_2:+418220 Msa0747630:three_prime_UTR
GCTATGGCACCATGTCATTT+CGG 0.393391 5_2:+418204 Msa0747630:three_prime_UTR
TCTTTATAGTAGTGGCAATA+TGG 0.395093 5_2:+419620 None:intergenic
GAAGATATACTTTATGAAGA+TGG 0.403250 5_2:-418719 Msa0747620:three_prime_UTR
CTTTACCAAATTTGCAATGA+AGG 0.413126 5_2:-418523 Msa0747620:three_prime_UTR
ATGCACCAATTGGAAGTTGT+TGG 0.414123 5_2:+420748 None:intergenic
TTTCCACGTTGCCCGTCAAC+AGG 0.415381 5_2:+420856 None:intergenic
TGCCTGTAGAAGCACTTAAC+AGG 0.416791 5_2:+415990 Msa0747630:CDS
AATCTATCATTGTCACGAAT+GGG 0.417993 5_2:-419554 Msa0747620:CDS
AATTGCCTCCATGCACCAAT+TGG 0.435270 5_2:+420738 None:intergenic
GAGGTTGTTGATGGCGGATC+TGG 0.441588 5_2:-415573 Msa0747620:three_prime_UTR
GATCACCGTTGGACATTCTA+CGG 0.445219 5_2:-420962 Msa0747620:CDS
GTCCGAAGAACGCGAAAGCT+TGG 0.448178 5_2:+415873 Msa0747630:CDS
GCGAAAGCTTGGTGTGCGTT+GGG 0.450050 5_2:+415884 Msa0747630:CDS
CACATACTGAAGTATTTGCC+TGG 0.450894 5_2:-418954 Msa0747620:CDS
GAAAGCTTCCCAAAACTTAG+TGG 0.451020 5_2:+418897 None:intergenic
CGCGAAAGCTTGGTGTGCGT+TGG 0.456259 5_2:+415883 Msa0747630:CDS
AGCGTGGCGGCTGCCGTCTA+AGG 0.458110 5_2:+415211 None:intergenic
CTTCATTGCAAATTTGGTAA+AGG 0.458553 5_2:+418524 None:intergenic
TTATAAGGAAGCTCATGAAT+TGG 0.465517 5_2:+415952 Msa0747630:CDS
TTCACCTTGCTCAAGCGAAC+CGG 0.466250 5_2:-415747 Msa0747620:three_prime_UTR
GTAAAGCTTGAGAACTTCTT+CGG 0.467812 5_2:+420473 None:intergenic
GAAAGGTGTTTCATTAGCTA+TGG 0.469154 5_2:+418188 Msa0747630:three_prime_UTR
AATATTTCTTGCAATGAGCT+AGG 0.472390 5_2:-419024 Msa0747620:CDS
TGTTGGAATATGGTGATTAG+TGG 0.473545 5_2:+420765 None:intergenic
GCTATGATTCTCGATCTTCA+AGG 0.478244 5_2:+415671 Msa0747630:CDS
AATGAACTTCGATCAATTGA+AGG 0.480415 5_2:-419485 Msa0747620:intron
CGATGAGAAATTTCCTCCGG+TGG 0.481698 5_2:-415330 Msa0747620:three_prime_UTR
ATATTCCAACAACTTCCAAT+TGG 0.483856 5_2:-420753 Msa0747620:CDS
TGATAAGTCTTATGTTAAAA+GGG 0.488415 5_2:-418443 Msa0747620:three_prime_UTR
AACGTGGAAAGTTGACTTCA+TGG 0.490403 5_2:-420843 Msa0747620:CDS
ATCGAAGTTCATTGTGGCTA+AGG 0.491541 5_2:+419495 None:intergenic
TATTGATACTATGATTGCTC+TGG 0.492519 5_2:-418620 Msa0747620:three_prime_UTR
AAATTCAACTTGACCTTAGA+CGG 0.494785 5_2:-415224 Msa0747620:three_prime_UTR
AGGAGTGAGATTTGAACAAA+GGG 0.495443 5_2:+418544 None:intergenic
AAATCTATCATTGTCACGAA+TGG 0.496579 5_2:-419555 Msa0747620:CDS
AATGTGGCGGCGCTTTGTTA+AGG 0.496636 5_2:+418259 Msa0747630:three_prime_UTR
TTCCGATGAGAAATTTCCTC+CGG 0.500080 5_2:-415333 Msa0747620:three_prime_UTR
TTACACCGAGCTGATGAAGT+TGG 0.509117 5_2:-420454 Msa0747620:CDS
ATGAAGAGTTATAGTGACCT+TGG 0.509294 5_2:-418759 Msa0747620:exon
AACGGTGATCTCTATAGAAT+AGG 0.511032 5_2:+420975 None:intergenic
AATCTGAGTCATAATAAACT+TGG 0.514137 5_2:-419099 Msa0747620:CDS
ACGAGTTGACTCGGCGTTAG+CGG 0.514403 5_2:+415826 Msa0747630:CDS
CTGATGCGTCTTTATAGTAG+TGG 0.518229 5_2:+419612 None:intergenic
AAGGATTTCAAAACGGTCCC+AGG 0.521246 5_2:+418936 None:intergenic
CGCCTAAGGCTTCGTTTGCG+AGG 0.524088 5_2:-415592 Msa0747620:three_prime_UTR
CAGCAATGTAACAAAAGATA+CGG 0.526619 5_2:+418127 Msa0747630:intron
AATACTTCAGTATGTGCTAA+AGG 0.531773 5_2:+418961 None:intergenic
CTCATACAGAACCTGTTGAC+GGG 0.537445 5_2:-420867 Msa0747620:CDS
TTGGTCGTTGTTGACATCAC+AGG 0.542052 5_2:-418649 Msa0747620:three_prime_UTR
AAATTTGTGTACCCTAGTGT+TGG 0.542240 5_2:+418332 Msa0747630:three_prime_UTR
TATTGAGGAAGAATGTATGT+TGG 0.544110 5_2:+418166 Msa0747630:three_prime_UTR
CTACAAGGATGAGCACAGTC+TGG 0.544150 5_2:-420412 Msa0747620:CDS
CAGTCTGGTATTACTTCGGC+AGG 0.545028 5_2:-420397 Msa0747620:intron
TCATTTAAGCACTTCAGAGT+AGG 0.549730 5_2:+418781 None:intergenic
GTGCTAAAGGCGAAGAGCAT+AGG 0.549796 5_2:+418974 None:intergenic
ATACTAGTTATGTGTGTCTA+CGG 0.552144 5_2:-419583 Msa0747620:CDS
AAGGAGTGAGATTTGAACAA+AGG 0.552451 5_2:+418543 None:intergenic
ATTCTTCTTCTCACACCCAC+CGG 0.552726 5_2:+415314 None:intergenic
TTAATCTTCCTCAGCATGCA+CGG 0.553368 5_2:+415431 Msa0747630:CDS
TAAACAAGATAGAAGTTGCA+TGG 0.554228 5_2:+419122 None:intergenic
GCGTTGTCTCCTCTCGCCGC+CGG 0.558332 5_2:+415728 Msa0747630:CDS
GCGTTGGGAGAGTGTTATGA+AGG 0.558916 5_2:+415899 Msa0747630:CDS
AACAACTTCCAATTGGTGCA+TGG 0.563161 5_2:-420746 Msa0747620:CDS
GCTCATACAGAACCTGTTGA+CGG 0.564601 5_2:-420868 Msa0747620:CDS
TGAACGCGGACGAGTTGACT+CGG 0.566518 5_2:+415817 Msa0747630:CDS
CAAGCGATGTACCGCGACAT+CGG 0.569247 5_2:+415377 Msa0747630:CDS
TGCCACAAAGGATTTCAAAA+CGG 0.571179 5_2:+418929 None:intergenic
TGAAGGGAAGAAAATGGATG+AGG 0.575977 5_2:+415916 Msa0747630:CDS
