AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0685470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685470 MtrunA17_Chr4g0033751 98.697 307 4 0 1 307 1 307 0.0 625
Msa0685470 MtrunA17_Chr2g0329581 53.333 405 122 13 1 366 1 377 4.19e-103 320
Msa0685470 MtrunA17_Chr6g0475401 63.025 119 44 0 1 119 1 119 6.03e-50 175
Msa0685470 MtrunA17_Chr5g0413621 57.025 121 51 1 1 120 1 121 3.63e-43 157
Msa0685470 MtrunA17_Chr4g0062781 56.667 120 52 0 1 120 1 120 4.48e-42 155
Msa0685470 MtrunA17_Chr4g0033761 100.000 68 0 0 308 375 2 69 1.94e-41 140
Msa0685470 MtrunA17_Chr8g0376751 95.522 67 3 0 309 375 3 69 2.03e-38 132
Msa0685470 MtrunA17_Chr2g0285451 94.118 68 4 0 308 375 2 69 3.75e-38 131
Msa0685470 MtrunA17_Chr7g0216191 91.176 68 6 0 308 375 2 69 1.67e-34 122
Msa0685470 MtrunA17_Chr2g0309091 46.825 126 61 2 1 124 1 122 6.81e-28 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0685470 AT1G08760.1 50.806 372 140 8 1 346 1 355 5.18e-107 331
Msa0685470 AT3G14170.1 61.345 119 46 0 1 119 1 119 3.54e-47 168
Msa0685470 AT3G14170.2 61.345 119 46 0 1 119 1 119 3.71e-47 167
Msa0685470 AT4G13370.1 58.400 125 52 0 1 125 1 125 2.67e-44 162
Msa0685470 AT1G23790.1 57.377 122 51 1 1 121 1 122 8.48e-43 156
Msa0685470 AT1G70340.1 57.500 120 50 1 1 119 1 120 2.31e-41 152
Msa0685470 AT2G43460.1 92.647 68 5 0 308 375 2 69 1.93e-38 132
Msa0685470 AT3G59540.1 92.647 68 5 0 308 375 2 69 1.93e-38 132
Msa0685470 AT3G19610.1 48.333 120 61 1 1 119 29 148 1.46e-36 140
Msa0685470 AT2G31920.1 44.697 132 64 4 1 124 1 131 5.67e-26 109

Find 97 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCTTATATTGAAGTCTTTC+CGG 0.185075 4_4:+49611309 Msa0685470:three_prime_UTR
TCCATTGTCCATTGTTCAAC+TGG 0.204198 4_4:+49607536 Msa0685470:five_prime_UTR
TCTAATTGATTATATAAATA+AGG 0.213408 4_4:-49611280 None:intergenic
CTAAGTCAATAGAGGTTAAT+TGG 0.262257 4_4:+49611356 Msa0685470:three_prime_UTR
CTTACTGTGCTACGAAATTC+AGG 0.277895 4_4:-49608567 None:intergenic
CTTAGAAGATGCCCTTGATT+TGG 0.289921 4_4:-49608532 None:intergenic
TAAGCAAATCAATGAGATTA+AGG 0.290766 4_4:+49610443 Msa0685470:CDS
CGTGGTGTTAGGCCTGTTCC+TGG 0.317826 4_4:+49607961 Msa0685470:CDS
TAGCAATGCTTCTGAGGTTA+AGG 0.340241 4_4:+49608044 Msa0685470:CDS
TGATTCTCCAACACTTTCAT+TGG 0.340325 4_4:-49608099 None:intergenic
TTATTTCTTTAATTCAGATT+TGG 0.342020 4_4:+49607471 Msa0685470:five_prime_UTR
AAAATGGCAAATCTAGTTCC+TGG 0.348238 4_4:+49607661 Msa0685470:exon
CACTTTCATTGGAGAGGACT+TGG 0.357255 4_4:-49608088 None:intergenic
TCAATCAGAAATTTAGTTCA+AGG 0.364637 4_4:+49608435 Msa0685470:CDS
TACTCTTCTAATACTCAAAT+GGG 0.368103 4_4:-49607610 None:intergenic
TTTGCTTCTCTTGATCTTCA+CGG 0.377542 4_4:-49610502 None:intergenic
GGAGATTTGTTTACAAATCA+AGG 0.381180 4_4:+49607790 Msa0685470:CDS
ATTAGATCATCATGTTCATC+AGG 0.391695 4_4:-49607862 None:intergenic
TTCCGATTCTTCGTGGTGTT+AGG 0.393778 4_4:+49607950 Msa0685470:CDS
TTACTCTTCTAATACTCAAA+TGG 0.400158 4_4:-49607611 None:intergenic
CAAAGATGTTGTCAAGTTCA+AGG 0.412153 4_4:+49610521 Msa0685470:CDS
CTTAGTGACAAGATTCAGTT+AGG 0.416620 4_4:+49607886 Msa0685470:CDS
GAGAATTTCTCAAAAGAAGT+AGG 0.433004 4_4:-49608285 None:intergenic
CTAATTGATTATATAAATAA+GGG 0.434933 4_4:-49611279 None:intergenic
CTTCTGAGGTTAAGGTTAAG+AGG 0.436051 4_4:+49608052 Msa0685470:CDS
CTAAGGCGTTGCGGAAAAGC+TGG 0.438960 4_4:+49608472 Msa0685470:CDS
GGGGTGGTGGAGACGGGAAA+GGG 0.448470 4_4:+49608366 Msa0685470:CDS
AGACTTCAATATAAGATAAG+AGG 0.449457 4_4:-49611303 None:intergenic
TTAGTTGCAACAATATCTTC+AGG 0.451042 4_4:-49608006 None:intergenic
TCACTCAGTACACATTTAAC+CGG 0.452174 4_4:-49611126 None:intergenic
ATAAAGAGACATCCAAATCA+AGG 0.456508 4_4:+49608520 Msa0685470:CDS
CCATTGTCCATTGTTCAACT+GGG 0.460721 4_4:+49607537 Msa0685470:five_prime_UTR
GTGAAGATCAAGTGTTGCTT+TGG 0.469681 4_4:+49611145 Msa0685470:three_prime_UTR
GGCCTAACACCACGAAGAAT+CGG 0.472446 4_4:-49607952 None:intergenic
TCGCCTGTTCCGATTCTTCG+TGG 0.478185 4_4:+49607943 Msa0685470:CDS
AGACTTCACATAATTGTCAA+TGG 0.480532 4_4:+49607157 None:intergenic
CAAGCATGTCTCCCAGGAAC+AGG 0.480995 4_4:-49607973 None:intergenic
GCAAGACTTGTAATTCTATC+CGG 0.485897 4_4:+49611107 Msa0685470:exon
TAGCAACTAGTAGGTGAAGA+AGG 0.490380 4_4:-49608255 None:intergenic
