AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0380910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380910 MtrunA17_Chr3g0134611 98.160 326 6 0 1 326 1 326 0.0 664
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0380910 AT5G65860.2 75.155 322 78 1 4 323 5 326 0.0 527
Msa0380910 AT5G65860.1 75.155 322 78 1 4 323 25 346 0.0 527
Msa0380910 AT5G65860.3 75.155 322 78 1 4 323 5 326 0.0 527

Find 106 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTCTTGAGCTTGAGAATT+TGG 0.148087 3_1:+82859929 Msa0380910:CDS
TGATTCCGGTTATGATTATT+TGG 0.213704 3_1:+82858576 Msa0380910:CDS
CATGTACTCAATATTGGATT+TGG 0.261666 3_1:+82858718 Msa0380910:CDS
TCTCTTGAGCTTGAGAATTT+GGG 0.285212 3_1:+82859930 Msa0380910:CDS
ATTGCCTGTTAAGGATTGTT+TGG 0.285893 3_1:+82859974 Msa0380910:CDS
TTGCCTGTTAAGGATTGTTT+GGG 0.287460 3_1:+82859975 Msa0380910:CDS
CTATGCGAGGCGGCGATTAA+AGG 0.287831 3_1:+82858016 Msa0380910:CDS
GAAGAAGCTCATAAGCTTCT+TGG 0.296988 3_1:-82858240 None:intergenic
GTTATGATTATTTGGAAGAT+AGG 0.317017 3_1:+82858584 Msa0380910:CDS
TTCTCTCCGCCGGTGCTCCT+TGG 0.327627 3_1:+82858161 Msa0380910:CDS
ACGTATGCTTCGCACGGGTT+GGG 0.340731 3_1:+82858822 Msa0380910:CDS
TCTTTCTTCAATGGCCTTTG+TGG 0.351869 3_1:+82859867 Msa0380910:CDS
ATTAATTCCATTGCCTGTTA+AGG 0.360892 3_1:+82859965 Msa0380910:CDS
CATGCTAAAGCTGTTTGTTC+AGG 0.364371 3_1:+82858688 Msa0380910:CDS
GGTGGTCATGTACTCAATAT+TGG 0.375114 3_1:+82858712 Msa0380910:CDS
CTCAATATTGGATTTGGAAT+GGG 0.395612 3_1:+82858724 Msa0380910:CDS
GGAATATACTCTTTCTTCAA+TGG 0.395895 3_1:+82859858 Msa0380910:CDS
TCATCTGCAGACTGACAAAC+AGG 0.396199 3_1:-82860056 None:intergenic
AACGTATGCTTCGCACGGGT+TGG 0.424986 3_1:+82858821 Msa0380910:CDS
TGCTTTGCGGCGAGCATAAG+AGG 0.429396 3_1:-82858112 None:intergenic
ATCTTCCAAATAATCATAAC+CGG 0.430063 3_1:-82858581 None:intergenic
GAAAAGAAAAGCACTGATTC+CGG 0.430789 3_1:+82858562 Msa0380910:CDS
ATTGTTGCTTGTGTAACTTA+TGG 0.433260 3_1:+82860153 Msa0380910:three_prime_UTR
CCATGTTGTTTACTGCCACT+TGG 0.440964 3_1:+82859905 Msa0380910:CDS
TATGGTATTTGTAAGAGAAC+AGG 0.442003 3_1:+82860171 Msa0380910:three_prime_UTR
CGTATGCTTCGCACGGGTTG+GGG 0.445579 3_1:+82858823 Msa0380910:CDS
GGGATATTCTTTGACACCTA+CGG 0.456919 3_1:+82859774 Msa0380910:intron
AATTATGAGCTTAGTGTACA+TGG 0.459923 3_1:+82860290 Msa0380910:three_prime_UTR
TTAGCATGAGCCTCCATCAA+TGG 0.470308 3_1:-82858673 None:intergenic
GGGTGCATGGCCGTGCTTTG+CGG 0.480399 3_1:-82858125 None:intergenic
ATTCGATCTGAATTAGTGTT+GGG 0.480443 3_1:+82858523 Msa0380910:CDS
CCACCCGGCTTCAACAATAC+AGG 0.482020 3_1:-82859837 None:intergenic
GGATATTCTTTGACACCTAC+GGG 0.485801 3_1:+82859775 Msa0380910:CDS
ACTCAATATTGGATTTGGAA+TGG 0.488555 3_1:+82858723 Msa0380910:CDS
TATGAGCTTCTTCTCAATGC+TGG 0.492065 3_1:+82858250 Msa0380910:CDS
TTCTTCAATGGCCTTTGTGG+TGG 0.493941 3_1:+82859870 Msa0380910:CDS
GTTGGGAACAATTGCTAGGA+AGG 0.504005 3_1:+82858540 Msa0380910:CDS
TTATGATTATTTGGAAGATA+GGG 0.505378 3_1:+82858585 Msa0380910:CDS
GGAGAGAAGGATGTCGAGGA+TGG 0.507596 3_1:-82858146 None:intergenic
CTCGACATCCTTCTCTCCGC+CGG 0.511422 3_1:+82858151 Msa0380910:CDS
TCAACAATGGTATGTTTCAC+AGG 0.511587 3_1:-82858778 None:intergenic
AAGGTGTCAAACACAGATAC+TGG 0.517912 3_1:+82860012 Msa0380910:CDS
TCTCCCTGTATTGTTGAAGC+CGG 0.518751 3_1:+82859833 Msa0380910:CDS
GGCATGGGAGAAGCCATTGA+TGG 0.521455 3_1:+82858660 Msa0380910:CDS
TATTCGATCTGAATTAGTGT+TGG 0.521798 3_1:+82858522 Msa0380910:CDS
CATATGTTTCAAGCTGAGAC+AGG 0.523440 3_1:-82858891 None:intergenic
TCTCCTTCCAACCTTTCCGC+CGG 0.523539 3_1:+82858193 Msa0380910:CDS
CTCTTGAGCTTGAGAATTTG+GGG 0.525010 3_1:+82859931 Msa0380910:CDS
AAACAATCCTTAACAGGCAA+TGG 0.525589 3_1:-82859972 None:intergenic
CTCCCTGTATTGTTGAAGCC+GGG 0.525798 3_1:+82859834 Msa0380910:CDS
GTTACTCATTTCGACGGCGA+TGG 0.526133 3_1:+82858082 Msa0380910:CDS
TTAGAGTGGCGCAAAGATGA+AGG 0.530591 3_1:+82857985 Msa0380910:exon
AAAGCTGTTTGTTCAGGAGG+TGG 0.540005 3_1:+82858694 Msa0380910:CDS
AAGGAGCACCGGCGGAGAGA+AGG 0.543782 3_1:-82858159 None:intergenic
TAGTGTTGGGAACAATTGCT+AGG 0.547152 3_1:+82858536 Msa0380910:CDS
AGCATACGTTCATAAACCTC+AGG 0.548913 3_1:-82858808 None:intergenic
GCTAAAGCTGTTTGTTCAGG+AGG 0.553788 3_1:+82858691 Msa0380910:CDS
TCTCAGCTTGAAACATATGA+TGG 0.557266 3_1:+82858895 Msa0380910:CDS
TCAACAATACAGGGAGATGT+TGG 0.557688 3_1:-82859827 None:intergenic
TTGCGAAATCACCGGCGGAA+AGG 0.562943 3_1:-82858204 None:intergenic
