Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381450 | XP_013461832.1 | 96.128 | 749 | 19 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381450 | sp|A0A1P8AWH8|XYN1_ARATH | 69.577 | 733 | 218 | 4 | 21 | 748 | 210 | 942 | 0.0 | 1093 |
| Msa0381450 | sp|A0A1P8AWH8|XYN1_ARATH | 28.779 | 344 | 213 | 8 | 31 | 361 | 51 | 375 | 1.63e-32 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381450 | A0A072V240 | 96.128 | 749 | 19 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1497 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140640 | Msa0381450 | 0.926478 | 4.435913e-91 | -8.615850e-47 |
| Msa0381450 | Msa0476050 | 0.989446 | 3.710141e-178 | -8.615850e-47 |
| Msa0381450 | Msa0519940 | 0.919519 | 4.068560e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381450 | MtrunA17_Chr3g0135341 | 96.128 | 749 | 19 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1497 |
| Msa0381450 | MtrunA17_Chr1g0151951 | 79.363 | 722 | 146 | 2 | 30 | 748 | 209 | 930 | 0.0 | 1227 |
| Msa0381450 | MtrunA17_Chr1g0151951 | 30.792 | 341 | 211 | 7 | 33 | 361 | 38 | 365 | 4.15e-34 | 140 |
| Msa0381450 | MtrunA17_Chr3g0145541 | 33.588 | 524 | 310 | 15 | 249 | 748 | 50 | 559 | 4.68e-77 | 258 |
| Msa0381450 | MtrunA17_Chr5g0421191 | 31.130 | 469 | 277 | 14 | 208 | 663 | 43 | 478 | 7.50e-64 | 223 |
| Msa0381450 | MtrunA17_Chr1g0207211 | 28.440 | 545 | 338 | 14 | 197 | 722 | 41 | 552 | 1.25e-62 | 220 |
| Msa0381450 | MtrunA17_Chr7g0223191 | 29.135 | 532 | 323 | 15 | 208 | 722 | 17 | 511 | 1.49e-61 | 216 |
| Msa0381450 | MtrunA17_Chr4g0037551 | 31.906 | 467 | 276 | 14 | 208 | 663 | 46 | 481 | 4.48e-61 | 215 |
| Msa0381450 | MtrunA17_Chr1g0207241 | 29.873 | 472 | 296 | 12 | 200 | 661 | 50 | 496 | 2.41e-60 | 214 |
| Msa0381450 | MtrunA17_Chr1g0207201 | 31.362 | 389 | 250 | 9 | 282 | 660 | 1 | 382 | 4.89e-56 | 199 |
| Msa0381450 | MtrunA17_Chr1g0207231 | 28.319 | 452 | 305 | 11 | 282 | 722 | 1 | 444 | 2.47e-54 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381450 | AT1G58370.1 | 69.577 | 733 | 218 | 4 | 21 | 748 | 182 | 914 | 0.0 | 1094 |
| Msa0381450 | AT1G58370.1 | 28.779 | 344 | 213 | 8 | 31 | 361 | 23 | 347 | 1.66e-33 | 139 |
| Msa0381450 | AT1G58370.2 | 69.577 | 733 | 218 | 4 | 21 | 748 | 210 | 942 | 0.0 | 1093 |
| Msa0381450 | AT1G58370.2 | 28.779 | 344 | 213 | 8 | 31 | 361 | 51 | 375 | 1.66e-33 | 139 |
| Msa0381450 | AT4G08160.1 | 66.310 | 748 | 239 | 6 | 14 | 748 | 2 | 749 | 0.0 | 1041 |
| Msa0381450 | AT1G10050.2 | 61.434 | 739 | 276 | 6 | 16 | 748 | 328 | 1063 | 0.0 | 957 |
| Msa0381450 | AT1G10050.2 | 25.294 | 340 | 225 | 7 | 35 | 361 | 3 | 326 | 3.71e-29 | 125 |
| Msa0381450 | AT1G10050.1 | 61.434 | 739 | 276 | 6 | 16 | 748 | 328 | 1063 | 0.0 | 957 |
| Msa0381450 | AT1G10050.1 | 25.294 | 340 | 225 | 7 | 35 | 361 | 3 | 326 | 3.71e-29 | 125 |
| Msa0381450 | AT1G10050.3 | 61.434 | 739 | 276 | 6 | 16 | 748 | 360 | 1095 | 0.0 | 957 |
| Msa0381450 | AT1G10050.3 | 25.294 | 340 | 225 | 7 | 35 | 361 | 35 | 358 | 4.19e-29 | 125 |
| Msa0381450 | AT4G08160.2 | 66.921 | 656 | 204 | 6 | 14 | 656 | 2 | 657 | 0.0 | 915 |
| Msa0381450 | AT4G38650.1 | 34.328 | 469 | 287 | 10 | 284 | 738 | 91 | 552 | 6.03e-74 | 250 |