AACCTGTTAAGTGCTTCTAC+AGG 0.580757 5_2:-415992 Msa0747620:three_prime_UTR
AGGAAGAATGTATGTTGGAA+AGG 0.594020 5_2:+418171 Msa0747630:three_prime_UTR
ATCACCGTTGGACATTCTAC+GGG 0.595563 5_2:-420961 Msa0747620:CDS
GCCGCCGGTTCGCTTGAGCA+AGG 0.596105 5_2:+415743 Msa0747630:intron
TTTGGAATCGGAGTTTAGCG+AGG 0.596238 5_2:-415469 Msa0747620:three_prime_UTR
AGCACAGTCTGGTATTACTT+CGG 0.602433 5_2:-420401 Msa0747620:CDS
GTTTGCGAGGTTGTTGATGG+CGG 0.604157 5_2:-415579 Msa0747620:three_prime_UTR
TGGATCCAACTTCATCAGCT+CGG 0.609055 5_2:+420449 None:intergenic
TCAAGCGAACCGGCGGCGAG+AGG 0.609088 5_2:-415737 Msa0747620:three_prime_UTR
ACATACTGAAGTATTTGCCT+GGG 0.609573 5_2:-418953 Msa0747620:CDS
ATCTATCATTGTCACGAATG+GGG 0.611320 5_2:-419553 Msa0747620:CDS
TTTATACCATAAACAAACCA+AGG 0.611364 5_2:+418742 None:intergenic
GCAGTCTTGAACTTCTATTG+AGG 0.611422 5_2:+418151 Msa0747630:exon
ACTTCAAAAGTAATTTGGGA+AGG 0.614137 5_2:+420904 None:intergenic
CAATTGATCGAAGTTCATTG+TGG 0.616533 5_2:+419489 None:intergenic
GATGAGAAATTTCCTCCGGT+GGG 0.617209 5_2:-415329 Msa0747620:three_prime_UTR
CAAGAAACACCGAAATGACA+TGG 0.618215 5_2:-418213 Msa0747620:three_prime_UTR
ACCAAGTAGAAACCAACACT+AGG 0.619181 5_2:-418344 Msa0747620:three_prime_UTR
TGGAAAGTTGACTTCATGGA+AGG 0.621972 5_2:-420839 Msa0747620:CDS
CACCGGAGGAAATTTCTCAT+CGG 0.622346 5_2:+415331 None:intergenic
ACCTTGCTCAAGCGAACCGG+CGG 0.627328 5_2:-415744 Msa0747620:three_prime_UTR
TATTCTATAGAGATCACCGT+TGG 0.629388 5_2:-420973 Msa0747620:CDS
AACACATTCTCTATACTACA+AGG 0.631342 5_2:-420427 Msa0747620:CDS
CCAAGTAGAAACCAACACTA+GGG 0.636091 5_2:-418343 Msa0747620:three_prime_UTR
CTTCTTCTCACACCCACCGG+AGG 0.636563 5_2:+415317 None:intergenic
AGTCATCATGATCCTCGCAA+TGG 0.640456 5_2:+415406 Msa0747630:CDS
TTCAAATGGATATCATTATG+GGG 0.641853 5_2:-420929 Msa0747620:CDS
GCAAAGCGTCACTTCGTACG+TGG 0.647924 5_2:+415509 Msa0747630:intron
TTGTAGTATAGAGAATGTGT+TGG 0.648966 5_2:+420429 None:intergenic
TCGCTTGAGCAAGGTGAACG+TGG 0.649304 5_2:+415752 Msa0747630:intron
GATGTAAGAAGCAAATGTGG+CGG 0.650810 5_2:+418246 Msa0747630:three_prime_UTR
CGTTGGGAGAGTGTTATGAA+GGG 0.659064 5_2:+415900 Msa0747630:CDS
TGGCACTATAACTGCCACAA+AGG 0.659141 5_2:+418917 None:intergenic
GTGGAATTCCGTGCATGCTG+AGG 0.659142 5_2:-415439 Msa0747620:three_prime_UTR
AACCTCGCAAACGAAGCCTT+AGG 0.661102 5_2:+415590 Msa0747630:CDS
CAGGATGTAAGAAGCAAATG+TGG 0.661856 5_2:+418243 Msa0747630:three_prime_UTR
CGTTGTTGACATCACAGGTG+TGG 0.664239 5_2:-418644 Msa0747620:three_prime_UTR
GTTAGCGGATTTGACTGAGT+CGG 0.668658 5_2:+415841 Msa0747630:CDS
AGCTTTGAGAAGATACGAAG+CGG 0.671113 5_2:-415651 Msa0747620:three_prime_UTR
AAACTCGCAACGAGTGAACG+CGG 0.681953 5_2:+415803 Msa0747630:CDS
AACTTCCAATTGGTGCATGG+AGG 0.682685 5_2:-420743 Msa0747620:CDS
AATACCCGTAGAATGTCCAA+CGG 0.701251 5_2:+420957 None:intergenic
AAACAAAATGATAAGCGTGG+CGG 0.702036 5_2:+415198 None:intergenic
GGAAGATTAAAGCCATTGCG+AGG 0.704504 5_2:-415418 Msa0747620:three_prime_UTR
GAACCTGTTGACGGGCAACG+TGG 0.708889 5_2:-420859 Msa0747620:CDS
ATGGTGATTAGTGGATACAG+CGG 0.711113 5_2:+420774 None:intergenic
TGACTTGTAAACCGATGTCG+CGG 0.717200 5_2:-415388 Msa0747620:three_prime_UTR
GGCGTCGAGTGATTCAAGAG+CGG 0.721407 5_2:-415705 Msa0747620:three_prime_UTR
TCTACAGGCACAGAATACTG+TGG 0.738815 5_2:-415977 Msa0747620:three_prime_UTR
AGCGACTCTAGCGATCTGAG+AGG 0.759932 5_2:+419057 None:intergenic
GGCGGCGAGAGGAGACAACG+CGG 0.761382 5_2:-415726 Msa0747620:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTTAATGAATTTTC+TGG - chr5_2:415843-415862 Msa0747620:three_prime_UTR 10.0%
!! TGAACAAATAAAATTATTTA+TGG + chr5_2:416492-416511 Msa0747630:intron 10.0%
!!! TATTTTTTTTTAGAGATTAA+AGG + chr5_2:418409-418428 Msa0747630:three_prime_UTR 10.0%
!! GTTATATAAATGTAATAAAA+GGG + chr5_2:419573-419592 None:intergenic 10.0%
!! TGTTATATAAATGTAATAAA+AGG + chr5_2:419574-419593 None:intergenic 10.0%
!!! ATTTTTTCTTTTATCATGTT+GGG + chr5_2:415681-415700 Msa0747630:CDS 15.0%
!! ACAAATAAAATTATTTATGG+TGG + chr5_2:416489-416508 Msa0747630:intron 15.0%
!!! TTTTTTTTTTCATGAACTTT+GGG + chr5_2:418385-418404 Msa0747630:three_prime_UTR 15.0%
!!! TTTTTTTTTTTCATGAACTT+TGG + chr5_2:418386-418405 Msa0747630:three_prime_UTR 15.0%
!!! CTTCAAAATGATCAATTTTT+CGG + chr5_2:415375-415394 Msa0747630:CDS 20.0%
!! GAAATATAACTGGAAAATAT+GGG + chr5_2:415569-415588 Msa0747630:CDS 20.0%
!! TGAAATATAACTGGAAAATA+TGG + chr5_2:415570-415589 Msa0747630:CDS 20.0%
!!! TTTTTTCTTTTATCATGTTG+GGG + chr5_2:415680-415699 Msa0747630:CDS 20.0%
!!! GATTTTTTCTTTTATCATGT+TGG + chr5_2:415682-415701 Msa0747630:CDS 20.0%