GGATGTCGAGGATGGGTGCA+TGG 0.563108 3_1:-82858138 None:intergenic
GAAATGAGTAACGTCGGCAC+CGG 0.571997 3_1:-82858071 None:intergenic
GATTAAAGGTGAGACGGAGA+AGG 0.572642 3_1:+82858030 Msa0380910:CDS
CTTATGCTCGCCGCAAAGCA+CGG 0.574060 3_1:+82858115 Msa0380910:CDS
GCCGACGTTACTCATTTCGA+CGG 0.576572 3_1:+82858076 Msa0380910:CDS
GAGAGAAGGATGTCGAGGAT+GGG 0.580848 3_1:-82858145 None:intergenic
GAAATCACCGGCGGAAAGGT+TGG 0.582456 3_1:-82858200 None:intergenic
TTCTTGCATTGCGAAATCAC+CGG 0.583608 3_1:-82858212 None:intergenic
AAGAGCGTTCCAAGGAGCAC+CGG 0.584379 3_1:-82858170 None:intergenic
CACCCGGCTTCAACAATACA+GGG 0.584983 3_1:-82859836 None:intergenic
ACAATACAGGGAGATGTTGG+TGG 0.586371 3_1:-82859824 None:intergenic
GTAAAGTCTATTATTGACTC+CGG 0.590503 3_1:+82858052 Msa0380910:CDS
GAAGGAGAAAGAGCGTTCCA+AGG 0.591032 3_1:-82858178 None:intergenic
TCGCACGGGTTGGGGTGAGA+AGG 0.593861 3_1:+82858831 Msa0380910:CDS
CATTGTTGAGGCTCATCCTG+AGG 0.595016 3_1:+82858792 Msa0380910:CDS
AGCGTTCCAAGGAGCACCGG+CGG 0.601767 3_1:-82858167 None:intergenic
TGAGAGTAAAGCTGTGATGA+TGG 0.605332 3_1:+82858639 Msa0380910:CDS
TATGAACGTATGCTTCGCAC+GGG 0.607053 3_1:+82858817 Msa0380910:CDS
TCACCGGCGGAAAGGTTGGA+AGG 0.609268 3_1:-82858196 None:intergenic
CCAAGTGGCAGTAAACAACA+TGG 0.611294 3_1:-82859905 None:intergenic
GGTGATTTCGCAATGCAAGA+AGG 0.613606 3_1:+82858214 Msa0380910:CDS
TTATGAACGTATGCTTCGCA+CGG 0.616186 3_1:+82858816 Msa0380910:CDS
CCTGTATTGTTGAAGCCGGG+TGG 0.618155 3_1:+82859837 Msa0380910:CDS
GTAAAGCTGTGATGATGGCA+TGG 0.618846 3_1:+82858644 Msa0380910:CDS
CGGCGGAGAGAAGGATGTCG+AGG 0.626647 3_1:-82858150 None:intergenic
AAGAAAGAGTATATTCCACC+CGG 0.629337 3_1:-82859852 None:intergenic
TGCCTGTTAAGGATTGTTTG+GGG 0.632646 3_1:+82859976 Msa0380910:CDS
GGCGGCGATTAAAGGTGAGA+CGG 0.637047 3_1:+82858024 Msa0380910:CDS
ATGGGAGAAGCCATTGATGG+AGG 0.639979 3_1:+82858663 Msa0380910:CDS
GCCTGTTAAGGATTGTTTGG+GGG 0.641124 3_1:+82859977 Msa0380910:CDS
AGGCAATGGAATTAATTGTG+TGG 0.643792 3_1:-82859958 None:intergenic
GAAGGAAGAAGAACTATGCG+AGG 0.647053 3_1:+82858003 Msa0380910:CDS
CTCAGGATGAGCCTCAACAA+TGG 0.655173 3_1:-82858791 None:intergenic
TGTGAAACATACCATTGTTG+AGG 0.661097 3_1:+82858780 Msa0380910:CDS
ATTATGAGCTTAGTGTACAT+GGG 0.665478 3_1:+82860291 Msa0380910:three_prime_UTR
AATGCTGAGTAAGCTTAGAG+TGG 0.673677 3_1:+82857971 Msa0380910:five_prime_UTR
TAAAGCTGTGATGATGGCAT+GGG 0.687762 3_1:+82858645 Msa0380910:CDS
TTGCATTGCGAAATCACCGG+CGG 0.690041 3_1:-82858209 None:intergenic
AAAATGCATTACCACCACAA+AGG 0.694739 3_1:-82859881 None:intergenic
CAAGCTCAAGAGATACCAAG+TGG 0.699247 3_1:-82859920 None:intergenic
GCCGTCGAAATGAGTAACGT+CGG 0.710374 3_1:-82858077 None:intergenic
GGAAGAAGAACTATGCGAGG+CGG 0.711413 3_1:+82858006 Msa0380910:CDS
CATCTGCAGACTGACAAACA+GGG 0.712802 3_1:-82860055 None:intergenic
GTCGTCATAGTACTCCCCGT+AGG 0.723736 3_1:-82859790 None:intergenic
GATATTCTTTGACACCTACG+GGG 0.737280 3_1:+82859776 Msa0380910:CDS
CTGCAGACTGACAAACAGGG+AGG 0.782216 3_1:-82860052 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTCAAAATTTTATTACAT+TGG + chr3_1:82860221-82860240 Msa0380910:three_prime_UTR 10.0%
!!! TTTCAAAATTTTATTACATT+GGG + chr3_1:82860222-82860241 Msa0380910:three_prime_UTR 10.0%
!!! ATTTCAAAATTTTATTACAT+TGG + chr3_1:82860221-82860240 Msa0380910:three_prime_UTR 10.0%
!!! TTTCAAAATTTTATTACATT+GGG + chr3_1:82860222-82860241 Msa0380910:three_prime_UTR 10.0%
!! AAAAAGAAAATCAAAACAAA+TGG - chr3_1:82859752-82859771 None:intergenic 15.0%
!! AAAAAGAAAATCAAAACAAA+TGG - chr3_1:82859752-82859771 None:intergenic 15.0%
!!! TCATTTTCACAAATTATTAC+CGG - chr3_1:82858348-82858367 None:intergenic 20.0%
!!! TTTGTGTATTTTACTTTGTT+AGG + chr3_1:82858499-82858518 Msa0380910:intron 20.0%
!! TTATGATTATTTGGAAGATA+GGG + chr3_1:82858585-82858604 Msa0380910:CDS 20.0%
!!! TTTTAGTGAAGATAAAGTAA+TGG + chr3_1:82858612-82858631 Msa0380910:CDS 20.0%
!!! AATAGAATTGATTTCGTAAA+AGG + chr3_1:82859047-82859066 Msa0380910:intron 20.0%
!! AACTTAAATACAAATGCTTA+TGG + chr3_1:82859074-82859093 Msa0380910:intron 20.0%
!! AAAAAAAAAACAGCAGTAAT+AGG + chr3_1:82859205-82859224 Msa0380910:intron 20.0%
!! AAAAAAAAACAGCAGTAATA+GGG + chr3_1:82859206-82859225 Msa0380910:intron 20.0%
!!! TTGTTTTGATTTTCTTTTTC+AGG + chr3_1:82859753-82859772 Msa0380910:intron 20.0%
!!! TGTTTTGATTTTCTTTTTCA+GGG + chr3_1:82859754-82859773 Msa0380910:intron 20.0%
!!! GATTTTTTAGTTTTGAATGT+AGG + chr3_1:82860087-82860106 Msa0380910:exon 20.0%