| Msa0381450 | AT4G33830.1 | 29.679 | 529 | 326 | 14 | 208 | 722 | 47 | 543 | 2.67e-67 | 233 |
| Msa0381450 | AT4G33840.1 | 28.679 | 530 | 331 | 12 | 208 | 722 | 46 | 543 | 2.69e-66 | 230 |
| Msa0381450 | AT4G33860.1 | 28.947 | 532 | 329 | 13 | 208 | 723 | 46 | 544 | 4.96e-61 | 216 |
| Msa0381450 | AT4G38300.1 | 43.359 | 256 | 131 | 4 | 381 | 632 | 12 | 257 | 7.21e-60 | 204 |
| Msa0381450 | AT2G14690.1 | 31.011 | 445 | 277 | 16 | 284 | 707 | 82 | 517 | 3.10e-52 | 191 |
| Msa0381450 | AT4G33810.1 | 28.747 | 407 | 269 | 12 | 269 | 661 | 33 | 432 | 2.42e-51 | 187 |
| Msa0381450 | AT4G33810.5 | 28.747 | 407 | 269 | 12 | 269 | 661 | 33 | 432 | 2.42e-51 | 187 |
| Msa0381450 | AT4G33810.2 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.35e-51 | 188 |
| Msa0381450 | AT4G33810.3 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.35e-51 | 188 |
| Msa0381450 | AT4G33810.4 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.35e-51 | 188 |
| Msa0381450 | AT4G33820.1 | 29.049 | 389 | 259 | 10 | 284 | 661 | 90 | 472 | 7.65e-49 | 181 |
Find 187 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCTTTAGTTCGGATATT+TGG | 0.103053 | 3_1:+83569925 | Msa0381450:CDS |
| GTGTAATGCTATGGGGATTT+TGG | 0.150700 | 3_1:+83572204 | Msa0381450:CDS |
| TACATTCAAGGTCCAGTTTC+TGG | 0.151513 | 3_1:+83570999 | Msa0381450:CDS |
| TTCAAAAGTAGTTGTTTATT+TGG | 0.166485 | 3_1:+83570306 | Msa0381450:CDS |
| ATTGATGGACTTTGTAATAT+TGG | 0.179622 | 3_1:+83572586 | Msa0381450:three_prime_UTR |
| ATAAGCCAGTTAAGCGATTT+TGG | 0.179789 | 3_1:-83571743 | None:intergenic |
| GCAAAGAACTTCCCGGATTT+TGG | 0.200315 | 3_1:-83569817 | None:intergenic |
| CATGATAATCATTCACAAAT+AGG | 0.218933 | 3_1:-83571905 | None:intergenic |
| ACAGACTAGGTAAGGATATA+AGG | 0.260677 | 3_1:+83571838 | Msa0381450:CDS |
| AGTTTCTGGTGTTGACTTAA+TGG | 0.273413 | 3_1:+83571013 | Msa0381450:CDS |
| CTACTCTTGGTCAACCAATA+TGG | 0.285540 | 3_1:+83572084 | Msa0381450:CDS |
| CTCTTCCAGTCCAATTATTC+AGG | 0.294811 | 3_1:-83569747 | None:intergenic |
| CTGCTTTAGTTCGGATATTT+GGG | 0.297447 | 3_1:+83569926 | Msa0381450:CDS |
| GGTGTTGACTTAATGGTTGC+TGG | 0.301216 | 3_1:+83571020 | Msa0381450:CDS |
| TTCGCGGACATTGTATCTTC+TGG | 0.301509 | 3_1:+83571655 | Msa0381450:CDS |
| TCGAGGATGGCCTGAATAAT+TGG | 0.308205 | 3_1:+83569737 | Msa0381450:CDS |
| AAAAGGGAATTTCAACTATA+AGG | 0.329649 | 3_1:+83571587 | Msa0381450:CDS |
| AGAAATAAAATAATATTTGT+TGG | 0.340449 | 3_1:+83572612 | Msa0381450:three_prime_UTR |
| TAATGTAACGAAAAGATTGA+TGG | 0.346421 | 3_1:+83572571 | Msa0381450:three_prime_UTR |
| CCAGACATTCGTTGTTGATA+AGG | 0.367235 | 3_1:+83572427 | Msa0381450:CDS |
| GGGAAAATCCTTCCAAAATC+CGG | 0.368365 | 3_1:+83569805 | Msa0381450:CDS |
| GCTGTCCAAAATCGCTTAAC+TGG | 0.369480 | 3_1:+83571738 | Msa0381450:CDS |
| AGCAAGGGGAATTCAACTTC+AGG | 0.373704 | 3_1:+83572351 | Msa0381450:CDS |
| GCCATCTGCTGTCGGCAACT+TGG | 0.380256 | 3_1:-83570923 | None:intergenic |
| CAGACATTCGTTGTTGATAA+GGG | 0.382967 | 3_1:+83572428 | Msa0381450:CDS |
| GAGCCGCGACAATGCACATT+TGG | 0.384503 | 3_1:+83572238 | Msa0381450:CDS |
| TATTGGACAGAGCCACAAAA+AGG | 0.390280 | 3_1:+83571570 | Msa0381450:CDS |
| ATTAAGTCAACACCAGAAAC+TGG | 0.390421 | 3_1:-83571011 | None:intergenic |
| GTATTGCAGAATGTTGCTTT+TGG | 0.399531 | 3_1:+83570561 | Msa0381450:intron |