!! TTTACCAAAAAATTAGATGA+TGG - chr5_2:416120-416139 Msa0747620:intron 20.0%
!!! GAGAATATTTTTGAGTTAAT+GGG - chr5_2:416142-416161 Msa0747620:intron 20.0%
!!! ATAAAATTATTTATGGTGGA+AGG + chr5_2:416485-416504 Msa0747630:intron 20.0%
!!! TTTTATTTGTTCATGTTATG+AGG - chr5_2:416499-416518 Msa0747620:intron 20.0%
!! ATAATAACGCTAAATTATAG+TGG + chr5_2:416776-416795 Msa0747630:intron 20.0%
!! TAATTTAGCGTTATTATTAC+TGG - chr5_2:416779-416798 Msa0747620:intron 20.0%
!! AATTTAGCGTTATTATTACT+GGG - chr5_2:416780-416799 Msa0747620:intron 20.0%
!! AATGAGAATATTGATGTTAA+TGG - chr5_2:416889-416908 Msa0747620:intron 20.0%
!!! ATGATAAGTCTTATGTTAAA+AGG - chr5_2:417734-417753 Msa0747620:intron 20.0%
!!! TGATAAGTCTTATGTTAAAA+GGG - chr5_2:417735-417754 Msa0747620:intron 20.0%
!! TAGTGATGTATAACAAATTA+TGG - chr5_2:417799-417818 Msa0747620:intron 20.0%
!!! TTTTTTTCATCAACAACAAT+AGG + chr5_2:418128-418147 Msa0747630:intron 20.0%
!!! TTATAATTTGCCAAATTTCA+AGG + chr5_2:418956-418975 None:intergenic 20.0%
!!! TTTTTGAAAGAGAATATTAC+TGG - chr5_2:419036-419055 Msa0747620:CDS 20.0%
!! AAAATAGACAAATTCAAACT+TGG - chr5_2:419158-419177 Msa0747620:intron 20.0%
!! GCTATTTACAGATTTATTAT+AGG + chr5_2:419392-419411 None:intergenic 20.0%
!!! ACGTGTTAATTTTATAAATG+TGG - chr5_2:419533-419552 Msa0747620:CDS 20.0%
!!! CGTGTTAATTTTATAAATGT+GGG - chr5_2:419534-419553 Msa0747620:CDS 20.0%
!! TGCTAAATTAAAAGACTTAT+GGG + chr5_2:420089-420108 None:intergenic 20.0%
!! ATGCTAAATTAAAAGACTTA+TGG + chr5_2:420090-420109 None:intergenic 20.0%
! TCTTCAAATGGATATCATTA+TGG - chr5_2:415247-415266 Msa0747620:three_prime_UTR 25.0%
! CTTCAAATGGATATCATTAT+GGG - chr5_2:415248-415267 Msa0747620:three_prime_UTR 25.0%
! TTCAAATGGATATCATTATG+GGG - chr5_2:415249-415268 Msa0747620:three_prime_UTR 25.0%
! ACACACTTCAAAAGTAATTT+GGG + chr5_2:415281-415300 None:intergenic 25.0%
! CCATAAAGCAATACATTTAT+CGG + chr5_2:415518-415537 Msa0747630:intron 25.0%
! GCATCAAATTGAAATATAAC+TGG + chr5_2:415579-415598 Msa0747630:CDS 25.0%
!!! GATTTTCTGTGATTTTAATC+TGG - chr5_2:415885-415904 Msa0747620:three_prime_UTR 25.0%
! GAAAAAATGTGTTAACAAGT+TGG - chr5_2:415959-415978 Msa0747620:three_prime_UTR 25.0%
! CTAAGTCAAAGAATAAGATA+AGG - chr5_2:415991-416010 Msa0747620:three_prime_UTR 25.0%
! AAGATAAGGAATGAAAGAAA+TGG - chr5_2:416005-416024 Msa0747620:intron 25.0%
! AGAAAAGTTTATGCTGAAAT+AGG - chr5_2:416074-416093 Msa0747620:intron 25.0%
!!! TTCTCCATCATCTAATTTTT+TGG + chr5_2:416127-416146 Msa0747630:intron 25.0%
!!! GGAGAATATTTTTGAGTTAA+TGG - chr5_2:416141-416160 Msa0747620:intron 25.0%
! CAATATTCTCATTAAAGCTT+GGG + chr5_2:416882-416901 Msa0747630:intron 25.0%
! TCAATATTCTCATTAAAGCT+TGG + chr5_2:416883-416902 Msa0747630:intron 25.0%
! AATCTGAGTCATAATAAACT+TGG - chr5_2:417079-417098 Msa0747620:intron 25.0%
! TTTATACCATAAACAAACCA+AGG + chr5_2:417439-417458 Msa0747630:intron 25.0%
! GAAGATATACTTTATGAAGA+TGG - chr5_2:417459-417478 Msa0747620:intron 25.0%
!! TCACTCATTGTTTAAGATAA+AGG - chr5_2:417483-417502 Msa0747620:intron 25.0%
!!! TTCTGTAACTGTTTAACTTT+TGG - chr5_2:417510-417529 Msa0747620:intron 25.0%
!! GATACATAATTTAGTGTTGA+TGG + chr5_2:417601-417620 Msa0747630:intron 25.0%
!!! GTGAAGACTTGTTTTTATTA+TGG - chr5_2:418345-418364 Msa0747620:three_prime_UTR 25.0%
! ATACAATGCTTAAACTGTTT+AGG - chr5_2:418459-418478 Msa0747620:three_prime_UTR 25.0%
!!! TTTAGCTTTTGATTCACAAA+TGG + chr5_2:418560-418579 None:intergenic 25.0%
!! AAACAAAAGTGTGAAAATCT+AGG - chr5_2:419113-419132 Msa0747620:CDS 25.0%
! GGATGTCAATATTGAAAATT+TGG + chr5_2:419186-419205 None:intergenic 25.0%
! TGATCATCATCTAAAAATGT+TGG + chr5_2:419221-419240 None:intergenic 25.0%
!!! TGAACTCTATTTTCTTGTTT+TGG - chr5_2:419419-419438 Msa0747620:intron 25.0%
!! ATAACATTTTACCAAACGAA+AGG - chr5_2:419588-419607 Msa0747620:CDS 25.0%
!! ATTTTTAATCTCCTTTCGTT+TGG + chr5_2:419602-419621 None:intergenic 25.0%
!!! AGGACATTTTTTGCTAAAAT+TGG + chr5_2:419806-419825 None:intergenic 25.0%
!! TGAAGTTAAGTTGTGTTAAA+AGG + chr5_2:419829-419848 None:intergenic 25.0%
! GAAATATTTATTCTTCCTTC+TGG + chr5_2:419961-419980 None:intergenic 25.0%
! AAATTTCTCATCGGAAAAAA+TGG + chr5_2:420841-420860 None:intergenic 25.0%
! TAAAAACAAAATGATAAGCG+TGG + chr5_2:420986-421005 None:intergenic 25.0%
! ACGGGTATTTTATCTTCAAA+TGG - chr5_2:415235-415254 Msa0747620:three_prime_UTR 30.0%
ACTTCAAAAGTAATTTGGGA+AGG + chr5_2:415277-415296 None:intergenic 30.0%
CACACACTTCAAAAGTAATT+TGG + chr5_2:415282-415301 None:intergenic 30.0%
AATTGGAAGTTGTTGGAATA+TGG + chr5_2:415426-415445 Msa0747630:CDS 30.0%