!!! TCATTTTCACAAATTATTAC+CGG - chr3_1:82858348-82858367 None:intergenic 20.0%
!!! TTTGTGTATTTTACTTTGTT+AGG + chr3_1:82858499-82858518 Msa0380910:intron 20.0%
!! TTATGATTATTTGGAAGATA+GGG + chr3_1:82858585-82858604 Msa0380910:CDS 20.0%
!!! TTTTAGTGAAGATAAAGTAA+TGG + chr3_1:82858612-82858631 Msa0380910:CDS 20.0%
!!! AATAGAATTGATTTCGTAAA+AGG + chr3_1:82859047-82859066 Msa0380910:intron 20.0%
!! AACTTAAATACAAATGCTTA+TGG + chr3_1:82859074-82859093 Msa0380910:intron 20.0%
!! AAAAAAAAAACAGCAGTAAT+AGG + chr3_1:82859205-82859224 Msa0380910:intron 20.0%
!! AAAAAAAAACAGCAGTAATA+GGG + chr3_1:82859206-82859225 Msa0380910:intron 20.0%
!!! TTGTTTTGATTTTCTTTTTC+AGG + chr3_1:82859753-82859772 Msa0380910:intron 20.0%
!!! TGTTTTGATTTTCTTTTTCA+GGG + chr3_1:82859754-82859773 Msa0380910:intron 20.0%
!!! GATTTTTTAGTTTTGAATGT+AGG + chr3_1:82860087-82860106 Msa0380910:exon 20.0%
! TGTTTAACACTAACATGTAT+TGG + chr3_1:82858409-82858428 Msa0380910:intron 25.0%
! ATCTTCCAAATAATCATAAC+CGG - chr3_1:82858584-82858603 None:intergenic 25.0%
! GTTATGATTATTTGGAAGAT+AGG + chr3_1:82858584-82858603 Msa0380910:CDS 25.0%
!! GAAAATGTTCAGATCATTTT+TGG + chr3_1:82858853-82858872 Msa0380910:CDS 25.0%
! TTTCACAAAGGAAAAAACTT+AGG - chr3_1:82859246-82859265 None:intergenic 25.0%
! TTTCCTTTGTGAAATTTATG+TGG + chr3_1:82859252-82859271 Msa0380910:intron 25.0%
! TAACCACATAAATTTCACAA+AGG - chr3_1:82859258-82859277 None:intergenic 25.0%
!! TGGTTACAATTTAGTTTCTA+AGG + chr3_1:82859272-82859291 Msa0380910:intron 25.0%
!! GGTTACAATTTAGTTTCTAA+GGG + chr3_1:82859273-82859292 Msa0380910:intron 25.0%
! ATTAAAAGTAGCATCTATGT+TGG - chr3_1:82859369-82859388 None:intergenic 25.0%
!! TCTAATCAAACTAAGTATTG+AGG + chr3_1:82859393-82859412 Msa0380910:intron 25.0%
! TTAGTGAAAATACATGTCTT+TGG - chr3_1:82859444-82859463 None:intergenic 25.0%
!!! AAGTGTTTTTGTTTTATCAG+TGG - chr3_1:82859507-82859526 None:intergenic 25.0%
! TTACTTAATGTTAAAAAGCC+AGG + chr3_1:82859525-82859544 Msa0380910:intron 25.0%
! TTTGCTTATGTGAAAAACAT+AGG + chr3_1:82859651-82859670 Msa0380910:intron 25.0%
! TTGCTTATGTGAAAAACATA+GGG + chr3_1:82859652-82859671 Msa0380910:intron 25.0%
! TGTTTAACACTAACATGTAT+TGG + chr3_1:82858409-82858428 Msa0380910:intron 25.0%
! ATCTTCCAAATAATCATAAC+CGG - chr3_1:82858584-82858603 None:intergenic 25.0%
! GTTATGATTATTTGGAAGAT+AGG + chr3_1:82858584-82858603 Msa0380910:CDS 25.0%
!! GAAAATGTTCAGATCATTTT+TGG + chr3_1:82858853-82858872 Msa0380910:CDS 25.0%
! TTTCACAAAGGAAAAAACTT+AGG - chr3_1:82859246-82859265 None:intergenic 25.0%
! TTTCCTTTGTGAAATTTATG+TGG + chr3_1:82859252-82859271 Msa0380910:intron 25.0%
! TAACCACATAAATTTCACAA+AGG - chr3_1:82859258-82859277 None:intergenic 25.0%
!! TGGTTACAATTTAGTTTCTA+AGG + chr3_1:82859272-82859291 Msa0380910:intron 25.0%
!! GGTTACAATTTAGTTTCTAA+GGG + chr3_1:82859273-82859292 Msa0380910:intron 25.0%
! ATTAAAAGTAGCATCTATGT+TGG - chr3_1:82859369-82859388 None:intergenic 25.0%
!! TCTAATCAAACTAAGTATTG+AGG + chr3_1:82859393-82859412 Msa0380910:intron 25.0%
! TTAGTGAAAATACATGTCTT+TGG - chr3_1:82859444-82859463 None:intergenic 25.0%
!!! AAGTGTTTTTGTTTTATCAG+TGG - chr3_1:82859507-82859526 None:intergenic 25.0%
! TTACTTAATGTTAAAAAGCC+AGG + chr3_1:82859525-82859544 Msa0380910:intron 25.0%
! TTTGCTTATGTGAAAAACAT+AGG + chr3_1:82859651-82859670 Msa0380910:intron 25.0%
! TTGCTTATGTGAAAAACATA+GGG + chr3_1:82859652-82859671 Msa0380910:intron 25.0%
!! GTAAAGTCTATTATTGACTC+CGG + chr3_1:82858052-82858071 Msa0380910:CDS 30.0%
ATAGTTAATTAGACACAGAG+TGG - chr3_1:82858289-82858308 None:intergenic 30.0%
TATTCGATCTGAATTAGTGT+TGG + chr3_1:82858522-82858541 Msa0380910:CDS 30.0%
ATTCGATCTGAATTAGTGTT+GGG + chr3_1:82858523-82858542 Msa0380910:CDS 30.0%
TGATTCCGGTTATGATTATT+TGG + chr3_1:82858576-82858595 Msa0380910:CDS 30.0%
CATGTACTCAATATTGGATT+TGG + chr3_1:82858718-82858737 Msa0380910:CDS 30.0%
ACTCAATATTGGATTTGGAA+TGG + chr3_1:82858723-82858742 Msa0380910:CDS 30.0%
! CTCAATATTGGATTTGGAAT+GGG + chr3_1:82858724-82858743 Msa0380910:CDS 30.0%
TGCTGAAATTAAACATGTAC+TGG - chr3_1:82858962-82858981 None:intergenic 30.0%
ATTTCAGCACTAGAATTGAT+TGG + chr3_1:82858973-82858992 Msa0380910:intron 30.0%
TTTCAGCACTAGAATTGATT+GGG + chr3_1:82858974-82858993 Msa0380910:intron 30.0%
TAAGGGAAGTTGTTTATGAT+TGG + chr3_1:82859290-82859309 Msa0380910:intron 30.0%
! TACTATTTTGCAACGGTATT+TGG + chr3_1:82859577-82859596 Msa0380910:intron 30.0%