| GAAAGCCTAACCTCAAAATC+CGG | 0.403044 | 3_1:-83570409 | None:intergenic |
| GTAATGAGTTGAAGTGGTAT+TGG | 0.405250 | 3_1:+83571553 | Msa0381450:CDS |
| CCTTTAGTGTTGACGGCCAA+TGG | 0.409839 | 3_1:+83570883 | Msa0381450:CDS |
| TGCAGGCAACAGATAAAGAT+TGG | 0.414707 | 3_1:+83570245 | Msa0381450:intron |
| AAGATCAAGGTGCACCGGTT+GGG | 0.415147 | 3_1:+83571991 | Msa0381450:CDS |
| GACAATAAAATAGGAATTCA+AGG | 0.417030 | 3_1:-83572699 | None:intergenic |
| ATGATAATCATTCACAAATA+GGG | 0.417257 | 3_1:-83571904 | None:intergenic |
| CTGTTGATGGTGTAATGCTA+TGG | 0.418517 | 3_1:+83572195 | Msa0381450:CDS |
| ATATGTTCGAGGCGATGATT+TGG | 0.419778 | 3_1:+83572139 | Msa0381450:CDS |
| TCAAGCTCGGTAAACCATAT+TGG | 0.421495 | 3_1:-83572098 | None:intergenic |
| ACCACTCTTCTTTAAGATCA+AGG | 0.422719 | 3_1:-83572301 | None:intergenic |
| AGATCAAGGTGCACCGGTTG+GGG | 0.422890 | 3_1:+83571992 | Msa0381450:CDS |
| TATAATTGAGAACAGCAATC+TGG | 0.426399 | 3_1:+83570590 | Msa0381450:CDS |
| GCTTGGGTCAGGATTGGTTC+CGG | 0.428334 | 3_1:+83570831 | Msa0381450:CDS |
| TGATAAGGGTAACTCTTCAT+TGG | 0.428642 | 3_1:+83572442 | Msa0381450:CDS |
| GATCTTCGAGAGCAGTATAT+AGG | 0.430612 | 3_1:+83570000 | Msa0381450:CDS |
| CTCGATAAGTTGGCTACTCT+TGG | 0.431121 | 3_1:+83572071 | Msa0381450:CDS |
| TCGCGGACATTGTATCTTCT+GGG | 0.432457 | 3_1:+83571656 | Msa0381450:CDS |
| TAAACCGGTTGCTCACTTGC+TGG | 0.432868 | 3_1:+83572644 | Msa0381450:three_prime_UTR |
| TAAAGATTGGGCTCAAATGC+AGG | 0.434482 | 3_1:+83570258 | Msa0381450:CDS |
| ATATACTGCTCTCGAAGATC+TGG | 0.434721 | 3_1:-83569997 | None:intergenic |
| TGCAGATGCAAAGAACTTCC+CGG | 0.438822 | 3_1:-83569824 | None:intergenic |
| ATTCTTGATTTACAAGATCA+AGG | 0.439129 | 3_1:+83571978 | Msa0381450:CDS |
| AACCTGGATGGGTCCTTCTC+AGG | 0.439305 | 3_1:+83570764 | Msa0381450:CDS |
| TCTGTCCTCCGTTGGCCCAT+TGG | 0.442065 | 3_1:-83570899 | None:intergenic |
| CCATCTGCTGTCGGCAACTT+GGG | 0.445406 | 3_1:-83570922 | None:intergenic |
| ATCAAGTATCTGCTTGGGTC+AGG | 0.452969 | 3_1:+83570820 | Msa0381450:CDS |
| CAACTGAACGCACACAAAGC+TGG | 0.453239 | 3_1:+83569845 | Msa0381450:CDS |
| AAAGTAGTTGTTTATTTGGA+AGG | 0.453467 | 3_1:+83570310 | Msa0381450:CDS |
| GTACATGAGTCCATGGCAAA+TGG | 0.457411 | 3_1:+83569784 | Msa0381450:CDS |
| TAACATATCAAGTATCTGCT+TGG | 0.458399 | 3_1:+83570814 | Msa0381450:CDS |
| ATGGCACACCCTGCTGTTGA+TGG | 0.458413 | 3_1:+83572182 | Msa0381450:CDS |
| TAGTGTGGTATACTGAATAG+TGG | 0.459390 | 3_1:-83569261 | None:intergenic |
| CCTTATCAACAACGAATGTC+TGG | 0.460894 | 3_1:-83572427 | None:intergenic |
| TTCAGGCCATCCTCGAACTC+AGG | 0.461619 | 3_1:-83569730 | None:intergenic |
| TTAAAGTAACATCACGCTTA+CGG | 0.463167 | 3_1:-83571377 | None:intergenic |
| GAAGGTGAAATCAATGAAGC+TGG | 0.463874 | 3_1:+83572269 | Msa0381450:CDS |
| CAGACTAGGTAAGGATATAA+GGG | 0.465786 | 3_1:+83571839 | Msa0381450:CDS |
| ATTCTGAGGGCCATGTGATC+CGG | 0.465999 | 3_1:-83570850 | None:intergenic |
| GTATCTGCTTGGGTCAGGAT+TGG | 0.466467 | 3_1:+83570825 | Msa0381450:CDS |
| AACATATCAAGTATCTGCTT+GGG | 0.466505 | 3_1:+83570815 | Msa0381450:CDS |
| GCCTCGAACATATTCATTAG+TGG | 0.466710 | 3_1:-83572129 | None:intergenic |
| ATCTGGACAATGGCACCAAC+GGG | 0.468015 | 3_1:+83570607 | Msa0381450:CDS |