CTCCAACACTTTCATTGGAG+AGG 0.497923 4_4:-49608094 None:intergenic
GTTCGCGGAGTTAGTCCTCT+CGG 0.502784 4_4:+49608390 Msa0685470:CDS
GGATAGGCTGATTGCTAAGG+TGG 0.505127 4_4:+49608344 Msa0685470:CDS
AAATCTCCACCTGCTAGTGC+TGG 0.505213 4_4:-49607775 None:intergenic
ACAAAGTGTGTACAAGTACT+TGG 0.506752 4_4:-49610553 None:intergenic
GGCAAAGAATAGCAACTAGT+AGG 0.507800 4_4:-49608264 None:intergenic
AAATGGCAAATCTAGTTCCT+GGG 0.508006 4_4:+49607662 Msa0685470:exon
CTAACTGAATCTTGTCACTA+AGG 0.514275 4_4:-49607885 None:intergenic
TTAGTTCAAGGAATTGAACT+TGG 0.515121 4_4:+49608447 Msa0685470:CDS
AAGCAACAAGGAAATATCAA+TGG 0.517246 4_4:+49608318 Msa0685470:CDS
ACACCACGAAGAATCGGAAC+AGG 0.519947 4_4:-49607946 None:intergenic
AAGGTAGACTATGATAATCA+TGG 0.522596 4_4:-49607182 None:intergenic
GAGACGGGAAAGGGTGTTCG+CGG 0.527317 4_4:+49608375 Msa0685470:CDS
AGCATTGTTCCAGCACTAGC+AGG 0.527702 4_4:+49607766 Msa0685470:CDS
AGGAATTGAACTTGGTGCTA+AGG 0.528575 4_4:+49608455 Msa0685470:CDS
TTAATCTCATTGATTTGCTT+AGG 0.531275 4_4:-49610441 None:intergenic
TTCGCGGAGTTAGTCCTCTC+GGG 0.536295 4_4:+49608391 Msa0685470:CDS
CTTACGACTCTCATTATGAA+TGG 0.536568 4_4:+49611221 Msa0685470:three_prime_UTR
GTCAATAGAGGTTAATTGGA+TGG 0.539702 4_4:+49611360 Msa0685470:three_prime_UTR
ACAAGTAGATAAGAAATCAA+TGG 0.541333 4_4:+49608128 Msa0685470:CDS
TTCACAACCCAGTTGAACAA+TGG 0.547441 4_4:-49607544 None:intergenic
CCTGGGAGACATGCTTGTGT+TGG 0.547891 4_4:+49607979 Msa0685470:CDS
ATGAACACAGACATAAAAGT+TGG 0.550757 4_4:+49607709 Msa0685470:CDS
GAAAAGCTGGGAAGGGAACA+TGG 0.551231 4_4:+49608485 Msa0685470:CDS
GTGGTGTTAGGCCTGTTCCT+GGG 0.553445 4_4:+49607962 Msa0685470:CDS
ATTGTTGCAACTAACTCACT+TGG 0.554897 4_4:+49608015 Msa0685470:CDS
TACTGACAAGAAAATAGAGT+TGG 0.557694 4_4:-49611245 None:intergenic
AGGACTTCCTCCTCACTGCT+AGG 0.557805 4_4:+49610463 Msa0685470:CDS
GAAATATCAATGGAGTGGAT+AGG 0.557954 4_4:+49608328 Msa0685470:CDS
GTCCTCTCCAATGAAAGTGT+TGG 0.558109 4_4:+49608092 Msa0685470:CDS
TCATAATGAGAGTCGTAAGC+TGG 0.559002 4_4:-49611217 None:intergenic
CCTCCTCACTGCTAGGAGGA+AGG 0.566472 4_4:+49610470 Msa0685470:CDS
ATAGGCTGATTGCTAAGGTG+GGG 0.576897 4_4:+49608346 Msa0685470:CDS
AACTAGAAACTAGAAACTGA+TGG 0.578032 4_4:-49607498 None:intergenic
TAGGCTGATTGCTAAGGTGG+GGG 0.578325 4_4:+49608347 Msa0685470:CDS
CTCGGGAAGAGAATTGCAGT+TGG 0.583302 4_4:+49608408 Msa0685470:CDS
CCAACACAAGCATGTCTCCC+AGG 0.583666 4_4:-49607979 None:intergenic
AACTTGGTGCTAAGGCGTTG+CGG 0.593967 4_4:+49608463 Msa0685470:CDS
TAAAGAGACATCCAAATCAA+GGG 0.597215 4_4:+49608521 Msa0685470:CDS
ACAAGGAAATATCAATGGAG+TGG 0.598845 4_4:+49608323 Msa0685470:CDS
AACACAGACATAAAAGTTGG+TGG 0.601218 4_4:+49607712 Msa0685470:CDS
GCGTTGCGGAAAAGCTGGGA+AGG 0.605950 4_4:+49608477 Msa0685470:CDS
CTCACCATTCTAAAAGCACA+AGG 0.606009 4_4:-49607201 None:intergenic
ATTAACTTTAGTAGCACCCC+AGG 0.608080 4_4:-49607679 None:intergenic
TAAGGCGTTGCGGAAAAGCT+GGG 0.622391 4_4:+49608473 Msa0685470:CDS
GATAGGCTGATTGCTAAGGT+GGG 0.622398 4_4:+49608345 Msa0685470:CDS
CCCAGTTGAACAATGGACAA+TGG 0.628698 4_4:-49607537 None:intergenic
ACTCTTCTAATACTCAAATG+GGG 0.638325 4_4:-49607609 None:intergenic
CGTTGCGGAAAAGCTGGGAA+GGG 0.647668 4_4:+49608478 Msa0685470:CDS
AGTGGATAGGCTGATTGCTA+AGG 0.655516 4_4:+49608341 Msa0685470:CDS
TCTAATGGAGTTAAGCAACA+AGG 0.656865 4_4:+49608306 Msa0685470:CDS
CCTTCCTCCTAGCAGTGAGG+AGG 0.657731 4_4:-49610470 None:intergenic
AATGGCAAATCTAGTTCCTG+GGG 0.665627 4_4:+49607663 Msa0685470:exon
ACTTCCTCCTCACTGCTAGG+AGG 0.666318 4_4:+49610466 Msa0685470:CDS
TTAGATCATCATGTTCATCA+GGG 0.666720 4_4:-49607861 None:intergenic
CATCCTTCCTCCTAGCAGTG+AGG 0.669946 4_4:-49610473 None:intergenic
ATTGTTCCAGCACTAGCAGG+TGG 0.697945 4_4:+49607769 Msa0685470:CDS
ACTGCAATTCTCTTCCCGAG+AGG 0.722826 4_4:-49608405 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATATTTTTTTTTATT+TGG + chr4_4:49610342-49610361 Msa0685470:intron 0.0%
!!! AATTTTTTTTACTCAATTTT+AGG + chr4_4:49609468-49609487 Msa0685470:intron 10.0%
!!! ATTTTTTTTACTCAATTTTA+GGG + chr4_4:49609469-49609488 Msa0685470:intron 10.0%
!!! TATTTTTTTTTATTTGGATT+TGG + chr4_4:49610348-49610367 Msa0685470:intron 10.0%
!! CTAATTGATTATATAAATAA+GGG - chr4_4:49611282-49611301 None:intergenic 10.0%
!! TCTAATTGATTATATAAATA+AGG - chr4_4:49611283-49611302 None:intergenic 10.0%