TTATGTGAAAAACATAGGGA+AGG + chr3_1:82859656-82859675 Msa0380910:intron 30.0%
GGAATATACTCTTTCTTCAA+TGG + chr3_1:82859858-82859877 Msa0380910:CDS 30.0%
ATTAATTCCATTGCCTGTTA+AGG + chr3_1:82859965-82859984 Msa0380910:CDS 30.0%
! ATTGTTGCTTGTGTAACTTA+TGG + chr3_1:82860153-82860172 Msa0380910:three_prime_UTR 30.0%
TATGGTATTTGTAAGAGAAC+AGG + chr3_1:82860171-82860190 Msa0380910:three_prime_UTR 30.0%
AATTATGAGCTTAGTGTACA+TGG + chr3_1:82860290-82860309 Msa0380910:three_prime_UTR 30.0%
ATTATGAGCTTAGTGTACAT+GGG + chr3_1:82860291-82860310 Msa0380910:three_prime_UTR 30.0%
!! GTAAAGTCTATTATTGACTC+CGG + chr3_1:82858052-82858071 Msa0380910:CDS 30.0%
ATAGTTAATTAGACACAGAG+TGG - chr3_1:82858289-82858308 None:intergenic 30.0%
TATTCGATCTGAATTAGTGT+TGG + chr3_1:82858522-82858541 Msa0380910:CDS 30.0%
ATTCGATCTGAATTAGTGTT+GGG + chr3_1:82858523-82858542 Msa0380910:CDS 30.0%
TGATTCCGGTTATGATTATT+TGG + chr3_1:82858576-82858595 Msa0380910:CDS 30.0%
CATGTACTCAATATTGGATT+TGG + chr3_1:82858718-82858737 Msa0380910:CDS 30.0%
ACTCAATATTGGATTTGGAA+TGG + chr3_1:82858723-82858742 Msa0380910:CDS 30.0%
! CTCAATATTGGATTTGGAAT+GGG + chr3_1:82858724-82858743 Msa0380910:CDS 30.0%
TGCTGAAATTAAACATGTAC+TGG - chr3_1:82858962-82858981 None:intergenic 30.0%
ATTTCAGCACTAGAATTGAT+TGG + chr3_1:82858973-82858992 Msa0380910:intron 30.0%
TTTCAGCACTAGAATTGATT+GGG + chr3_1:82858974-82858993 Msa0380910:intron 30.0%
TAAGGGAAGTTGTTTATGAT+TGG + chr3_1:82859290-82859309 Msa0380910:intron 30.0%
! TACTATTTTGCAACGGTATT+TGG + chr3_1:82859577-82859596 Msa0380910:intron 30.0%
TTATGTGAAAAACATAGGGA+AGG + chr3_1:82859656-82859675 Msa0380910:intron 30.0%
GGAATATACTCTTTCTTCAA+TGG + chr3_1:82859858-82859877 Msa0380910:CDS 30.0%
ATTAATTCCATTGCCTGTTA+AGG + chr3_1:82859965-82859984 Msa0380910:CDS 30.0%
! ATTGTTGCTTGTGTAACTTA+TGG + chr3_1:82860153-82860172 Msa0380910:three_prime_UTR 30.0%
TATGGTATTTGTAAGAGAAC+AGG + chr3_1:82860171-82860190 Msa0380910:three_prime_UTR 30.0%
AATTATGAGCTTAGTGTACA+TGG + chr3_1:82860290-82860309 Msa0380910:three_prime_UTR 30.0%
ATTATGAGCTTAGTGTACAT+GGG + chr3_1:82860291-82860310 Msa0380910:three_prime_UTR 30.0%
!! GAAAAGAAAAGCACTGATTC+CGG + chr3_1:82858562-82858581 Msa0380910:CDS 35.0%
TCAACAATGGTATGTTTCAC+AGG - chr3_1:82858781-82858800 None:intergenic 35.0%
TGTGAAACATACCATTGTTG+AGG + chr3_1:82858780-82858799 Msa0380910:CDS 35.0%
!!! TTCAGATCATTTTTGGTCGT+TGG + chr3_1:82858860-82858879 Msa0380910:CDS 35.0%
TCTCAGCTTGAAACATATGA+TGG + chr3_1:82858895-82858914 Msa0380910:CDS 35.0%
TCACTAACATCACAGTTGAT+AGG + chr3_1:82859457-82859476 Msa0380910:intron 35.0%
TCAGTGGATAGTATCAGAAT+TGG - chr3_1:82859491-82859510 None:intergenic 35.0%
! TGTGAGCTACTATTTTGCAA+CGG + chr3_1:82859570-82859589 Msa0380910:intron 35.0%
ATAAGCAAAACTTGCATTCC+TGG - chr3_1:82859640-82859659 None:intergenic 35.0%
GTTTGTTTGATTGTAATGCC+TGG + chr3_1:82859685-82859704 Msa0380910:intron 35.0%
TAATGCCTGGTAATTGTAAC+TGG + chr3_1:82859698-82859717 Msa0380910:intron 35.0%
ACAATCCAGTTACAATTACC+AGG - chr3_1:82859706-82859725 None:intergenic 35.0%
! AAGAAAGAGTATATTCCACC+CGG - chr3_1:82859855-82859874 None:intergenic 35.0%
AAAATGCATTACCACCACAA+AGG - chr3_1:82859884-82859903 None:intergenic 35.0%
ATCTCTTGAGCTTGAGAATT+TGG + chr3_1:82859929-82859948 Msa0380910:CDS 35.0%
TCTCTTGAGCTTGAGAATTT+GGG + chr3_1:82859930-82859949 Msa0380910:CDS 35.0%
AGGCAATGGAATTAATTGTG+TGG - chr3_1:82859961-82859980 None:intergenic 35.0%
AAACAATCCTTAACAGGCAA+TGG - chr3_1:82859975-82859994 None:intergenic 35.0%
ATTGCCTGTTAAGGATTGTT+TGG + chr3_1:82859974-82859993 Msa0380910:CDS 35.0%
TTGCCTGTTAAGGATTGTTT+GGG + chr3_1:82859975-82859994 Msa0380910:CDS 35.0%
!! GAAAAGAAAAGCACTGATTC+CGG + chr3_1:82858562-82858581 Msa0380910:CDS 35.0%
TCAACAATGGTATGTTTCAC+AGG - chr3_1:82858781-82858800 None:intergenic 35.0%
TGTGAAACATACCATTGTTG+AGG + chr3_1:82858780-82858799 Msa0380910:CDS 35.0%
!!! TTCAGATCATTTTTGGTCGT+TGG + chr3_1:82858860-82858879 Msa0380910:CDS 35.0%
TCTCAGCTTGAAACATATGA+TGG + chr3_1:82858895-82858914 Msa0380910:CDS 35.0%
TCACTAACATCACAGTTGAT+AGG + chr3_1:82859457-82859476 Msa0380910:intron 35.0%
TCAGTGGATAGTATCAGAAT+TGG - chr3_1:82859491-82859510 None:intergenic 35.0%
! TGTGAGCTACTATTTTGCAA+CGG + chr3_1:82859570-82859589 Msa0380910:intron 35.0%
ATAAGCAAAACTTGCATTCC+TGG - chr3_1:82859640-82859659 None:intergenic 35.0%
GTTTGTTTGATTGTAATGCC+TGG + chr3_1:82859685-82859704 Msa0380910:intron 35.0%