| TAACCAATCGCACTCAAACC+TGG | 0.473942 | 3_1:+83570748 | Msa0381450:CDS |
| CTTTAGTGTTGACGGCCAAT+GGG | 0.475195 | 3_1:+83570884 | Msa0381450:CDS |
| CTGAATAATTGGACTGGAAG+AGG | 0.476567 | 3_1:+83569748 | Msa0381450:CDS |
| GACAGCAGATGGCATGAAAT+CGG | 0.479030 | 3_1:+83570933 | Msa0381450:CDS |
| TCGAGTGCAGAACAAACAAT+AGG | 0.483133 | 3_1:-83572053 | None:intergenic |
| AACTTGGGTCTGTCCTCCGT+TGG | 0.487407 | 3_1:-83570907 | None:intergenic |
| TGTTGATGGTGTAATGCTAT+GGG | 0.487978 | 3_1:+83572196 | Msa0381450:CDS |
| ATGACCAGCAAGTGAGCAAC+CGG | 0.488019 | 3_1:-83572648 | None:intergenic |
| TGTACTTTGAGCATCGGAAC+TGG | 0.488314 | 3_1:+83570648 | Msa0381450:CDS |
| GGTATTGCCTTTAGTGTTGA+CGG | 0.489124 | 3_1:+83570876 | Msa0381450:CDS |
| AGAGAGTCTCTTGCCATTGG+TGG | 0.492478 | 3_1:-83570687 | None:intergenic |
| GGTTATGTTGCGCGAAGCTA+TGG | 0.493387 | 3_1:+83572163 | Msa0381450:CDS |
| ATGAGGTCACTGCTTTAGTT+CGG | 0.493909 | 3_1:+83569917 | Msa0381450:CDS |
| GCTTCAGAACTTGTATTACA+TGG | 0.497382 | 3_1:+83572485 | Msa0381450:three_prime_UTR |
| CATACTAAATCCTGAGTTCG+AGG | 0.497515 | 3_1:+83569720 | Msa0381450:CDS |
| AACTCGGAGATGATCAATGC+TGG | 0.498002 | 3_1:+83569208 | Msa0381450:CDS |
| AGAAGAATGTCAGTGCCTCC+AGG | 0.498736 | 3_1:-83570337 | None:intergenic |
| CGACAGCAATGTTCAACAAT+GGG | 0.503377 | 3_1:+83571683 | Msa0381450:CDS |
| GTATTAGAAGTACATGCCTC+AGG | 0.505454 | 3_1:-83569238 | None:intergenic |
| TTATCAAGACAGACTAGGTA+AGG | 0.507118 | 3_1:+83571830 | Msa0381450:CDS |
| CATCCAGGTTTGAGTGCGAT+TGG | 0.509313 | 3_1:-83570751 | None:intergenic |
| AACCTTGCCTGCCTATCGAC+AGG | 0.513887 | 3_1:-83571056 | None:intergenic |
| TCCACTAATGAATATGTTCG+AGG | 0.514151 | 3_1:+83572128 | Msa0381450:CDS |
| CCATTGGCCGTCAACACTAA+AGG | 0.515778 | 3_1:-83570883 | None:intergenic |
| TACATGAGTCCATGGCAAAT+GGG | 0.515874 | 3_1:+83569785 | Msa0381450:CDS |
| TCCTTGATCTTAAAGAAGAG+TGG | 0.516884 | 3_1:+83572300 | Msa0381450:CDS |
| AAAGCCTAACCTCAAAATCC+GGG | 0.520954 | 3_1:-83570408 | None:intergenic |
| CAAGATCAAGGTGCACCGGT+TGG | 0.524874 | 3_1:+83571990 | Msa0381450:CDS |
| GGTAATTGTACTTTGAGCAT+CGG | 0.525699 | 3_1:+83570642 | Msa0381450:CDS |
| TGTTCGAGGCGATGATTTGG+AGG | 0.526599 | 3_1:+83572142 | Msa0381450:CDS |
| CAAGAATGTAACGTCCACTC+AGG | 0.526881 | 3_1:-83570725 | None:intergenic |
| GGAATTCAGCAAGAAATCAC+TGG | 0.527804 | 3_1:+83569871 | Msa0381450:CDS |
| ACCAACGGGTGGTCTCCTCT+TGG | 0.529762 | 3_1:+83570621 | Msa0381450:CDS |
| CTATTGATGCACGATCCAAT+TGG | 0.531809 | 3_1:-83571465 | None:intergenic |
| AACTAAAGCAGTGACCTCAT+AGG | 0.532142 | 3_1:-83569914 | None:intergenic |
| CGCCTGAGAAGGACCCATCC+AGG | 0.534151 | 3_1:-83570766 | None:intergenic |
| GCAGCGCAAGCTTGCCTATG+AGG | 0.535069 | 3_1:+83569900 | Msa0381450:CDS |
| ATCACCACCTTCGACACCCC+CGG | 0.535089 | 3_1:+83570390 | Msa0381450:CDS |
| GAACGCACACAAAGCTGGAA+TGG | 0.536071 | 3_1:+83569850 | Msa0381450:CDS |
| AATGATTATCATGTTGAAGA+TGG | 0.536653 | 3_1:+83571915 | Msa0381450:CDS |
| GGAAAATCCTTCCAAAATCC+GGG | 0.538434 | 3_1:+83569806 | Msa0381450:CDS |
| TTGTTCTGCACTCGATAAGT+TGG | 0.539626 | 3_1:+83572061 | Msa0381450:CDS |
| AGCATTACACCATCAACAGC+AGG | 0.541258 | 3_1:-83572191 | None:intergenic |