!! AAGAAAAGAAAAAGTAAATT+TGG - chr4_4:49607366-49607385 None:intergenic 15.0%
!!! TTATTTCTTTAATTCAGATT+TGG + chr4_4:49607471-49607490 Msa0685470:five_prime_UTR 15.0%
!! TAAAATAAGTAAATACAAAC+AGG - chr4_4:49608610-49608629 None:intergenic 15.0%
!! ATTGAGTAAAAAAAATTCAT+AGG - chr4_4:49609465-49609484 None:intergenic 15.0%
!!! GTGTAATAATTCTTTAAAAA+TGG + chr4_4:49610773-49610792 Msa0685470:intron 15.0%
!! TCTATAAAGTAAATAATAAG+AGG + chr4_4:49610798-49610817 Msa0685470:intron 15.0%
!!! AATGAAGAGATTTTATACTA+TGG - chr4_4:49607275-49607294 None:intergenic 20.0%
!!! AATTTTGATCTATACAATTG+TGG + chr4_4:49607427-49607446 Msa0685470:five_prime_UTR 20.0%
!! AGTAAGTTTATTCACAATTT+AGG + chr4_4:49608584-49608603 Msa0685470:intron 20.0%
!!! TTTTCATACATTTTTCCTTT+TGG - chr4_4:49609036-49609055 None:intergenic 20.0%
!!! TCAAATTTGTCTATCTTTTA+AGG - chr4_4:49609063-49609082 None:intergenic 20.0%
!!! TCAATTCACAATTTTTTTGT+AGG + chr4_4:49609355-49609374 Msa0685470:intron 20.0%
!!! ACAATTTTTTTGTAGGAAAT+TGG + chr4_4:49609362-49609381 Msa0685470:intron 20.0%
!! AAAACATTGAAAATCAAGAT+AGG - chr4_4:49609405-49609424 None:intergenic 20.0%
!! ATTATACATTGATCTGAATT+AGG + chr4_4:49609530-49609549 Msa0685470:intron 20.0%
!! TTATACATTGATCTGAATTA+GGG + chr4_4:49609531-49609550 Msa0685470:intron 20.0%
!! AACAAAAAGGAACAAAAATT+TGG + chr4_4:49609696-49609715 Msa0685470:intron 20.0%
!!! TTTAGCCTTTTGATTATTTA+CGG - chr4_4:49609742-49609761 None:intergenic 20.0%
!! AAAAGGCTAAATTAATTCAA+TGG + chr4_4:49609751-49609770 Msa0685470:intron 20.0%
!!! TTGATGATTTTAAGACTTAT+GGG - chr4_4:49609809-49609828 None:intergenic 20.0%
!!! ATTGATGATTTTAAGACTTA+TGG - chr4_4:49609810-49609829 None:intergenic 20.0%
!! AAGTCTTAAAATCATCAATT+TGG + chr4_4:49609811-49609830 Msa0685470:intron 20.0%
!!! ATCAAATATAATTTAGCTTC+AGG - chr4_4:49609920-49609939 None:intergenic 20.0%
!! TGAAGCTAAATTATATTTGA+TGG + chr4_4:49609919-49609938 Msa0685470:intron 20.0%
!!! TTTTTATTTGGATTTGGATT+TGG + chr4_4:49610354-49610373 Msa0685470:intron 20.0%
!! ACATTTCAATAAACACAAAA+AGG - chr4_4:49610419-49610438 None:intergenic 20.0%
!! AAAGAATTATTACACCTTTA+AGG - chr4_4:49610768-49610787 None:intergenic 20.0%
!! TGAGATTTATGAATAAGAAA+TGG - chr4_4:49610871-49610890 None:intergenic 20.0%
!! TCAGATTTATGAATATGAAA+TGG - chr4_4:49610966-49610985 None:intergenic 20.0%
!!! TGTTATTTTTCTCTTATTCT+AGG + chr4_4:49610994-49611013 Msa0685470:intron 20.0%
!! ACTACAAGACAAAAATATAT+TGG - chr4_4:49611183-49611202 None:intergenic 20.0%
!! AAACATATTCAAAAAACAAC+CGG - chr4_4:49611331-49611350 None:intergenic 20.0%
!! ACTATGGTTTTTGTATTAGT+GGG - chr4_4:49607259-49607278 None:intergenic 25.0%
!! TACTATGGTTTTTGTATTAG+TGG - chr4_4:49607260-49607279 None:intergenic 25.0%
! TACTCTTCTAATACTCAAAT+GGG - chr4_4:49607613-49607632 None:intergenic 25.0%
! TTACTCTTCTAATACTCAAA+TGG - chr4_4:49607614-49607633 None:intergenic 25.0%
!! AAATCAAGGCTTTTATGTTA+AGG + chr4_4:49607804-49607823 Msa0685470:CDS 25.0%
! ACAAGTAGATAAGAAATCAA+TGG + chr4_4:49608128-49608147 Msa0685470:CDS 25.0%
!! GATAAGAAATCAATGGTTTT+AGG + chr4_4:49608135-49608154 Msa0685470:CDS 25.0%
!!! TCTTTTGAGAAATTCTCTAA+TGG + chr4_4:49608291-49608310 Msa0685470:CDS 25.0%
!! TCAATCAGAAATTTAGTTCA+AGG + chr4_4:49608435-49608454 Msa0685470:CDS 25.0%
! TATAAGAAGTGATTATGCAT+AGG - chr4_4:49608779-49608798 None:intergenic 25.0%
!! TTTTAACAAGATTCACTTTC+TGG + chr4_4:49609006-49609025 Msa0685470:intron 25.0%
!! TACCGTCTTTTCATAATATA+GGG + chr4_4:49609183-49609202 Msa0685470:intron 25.0%
! AACCCTATATTATGAAAAGA+CGG - chr4_4:49609188-49609207 None:intergenic 25.0%
! AACAAGTGAAATTGAATCAA+TGG + chr4_4:49609499-49609518 Msa0685470:intron 25.0%
!!! TGGTTTTTGATTTTCAAACT+TGG + chr4_4:49609560-49609579 Msa0685470:intron 25.0%
!!! AAAAATTTGGTGTCGTATAT+AGG + chr4_4:49609709-49609728 Msa0685470:intron 25.0%
! TTATATCCTTGCATCATAAT+TGG - chr4_4:49609995-49610014 None:intergenic 25.0%
! TATGATGCAAGGATATAAAA+AGG + chr4_4:49609997-49610016 Msa0685470:intron 25.0%
!!! TTAATCTCATTGATTTGCTT+AGG - chr4_4:49610444-49610463 None:intergenic 25.0%
! TAAGCAAATCAATGAGATTA+AGG + chr4_4:49610443-49610462 Msa0685470:CDS 25.0%
! TAATTCTCAAAAACTAACCT+GGG - chr4_4:49610623-49610642 None:intergenic 25.0%