TAATGCCTGGTAATTGTAAC+TGG + chr3_1:82859698-82859717 Msa0380910:intron 35.0%
ACAATCCAGTTACAATTACC+AGG - chr3_1:82859706-82859725 None:intergenic 35.0%
! AAGAAAGAGTATATTCCACC+CGG - chr3_1:82859855-82859874 None:intergenic 35.0%
AAAATGCATTACCACCACAA+AGG - chr3_1:82859884-82859903 None:intergenic 35.0%
ATCTCTTGAGCTTGAGAATT+TGG + chr3_1:82859929-82859948 Msa0380910:CDS 35.0%
TCTCTTGAGCTTGAGAATTT+GGG + chr3_1:82859930-82859949 Msa0380910:CDS 35.0%
AGGCAATGGAATTAATTGTG+TGG - chr3_1:82859961-82859980 None:intergenic 35.0%
AAACAATCCTTAACAGGCAA+TGG - chr3_1:82859975-82859994 None:intergenic 35.0%
ATTGCCTGTTAAGGATTGTT+TGG + chr3_1:82859974-82859993 Msa0380910:CDS 35.0%
TTGCCTGTTAAGGATTGTTT+GGG + chr3_1:82859975-82859994 Msa0380910:CDS 35.0%
AATGCTGAGTAAGCTTAGAG+TGG + chr3_1:82857971-82857990 Msa0380910:five_prime_UTR 40.0%
TTCTTGCATTGCGAAATCAC+CGG - chr3_1:82858215-82858234 None:intergenic 40.0%
GAAGAAGCTCATAAGCTTCT+TGG - chr3_1:82858243-82858262 None:intergenic 40.0%
TATGAGCTTCTTCTCAATGC+TGG + chr3_1:82858250-82858269 Msa0380910:CDS 40.0%
GACACAGAGTGGTTTGAATT+TGG - chr3_1:82858278-82858297 None:intergenic 40.0%
! ATGCCTTCCATTAGAAGTGT+CGG + chr3_1:82858435-82858454 Msa0380910:intron 40.0%
!! AATAGCACCGACACTTCTAA+TGG - chr3_1:82858445-82858464 None:intergenic 40.0%
! TAGTGTTGGGAACAATTGCT+AGG + chr3_1:82858536-82858555 Msa0380910:CDS 40.0%
TGAGAGTAAAGCTGTGATGA+TGG + chr3_1:82858639-82858658 Msa0380910:CDS 40.0%
!! TAAAGCTGTGATGATGGCAT+GGG + chr3_1:82858645-82858664 Msa0380910:CDS 40.0%
CATGCTAAAGCTGTTTGTTC+AGG + chr3_1:82858688-82858707 Msa0380910:CDS 40.0%
GGTGGTCATGTACTCAATAT+TGG + chr3_1:82858712-82858731 Msa0380910:CDS 40.0%
AGCATACGTTCATAAACCTC+AGG - chr3_1:82858811-82858830 None:intergenic 40.0%
TTATGAACGTATGCTTCGCA+CGG + chr3_1:82858816-82858835 Msa0380910:CDS 40.0%
CATATGTTTCAAGCTGAGAC+AGG - chr3_1:82858894-82858913 None:intergenic 40.0%
TGTGTGACTTAAGAATTGCC+TGG - chr3_1:82859546-82859565 None:intergenic 40.0%
GGGATATTCTTTGACACCTA+CGG + chr3_1:82859774-82859793 Msa0380910:intron 40.0%
GGATATTCTTTGACACCTAC+GGG + chr3_1:82859775-82859794 Msa0380910:CDS 40.0%
GATATTCTTTGACACCTACG+GGG + chr3_1:82859776-82859795 Msa0380910:CDS 40.0%
TCAACAATACAGGGAGATGT+TGG - chr3_1:82859830-82859849 None:intergenic 40.0%
TCTTTCTTCAATGGCCTTTG+TGG + chr3_1:82859867-82859886 Msa0380910:CDS 40.0%
CTCTTGAGCTTGAGAATTTG+GGG + chr3_1:82859931-82859950 Msa0380910:CDS 40.0%
TGCCTGTTAAGGATTGTTTG+GGG + chr3_1:82859976-82859995 Msa0380910:CDS 40.0%
ATTGTTTGGGGGAAGAAGTT+TGG + chr3_1:82859988-82860007 Msa0380910:CDS 40.0%
TTGTTTGGGGGAAGAAGTTT+GGG + chr3_1:82859989-82860008 Msa0380910:CDS 40.0%
! AAGGTGTCAAACACAGATAC+TGG + chr3_1:82860012-82860031 Msa0380910:CDS 40.0%
AATGCTGAGTAAGCTTAGAG+TGG + chr3_1:82857971-82857990 Msa0380910:five_prime_UTR 40.0%
TTCTTGCATTGCGAAATCAC+CGG - chr3_1:82858215-82858234 None:intergenic 40.0%
GAAGAAGCTCATAAGCTTCT+TGG - chr3_1:82858243-82858262 None:intergenic 40.0%
TATGAGCTTCTTCTCAATGC+TGG + chr3_1:82858250-82858269 Msa0380910:CDS 40.0%
GACACAGAGTGGTTTGAATT+TGG - chr3_1:82858278-82858297 None:intergenic 40.0%
! ATGCCTTCCATTAGAAGTGT+CGG + chr3_1:82858435-82858454 Msa0380910:intron 40.0%
!! AATAGCACCGACACTTCTAA+TGG - chr3_1:82858445-82858464 None:intergenic 40.0%
! TAGTGTTGGGAACAATTGCT+AGG + chr3_1:82858536-82858555 Msa0380910:CDS 40.0%
TGAGAGTAAAGCTGTGATGA+TGG + chr3_1:82858639-82858658 Msa0380910:CDS 40.0%
!! TAAAGCTGTGATGATGGCAT+GGG + chr3_1:82858645-82858664 Msa0380910:CDS 40.0%
CATGCTAAAGCTGTTTGTTC+AGG + chr3_1:82858688-82858707 Msa0380910:CDS 40.0%
GGTGGTCATGTACTCAATAT+TGG + chr3_1:82858712-82858731 Msa0380910:CDS 40.0%
AGCATACGTTCATAAACCTC+AGG - chr3_1:82858811-82858830 None:intergenic 40.0%
TTATGAACGTATGCTTCGCA+CGG + chr3_1:82858816-82858835 Msa0380910:CDS 40.0%
CATATGTTTCAAGCTGAGAC+AGG - chr3_1:82858894-82858913 None:intergenic 40.0%
TGTGTGACTTAAGAATTGCC+TGG - chr3_1:82859546-82859565 None:intergenic 40.0%
GGGATATTCTTTGACACCTA+CGG + chr3_1:82859774-82859793 Msa0380910:intron 40.0%
GGATATTCTTTGACACCTAC+GGG + chr3_1:82859775-82859794 Msa0380910:CDS 40.0%
GATATTCTTTGACACCTACG+GGG + chr3_1:82859776-82859795 Msa0380910:CDS 40.0%
TCAACAATACAGGGAGATGT+TGG - chr3_1:82859830-82859849 None:intergenic 40.0%
TCTTTCTTCAATGGCCTTTG+TGG + chr3_1:82859867-82859886 Msa0380910:CDS 40.0%
CTCTTGAGCTTGAGAATTTG+GGG + chr3_1:82859931-82859950 Msa0380910:CDS 40.0%