| CCCAAGTTGCCGACAGCAGA+TGG | 0.542895 | 3_1:+83570922 | Msa0381450:CDS |
| GCAAGGGGAATTCAACTTCA+GGG | 0.545056 | 3_1:+83572352 | Msa0381450:CDS |
| CCAAGAGAGTCTCTTGCCAT+TGG | 0.545489 | 3_1:-83570690 | None:intergenic |
| ATGGTCATCTTGATGAGCAA+GGG | 0.549623 | 3_1:+83572336 | Msa0381450:CDS |
| CAATCGCACTCAAACCTGGA+TGG | 0.554026 | 3_1:+83570752 | Msa0381450:CDS |
| ATGAGATGGAGATACTAACT+TGG | 0.555489 | 3_1:-83570028 | None:intergenic |
| GCAGGCAACAGATAAAGATT+GGG | 0.558763 | 3_1:+83570246 | Msa0381450:intron |
| AATCTGGACAATGGCACCAA+CGG | 0.563221 | 3_1:+83570606 | Msa0381450:CDS |
| GGTCACATTGATAGTCCTGT+GGG | 0.563973 | 3_1:+83572029 | Msa0381450:CDS |
| TTCTCAGTGATCGCCTGAGA+AGG | 0.568117 | 3_1:-83570777 | None:intergenic |
| TTCAACTTCAGGGGATTCAG+TGG | 0.569777 | 3_1:+83572362 | Msa0381450:CDS |
| CTAAATCCTGAGTTCGAGGA+TGG | 0.569968 | 3_1:+83569724 | Msa0381450:CDS |
| GGCTTATTGTCTCGCTACAA+AGG | 0.570792 | 3_1:+83571759 | Msa0381450:CDS |
| GATGGCCTGAATAATTGGAC+TGG | 0.575465 | 3_1:+83569742 | Msa0381450:CDS |
| AGGATTGGTTCCGGATCACA+TGG | 0.576001 | 3_1:+83570840 | Msa0381450:CDS |
| GATTGCAGTACATGAGTCCA+TGG | 0.578636 | 3_1:+83569777 | Msa0381450:CDS |
| AAGGCAATACCAACATTCTG+AGG | 0.578941 | 3_1:-83570864 | None:intergenic |
| CATGGTCATCTTGATGAGCA+AGG | 0.581813 | 3_1:+83572335 | Msa0381450:CDS |
| AAGAATGTAACGTCCACTCA+GGG | 0.582309 | 3_1:-83570724 | None:intergenic |
| TCACATGGCCCTCAGAATGT+TGG | 0.584688 | 3_1:+83570855 | Msa0381450:CDS |
| AATCGCACTCAAACCTGGAT+GGG | 0.586825 | 3_1:+83570753 | Msa0381450:CDS |
| AAGAATGTCAGTGCCTCCAG+GGG | 0.587074 | 3_1:-83570335 | None:intergenic |
| TTCACAAATAGGGTAGCAGA+TGG | 0.588059 | 3_1:-83571894 | None:intergenic |
| ACCGCGTGTAATTCCACCAA+TGG | 0.588150 | 3_1:+83570674 | Msa0381450:CDS |
| AGTGTGGTATACTGAATAGT+GGG | 0.591386 | 3_1:-83569260 | None:intergenic |
| GTTGACGGCCAATGGGCCAA+CGG | 0.594155 | 3_1:+83570891 | Msa0381450:CDS |
| TTGAGAAACTATGGAAAACT+CGG | 0.594826 | 3_1:+83569192 | None:intergenic |
| TCGACAGCAATGTTCAACAA+TGG | 0.595009 | 3_1:+83571682 | Msa0381450:CDS |
| AAAGATTGGGCTCAAATGCA+GGG | 0.597935 | 3_1:+83570259 | Msa0381450:CDS |
| TTCCTGTCGATAGGCAGGCA+AGG | 0.599356 | 3_1:+83571054 | Msa0381450:CDS |
| AAGGTGAAATCAATGAAGCT+GGG | 0.599849 | 3_1:+83572270 | Msa0381450:CDS |
| GAACAAACAATAGGCCCCAC+AGG | 0.602172 | 3_1:-83572044 | None:intergenic |
| GGGTAGCAGATGGATCTAGC+TGG | 0.605427 | 3_1:-83571884 | None:intergenic |
| CAAGGGGAATTCAACTTCAG+GGG | 0.608694 | 3_1:+83572353 | Msa0381450:CDS |
| TCACCAAATGTGCATTGTCG+CGG | 0.609213 | 3_1:-83572241 | None:intergenic |
| CCAATGGCAAGAGACTCTCT+TGG | 0.609407 | 3_1:+83570690 | Msa0381450:CDS |
| AAGTACAAGATAGACATTCG+CGG | 0.610751 | 3_1:+83571639 | Msa0381450:CDS |
| TTTACAAGATCAAGGTGCAC+CGG | 0.614232 | 3_1:+83571986 | Msa0381450:CDS |
| AGGTCACATTGATAGTCCTG+TGG | 0.614882 | 3_1:+83572028 | Msa0381450:CDS |
| GAAGAATGTCAGTGCCTCCA+GGG | 0.615547 | 3_1:-83570336 | None:intergenic |
| CGTCCACTCAGGGGTTCATG+AGG | 0.617450 | 3_1:-83570714 | None:intergenic |
| GAGTGGTTATCTCACACTCA+TGG | 0.618320 | 3_1:+83572317 | Msa0381450:CDS |
| GTTAACAATGAAATGTTGCA+TGG | 0.621327 | 3_1:+83571801 | Msa0381450:CDS |
| TATTAGAAGTACATGCCTCA+GGG | 0.623116 | 3_1:-83569237 | None:intergenic |