! ATAATTCTCAAAAACTAACC+TGG - chr4_4:49610624-49610643 None:intergenic 25.0%
!!! TAGTTTTTGAGAATTATCGT+TGG + chr4_4:49610627-49610646 Msa0685470:intron 25.0%
! CAACAGAAATAAACAATCTA+TGG - chr4_4:49610728-49610747 None:intergenic 25.0%
!!! CATAGATTGTTTATTTCTGT+TGG + chr4_4:49610726-49610745 Msa0685470:intron 25.0%
!!! TTATTTCTGTTGGTTGTTAT+AGG + chr4_4:49610736-49610755 Msa0685470:intron 25.0%
! ATAATAAGAGGATTGTGTAA+TGG + chr4_4:49610810-49610829 Msa0685470:intron 25.0%
! TCTTATTCATAAATCTCAAC+TGG + chr4_4:49610873-49610892 Msa0685470:intron 25.0%
! CTTATTCATAAATCTCAACT+GGG + chr4_4:49610874-49610893 Msa0685470:intron 25.0%
! TTATGAATATGAAATGGAAG+AGG - chr4_4:49610960-49610979 None:intergenic 25.0%
!! AGATGTAGAAATTTGAGTTT+AGG + chr4_4:49611040-49611059 Msa0685470:intron 25.0%
! AGACTTCAATATAAGATAAG+AGG - chr4_4:49611306-49611325 None:intergenic 25.0%
! ATCTTATATTGAAGTCTTTC+CGG + chr4_4:49611309-49611328 Msa0685470:three_prime_UTR 25.0%
!! TCAATCAGTAGAAAGTTTTT+AGG + chr4_4:49611399-49611418 Msa0685470:three_prime_UTR 25.0%
AAGGTAGACTATGATAATCA+TGG - chr4_4:49607185-49607204 None:intergenic 30.0%
AACTAGAAACTAGAAACTGA+TGG - chr4_4:49607501-49607520 None:intergenic 30.0%
ACTCTTCTAATACTCAAATG+GGG - chr4_4:49607612-49607631 None:intergenic 30.0%
!!! TTTGCCATTTTTTGTTGCTT+TGG - chr4_4:49607652-49607671 None:intergenic 30.0%
ATGAACACAGACATAAAAGT+TGG + chr4_4:49607709-49607728 Msa0685470:CDS 30.0%
! GGAGATTTGTTTACAAATCA+AGG + chr4_4:49607790-49607809 Msa0685470:CDS 30.0%
TTAGATCATCATGTTCATCA+GGG - chr4_4:49607864-49607883 None:intergenic 30.0%
ATTAGATCATCATGTTCATC+AGG - chr4_4:49607865-49607884 None:intergenic 30.0%
TTAGTTGCAACAATATCTTC+AGG - chr4_4:49608009-49608028 None:intergenic 30.0%
!!! TGTTGTTGATTTTGTGAAGA+AGG + chr4_4:49608188-49608207 Msa0685470:CDS 30.0%
GAGAATTTCTCAAAAGAAGT+AGG - chr4_4:49608288-49608307 None:intergenic 30.0%
AAGCAACAAGGAAATATCAA+TGG + chr4_4:49608318-49608337 Msa0685470:CDS 30.0%
TTAGTTCAAGGAATTGAACT+TGG + chr4_4:49608447-49608466 Msa0685470:CDS 30.0%
ATAAAGAGACATCCAAATCA+AGG + chr4_4:49608520-49608539 Msa0685470:CDS 30.0%
TAAAGAGACATCCAAATCAA+GGG + chr4_4:49608521-49608540 Msa0685470:CDS 30.0%
!! CTTATTTCTATAAGCACTCT+AGG + chr4_4:49608715-49608734 Msa0685470:intron 30.0%
! ATTATGCATAGGCTATTTCA+TGG - chr4_4:49608768-49608787 None:intergenic 30.0%
CTTAATTGATACGTTTATCC+AGG + chr4_4:49608841-49608860 Msa0685470:intron 30.0%
TCAAAGTTGTTCAAAAAGAC+AGG - chr4_4:49608867-49608886 None:intergenic 30.0%
AAACAAAGAAAAGTCCAACA+AGG - chr4_4:49608905-49608924 None:intergenic 30.0%
TTTGATGCATTAGCAAACAA+TGG + chr4_4:49609078-49609097 Msa0685470:intron 30.0%
TTGATGCATTAGCAAACAAT+GGG + chr4_4:49609079-49609098 Msa0685470:intron 30.0%
AGTTACACAAACTAAACTCT+TGG + chr4_4:49609111-49609130 Msa0685470:intron 30.0%
AAACTAAACTCTTGGTAAAC+CGG + chr4_4:49609119-49609138 Msa0685470:intron 30.0%
! GTACCGTCTTTTCATAATAT+AGG + chr4_4:49609182-49609201 Msa0685470:intron 30.0%
! TCGAAGGTTTGAGAATTTTA+GGG - chr4_4:49609227-49609246 None:intergenic 30.0%
GATCTGAATTAGGGAATTTA+TGG + chr4_4:49609540-49609559 Msa0685470:intron 30.0%
!! ATTTTCAAACTTGGTAGTCA+GGG + chr4_4:49609569-49609588 Msa0685470:intron 30.0%
ATCCAGAATTTAGATACATG+TGG + chr4_4:49609596-49609615 Msa0685470:intron 30.0%
GAACACCGTAAATAATCAAA+AGG + chr4_4:49609734-49609753 Msa0685470:intron 30.0%
GAAAACTGGAAATTAGTTGA+GGG - chr4_4:49609778-49609797 None:intergenic 30.0%
TGAAAACTGGAAATTAGTTG+AGG - chr4_4:49609779-49609798 None:intergenic 30.0%
TATGGGACTAAAATGAAAAC+TGG - chr4_4:49609792-49609811 None:intergenic 30.0%
! TTTTGCTCCGTTATTCAATT+TGG + chr4_4:49609843-49609862 Msa0685470:intron 30.0%
TAAAACAAAAGCTTAACAGC+TGG + chr4_4:49610033-49610052 Msa0685470:intron 30.0%
!!! TGCATGGTTTTAGTTTCTAA+AGG - chr4_4:49610060-49610079 None:intergenic 30.0%
AATTCTCAAAAACTAACCTG+GGG - chr4_4:49610622-49610641 None:intergenic 30.0%
! TTATCGTTGGTTGTATGTTA+TGG + chr4_4:49610640-49610659 Msa0685470:intron 30.0%
TGTAATGGCCAAATAGATAT+GGG + chr4_4:49610825-49610844 Msa0685470:intron 30.0%
ATATTCTCCCCATATCTATT+TGG - chr4_4:49610836-49610855 None:intergenic 30.0%
TTATGAATAAGAAATGGCAG+AGG - chr4_4:49610865-49610884 None:intergenic 30.0%