TGCCTGTTAAGGATTGTTTG+GGG + chr3_1:82859976-82859995 Msa0380910:CDS 40.0%
ATTGTTTGGGGGAAGAAGTT+TGG + chr3_1:82859988-82860007 Msa0380910:CDS 40.0%
TTGTTTGGGGGAAGAAGTTT+GGG + chr3_1:82859989-82860008 Msa0380910:CDS 40.0%
! AAGGTGTCAAACACAGATAC+TGG + chr3_1:82860012-82860031 Msa0380910:CDS 40.0%
TTAGAGTGGCGCAAAGATGA+AGG + chr3_1:82857985-82858004 Msa0380910:exon 45.0%
GAAGGAAGAAGAACTATGCG+AGG + chr3_1:82858003-82858022 Msa0380910:CDS 45.0%
GATTAAAGGTGAGACGGAGA+AGG + chr3_1:82858030-82858049 Msa0380910:CDS 45.0%
GGTGATTTCGCAATGCAAGA+AGG + chr3_1:82858214-82858233 Msa0380910:CDS 45.0%
GTTAGTGTCAGTTTCGTGTC+AGG - chr3_1:82858316-82858335 None:intergenic 45.0%
TGACACTAACACGTCAACAC+CGG + chr3_1:82858326-82858345 Msa0380910:intron 45.0%
GTTGGGAACAATTGCTAGGA+AGG + chr3_1:82858540-82858559 Msa0380910:CDS 45.0%
!! GTAAAGCTGTGATGATGGCA+TGG + chr3_1:82858644-82858663 Msa0380910:CDS 45.0%
TTAGCATGAGCCTCCATCAA+TGG - chr3_1:82858676-82858695 None:intergenic 45.0%
GCTAAAGCTGTTTGTTCAGG+AGG + chr3_1:82858691-82858710 Msa0380910:CDS 45.0%
AAAGCTGTTTGTTCAGGAGG+TGG + chr3_1:82858694-82858713 Msa0380910:CDS 45.0%
TATGAACGTATGCTTCGCAC+GGG + chr3_1:82858817-82858836 Msa0380910:CDS 45.0%
!! TGCATTCCTGGAAAGCATCT+GGG - chr3_1:82859628-82859647 None:intergenic 45.0%
!! TTGCATTCCTGGAAAGCATC+TGG - chr3_1:82859629-82859648 None:intergenic 45.0%
TGCCTCTAAACTCTTTGACG+TGG + chr3_1:82859725-82859744 Msa0380910:intron 45.0%
GCCTCTAAACTCTTTGACGT+GGG + chr3_1:82859726-82859745 Msa0380910:intron 45.0%
ACAATACAGGGAGATGTTGG+TGG - chr3_1:82859827-82859846 None:intergenic 45.0%
TCTCCCTGTATTGTTGAAGC+CGG + chr3_1:82859833-82859852 Msa0380910:CDS 45.0%
TTCTTCAATGGCCTTTGTGG+TGG + chr3_1:82859870-82859889 Msa0380910:CDS 45.0%
CCAAGTGGCAGTAAACAACA+TGG - chr3_1:82859908-82859927 None:intergenic 45.0%
! CCATGTTGTTTACTGCCACT+TGG + chr3_1:82859905-82859924 Msa0380910:CDS 45.0%
CAAGCTCAAGAGATACCAAG+TGG - chr3_1:82859923-82859942 None:intergenic 45.0%
GCCTGTTAAGGATTGTTTGG+GGG + chr3_1:82859977-82859996 Msa0380910:CDS 45.0%
TCCCCCAAACAATCCTTAAC+AGG - chr3_1:82859981-82860000 None:intergenic 45.0%
CATCTGCAGACTGACAAACA+GGG - chr3_1:82860058-82860077 None:intergenic 45.0%
TCATCTGCAGACTGACAAAC+AGG - chr3_1:82860059-82860078 None:intergenic 45.0%
TTAGAGTGGCGCAAAGATGA+AGG + chr3_1:82857985-82858004 Msa0380910:exon 45.0%
GAAGGAAGAAGAACTATGCG+AGG + chr3_1:82858003-82858022 Msa0380910:CDS 45.0%
GATTAAAGGTGAGACGGAGA+AGG + chr3_1:82858030-82858049 Msa0380910:CDS 45.0%
GGTGATTTCGCAATGCAAGA+AGG + chr3_1:82858214-82858233 Msa0380910:CDS 45.0%
GTTAGTGTCAGTTTCGTGTC+AGG - chr3_1:82858316-82858335 None:intergenic 45.0%
TGACACTAACACGTCAACAC+CGG + chr3_1:82858326-82858345 Msa0380910:intron 45.0%
GTTGGGAACAATTGCTAGGA+AGG + chr3_1:82858540-82858559 Msa0380910:CDS 45.0%
!! GTAAAGCTGTGATGATGGCA+TGG + chr3_1:82858644-82858663 Msa0380910:CDS 45.0%
TTAGCATGAGCCTCCATCAA+TGG - chr3_1:82858676-82858695 None:intergenic 45.0%
GCTAAAGCTGTTTGTTCAGG+AGG + chr3_1:82858691-82858710 Msa0380910:CDS 45.0%
AAAGCTGTTTGTTCAGGAGG+TGG + chr3_1:82858694-82858713 Msa0380910:CDS 45.0%
TATGAACGTATGCTTCGCAC+GGG + chr3_1:82858817-82858836 Msa0380910:CDS 45.0%
!! TGCATTCCTGGAAAGCATCT+GGG - chr3_1:82859628-82859647 None:intergenic 45.0%
!! TTGCATTCCTGGAAAGCATC+TGG - chr3_1:82859629-82859648 None:intergenic 45.0%
TGCCTCTAAACTCTTTGACG+TGG + chr3_1:82859725-82859744 Msa0380910:intron 45.0%
GCCTCTAAACTCTTTGACGT+GGG + chr3_1:82859726-82859745 Msa0380910:intron 45.0%
ACAATACAGGGAGATGTTGG+TGG - chr3_1:82859827-82859846 None:intergenic 45.0%
TCTCCCTGTATTGTTGAAGC+CGG + chr3_1:82859833-82859852 Msa0380910:CDS 45.0%
TTCTTCAATGGCCTTTGTGG+TGG + chr3_1:82859870-82859889 Msa0380910:CDS 45.0%
CCAAGTGGCAGTAAACAACA+TGG - chr3_1:82859908-82859927 None:intergenic 45.0%
! CCATGTTGTTTACTGCCACT+TGG + chr3_1:82859905-82859924 Msa0380910:CDS 45.0%
CAAGCTCAAGAGATACCAAG+TGG - chr3_1:82859923-82859942 None:intergenic 45.0%
GCCTGTTAAGGATTGTTTGG+GGG + chr3_1:82859977-82859996 Msa0380910:CDS 45.0%
TCCCCCAAACAATCCTTAAC+AGG - chr3_1:82859981-82860000 None:intergenic 45.0%
CATCTGCAGACTGACAAACA+GGG - chr3_1:82860058-82860077 None:intergenic 45.0%
TCATCTGCAGACTGACAAAC+AGG - chr3_1:82860059-82860078 None:intergenic 45.0%
GGAAGAAGAACTATGCGAGG+CGG + chr3_1:82858006-82858025 Msa0380910:CDS 50.0%
GAAATGAGTAACGTCGGCAC+CGG - chr3_1:82858074-82858093 None:intergenic 50.0%