| GATTTCATGCCATCTGCTGT+CGG | 0.625782 | 3_1:-83570931 | None:intergenic |
| TGGTCATCTTGATGAGCAAG+GGG | 0.626339 | 3_1:+83572337 | Msa0381450:CDS |
| ATTCAGTGGTTTGTACAATG+TGG | 0.629627 | 3_1:+83572376 | Msa0381450:CDS |
| AGTGGAAGACACATCAAGCT+CGG | 0.630111 | 3_1:-83572111 | None:intergenic |
| TATTTGTTTAACTTTCACAA+AGG | 0.638165 | 3_1:-83571430 | None:intergenic |
| TGGACAATGGCACCAACGGG+TGG | 0.640136 | 3_1:+83570610 | Msa0381450:CDS |
| GACGGCCAATGGGCCAACGG+AGG | 0.644893 | 3_1:+83570894 | Msa0381450:CDS |
| GCACATTTGGTGAATGCAGA+AGG | 0.645010 | 3_1:+83572251 | Msa0381450:CDS |
| TATTTGGTAATGAGTTGAAG+TGG | 0.647331 | 3_1:+83571547 | Msa0381450:CDS |
| AAGCCTAACCTCAAAATCCG+GGG | 0.648361 | 3_1:-83570407 | None:intergenic |
| AGGCAATACCAACATTCTGA+GGG | 0.648383 | 3_1:-83570863 | None:intergenic |
| GGTCCTCATGAACCCCTGAG+TGG | 0.651275 | 3_1:+83570711 | Msa0381450:CDS |
| GAGAACAGCAATCTGGACAA+TGG | 0.655529 | 3_1:+83570597 | Msa0381450:CDS |
| GATCAAGGTGCACCGGTTGG+GGG | 0.665415 | 3_1:+83571993 | Msa0381450:CDS |
| CTCAAAGTACAATTACCAAG+AGG | 0.666083 | 3_1:-83570636 | None:intergenic |
| GCCATTGGTGGAATTACACG+CGG | 0.667698 | 3_1:-83570675 | None:intergenic |
| AGCAGATGGCATGAAATCGG+TGG | 0.673951 | 3_1:+83570936 | Msa0381450:CDS |
| AGCCTAACCTCAAAATCCGG+GGG | 0.687022 | 3_1:-83570406 | None:intergenic |
| GCATTACACCATCAACAGCA+GGG | 0.689307 | 3_1:-83572190 | None:intergenic |
| ACCAAGAGGAGACCACCCGT+TGG | 0.691945 | 3_1:-83570622 | None:intergenic |
| GTTGATGGTGTAATGCTATG+GGG | 0.699342 | 3_1:+83572197 | Msa0381450:CDS |
| AGAATGTCAGTGCCTCCAGG+GGG | 0.711793 | 3_1:-83570334 | None:intergenic |
| TAGAAGTACATGCCTCAGGG+AGG | 0.715770 | 3_1:-83569234 | None:intergenic |
| GAATGTCAGTGCCTCCAGGG+GGG | 0.716647 | 3_1:-83570333 | None:intergenic |
| AGAATGTAACGTCCACTCAG+GGG | 0.726251 | 3_1:-83570723 | None:intergenic |
| CAATGCTGGAAACCTCCCTG+AGG | 0.737374 | 3_1:+83569222 | Msa0381450:CDS |
| TTTATGCGAGCAGACAGACA+AGG | 0.748258 | 3_1:+83571085 | Msa0381450:CDS |
| GTCACATTGATAGTCCTGTG+GGG | 0.751087 | 3_1:+83572030 | Msa0381450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATAAAATAATATTTGT+TGG | + | chr3_1:83572612-83572631 | Msa0381450:three_prime_UTR | 10.0% |
| !!! | GTTAAATATCTCTTATTTTT+TGG | + | chr3_1:83571254-83571273 | Msa0381450:intron | 15.0% |
| !!! | ATGTTACTTTAAAATTTTCT+GGG | + | chr3_1:83571388-83571407 | Msa0381450:CDS | 15.0% |
| !!! | GGTACATAATTATTTCATTT+TGG | - | chr3_1:83569336-83569355 | None:intergenic | 20.0% |
| !! | TAGAATATTTACAATCACTT+CGG | - | chr3_1:83569499-83569518 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCTTCTGAAATAA+GGG | - | chr3_1:83569667-83569686 | None:intergenic | 20.0% |
| !!! | AATAAACAACTACTTTTGAA+GGG | - | chr3_1:83570306-83570325 | None:intergenic | 20.0% |
| !!! | AAATAAACAACTACTTTTGA+AGG | - | chr3_1:83570307-83570326 | None:intergenic | 20.0% |
| !! | TTCAAAAGTAGTTGTTTATT+TGG | + | chr3_1:83570306-83570325 | Msa0381450:CDS | 20.0% |
| !! | ATGTAAACAAAAACATTAGA+TGG | - | chr3_1:83570984-83571003 | None:intergenic | 20.0% |
| !!! | AATGTTTTTGTTTACATTCA+AGG | + | chr3_1:83570987-83571006 | Msa0381450:CDS | 20.0% |
| !!! | ACGAATTATTGAATTTTCAT+TGG | + | chr3_1:83571125-83571144 | Msa0381450:intron | 20.0% |