ATATTCCAACAACTTCCAAT+TGG - chr5_2:415425-415444 Msa0747620:three_prime_UTR 30.0%
CCGATAAATGTATTGCTTTA+TGG - chr5_2:415515-415534 Msa0747620:three_prime_UTR 30.0%
ATATGGGAAAAGAACTTACT+AGG + chr5_2:415553-415572 Msa0747630:CDS 30.0%
TTGTAGTATAGAGAATGTGT+TGG + chr5_2:415752-415771 Msa0747630:intron 30.0%
AACACATTCTCTATACTACA+AGG - chr5_2:415751-415770 Msa0747620:three_prime_UTR 30.0%
TCTGGATATGAGAAAAAATG+TGG - chr5_2:415903-415922 Msa0747620:three_prime_UTR 30.0%
CTGGTTATGAGAAAAAAAAG+TGG - chr5_2:416289-416308 Msa0747620:intron 30.0%
TCTTTATAGTAGTGGCAATA+TGG + chr5_2:416561-416580 Msa0747630:intron 30.0%
ATACTAGTTATGTGTGTCTA+CGG - chr5_2:416595-416614 Msa0747620:intron 30.0%
AAATCTATCATTGTCACGAA+TGG - chr5_2:416623-416642 Msa0747620:intron 30.0%
AATCTATCATTGTCACGAAT+GGG - chr5_2:416624-416643 Msa0747620:intron 30.0%
!! GTCTTTTGAGAATTTACTGT+GGG - chr5_2:416647-416666 Msa0747620:intron 30.0%
AATGAACTTCGATCAATTGA+AGG - chr5_2:416693-416712 Msa0747620:intron 30.0%
AAATTATAGTGGTGTTTGAG+TGG + chr5_2:416765-416784 Msa0747630:intron 30.0%
CTAAAATTGCCAAAAGTGAT+AGG + chr5_2:416970-416989 Msa0747630:intron 30.0%
! TATCATTGCTTCTAAGAAGT+TGG - chr5_2:416994-417013 Msa0747620:intron 30.0%
!!! TGACACTGAATTTTTTGACA+GGG - chr5_2:417026-417045 Msa0747620:intron 30.0%
TAAACAAGATAGAAGTTGCA+TGG + chr5_2:417059-417078 Msa0747630:intron 30.0%
AATATTTCTTGCAATGAGCT+AGG - chr5_2:417154-417173 Msa0747620:intron 30.0%
AATACTTCAGTATGTGCTAA+AGG + chr5_2:417220-417239 Msa0747630:intron 30.0%
!! TTATAGTGCCACTAAGTTTT+GGG - chr5_2:417273-417292 Msa0747620:intron 30.0%
!! TTGACTGATTTGAACATATC+AGG - chr5_2:417325-417344 Msa0747620:intron 30.0%
TATTGATACTATGATTGCTC+TGG - chr5_2:417558-417577 Msa0747620:intron 30.0%
CTTCATTGCAAATTTGGTAA+AGG + chr5_2:417657-417676 Msa0747630:intron 30.0%
CTTTACCAAATTTGCAATGA+AGG - chr5_2:417655-417674 Msa0747620:intron 30.0%
! TTAAAGATCGCATTTTCTCA+AGG + chr5_2:417696-417715 Msa0747630:intron 30.0%
TATTGAGGAAGAATGTATGT+TGG + chr5_2:418015-418034 Msa0747630:intron 30.0%
CAGCAATGTAACAAAAGATA+CGG + chr5_2:418054-418073 Msa0747630:intron 30.0%
AAGTTAGTATCAGAGACAAT+CGG - chr5_2:418092-418111 Msa0747620:intron 30.0%
AACTATTGACCAACAATTCA+TGG + chr5_2:418210-418229 Msa0747630:three_prime_UTR 30.0%
AATGCTTAAACTGTTTAGGT+AGG - chr5_2:418463-418482 Msa0747620:three_prime_UTR 30.0%
ATGCTTAAACTGTTTAGGTA+GGG - chr5_2:418464-418483 Msa0747620:three_prime_UTR 30.0%
AAGAGGCTAAAAGTAGAAAT+TGG + chr5_2:418712-418731 None:intergenic 30.0%
!! CTTCACTTGTTTTCTCTTTT+GGG + chr5_2:418768-418787 None:intergenic 30.0%
TCATGAAATTGCAAGTGAAA+GGG - chr5_2:418879-418898 Msa0747620:CDS 30.0%
AAGAGATACACCTTGAAATT+TGG - chr5_2:418943-418962 Msa0747620:CDS 30.0%
! AATTGGCCATTGATAATAGA+AGG - chr5_2:418984-419003 Msa0747620:CDS 30.0%
AATATTGACATCCAAGTTAC+TGG - chr5_2:419193-419212 Msa0747620:intron 30.0%
AGGACTACGAATTATTCAAA+AGG + chr5_2:419334-419353 None:intergenic 30.0%
AAAAGCGATTAAAGCAAACA+TGG - chr5_2:419643-419662 Msa0747620:CDS 30.0%
TTGAACGTAATCACATGTAT+CGG + chr5_2:419712-419731 None:intergenic 30.0%
! AGTTAAGTTGTGTTAAAAGG+AGG + chr5_2:419826-419845 None:intergenic 30.0%
TATCATGAAGAGCAAAGTTT+CGG + chr5_2:420003-420022 None:intergenic 30.0%
TAGGCGTTAATAAATGATTC+TGG + chr5_2:420059-420078 None:intergenic 30.0%
TTATAAGGAAGCTCATGAAT+TGG + chr5_2:420229-420248 None:intergenic 30.0%
AAATTCAACTTGACCTTAGA+CGG - chr5_2:420954-420973 Msa0747620:CDS 30.0%
AACGGTGATCTCTATAGAAT+AGG + chr5_2:415206-415225 None:intergenic 35.0%
TATTCTATAGAGATCACCGT+TGG - chr5_2:415205-415224 Msa0747620:three_prime_UTR 35.0%
TGTTGGAATATGGTGATTAG+TGG + chr5_2:415416-415435 Msa0747630:CDS 35.0%
GTAAAGCTTGAGAACTTCTT+CGG + chr5_2:415708-415727 Msa0747630:CDS 35.0%
!!! CATTTTTTCAAGCACAGAGT+TGG + chr5_2:415948-415967 Msa0747630:CDS 35.0%
CTGATAATTTACTCCTTCTG+TGG - chr5_2:416259-416278 Msa0747620:intron 35.0%
TCAATCTGAGAATTCAAGCT+CGG + chr5_2:416340-416359 Msa0747630:intron 35.0%
ATCTATCATTGTCACGAATG+GGG - chr5_2:416625-416644 Msa0747620:intron 35.0%
!! GGTCTTTTGAGAATTTACTG+TGG - chr5_2:416646-416665 Msa0747620:intron 35.0%
CAATTGATCGAAGTTCATTG+TGG + chr5_2:416692-416711 Msa0747630:intron 35.0%
!! TCCACTTTTCCTATCACTTT+TGG - chr5_2:416958-416977 Msa0747620:intron 35.0%
!!! CTGACACTGAATTTTTTGAC+AGG - chr5_2:417025-417044 Msa0747620:intron 35.0%
!!! ACTGAATTTTTTGACAGGGT+TGG - chr5_2:417030-417049 Msa0747620:intron 35.0%
!! ACTTGGTAGTTTTACTGCTT+TGG - chr5_2:417096-417115 Msa0747620:intron 35.0%