GCCGACGTTACTCATTTCGA+CGG + chr3_1:82858076-82858095 Msa0380910:CDS 50.0%
GCCGTCGAAATGAGTAACGT+CGG - chr3_1:82858080-82858099 None:intergenic 50.0%
GTTACTCATTTCGACGGCGA+TGG + chr3_1:82858082-82858101 Msa0380910:CDS 50.0%
GAGAGAAGGATGTCGAGGAT+GGG - chr3_1:82858148-82858167 None:intergenic 50.0%
!! GAAGGAGAAAGAGCGTTCCA+AGG - chr3_1:82858181-82858200 None:intergenic 50.0%
TTGCATTGCGAAATCACCGG+CGG - chr3_1:82858212-82858231 None:intergenic 50.0%
! GCACCGACACTTCTAATGGA+AGG - chr3_1:82858441-82858460 None:intergenic 50.0%
ATGGGAGAAGCCATTGATGG+AGG + chr3_1:82858663-82858682 Msa0380910:CDS 50.0%
CTCAGGATGAGCCTCAACAA+TGG - chr3_1:82858794-82858813 None:intergenic 50.0%
CATTGTTGAGGCTCATCCTG+AGG + chr3_1:82858792-82858811 Msa0380910:CDS 50.0%
CTGTTTCCCAGATGCTTTCC+AGG + chr3_1:82859619-82859638 Msa0380910:intron 50.0%
GCCCACGTCAAAGAGTTTAG+AGG - chr3_1:82859730-82859749 None:intergenic 50.0%
CTCCCTGTATTGTTGAAGCC+GGG + chr3_1:82859834-82859853 Msa0380910:CDS 50.0%
CACCCGGCTTCAACAATACA+GGG - chr3_1:82859839-82859858 None:intergenic 50.0%
TTGGGGGAAGAAGTTTGGGA+AGG + chr3_1:82859993-82860012 Msa0380910:CDS 50.0%
GGAAGAAGAACTATGCGAGG+CGG + chr3_1:82858006-82858025 Msa0380910:CDS 50.0%
GAAATGAGTAACGTCGGCAC+CGG - chr3_1:82858074-82858093 None:intergenic 50.0%
GCCGACGTTACTCATTTCGA+CGG + chr3_1:82858076-82858095 Msa0380910:CDS 50.0%
GCCGTCGAAATGAGTAACGT+CGG - chr3_1:82858080-82858099 None:intergenic 50.0%
GTTACTCATTTCGACGGCGA+TGG + chr3_1:82858082-82858101 Msa0380910:CDS 50.0%
GAGAGAAGGATGTCGAGGAT+GGG - chr3_1:82858148-82858167 None:intergenic 50.0%
!! GAAGGAGAAAGAGCGTTCCA+AGG - chr3_1:82858181-82858200 None:intergenic 50.0%
TTGCATTGCGAAATCACCGG+CGG - chr3_1:82858212-82858231 None:intergenic 50.0%
! GCACCGACACTTCTAATGGA+AGG - chr3_1:82858441-82858460 None:intergenic 50.0%
ATGGGAGAAGCCATTGATGG+AGG + chr3_1:82858663-82858682 Msa0380910:CDS 50.0%
CTCAGGATGAGCCTCAACAA+TGG - chr3_1:82858794-82858813 None:intergenic 50.0%
CATTGTTGAGGCTCATCCTG+AGG + chr3_1:82858792-82858811 Msa0380910:CDS 50.0%
CTGTTTCCCAGATGCTTTCC+AGG + chr3_1:82859619-82859638 Msa0380910:intron 50.0%
GCCCACGTCAAAGAGTTTAG+AGG - chr3_1:82859730-82859749 None:intergenic 50.0%
CTCCCTGTATTGTTGAAGCC+GGG + chr3_1:82859834-82859853 Msa0380910:CDS 50.0%
CACCCGGCTTCAACAATACA+GGG - chr3_1:82859839-82859858 None:intergenic 50.0%
TTGGGGGAAGAAGTTTGGGA+AGG + chr3_1:82859993-82860012 Msa0380910:CDS 50.0%
CTATGCGAGGCGGCGATTAA+AGG + chr3_1:82858016-82858035 Msa0380910:CDS 55.0%
GGCGGCGATTAAAGGTGAGA+CGG + chr3_1:82858024-82858043 Msa0380910:CDS 55.0%
TGCTTTGCGGCGAGCATAAG+AGG - chr3_1:82858115-82858134 None:intergenic 55.0%
CTTATGCTCGCCGCAAAGCA+CGG + chr3_1:82858115-82858134 Msa0380910:CDS 55.0%
GGAGAGAAGGATGTCGAGGA+TGG - chr3_1:82858149-82858168 None:intergenic 55.0%
!! AAGAGCGTTCCAAGGAGCAC+CGG - chr3_1:82858173-82858192 None:intergenic 55.0%
TCTCCTTCCAACCTTTCCGC+CGG + chr3_1:82858193-82858212 Msa0380910:CDS 55.0%
GAAATCACCGGCGGAAAGGT+TGG - chr3_1:82858203-82858222 None:intergenic 55.0%
TTGCGAAATCACCGGCGGAA+AGG - chr3_1:82858207-82858226 None:intergenic 55.0%
GGCATGGGAGAAGCCATTGA+TGG + chr3_1:82858660-82858679 Msa0380910:CDS 55.0%
AACGTATGCTTCGCACGGGT+TGG + chr3_1:82858821-82858840 Msa0380910:CDS 55.0%
ACGTATGCTTCGCACGGGTT+GGG + chr3_1:82858822-82858841 Msa0380910:CDS 55.0%
GTCGTCATAGTACTCCCCGT+AGG - chr3_1:82859793-82859812 None:intergenic 55.0%
CCACCCGGCTTCAACAATAC+AGG - chr3_1:82859840-82859859 None:intergenic 55.0%
CCTGTATTGTTGAAGCCGGG+TGG + chr3_1:82859837-82859856 Msa0380910:CDS 55.0%
CTGCAGACTGACAAACAGGG+AGG - chr3_1:82860055-82860074 None:intergenic 55.0%
CTATGCGAGGCGGCGATTAA+AGG + chr3_1:82858016-82858035 Msa0380910:CDS 55.0%
GGCGGCGATTAAAGGTGAGA+CGG + chr3_1:82858024-82858043 Msa0380910:CDS 55.0%
TGCTTTGCGGCGAGCATAAG+AGG - chr3_1:82858115-82858134 None:intergenic 55.0%
CTTATGCTCGCCGCAAAGCA+CGG + chr3_1:82858115-82858134 Msa0380910:CDS 55.0%
GGAGAGAAGGATGTCGAGGA+TGG - chr3_1:82858149-82858168 None:intergenic 55.0%
!! AAGAGCGTTCCAAGGAGCAC+CGG - chr3_1:82858173-82858192 None:intergenic 55.0%
TCTCCTTCCAACCTTTCCGC+CGG + chr3_1:82858193-82858212 Msa0380910:CDS 55.0%
GAAATCACCGGCGGAAAGGT+TGG - chr3_1:82858203-82858222 None:intergenic 55.0%
TTGCGAAATCACCGGCGGAA+AGG - chr3_1:82858207-82858226 None:intergenic 55.0%
GGCATGGGAGAAGCCATTGA+TGG + chr3_1:82858660-82858679 Msa0380910:CDS 55.0%