| !!! | GATGTTACTTTAAAATTTTC+TGG | + | chr3_1:83571387-83571406 | Msa0381450:CDS | 20.0% |
| !!! | TATTTGTTTAACTTTCACAA+AGG | - | chr3_1:83571433-83571452 | None:intergenic | 20.0% |
| !! | GAATAAAAATGATTTACTGA+CGG | + | chr3_1:83571716-83571735 | Msa0381450:CDS | 20.0% |
| !! | ATGATAATCATTCACAAATA+GGG | - | chr3_1:83571907-83571926 | None:intergenic | 20.0% |
| ! | TAAACATATGAAAAGTAGTG+TGG | - | chr3_1:83569279-83569298 | None:intergenic | 25.0% |
| !!! | ATGTGTTTGATTTGTTAACA+AGG | + | chr3_1:83569298-83569317 | Msa0381450:intron | 25.0% |
| !!! | TGTGTTTGATTTGTTAACAA+GGG | + | chr3_1:83569299-83569318 | Msa0381450:intron | 25.0% |
| !!! | TTGTTTTCTTCTGAAATAAG+GGG | - | chr3_1:83569666-83569685 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTCTTCTGAAATA+AGG | - | chr3_1:83569668-83569687 | None:intergenic | 25.0% |
| ! | AGGTAAAGAAATAAATGAGA+TGG | - | chr3_1:83570045-83570064 | None:intergenic | 25.0% |
| ! | CATGTCATTATTCTATGTAT+AGG | - | chr3_1:83570065-83570084 | None:intergenic | 25.0% |
| ! | CATATCTTTAAATTGCTGAA+CGG | + | chr3_1:83570203-83570222 | Msa0381450:intron | 25.0% |
| !!! | ATAAACAACTACTTTTGAAG+GGG | - | chr3_1:83570305-83570324 | None:intergenic | 25.0% |
| ! | AAAGTAGTTGTTTATTTGGA+AGG | + | chr3_1:83570310-83570329 | Msa0381450:CDS | 25.0% |
| ! | AAAAGGGAATTTCAACTATA+AGG | + | chr3_1:83571587-83571606 | Msa0381450:CDS | 25.0% |
| ! | CATGATAATCATTCACAAAT+AGG | - | chr3_1:83571908-83571927 | None:intergenic | 25.0% |
| ! | AATGATTATCATGTTGAAGA+TGG | + | chr3_1:83571915-83571934 | Msa0381450:CDS | 25.0% |
| ! | ATTCTTGATTTACAAGATCA+AGG | + | chr3_1:83571978-83571997 | Msa0381450:CDS | 25.0% |
| !! | TTTTCGTTACATTAAGAACT+TGG | - | chr3_1:83572565-83572584 | None:intergenic | 25.0% |
| ! | TAATGTAACGAAAAGATTGA+TGG | + | chr3_1:83572571-83572590 | Msa0381450:three_prime_UTR | 25.0% |
| !!! | ATTGATGGACTTTGTAATAT+TGG | + | chr3_1:83572586-83572605 | Msa0381450:three_prime_UTR | 25.0% |
| !!! | TGTTGGTTTTGTTATTAAAC+CGG | + | chr3_1:83572629-83572648 | Msa0381450:three_prime_UTR | 25.0% |
| TCATGAAACAAAGAGAGAAA+TGG | - | chr3_1:83569603-83569622 | None:intergenic | 30.0% | |
| !!! | TGTTTTCTTCTGAAATAAGG+GGG | - | chr3_1:83569665-83569684 | None:intergenic | 30.0% |
| !! | TAAACAACTACTTTTGAAGG+GGG | - | chr3_1:83570304-83570323 | None:intergenic | 30.0% |
| TATAATTGAGAACAGCAATC+TGG | + | chr3_1:83570590-83570609 | Msa0381450:CDS | 30.0% | |
| TAACATATCAAGTATCTGCT+TGG | + | chr3_1:83570814-83570833 | Msa0381450:CDS | 30.0% | |
| AACATATCAAGTATCTGCTT+GGG | + | chr3_1:83570815-83570834 | Msa0381450:CDS | 30.0% | |
| ! | TTCAAATTTTTCCTGTCGAT+AGG | + | chr3_1:83571045-83571064 | Msa0381450:CDS | 30.0% |
| ! | ATTGAATTTTCATTGGACGT+TGG | + | chr3_1:83571132-83571151 | Msa0381450:intron | 30.0% |
| TTAAAGTAACATCACGCTTA+CGG | - | chr3_1:83571380-83571399 | None:intergenic | 30.0% | |
| !!! | TACTTTAAAATTTTCTGGGC+TGG | + | chr3_1:83571392-83571411 | Msa0381450:CDS | 30.0% |
| ! | ATACAGAACGATTTTCCAAT+TGG | + | chr3_1:83571450-83571469 | Msa0381450:CDS | 30.0% |
| !! | TCTTTGTGCAACATTTTAAC+TGG | + | chr3_1:83571520-83571539 | Msa0381450:CDS | 30.0% |