!! CTTGGTAGTTTTACTGCTTT+GGG - chr5_2:417097-417116 Msa0747620:intron 35.0%
!! TTGGTAGTTTTACTGCTTTG+GGG - chr5_2:417098-417117 Msa0747620:intron 35.0%
! ACATACTGAAGTATTTGCCT+GGG - chr5_2:417225-417244 Msa0747620:intron 35.0%
TGCCACAAAGGATTTCAAAA+CGG + chr5_2:417252-417271 Msa0747630:intron 35.0%
!! GTTATAGTGCCACTAAGTTT+TGG - chr5_2:417272-417291 Msa0747620:intron 35.0%
TCATTTAAGCACTTCAGAGT+AGG + chr5_2:417400-417419 Msa0747630:intron 35.0%
ATGAAGAGTTATAGTGACCT+TGG - chr5_2:417419-417438 Msa0747620:intron 35.0%
!! TAGTGACCTTGGTTTGTTTA+TGG - chr5_2:417430-417449 Msa0747620:intron 35.0%
AGGAGTGAGATTTGAACAAA+GGG + chr5_2:417637-417656 Msa0747630:intron 35.0%
AAGGAGTGAGATTTGAACAA+AGG + chr5_2:417638-417657 Msa0747630:intron 35.0%
TTGCACCTTCATTGCAAATT+TGG + chr5_2:417663-417682 Msa0747630:intron 35.0%
AAATTTGTGTACCCTAGTGT+TGG + chr5_2:417849-417868 Msa0747630:intron 35.0%
!! GAAAGGTGTTTCATTAGCTA+TGG + chr5_2:417993-418012 Msa0747630:intron 35.0%
AGGAAGAATGTATGTTGGAA+AGG + chr5_2:418010-418029 Msa0747630:intron 35.0%
TATACAAGCGAAAAGACATG+AGG - chr5_2:418266-418285 Msa0747620:three_prime_UTR 35.0%
AAAAACAAGTCTTCACTCGT+GGG + chr5_2:418341-418360 Msa0747630:three_prime_UTR 35.0%
TAAAAACAAGTCTTCACTCG+TGG + chr5_2:418342-418361 Msa0747630:three_prime_UTR 35.0%
GAGAAATGTTAACCAATGTC+CGG - chr5_2:418587-418606 Msa0747620:three_prime_UTR 35.0%
AGAAATGTTAACCAATGTCC+GGG - chr5_2:418588-418607 Msa0747620:three_prime_UTR 35.0%
!! CCTTCACTTGTTTTCTCTTT+TGG + chr5_2:418769-418788 None:intergenic 35.0%
CCAAAAGAGAAAACAAGTGA+AGG - chr5_2:418766-418785 Msa0747620:exon 35.0%
CAAGTGAAGGAACAAAGTAA+AGG - chr5_2:418779-418798 Msa0747620:CDS 35.0%
GTCATGAAATTGCAAGTGAA+AGG - chr5_2:418878-418897 Msa0747620:CDS 35.0%
GCTTCTCCTTCTATTATCAA+TGG + chr5_2:418993-419012 None:intergenic 35.0%
AAATGTTGGAACCAGTAACT+TGG + chr5_2:419207-419226 None:intergenic 35.0%
CAAAACCAAAACCAGATTGT+GGG - chr5_2:419284-419303 Msa0747620:intron 35.0%
AAAACCAAAACCAGATTGTG+GGG - chr5_2:419285-419304 Msa0747620:intron 35.0%
ATTCAAAAGGTGAGTTAGTG+TGG + chr5_2:419321-419340 None:intergenic 35.0%
TGTGGCATGGAAAATTGAAA+AGG - chr5_2:419363-419382 Msa0747620:intron 35.0%
! TTGGCATATTTTATCGTGAG+AGG - chr5_2:419438-419457 Msa0747620:intron 35.0%
! ATATTTTATCGTGAGAGGAG+AGG - chr5_2:419443-419462 Msa0747620:intron 35.0%
!! GTTTGAAGTGATTTTGAGAG+TGG + chr5_2:419477-419496 None:intergenic 35.0%
AATAAAACGAGAGGAACATC+AGG + chr5_2:419856-419875 None:intergenic 35.0%
CCAACTGAAAATAAAACGAG+AGG + chr5_2:419865-419884 None:intergenic 35.0%
!!! CCTCTCGTTTTATTTTCAGT+TGG - chr5_2:419862-419881 Msa0747620:intron 35.0%
!!! GTTGGTTTTGAAACAACGAA+CGG - chr5_2:419880-419899 Msa0747620:intron 35.0%
CGTTTCTTTCTTAATCCAGA+AGG - chr5_2:419943-419962 Msa0747620:intron 35.0%
GGAAGCAAAGAAAGCTTATA+AGG + chr5_2:420244-420263 None:intergenic 35.0%
GTGTTATGAAGGGAAGAAAA+TGG + chr5_2:420271-420290 None:intergenic 35.0%
!! GCTTTGCTTTGATTGCTTTT+CGG - chr5_2:420685-420704 Msa0747620:intron 35.0%
!! CTTTGATTGCTTTTCGGTTT+TGG - chr5_2:420691-420710 Msa0747620:intron 35.0%
!!! TTGCTTTTCGGTTTTGGAAT+CGG - chr5_2:420697-420716 Msa0747620:intron 35.0%
! AGTTTAGCGAGGAATTTTTG+TGG - chr5_2:420720-420739 Msa0747620:CDS 35.0%
!!! TGTGTGTGTGTTTTGAGAAT+CGG - chr5_2:420902-420921 Msa0747620:intron 35.0%
AAACAAAATGATAAGCGTGG+CGG + chr5_2:420983-421002 None:intergenic 35.0%
AATACCCGTAGAATGTCCAA+CGG + chr5_2:415224-415243 None:intergenic 40.0%
! AACGTGGAAAGTTGACTTCA+TGG - chr5_2:415335-415354 Msa0747620:three_prime_UTR 40.0%
! TGGAAAGTTGACTTCATGGA+AGG - chr5_2:415339-415358 Msa0747620:three_prime_UTR 40.0%
! ATGGTGATTAGTGGATACAG+CGG + chr5_2:415407-415426 Msa0747630:CDS 40.0%
ATGCACCAATTGGAAGTTGT+TGG + chr5_2:415433-415452 Msa0747630:CDS 40.0%
AACAACTTCCAATTGGTGCA+TGG - chr5_2:415432-415451 Msa0747620:three_prime_UTR 40.0%
TGGGAAAAGAACTTACTAGG+TGG + chr5_2:415550-415569 Msa0747630:CDS 40.0%
AGCACAGTCTGGTATTACTT+CGG - chr5_2:415777-415796 Msa0747620:three_prime_UTR 40.0%
CAATTCTACAATTGTGCGCA+GGG + chr5_2:416192-416211 Msa0747630:intron 40.0%
TTGGCTGTCTGAATTTCTGA+TGG - chr5_2:416209-416228 Msa0747620:intron 40.0%
TGGCTGTCTGAATTTCTGAT+GGG - chr5_2:416210-416229 Msa0747620:intron 40.0%
AACCAGAAGAAAACCACAGA+AGG + chr5_2:416275-416294 Msa0747630:intron 40.0%
CTGATGCGTCTTTATAGTAG+TGG + chr5_2:416569-416588 Msa0747630:intron 40.0%
ATCGAAGTTCATTGTGGCTA+AGG + chr5_2:416686-416705 Msa0747630:intron 40.0%
TATAGTGGTGTTTGAGTGGA+GGG + chr5_2:416761-416780 Msa0747630:intron 40.0%
TTATAGTGGTGTTTGAGTGG+AGG + chr5_2:416762-416781 Msa0747630:intron 40.0%