TTGGGAACAACTTATGATAT+GGG + chr4_4:49610920-49610939 Msa0685470:intron 30.0%
TCATATTCATAAATCTGAGC+TGG + chr4_4:49610968-49610987 Msa0685470:intron 30.0%
AGTGAAACGTAAATGTAAGT+AGG - chr4_4:49611070-49611089 None:intergenic 30.0%
TACTGACAAGAAAATAGAGT+TGG - chr4_4:49611248-49611267 None:intergenic 30.0%
!! TTTTTGAGCTAAGTCAATAG+AGG + chr4_4:49611348-49611367 Msa0685470:three_prime_UTR 30.0%
CTAAGTCAATAGAGGTTAAT+TGG + chr4_4:49611356-49611375 Msa0685470:three_prime_UTR 30.0%
!! TCTACCTTGTGCTTTTAGAA+TGG + chr4_4:49607197-49607216 Msa0685470:five_prime_UTR 35.0%
! ATGGTTTTTGTATTAGTGGG+TGG - chr4_4:49607256-49607275 None:intergenic 35.0%
!!! CCATTTTTTGTTGCTTTGGT+AGG - chr4_4:49607648-49607667 None:intergenic 35.0%
CCTACCAAAGCAACAAAAAA+TGG + chr4_4:49607645-49607664 Msa0685470:exon 35.0%
! AAAATGGCAAATCTAGTTCC+TGG + chr4_4:49607661-49607680 Msa0685470:exon 35.0%
! AAATGGCAAATCTAGTTCCT+GGG + chr4_4:49607662-49607681 Msa0685470:exon 35.0%
AACACAGACATAAAAGTTGG+TGG + chr4_4:49607712-49607731 Msa0685470:CDS 35.0%
CTAACTGAATCTTGTCACTA+AGG - chr4_4:49607888-49607907 None:intergenic 35.0%
CTTAGTGACAAGATTCAGTT+AGG + chr4_4:49607886-49607905 Msa0685470:CDS 35.0%
!!! GCCAGTTTGTTTTTGTTGAT+CGG + chr4_4:49607908-49607927 Msa0685470:CDS 35.0%
ACCGATCAACAAAAACAAAC+TGG - chr4_4:49607912-49607931 None:intergenic 35.0%
ATTGTTGCAACTAACTCACT+TGG + chr4_4:49608015-49608034 Msa0685470:CDS 35.0%
! TTTTCTTAGCAATGCTTCTG+AGG + chr4_4:49608038-49608057 Msa0685470:CDS 35.0%
TGATTCTCCAACACTTTCAT+TGG - chr4_4:49608102-49608121 None:intergenic 35.0%
TCTAATGGAGTTAAGCAACA+AGG + chr4_4:49608306-49608325 Msa0685470:CDS 35.0%
ACAAGGAAATATCAATGGAG+TGG + chr4_4:49608323-49608342 Msa0685470:CDS 35.0%
GAAATATCAATGGAGTGGAT+AGG + chr4_4:49608328-49608347 Msa0685470:CDS 35.0%
TGATGCATTAGCAAACAATG+GGG + chr4_4:49609080-49609099 Msa0685470:intron 35.0%
! CTCGAAGGTTTGAGAATTTT+AGG - chr4_4:49609228-49609247 None:intergenic 35.0%
TCCTCCCCAAATATTACAAT+CGG - chr4_4:49609255-49609274 None:intergenic 35.0%
GAAACACTGCAAAGAATCAA+TGG - chr4_4:49609323-49609342 None:intergenic 35.0%
!! GATTTTCAAACTTGGTAGTC+AGG + chr4_4:49609568-49609587 Msa0685470:intron 35.0%
!! TTTTCAAACTTGGTAGTCAG+GGG + chr4_4:49609570-49609589 Msa0685470:intron 35.0%
CTCCACATGTATCTAAATTC+TGG - chr4_4:49609601-49609620 None:intergenic 35.0%
!! AATTTGGTGTCGTATATAGG+CGG + chr4_4:49609712-49609731 Msa0685470:intron 35.0%
! AATAACGGAGCAAAAGTTGA+GGG - chr4_4:49609838-49609857 None:intergenic 35.0%
! ATTTAGCTTCAGGTCTAGTT+GGG - chr4_4:49609910-49609929 None:intergenic 35.0%
! AATTTAGCTTCAGGTCTAGT+TGG - chr4_4:49609911-49609930 None:intergenic 35.0%
TCCTTGCATCATAATTGGTT+GGG - chr4_4:49609990-49610009 None:intergenic 35.0%
ATCCTTGCATCATAATTGGT+TGG - chr4_4:49609991-49610010 None:intergenic 35.0%
! ATGCATGGTTAAGCTTTTGT+GGG - chr4_4:49610085-49610104 None:intergenic 35.0%
CTGTTGCTACACTAATATGT+GGG - chr4_4:49610199-49610218 None:intergenic 35.0%
! TTTTCCCCATAATGATGGTT+CGG - chr4_4:49610235-49610254 None:intergenic 35.0%
CTGTGTTGTGATTTGAAAGA+TGG + chr4_4:49610381-49610400 Msa0685470:intron 35.0%
TTTGCTTCTCTTGATCTTCA+CGG - chr4_4:49610505-49610524 None:intergenic 35.0%
CAAAGATGTTGTCAAGTTCA+AGG + chr4_4:49610521-49610540 Msa0685470:CDS 35.0%
ACAAAGTGTGTACAAGTACT+TGG - chr4_4:49610556-49610575 None:intergenic 35.0%
ATTCTCAAAAACTAACCTGG+GGG - chr4_4:49610621-49610640 None:intergenic 35.0%
! TTCTGTTGGTTGTTATAGGT+CGG + chr4_4:49610740-49610759 Msa0685470:intron 35.0%
GTGTAATGGCCAAATAGATA+TGG + chr4_4:49610824-49610843 Msa0685470:intron 35.0%
GTAATGGCCAAATAGATATG+GGG + chr4_4:49610826-49610845 Msa0685470:intron 35.0%
!!! TGCTATTTTTCTCTCTCAGT+TGG + chr4_4:49610901-49610920 Msa0685470:intron 35.0%
!!! GCTATTTTTCTCTCTCAGTT+GGG + chr4_4:49610902-49610921 Msa0685470:intron 35.0%
GTTGGGAACAACTTATGATA+TGG + chr4_4:49610919-49610938 Msa0685470:intron 35.0%
TGGGAACAACTTATGATATG+GGG + chr4_4:49610921-49610940 Msa0685470:intron 35.0%
!! CATTTACGTTTCACTTTTGC+AGG + chr4_4:49611075-49611094 Msa0685470:intron 35.0%
GCAAGACTTGTAATTCTATC+CGG + chr4_4:49611107-49611126 Msa0685470:exon 35.0%
TCACTCAGTACACATTTAAC+CGG - chr4_4:49611129-49611148 None:intergenic 35.0%
CTTACGACTCTCATTATGAA+TGG + chr4_4:49611221-49611240 Msa0685470:three_prime_UTR 35.0%