AACGTATGCTTCGCACGGGT+TGG + chr3_1:82858821-82858840 Msa0380910:CDS 55.0%
ACGTATGCTTCGCACGGGTT+GGG + chr3_1:82858822-82858841 Msa0380910:CDS 55.0%
GTCGTCATAGTACTCCCCGT+AGG - chr3_1:82859793-82859812 None:intergenic 55.0%
CCACCCGGCTTCAACAATAC+AGG - chr3_1:82859840-82859859 None:intergenic 55.0%
CCTGTATTGTTGAAGCCGGG+TGG + chr3_1:82859837-82859856 Msa0380910:CDS 55.0%
CTGCAGACTGACAAACAGGG+AGG - chr3_1:82860055-82860074 None:intergenic 55.0%
GGATGTCGAGGATGGGTGCA+TGG - chr3_1:82858141-82858160 None:intergenic 60.0%
CTCGACATCCTTCTCTCCGC+CGG + chr3_1:82858151-82858170 Msa0380910:CDS 60.0%
TCACCGGCGGAAAGGTTGGA+AGG - chr3_1:82858199-82858218 None:intergenic 60.0%
! CGTATGCTTCGCACGGGTTG+GGG + chr3_1:82858823-82858842 Msa0380910:CDS 60.0%
GGATGTCGAGGATGGGTGCA+TGG - chr3_1:82858141-82858160 None:intergenic 60.0%
CTCGACATCCTTCTCTCCGC+CGG + chr3_1:82858151-82858170 Msa0380910:CDS 60.0%
TCACCGGCGGAAAGGTTGGA+AGG - chr3_1:82858199-82858218 None:intergenic 60.0%
! CGTATGCTTCGCACGGGTTG+GGG + chr3_1:82858823-82858842 Msa0380910:CDS 60.0%
GGGTGCATGGCCGTGCTTTG+CGG - chr3_1:82858128-82858147 None:intergenic 65.0%
CGGCGGAGAGAAGGATGTCG+AGG - chr3_1:82858153-82858172 None:intergenic 65.0%
!! AAGGAGCACCGGCGGAGAGA+AGG - chr3_1:82858162-82858181 None:intergenic 65.0%
TTCTCTCCGCCGGTGCTCCT+TGG + chr3_1:82858161-82858180 Msa0380910:CDS 65.0%
!! AGCGTTCCAAGGAGCACCGG+CGG - chr3_1:82858170-82858189 None:intergenic 65.0%
!! TCGCACGGGTTGGGGTGAGA+AGG + chr3_1:82858831-82858850 Msa0380910:CDS 65.0%
GGGTGCATGGCCGTGCTTTG+CGG - chr3_1:82858128-82858147 None:intergenic 65.0%
CGGCGGAGAGAAGGATGTCG+AGG - chr3_1:82858153-82858172 None:intergenic 65.0%
!! AAGGAGCACCGGCGGAGAGA+AGG - chr3_1:82858162-82858181 None:intergenic 65.0%
TTCTCTCCGCCGGTGCTCCT+TGG + chr3_1:82858161-82858180 Msa0380910:CDS 65.0%
!! AGCGTTCCAAGGAGCACCGG+CGG - chr3_1:82858170-82858189 None:intergenic 65.0%
!! TCGCACGGGTTGGGGTGAGA+AGG + chr3_1:82858831-82858850 Msa0380910:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 82857953 82860315 82857953 ID=Msa0380910;Name=Msa0380910
chr3_1 mRNA 82857953 82860315 82857953 ID=Msa0380910-mRNA-1;Parent=Msa0380910;Name=Msa0380910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=48|1|1|1|1|1|3|227|326
chr3_1 exon 82857953 82858271 82857953 ID=Msa0380910-mRNA-1:exon:21140;Parent=Msa0380910-mRNA-1
chr3_1 exon 82858521 82858916 82858521 ID=Msa0380910-mRNA-1:exon:21141;Parent=Msa0380910-mRNA-1
chr3_1 exon 82859775 82860315 82859775 ID=Msa0380910-mRNA-1:exon:21142;Parent=Msa0380910-mRNA-1
chr3_1 five_prime_UTR 82857953 82858000 82857953 ID=Msa0380910-mRNA-1:five_prime_utr;Parent=Msa0380910-mRNA-1
chr3_1 CDS 82858001 82858271 82858001 ID=Msa0380910-mRNA-1:cds;Parent=Msa0380910-mRNA-1
chr3_1 CDS 82858521 82858916 82858521 ID=Msa0380910-mRNA-1:cds;Parent=Msa0380910-mRNA-1
chr3_1 CDS 82859775 82860088 82859775 ID=Msa0380910-mRNA-1:cds;Parent=Msa0380910-mRNA-1
chr3_1 three_prime_UTR 82860089 82860315 82860089 ID=Msa0380910-mRNA-1:three_prime_utr;Parent=Msa0380910-mRNA-1
Gene Sequence

>Msa0380910

ATGAAGGAAGAAGAACTATGCGAGGCGGCGATTAAAGGTGAGACGGAGAAGGTAAAGTCTATTATTGACTCCGGTGCCGACGTTACTCATTTCGACGGCGATGGTCTCACTCCTCTTATGCTCGCCGCAAAGCACGGCCATGCACCCATCCTCGACATCCTTCTCTCCGCCGGTGCTCCTTGGAACGCTCTTTCTCCTTCCAACCTTTCCGCCGGTGATTTCGCAATGCAAGAAGGTCACCAAGAAGCTTATGAGCTTCTTCTCAATGCTGGTATTCGATCTGAATTAGTGTTGGGAACAATTGCTAGGAAGGAAAAGAAAAGCACTGATTCCGGTTATGATTATTTGGAAGATAGGGTAAGTTTTAGTGAAGATAAAGTAATGGATTCTGAGAGTAAAGCTGTGATGATGGCATGGGAGAAGCCATTGATGGAGGCTCATGCTAAAGCTGTTTGTTCAGGAGGTGGTCATGTACTCAATATTGGATTTGGAATGGGTCTTGTTGATACAGCTATACAACAATATTCACCTGTGAAACATACCATTGTTGAGGCTCATCCTGAGGTTTATGAACGTATGCTTCGCACGGGTTGGGGTGAGAAGGAAAATGTTCAGATCATTTTTGGTCGTTGGCAAGATGTCCTGTCTCAGCTTGAAACATATGATGGGATATTCTTTGACACCTACGGGGAGTACTATGACGACTTGAGAGAGTTCCACCAACATCTCCCTGTATTGTTGAAGCCGGGTGGAATATACTCTTTCTTCAATGGCCTTTGTGGTGGTAATGCATTTTTCCATGTTGTTTACTGCCACTTGGTATCTCTTGAGCTTGAGAATTTGGGGTATTCCACACAATTAATTCCATTGCCTGTTAAGGATTGTTTGGGGGAAGAAGTTTGGGAAGGTGTCAAACACAGATACTGGCAGCTTGATACATACTACCTCCCTGTTTGTCAGTCTGCAGATGACTCTGAGTGA
Protein sequence

>Msa0380910

MKEEELCEAAIKGETEKVKSIIDSGADVTHFDGDGLTPLMLAAKHGHAPILDILLSAGAPWNALSPSNLSAGDFAMQEGHQEAYELLLNAGIRSELVLGTIARKEKKSTDSGYDYLEDRVSFSEDKVMDSESKAVMMAWEKPLMEAHAKAVCSGGGHVLNIGFGMGLVDTAIQQYSPVKHTIVEAHPEVYERMLRTGWGEKENVQIIFGRWQDVLSQLETYDGIFFDTYGEYYDDLREFHQHLPVLLKPGGIYSFFNGLCGGNAFFHVVYCHLVSLELENLGYSTQLIPLPVKDCLGEEVWEGVKHRYWQLDTYYLPVCQSADDSE*