AGCGTTATTATTACTGGGTG+TGG - chr5_2:416785-416804 Msa0747620:intron 40.0%
!! AAGCTTGGGTTAGCAAAAAG+TGG + chr5_2:416868-416887 Msa0747630:intron 40.0%
GCCAAAAGTGATAGGAAAAG+TGG + chr5_2:416962-416981 Msa0747630:intron 40.0%
! TGCTTCTAAGAAGTTGGAAG+AGG - chr5_2:417000-417019 Msa0747620:intron 40.0%
! GCTTCTAAGAAGTTGGAAGA+GGG - chr5_2:417001-417020 Msa0747620:intron 40.0%
!!! GAATTTTTTGACAGGGTTGG+AGG - chr5_2:417033-417052 Msa0747620:intron 40.0%
! CACATACTGAAGTATTTGCC+TGG - chr5_2:417224-417243 Msa0747620:intron 40.0%
!!! GACCGTTTTGAAATCCTTTG+TGG - chr5_2:417247-417266 Msa0747620:intron 40.0%
GAAAGCTTCCCAAAACTTAG+TGG + chr5_2:417284-417303 Msa0747630:intron 40.0%
ACCAAGTAGAAACCAACACT+AGG - chr5_2:417834-417853 Msa0747620:intron 40.0%
CCAAGTAGAAACCAACACTA+GGG - chr5_2:417835-417854 Msa0747620:intron 40.0%
GATGTAAGAAGCAAATGTGG+CGG + chr5_2:417935-417954 Msa0747630:intron 40.0%
CAGGATGTAAGAAGCAAATG+TGG + chr5_2:417938-417957 Msa0747630:intron 40.0%
!! ATTTCGGTGTTTCTTGGCTT+TGG + chr5_2:417961-417980 Msa0747630:intron 40.0%
!! CATGTCATTTCGGTGTTTCT+TGG + chr5_2:417967-417986 Msa0747630:intron 40.0%
CAAGAAACACCGAAATGACA+TGG - chr5_2:417965-417984 Msa0747620:intron 40.0%
GCAGTCTTGAACTTCTATTG+AGG + chr5_2:418030-418049 Msa0747630:intron 40.0%
TTAGTATCAGAGACAATCGG+TGG - chr5_2:418095-418114 Msa0747620:intron 40.0%
ACCAACAATTCATGGCATCA+CGG + chr5_2:418202-418221 Msa0747630:three_prime_UTR 40.0%
ACTCGTGGGTTTGTATTAGT+GGG + chr5_2:418327-418346 Msa0747630:three_prime_UTR 40.0%
GAAATGTTAACCAATGTCCG+GGG - chr5_2:418589-418608 Msa0747620:three_prime_UTR 40.0%
AGCCTCTTTAAACAATGTCC+CGG - chr5_2:418724-418743 Msa0747620:three_prime_UTR 40.0%
!! CTCTTTTGGGTCATGTTAAC+CGG + chr5_2:418755-418774 None:intergenic 40.0%
GTTGTGAATTCATGGAAGCA+TGG + chr5_2:418855-418874 None:intergenic 40.0%
ATGACGTGGTTGTGAATTCA+TGG + chr5_2:418863-418882 None:intergenic 40.0%
TCACTTGCAATTTCATGACG+TGG + chr5_2:418877-418896 None:intergenic 40.0%
TCAAGACAGCAAAAGTTGCA+CGG - chr5_2:418920-418939 Msa0747620:CDS 40.0%
AAAAACACGAGAAGCCACAT+GGG + chr5_2:419021-419040 None:intergenic 40.0%
GTGAAAATCTAGGCATGTAG+TGG - chr5_2:419123-419142 Msa0747620:CDS 40.0%
!!! CCACAATCTGGTTTTGGTTT+TGG + chr5_2:419286-419305 None:intergenic 40.0%
CCAAAACCAAAACCAGATTG+TGG - chr5_2:419283-419302 Msa0747620:intron 40.0%
CGTAGTCCTAATTACGATTG+TGG - chr5_2:419345-419364 Msa0747620:intron 40.0%
TCCTAATTACGATTGTGGCA+TGG - chr5_2:419350-419369 Msa0747620:intron 40.0%
TCCATGCCACAATCGTAATT+AGG + chr5_2:419354-419373 None:intergenic 40.0%
! TAATCACATGTATCGGTGTC+AGG + chr5_2:419705-419724 None:intergenic 40.0%
AAGACTTATGGGTCAAGAGT+AGG + chr5_2:420078-420097 None:intergenic 40.0%
!! GTAGAAGCACTTAACAGGTT+GGG + chr5_2:420186-420205 None:intergenic 40.0%
!! TGTAGAAGCACTTAACAGGT+TGG + chr5_2:420187-420206 None:intergenic 40.0%
AACCTGTTAAGTGCTTCTAC+AGG - chr5_2:420186-420205 Msa0747620:intron 40.0%
TGAAGGGAAGAAAATGGATG+AGG + chr5_2:420265-420284 None:intergenic 40.0%
GCTATGATTCTCGATCTTCA+AGG + chr5_2:420510-420529 None:intergenic 40.0%
!! AGCTTTGAGAAGATACGAAG+CGG - chr5_2:420527-420546 Msa0747620:CDS 40.0%
!!! ATCGAGTTCGATCGCTTTTT+CGG - chr5_2:420560-420579 Msa0747620:intron 40.0%
TTAATCTTCCTCAGCATGCA+CGG + chr5_2:420750-420769 None:intergenic 40.0%
TTCCGATGAGAAATTTCCTC+CGG - chr5_2:420845-420864 Msa0747620:CDS 40.0%
GATCACCGTTGGACATTCTA+CGG - chr5_2:415216-415235 Msa0747620:three_prime_UTR 45.0%
ATCACCGTTGGACATTCTAC+GGG - chr5_2:415217-415236 Msa0747620:three_prime_UTR 45.0%
GCTCATACAGAACCTGTTGA+CGG - chr5_2:415310-415329 Msa0747620:three_prime_UTR 45.0%
CTCATACAGAACCTGTTGAC+GGG - chr5_2:415311-415330 Msa0747620:three_prime_UTR 45.0%
AACTTCCAATTGGTGCATGG+AGG - chr5_2:415435-415454 Msa0747620:three_prime_UTR 45.0%
AATTGCCTCCATGCACCAAT+TGG + chr5_2:415443-415462 Msa0747630:CDS 45.0%
TTCAAGATTCGCTGTCAGAC+TGG - chr5_2:415482-415501 Msa0747620:three_prime_UTR 45.0%
TTACACCGAGCTGATGAAGT+TGG - chr5_2:415724-415743 Msa0747620:three_prime_UTR 45.0%
TGGATCCAACTTCATCAGCT+CGG + chr5_2:415732-415751 Msa0747630:intron 45.0%
!! TTGAGTTAATGGGCTGTGAC+AGG - chr5_2:416152-416171 Msa0747620:intron 45.0%
!! TGAGTTAATGGGCTGTGACA+GGG - chr5_2:416153-416172 Msa0747620:intron 45.0%
GTGCGCAGGGCATAAATTAT+AGG + chr5_2:416179-416198 Msa0747630:intron 45.0%
CCAATTCTACAATTGTGCGC+AGG + chr5_2:416193-416212 Msa0747630:intron 45.0%
CCTGCGCACAATTGTAGAAT+TGG - chr5_2:416190-416209 Msa0747620:intron 45.0%
TTATCAGTCGTGCATGTACG+AGG + chr5_2:416246-416265 Msa0747630:intron 45.0%