GTCAATAGAGGTTAATTGGA+TGG + chr4_4:49611360-49611379 Msa0685470:three_prime_UTR 35.0%
! CTCACCATTCTAAAAGCACA+AGG - chr4_4:49607204-49607223 None:intergenic 40.0%
TCCATTGTCCATTGTTCAAC+TGG + chr4_4:49607536-49607555 Msa0685470:five_prime_UTR 40.0%
CCATTGTCCATTGTTCAACT+GGG + chr4_4:49607537-49607556 Msa0685470:five_prime_UTR 40.0%
TTCACAACCCAGTTGAACAA+TGG - chr4_4:49607547-49607566 None:intergenic 40.0%
! AATGGCAAATCTAGTTCCTG+GGG + chr4_4:49607663-49607682 Msa0685470:exon 40.0%
ATTAACTTTAGTAGCACCCC+AGG - chr4_4:49607682-49607701 None:intergenic 40.0%
!! TAGCAATGCTTCTGAGGTTA+AGG + chr4_4:49608044-49608063 Msa0685470:CDS 40.0%
!! CTTCTGAGGTTAAGGTTAAG+AGG + chr4_4:49608052-49608071 Msa0685470:CDS 40.0%
TAGCAACTAGTAGGTGAAGA+AGG - chr4_4:49608258-49608277 None:intergenic 40.0%
GGCAAAGAATAGCAACTAGT+AGG - chr4_4:49608267-49608286 None:intergenic 40.0%
!! AGGAATTGAACTTGGTGCTA+AGG + chr4_4:49608455-49608474 Msa0685470:CDS 40.0%
CTTAGAAGATGCCCTTGATT+TGG - chr4_4:49608535-49608554 None:intergenic 40.0%
CTTACTGTGCTACGAAATTC+AGG - chr4_4:49608570-49608589 None:intergenic 40.0%
TAAGCACTTGTGAGACAGTT+TGG + chr4_4:49608645-49608664 Msa0685470:intron 40.0%
AGACAGTTTGGTAGAGCTTA+TGG + chr4_4:49608657-49608676 Msa0685470:intron 40.0%
AAGAAAAGTCCAACAAGGTC+TGG - chr4_4:49608900-49608919 None:intergenic 40.0%
! TCACTTTCTGGTGTTCCAAA+AGG + chr4_4:49609018-49609037 Msa0685470:intron 40.0%
GATGCATTAGCAAACAATGG+GGG + chr4_4:49609081-49609100 Msa0685470:intron 40.0%
! TTTTTCCTTCCGTATTGAGC+CGG - chr4_4:49609141-49609160 None:intergenic 40.0%
!! AGCGTGCCGATTGTAATATT+TGG + chr4_4:49609246-49609265 Msa0685470:intron 40.0%
!! GCGTGCCGATTGTAATATTT+GGG + chr4_4:49609247-49609266 Msa0685470:intron 40.0%
!! CGTGCCGATTGTAATATTTG+GGG + chr4_4:49609248-49609267 Msa0685470:intron 40.0%
TGTAATATTTGGGGAGGAAG+AGG + chr4_4:49609257-49609276 Msa0685470:intron 40.0%
ATCGCAGCGAAGACAAAAAA+TGG + chr4_4:49609282-49609301 Msa0685470:intron 40.0%
TACTAAAACCTTACCACTCG+CGG + chr4_4:49609669-49609688 Msa0685470:intron 40.0%
!!! CTTTTTGTTTTATCCGCGAG+TGG - chr4_4:49609685-49609704 None:intergenic 40.0%
CACTCGCGGATAAAACAAAA+AGG + chr4_4:49609683-49609702 Msa0685470:intron 40.0%
! GAATAACGGAGCAAAAGTTG+AGG - chr4_4:49609839-49609858 None:intergenic 40.0%
TCCGTTATTCAATTTGGTCC+CGG + chr4_4:49609849-49609868 Msa0685470:intron 40.0%
TCCGGGACCAAATTGAATAA+CGG - chr4_4:49609853-49609872 None:intergenic 40.0%
!!! GTTTGGAATTTTGCTGTTCC+GGG - chr4_4:49609870-49609889 None:intergenic 40.0%
!!! GGTTTGGAATTTTGCTGTTC+CGG - chr4_4:49609871-49609890 None:intergenic 40.0%
AGCAGCAACCAAAAAAGCTT+TGG + chr4_4:49609951-49609970 Msa0685470:intron 40.0%
!!! GTGTACTGCCAAAGCTTTTT+TGG - chr4_4:49609962-49609981 None:intergenic 40.0%
ACCCAACCAATTATGATGCA+AGG + chr4_4:49609986-49610005 Msa0685470:intron 40.0%
! TAAGCTTTTGTGGGTATGCA+TGG - chr4_4:49610076-49610095 None:intergenic 40.0%
! CATGCATGGTTAAGCTTTTG+TGG - chr4_4:49610086-49610105 None:intergenic 40.0%
!!! GGTGTTTTTAGGAATTGCGT+TGG - chr4_4:49610124-49610143 None:intergenic 40.0%
ATCAGCTCTGCTAAAAAACC+AGG + chr4_4:49610169-49610188 Msa0685470:intron 40.0%
GCTGTTGCTACACTAATATG+TGG - chr4_4:49610200-49610219 None:intergenic 40.0%
! ACAGTACCGAACCATCATTA+TGG + chr4_4:49610226-49610245 Msa0685470:intron 40.0%
! CAGTACCGAACCATCATTAT+GGG + chr4_4:49610227-49610246 Msa0685470:intron 40.0%
! AGTACCGAACCATCATTATG+GGG + chr4_4:49610228-49610247 Msa0685470:intron 40.0%
! CATGCTTTTCCCCATAATGA+TGG - chr4_4:49610240-49610259 None:intergenic 40.0%
! TCATTATGGGGAAAAGCATG+TGG + chr4_4:49610240-49610259 Msa0685470:intron 40.0%
CCTTTATCAACTACCAACAG+GGG - chr4_4:49610300-49610319 None:intergenic 40.0%
CCCTTTATCAACTACCAACA+GGG - chr4_4:49610301-49610320 None:intergenic 40.0%
!! CCCTGTTGGTAGTTGATAAA+GGG + chr4_4:49610298-49610317 Msa0685470:intron 40.0%
TCCCTTTATCAACTACCAAC+AGG - chr4_4:49610302-49610321 None:intergenic 40.0%
GTGCAAGTACTTTCAACTCT+AGG + chr4_4:49610685-49610704 Msa0685470:intron 40.0%
AGTACTTTCAACTCTAGGTG+AGG + chr4_4:49610690-49610709 Msa0685470:intron 40.0%
GTTATAGGTCGGAACCTTAA+AGG + chr4_4:49610751-49610770 Msa0685470:intron 40.0%
!! GTGAAGATCAAGTGTTGCTT+TGG + chr4_4:49611145-49611164 Msa0685470:three_prime_UTR 40.0%