! CTCCTTCTGTGGTTTTCTTC+TGG - chr5_2:416270-416289 Msa0747620:intron 45.0%
AAGGATTTCAAAACGGTCCC+AGG + chr5_2:417245-417264 Msa0747630:intron 45.0%
TGGCACTATAACTGCCACAA+AGG + chr5_2:417264-417283 Msa0747630:intron 45.0%
TTGGTCGTTGTTGACATCAC+AGG - chr5_2:417529-417548 Msa0747620:intron 45.0%
!! CCCTAGTGTTGGTTTCTACT+TGG + chr5_2:417838-417857 Msa0747630:intron 45.0%
! GCTATGGCACCATGTCATTT+CGG + chr5_2:417977-417996 Msa0747630:intron 45.0%
CAATTCATGGCATCACGGTA+TGG + chr5_2:418197-418216 Msa0747630:three_prime_UTR 45.0%
ACCGTGATGCCATGAATTGT+TGG - chr5_2:418198-418217 Msa0747620:three_prime_UTR 45.0%
AGCGAAAAGACATGAGGTTG+AGG - chr5_2:418272-418291 Msa0747620:three_prime_UTR 45.0%
CACTCGTGGGTTTGTATTAG+TGG + chr5_2:418328-418347 Msa0747630:three_prime_UTR 45.0%
CTCCGGGACATTGTTTAAAG+AGG + chr5_2:418729-418748 None:intergenic 45.0%
CTCTTTAAACAATGTCCCGG+AGG - chr5_2:418727-418746 Msa0747620:three_prime_UTR 45.0%
CAAAAACACGAGAAGCCACA+TGG + chr5_2:419022-419041 None:intergenic 45.0%
ACTGGTAAGTAGCAACGACT+CGG - chr5_2:419054-419073 Msa0747620:CDS 45.0%
GGTGCTAAATTAGACAGACG+TGG - chr5_2:419075-419094 Msa0747620:CDS 45.0%
!! TGAACCCCACAATCTGGTTT+TGG + chr5_2:419292-419311 None:intergenic 45.0%
!! TGCCTGTAGAAGCACTTAAC+AGG + chr5_2:420191-420210 None:intergenic 45.0%
TCTACAGGCACAGAATACTG+TGG - chr5_2:420201-420220 Msa0747620:intron 45.0%
!! CGTTGGGAGAGTGTTATGAA+GGG + chr5_2:420281-420300 None:intergenic 45.0%
!! GTTAGCGGATTTGACTGAGT+CGG + chr5_2:420340-420359 None:intergenic 45.0%
TTCGTTTGCGAGGTTGTTGA+TGG - chr5_2:420596-420615 Msa0747620:intron 45.0%
!! GGCGGATCTGGATTTGTTTT+TGG - chr5_2:420617-420636 Msa0747620:intron 45.0%
! TTTGGAATCGGAGTTTAGCG+AGG - chr5_2:420709-420728 Msa0747620:CDS 45.0%
GGAAGATTAAAGCCATTGCG+AGG - chr5_2:420760-420779 Msa0747620:CDS 45.0%
AGTCATCATGATCCTCGCAA+TGG + chr5_2:420775-420794 None:intergenic 45.0%
! TGACTTGTAAACCGATGTCG+CGG - chr5_2:420790-420809 Msa0747620:CDS 45.0%
CACCGGAGGAAATTTCTCAT+CGG + chr5_2:420850-420869 None:intergenic 45.0%
GATGAGAAATTTCCTCCGGT+GGG - chr5_2:420849-420868 Msa0747620:CDS 45.0%
ATTCTTCTTCTCACACCCAC+CGG + chr5_2:420867-420886 None:intergenic 45.0%
!! AAATTATAAAATACAAAAAT+TGG - chr5_2:418967-418986 Msa0747620:CDS 5.0%
GATTCGCTGTCAGACTGGTA+TGG - chr5_2:415487-415506 Msa0747620:three_prime_UTR 50.0%
CTACAAGGATGAGCACAGTC+TGG - chr5_2:415766-415785 Msa0747620:three_prime_UTR 50.0%
CAGTCTGGTATTACTTCGGC+AGG - chr5_2:415781-415800 Msa0747620:three_prime_UTR 50.0%
GGTGTTTGAGTGGAGGGAAA+AGG + chr5_2:416755-416774 Msa0747630:intron 50.0%
GACAGCAGGATCAAGCACAA+TGG + chr5_2:416834-416853 Msa0747630:intron 50.0%
TGGATAACTTGAGCGACAGC+AGG + chr5_2:416848-416867 Msa0747630:intron 50.0%
! GTGCTAAAGGCGAAGAGCAT+AGG + chr5_2:417207-417226 Msa0747630:intron 50.0%
CGTTGTTGACATCACAGGTG+TGG - chr5_2:417534-417553 Msa0747620:intron 50.0%
! AATGTGGCGGCGCTTTGTTA+AGG + chr5_2:417922-417941 Msa0747630:intron 50.0%
TGTTTCCTTAACCAGTGCCC+CGG + chr5_2:418609-418628 None:intergenic 50.0%
AGGAGAAGCAACATCCCATG+TGG - chr5_2:419004-419023 Msa0747620:CDS 50.0%
ACTACGTGAACCCCACAATC+TGG + chr5_2:419298-419317 None:intergenic 50.0%
AGGTCACTGCTGTTAGACAG+CGG + chr5_2:419685-419704 None:intergenic 50.0%
!! GCGTTGGGAGAGTGTTATGA+AGG + chr5_2:420282-420301 None:intergenic 50.0%
CACCAAGCTTTCGCGTTCTT+CGG - chr5_2:420303-420322 Msa0747620:intron 50.0%
AAACTCGCAACGAGTGAACG+CGG + chr5_2:420378-420397 None:intergenic 50.0%
TTCACCTTGCTCAAGCGAAC+CGG - chr5_2:420431-420450 Msa0747620:CDS 50.0%
! AGATACGAAGCGGCGTCTTT+TGG - chr5_2:420537-420556 Msa0747620:CDS 50.0%
AACCTCGCAAACGAAGCCTT+AGG + chr5_2:420591-420610 None:intergenic 50.0%
! GTTTGCGAGGTTGTTGATGG+CGG - chr5_2:420599-420618 Msa0747620:intron 50.0%
CGATGAGAAATTTCCTCCGG+TGG - chr5_2:420848-420867 Msa0747620:CDS 50.0%
TTTCCACGTTGCCCGTCAAC+AGG + chr5_2:415325-415344 None:intergenic 55.0%
TCGCTGTCAGACTGGTATGG+TGG - chr5_2:415490-415509 Msa0747620:three_prime_UTR 55.0%
AGCGACTCTAGCGATCTGAG+AGG + chr5_2:417124-417143 Msa0747630:intron 55.0%
!! CGGTGTTTCTTGGCTTTGGC+AGG + chr5_2:417957-417976 Msa0747630:intron 55.0%
TTAACCAATGTCCGGGGCAC+TGG - chr5_2:418595-418614 Msa0747620:three_prime_UTR 55.0%
TTAACCAGTGCCCCGGACAT+TGG + chr5_2:418602-418621 None:intergenic 55.0%
!! AATGTCCGGGGCACTGGTTA+AGG - chr5_2:418601-418620 Msa0747620:three_prime_UTR 55.0%
! AAACAATGTCCCGGAGGCAC+CGG - chr5_2:418733-418752 Msa0747620:three_prime_UTR 55.0%
TCATGTTAACCGGTGCCTCC+GGG + chr5_2:418745-418764 None:intergenic 55.0%
GTCATGTTAACCGGTGCCTC+CGG + chr5_2:418746-418765 None:intergenic 55.0%
!! GCGAAAGCTTGGTGTGCGTT+GGG + chr5_2:420297-420316 None:intergenic 55.0%
GTCCGAAGAACGCGAAAGCT+TGG + chr5_2:420308-420327 None:intergenic 55.0%
!! ACGAGTTGACTCGGCGTTAG+CGG + chr5_2:420355-420374 None:intergenic 55.0%
! TGAACGCGGACGAGTTGACT+CGG + chr5_2:420364-420383 None:intergenic 55.0%
TCGCTTGAGCAAGGTGAACG+TGG + chr5_2:420429-420448 None:intergenic 55.0%
! GGCGTCGAGTGATTCAAGAG+CGG - chr5_2:420473-420492 Msa0747620:CDS 55.0%
!!! CGCTTTTTCGGCTTCGCCTA+AGG - chr5_2:420572-420591 Msa0747620:intron 55.0%
!! GAGGTTGTTGATGGCGGATC+TGG - chr5_2:420605-420624 Msa0747620:intron 55.0%
! GCAAAGCGTCACTTCGTACG+TGG + chr5_2:420672-420691 None:intergenic 55.0%
GTGGAATTCCGTGCATGCTG+AGG - chr5_2:420739-420758 Msa0747620:CDS 55.0%
CAAGCGATGTACCGCGACAT+CGG + chr5_2:420804-420823 None:intergenic 55.0%
! GAACCTGTTGACGGGCAACG+TGG - chr5_2:415319-415338 Msa0747620:three_prime_UTR 60.0%
!! CGCGAAAGCTTGGTGTGCGT+TGG + chr5_2:420298-420317 None:intergenic 60.0%
ACCTTGCTCAAGCGAACCGG+CGG - chr5_2:420434-420453 Msa0747620:CDS 60.0%
CGCCTAAGGCTTCGTTTGCG+AGG - chr5_2:420586-420605 Msa0747620:intron 60.0%
CTTCTTCTCACACCCACCGG+AGG + chr5_2:420864-420883 None:intergenic 60.0%
!! GCCGCCGGTTCGCTTGAGCA+AGG + chr5_2:420438-420457 None:intergenic 70.0%
TCAAGCGAACCGGCGGCGAG+AGG - chr5_2:420441-420460 Msa0747620:CDS 70.0%
GCGTTGTCTCCTCTCGCCGC+CGG + chr5_2:420453-420472 None:intergenic 70.0%
GGCGGCGAGAGGAGACAACG+CGG - chr5_2:420452-420471 Msa0747620:CDS 70.0%
AGCGTGGCGGCTGCCGTCTA+AGG + chr5_2:420970-420989 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 415181 421019 415181 ID=Msa0747620;Name=Msa0747620
chr5_2 mRNA 415181 421019 415181 ID=Msa0747620-mRNA-1;Parent=Msa0747620;Name=Msa0747620-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.6|0.66|1|0.2|0.33|6|1469|350
chr5_2 exon 415181 416011 415181 ID=Msa0747620-mRNA-1:exon:95;Parent=Msa0747620-mRNA-1
chr5_2 exon 418130 419153 418130 ID=Msa0747620-mRNA-1:exon:94;Parent=Msa0747620-mRNA-1
chr5_2 exon 419486 419669 419486 ID=Msa0747620-mRNA-1:exon:93;Parent=Msa0747620-mRNA-1
chr5_2 exon 420398 420578 420398 ID=Msa0747620-mRNA-1:exon:92;Parent=Msa0747620-mRNA-1
chr5_2 exon 420706 420893 420706 ID=Msa0747620-mRNA-1:exon:91;Parent=Msa0747620-mRNA-1
chr5_2 exon 420906 421019 420906 ID=Msa0747620-mRNA-1:exon:90;Parent=Msa0747620-mRNA-1
chr5_2 CDS 420906 421019 420906 ID=Msa0747620-mRNA-1:cds;Parent=Msa0747620-mRNA-1
chr5_2 CDS 420706 420893 420706 ID=Msa0747620-mRNA-1:cds;Parent=Msa0747620-mRNA-1
chr5_2 CDS 420398 420578 420398 ID=Msa0747620-mRNA-1:cds;Parent=Msa0747620-mRNA-1
chr5_2 CDS 419486 419669 419486 ID=Msa0747620-mRNA-1:cds;Parent=Msa0747620-mRNA-1
chr5_2 CDS 418768 419153 418768 ID=Msa0747620-mRNA-1:cds;Parent=Msa0747620-mRNA-1
chr5_2 three_prime_UTR 418130 418767 418130 ID=Msa0747620-mRNA-1:three_prime_utr;Parent=Msa0747620-mRNA-1
chr5_2 three_prime_UTR 415181 416011 415181 ID=Msa0747620-mRNA-1:three_prime_utr;Parent=Msa0747620-mRNA-1
Gene Sequence

>Msa0747620

ATGGAGCTCAAACTATCGAAAACCTATTCTATAGAGATCACCGTTGGACATTCTACGGGTATTTTATCTTCAAATGGATATCATTATGGGGATCCTTCCCAAATTACTTTTGAAACTGCTCATACAGAACCTGTTGACGGGCAACGTGGAAAGTTGACTTCATGGAAGGACAATGATTTCCGAAAAATTGATCATTTTGAAGAATCAAATTCCGCTGTATCCACTAATCACCATATTCCAACAACTTCCAATTGGTGCATGGAGGCAATTGATCAAGAAATAACTAATTTTCAAGATTCGCTTAAAATTAGAAAGCTTACACTTGCAAGACTTTTCACTGCTCTTGATTTGTTATCACCCCAACATGATAAAAGAAAAAATCATACCGAAGAAGTTCTCAAGCTTTACACCGAGCTGATGAAGTTGGATCCAACACATTCTCTATACTACAAGGATGAGCACAGTCTGGTATTACTTCGGCAGATAACTTCATCTAGAGAGTCTTTACTACCATATTGCCACTACTATAAAGACGCATCAGAAACAAATACTAGTTATGTGTGTCTACGGTTACAAAATCTATCATTGTCACGAATGGGGTCTTTTGAGAATTTACTGTGGGTGCAAATGCTCGACCTTAGCCACAATGAACTTCGATCAATTGAAGGGTTGGAGGCCATGCAACTTCTATCTTGTTTAAATCTGAGTCATAATAAACTTGGTAGTTTTACTGCTTTGGGGCCTCTCAGATCGCTAGAGTCGCTTAAAGTGTTGAATATTTCTTGCAATGAGCTAGGCTCTCACTCAATTGACACGAGACGATACCTATGCTCTTCGCCTTTAGCACATACTGAAGTATTTGCCTGGGACCGTTTTGAAATCCTTTGTGGCAGTTATAGTGCCACTAAGTTTTGGGAAGCTTTCTTGATATTTGAAAGCTTGAACTTGACTGATTTGAACATATCAGGAAATGCAGTCGCTGATGAGAACTTCACGTCATTTATTGTCAAAGTTTTGCCTACTCTGAAGTGCTTAAATGATGAAGAGTTATAG
Protein sequence

>Msa0747620

MELKLSKTYSIEITVGHSTGILSSNGYHYGDPSQITFETAHTEPVDGQRGKLTSWKDNDFRKIDHFEESNSAVSTNHHIPTTSNWCMEAIDQEITNFQDSLKIRKLTLARLFTALDLLSPQHDKRKNHTEEVLKLYTELMKLDPTHSLYYKDEHSLVLLRQITSSRESLLPYCHYYKDASETNTSYVCLRLQNLSLSRMGSFENLLWVQMLDLSHNELRSIEGLEAMQLLSCLNLSHNKLGSFTALGPLRSLESLKVLNISCNELGSHSIDTRRYLCSSPLAHTEVFAWDRFEILCGSYSATKFWEAFLIFESLNLTDLNISGNAVADENFTSFIVKVLPTLKCLNDEEL*