TCATAATGAGAGTCGTAAGC+TGG - chr4_4:49611220-49611239 None:intergenic 40.0%
CCCAGTTGAACAATGGACAA+TGG - chr4_4:49607540-49607559 None:intergenic 45.0%
TTCCGATTCTTCGTGGTGTT+AGG + chr4_4:49607950-49607969 Msa0685470:CDS 45.0%
CACTTTCATTGGAGAGGACT+TGG - chr4_4:49608091-49608110 None:intergenic 45.0%
! GTCCTCTCCAATGAAAGTGT+TGG + chr4_4:49608092-49608111 Msa0685470:CDS 45.0%
CTCCAACACTTTCATTGGAG+AGG - chr4_4:49608097-49608116 None:intergenic 45.0%
AGTGGATAGGCTGATTGCTA+AGG + chr4_4:49608341-49608360 Msa0685470:CDS 45.0%
GATAGGCTGATTGCTAAGGT+GGG + chr4_4:49608345-49608364 Msa0685470:CDS 45.0%
ATAGGCTGATTGCTAAGGTG+GGG + chr4_4:49608346-49608365 Msa0685470:CDS 45.0%
GTTGTTCAAAAAGACAGGCC+TGG - chr4_4:49608862-49608881 None:intergenic 45.0%
TGTCAAACACCAGACCTTGT+TGG + chr4_4:49608888-49608907 Msa0685470:intron 45.0%
! CTTGGTAAACCGGCTCAATA+CGG + chr4_4:49609129-49609148 Msa0685470:intron 45.0%
TACTATCCTTATCCCAACGC+GGG - chr4_4:49609165-49609184 None:intergenic 45.0%
GTACTATCCTTATCCCAACG+CGG - chr4_4:49609166-49609185 None:intergenic 45.0%
GCCGATTGTAATATTTGGGG+AGG + chr4_4:49609251-49609270 Msa0685470:intron 45.0%
! TGTTTTATCCGCGAGTGGTA+AGG - chr4_4:49609680-49609699 None:intergenic 45.0%
!!! AGAGGTGGGTTGTTTTGGTT+TGG - chr4_4:49609887-49609906 None:intergenic 45.0%
! GCATTTTTGTGAGGCATGCA+TGG - chr4_4:49610100-49610119 None:intergenic 45.0%
!! TGCGTTGGTGCATTTTTGTG+AGG - chr4_4:49610109-49610128 None:intergenic 45.0%
!! GCAGCTCTGTTGGTGTTTTT+AGG - chr4_4:49610135-49610154 None:intergenic 45.0%
GAGCTGATATGTTGTGTGTG+TGG - chr4_4:49610157-49610176 None:intergenic 45.0%
CACTAATATGTGGGAGTTCC+TGG - chr4_4:49610190-49610209 None:intergenic 45.0%
!! GATGGTTCGGTACTGTTACA+AGG - chr4_4:49610222-49610241 None:intergenic 45.0%
GATGTATGTGGGAGCTATGT+GGG - chr4_4:49610275-49610294 None:intergenic 45.0%
TTATCAACTACCAACAGGGG+CGG - chr4_4:49610297-49610316 None:intergenic 45.0%
!! CCCCTGTTGGTAGTTGATAA+AGG + chr4_4:49610297-49610316 Msa0685470:intron 45.0%
AGCATTGTTCCAGCACTAGC+AGG + chr4_4:49607766-49607785 Msa0685470:CDS 50.0%
ATTGTTCCAGCACTAGCAGG+TGG + chr4_4:49607769-49607788 Msa0685470:CDS 50.0%
AAATCTCCACCTGCTAGTGC+TGG - chr4_4:49607778-49607797 None:intergenic 50.0%
ACACCACGAAGAATCGGAAC+AGG - chr4_4:49607949-49607968 None:intergenic 50.0%
GGCCTAACACCACGAAGAAT+CGG - chr4_4:49607955-49607974 None:intergenic 50.0%
GGATAGGCTGATTGCTAAGG+TGG + chr4_4:49608344-49608363 Msa0685470:CDS 50.0%
TAGGCTGATTGCTAAGGTGG+GGG + chr4_4:49608347-49608366 Msa0685470:CDS 50.0%
ACTGCAATTCTCTTCCCGAG+AGG - chr4_4:49608408-49608427 None:intergenic 50.0%
CTCGGGAAGAGAATTGCAGT+TGG + chr4_4:49608408-49608427 Msa0685470:CDS 50.0%
!! AACTTGGTGCTAAGGCGTTG+CGG + chr4_4:49608463-49608482 Msa0685470:CDS 50.0%
!! TAAGGCGTTGCGGAAAAGCT+GGG + chr4_4:49608473-49608492 Msa0685470:CDS 50.0%
GAAAAGCTGGGAAGGGAACA+TGG + chr4_4:49608485-49608504 Msa0685470:CDS 50.0%
! GTAAACCGGCTCAATACGGA+AGG + chr4_4:49609133-49609152 Msa0685470:intron 50.0%
AAAAAGCCCGCGTTGGGATA+AGG + chr4_4:49609156-49609175 Msa0685470:intron 50.0%
ATTACAATCGGCACGCTCGA+AGG - chr4_4:49609243-49609262 None:intergenic 50.0%
! TCAAACTTGGTAGTCAGGGG+CGG + chr4_4:49609573-49609592 Msa0685470:intron 50.0%
!!! TTGGGAGAGGTGGGTTGTTT+TGG - chr4_4:49609892-49609911 None:intergenic 50.0%
GGATGTATGTGGGAGCTATG+TGG - chr4_4:49610276-49610295 None:intergenic 50.0%
TTGAAGCAATCACTTCCCCC+AGG + chr4_4:49610603-49610622 Msa0685470:CDS 50.0%
TCGCCTGTTCCGATTCTTCG+TGG + chr4_4:49607943-49607962 Msa0685470:CDS 55.0%
! GTGGTGTTAGGCCTGTTCCT+GGG + chr4_4:49607962-49607981 Msa0685470:CDS 55.0%
CAAGCATGTCTCCCAGGAAC+AGG - chr4_4:49607976-49607995 None:intergenic 55.0%
CCAACACAAGCATGTCTCCC+AGG - chr4_4:49607982-49608001 None:intergenic 55.0%
CCTGGGAGACATGCTTGTGT+TGG + chr4_4:49607979-49607998 Msa0685470:CDS 55.0%
GTTCGCGGAGTTAGTCCTCT+CGG + chr4_4:49608390-49608409 Msa0685470:CDS 55.0%
TTCGCGGAGTTAGTCCTCTC+GGG + chr4_4:49608391-49608410 Msa0685470:CDS 55.0%
!! CTAAGGCGTTGCGGAAAAGC+TGG + chr4_4:49608472-49608491 Msa0685470:CDS 55.0%
CGTTGCGGAAAAGCTGGGAA+GGG + chr4_4:49608478-49608497 Msa0685470:CDS 55.0%
GGAAGGAAAAAGCCCGCGTT+GGG + chr4_4:49609150-49609169 Msa0685470:intron 55.0%
CAGGTCTAGTTGGGAGAGGT+GGG - chr4_4:49609901-49609920 None:intergenic 55.0%
TCAGGTCTAGTTGGGAGAGG+TGG - chr4_4:49609902-49609921 None:intergenic 55.0%
GCTTCAGGTCTAGTTGGGAG+AGG - chr4_4:49609905-49609924 None:intergenic 55.0%
TGTGTGTGTGGCAGCTCTGT+TGG - chr4_4:49610145-49610164 None:intergenic 55.0%
CAACAGGGGCGGATGTATGT+GGG - chr4_4:49610286-49610305 None:intergenic 55.0%
AGGACTTCCTCCTCACTGCT+AGG + chr4_4:49610463-49610482 Msa0685470:CDS 55.0%
ACTTCCTCCTCACTGCTAGG+AGG + chr4_4:49610466-49610485 Msa0685470:CDS 55.0%
CATCCTTCCTCCTAGCAGTG+AGG - chr4_4:49610476-49610495 None:intergenic 55.0%
! CGTGGTGTTAGGCCTGTTCC+TGG + chr4_4:49607961-49607980 Msa0685470:CDS 60.0%
GCTGATTGCTAAGGTGGGGG+TGG + chr4_4:49608350-49608369 Msa0685470:CDS 60.0%
GATTGCTAAGGTGGGGGTGG+TGG + chr4_4:49608353-49608372 Msa0685470:CDS 60.0%
!! TAAGGTGGGGGTGGTGGAGA+CGG + chr4_4:49608359-49608378 Msa0685470:CDS 60.0%
!! GAGACGGGAAAGGGTGTTCG+CGG + chr4_4:49608375-49608394 Msa0685470:CDS 60.0%
GCGTTGCGGAAAAGCTGGGA+AGG + chr4_4:49608477-49608496 Msa0685470:CDS 60.0%
CGGAAGGAAAAAGCCCGCGT+TGG + chr4_4:49609149-49609168 Msa0685470:intron 60.0%
CCAACAGGGGCGGATGTATG+TGG - chr4_4:49610287-49610306 None:intergenic 60.0%
CCACATACATCCGCCCCTGT+TGG + chr4_4:49610284-49610303 Msa0685470:intron 60.0%
CCTTCCTCCTAGCAGTGAGG+AGG - chr4_4:49610473-49610492 None:intergenic 60.0%
CCTCCTCACTGCTAGGAGGA+AGG + chr4_4:49610470-49610489 Msa0685470:CDS 60.0%
!! AAGGTGGGGGTGGTGGAGAC+GGG + chr4_4:49608360-49608379 Msa0685470:CDS 65.0%
!! GGGGTGGTGGAGACGGGAAA+GGG + chr4_4:49608366-49608385 Msa0685470:CDS 65.0%
!! GGGGGTGGTGGAGACGGGAA+AGG + chr4_4:49608365-49608384 Msa0685470:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 49607172 49611431 49607172 ID=Msa0685470;Name=Msa0685470
chr4_4 mRNA 49607172 49611431 49607172 ID=Msa0685470-mRNA-1;Parent=Msa0685470;Name=Msa0685470-mRNA-1;_AED=0.16;_eAED=0.16;_QI=492|1|1|1|1|1|3|312|375
chr4_4 exon 49607172 49608584 49607172 ID=Msa0685470-mRNA-1:exon:12521;Parent=Msa0685470-mRNA-1
chr4_4 exon 49610441 49610624 49610441 ID=Msa0685470-mRNA-1:exon:12522;Parent=Msa0685470-mRNA-1
chr4_4 exon 49611097 49611431 49611097 ID=Msa0685470-mRNA-1:exon:12523;Parent=Msa0685470-mRNA-1
chr4_4 five_prime_UTR 49607172 49607663 49607172 ID=Msa0685470-mRNA-1:five_prime_utr;Parent=Msa0685470-mRNA-1
chr4_4 CDS 49607664 49608584 49607664 ID=Msa0685470-mRNA-1:cds;Parent=Msa0685470-mRNA-1
chr4_4 CDS 49610441 49610624 49610441 ID=Msa0685470-mRNA-1:cds;Parent=Msa0685470-mRNA-1
chr4_4 CDS 49611097 49611119 49611097 ID=Msa0685470-mRNA-1:cds;Parent=Msa0685470-mRNA-1
chr4_4 three_prime_UTR 49611120 49611431 49611120 ID=Msa0685470-mRNA-1:three_prime_utr;Parent=Msa0685470-mRNA-1
Gene Sequence

>Msa0685470

ATGGCAAATCTAGTTCCTGGGGTGCTACTAAAGTTAATGCAGCACATGAACACAGACATAAAAGTTGGTGGTGAACATAGATCATCATTGTTACAAGTTGTGAGCATTGTTCCAGCACTAGCAGGTGGAGATTTGTTTACAAATCAAGGCTTTTATGTTAAGGTTTCTGATTCATCACATGCTACTTATGTCTCTCTCCCTGATGAACATGATGATCTAATCCTTAGTGACAAGATTCAGTTAGGCCAGTTTGTTTTTGTTGATCGGTTTGAAGCTGCTTCGCCTGTTCCGATTCTTCGTGGTGTTAGGCCTGTTCCTGGGAGACATGCTTGTGTTGGAACACCTGAAGATATTGTTGCAACTAACTCACTTGGTTTTCTTAGCAATGCTTCTGAGGTTAAGGTTAAGAGGAATAGTGTTTGTTCCAAGTCCTCTCCAATGAAAGTGTTGGAGAATCATCAAGAACAAGTAGATAAGAAATCAATGGTTTTAGGTAGATGTAAATCTCAGACAGCAAAAGATTCTGTTGTTGATTTTGTGAAGAAGGAAAAGTTAACAAGATTAAAGTCATTGAATTCAAGAGCTATTGTTCCTTCTTCACCTACTAGTTGCTATTCTTTGCCTACTTCTTTTGAGAAATTCTCTAATGGAGTTAAGCAACAAGGAAATATCAATGGAGTGGATAGGCTGATTGCTAAGGTGGGGGTGGTGGAGACGGGAAAGGGTGTTCGCGGAGTTAGTCCTCTCGGGAAGAGAATTGCAGTTGGAAATTCAATCAGAAATTTAGTTCAAGGAATTGAACTTGGTGCTAAGGCGTTGCGGAAAAGCTGGGAAGGGAACATGGAAGTTAAGAATAATAAAGAGACATCCAAATCAAGGGCATCTTCTAAGTGTGATTCTAAGCCTGAATTTCGTAGCACACCTAAGCAAATCAATGAGATTAAGGACTTCCTCCTCACTGCTAGGAGGAAGGATGCACGCTCCGTGAAGATCAAGAGAAGCAAAGATGTTGTCAAGTTCAAGGTTCGATGCTCCAAGTACTTGTACACACTTTGTGTGTTTGATACTGAGAAAGCTGATAAGTTGAAGCAATCACTTCCCCCAGGTTTGAATGTGCAAGACTTGTAA
Protein sequence

>Msa0685470

MANLVPGVLLKLMQHMNTDIKVGGEHRSSLLQVVSIVPALAGGDLFTNQGFYVKVSDSSHATYVSLPDEHDDLILSDKIQLGQFVFVDRFEAASPVPILRGVRPVPGRHACVGTPEDIVATNSLGFLSNASEVKVKRNSVCSKSSPMKVLENHQEQVDKKSMVLGRCKSQTAKDSVVDFVKKEKLTRLKSLNSRAIVPSSPTSCYSLPTSFEKFSNGVKQQGNINGVDRLIAKVGVVETGKGVRGVSPLGKRIAVGNSIRNLVQGIELGAKALRKSWEGNMEVKNNKETSKSRASSKCDSKPEFRSTPKQINEIKDFLLTARRKDARSVKIKRSKDVVKFKVRCSKYLYTLCVFDTEKADKLKQSLPPGLNVQDL*