| !!! | CTTTGTGCAACATTTTAACT+GGG | + | chr3_1:83571521-83571540 | Msa0381450:CDS | 30.0% |
| !! | TATTTGGTAATGAGTTGAAG+TGG | + | chr3_1:83571547-83571566 | Msa0381450:CDS | 30.0% |
| ! | TAGTTGAAATTCCCTTTTTG+TGG | - | chr3_1:83571585-83571604 | None:intergenic | 30.0% |
| GTTAACAATGAAATGTTGCA+TGG | + | chr3_1:83571801-83571820 | Msa0381450:CDS | 30.0% | |
| ! | TCATTTTATCAAGACAGACT+AGG | + | chr3_1:83571825-83571844 | Msa0381450:CDS | 30.0% |
| ! | ATCTGTTGTGTGTATTTTTC+TGG | - | chr3_1:83571960-83571979 | None:intergenic | 30.0% |
| !!! | CTGGCAAATTACTTTTTCAA+AGG | - | chr3_1:83572411-83572430 | None:intergenic | 30.0% |
| ! | TATTAGAAGTACATGCCTCA+GGG | - | chr3_1:83569240-83569259 | None:intergenic | 35.0% |
| AGTGTGGTATACTGAATAGT+GGG | - | chr3_1:83569263-83569282 | None:intergenic | 35.0% | |
| TAGTGTGGTATACTGAATAG+TGG | - | chr3_1:83569264-83569283 | None:intergenic | 35.0% | |
| TAACAAAACGCAAACACGAA+TGG | - | chr3_1:83569357-83569376 | None:intergenic | 35.0% | |
| !! | AGAGCATTGGATTTGATTGT+AGG | + | chr3_1:83569406-83569425 | Msa0381450:intron | 35.0% |
| ! | CAAACTCATAACTTGTGTAG+TGG | + | chr3_1:83569553-83569572 | Msa0381450:intron | 35.0% |
| ! | TATGATGTTTTCATCGTCAG+TGG | - | chr3_1:83569704-83569723 | None:intergenic | 35.0% |
| ! | ACTGCTTTAGTTCGGATATT+TGG | + | chr3_1:83569925-83569944 | Msa0381450:CDS | 35.0% |
| ! | CTGCTTTAGTTCGGATATTT+GGG | + | chr3_1:83569926-83569945 | Msa0381450:CDS | 35.0% |
| ATGAGATGGAGATACTAACT+TGG | - | chr3_1:83570031-83570050 | None:intergenic | 35.0% | |
| !!! | GTATTGCAGAATGTTGCTTT+TGG | + | chr3_1:83570561-83570580 | Msa0381450:intron | 35.0% |
| CTCAAAGTACAATTACCAAG+AGG | - | chr3_1:83570639-83570658 | None:intergenic | 35.0% | |
| GGTAATTGTACTTTGAGCAT+CGG | + | chr3_1:83570642-83570661 | Msa0381450:CDS | 35.0% | |
| ATTAAGTCAACACCAGAAAC+TGG | - | chr3_1:83571014-83571033 | None:intergenic | 35.0% | |
| !! | AGTTTCTGGTGTTGACTTAA+TGG | + | chr3_1:83571013-83571032 | Msa0381450:CDS | 35.0% |
| !!! | CATTTTAACTGGGCTGTATT+TGG | + | chr3_1:83571531-83571550 | Msa0381450:CDS | 35.0% |
| ! | GTAATGAGTTGAAGTGGTAT+TGG | + | chr3_1:83571553-83571572 | Msa0381450:CDS | 35.0% |
| AAGTACAAGATAGACATTCG+CGG | + | chr3_1:83571639-83571658 | Msa0381450:CDS | 35.0% | |
| ! | ATAAGCCAGTTAAGCGATTT+TGG | - | chr3_1:83571746-83571765 | None:intergenic | 35.0% |
| TTATCAAGACAGACTAGGTA+AGG | + | chr3_1:83571830-83571849 | Msa0381450:CDS | 35.0% | |
| ACAGACTAGGTAAGGATATA+AGG | + | chr3_1:83571838-83571857 | Msa0381450:CDS | 35.0% | |
| CAGACTAGGTAAGGATATAA+GGG | + | chr3_1:83571839-83571858 | Msa0381450:CDS | 35.0% | |
| TCCACTAATGAATATGTTCG+AGG | + | chr3_1:83572128-83572147 | Msa0381450:CDS | 35.0% | |
| !! | TGTTGATGGTGTAATGCTAT+GGG | + | chr3_1:83572196-83572215 | Msa0381450:CDS | 35.0% |
| ! | TGTAATGCTATGGGGATTTT+GGG | + | chr3_1:83572205-83572224 | Msa0381450:CDS | 35.0% |
| AAGGTGAAATCAATGAAGCT+GGG | + | chr3_1:83572270-83572289 | Msa0381450:CDS | 35.0% | |
| TCCTTGATCTTAAAGAAGAG+TGG | + | chr3_1:83572300-83572319 | Msa0381450:CDS | 35.0% | |
| !! | ACCACTCTTCTTTAAGATCA+AGG | - | chr3_1:83572304-83572323 | None:intergenic | 35.0% |
| ! | ATTCAGTGGTTTGTACAATG+TGG | + | chr3_1:83572376-83572395 | Msa0381450:CDS | 35.0% |
| ! | CAGACATTCGTTGTTGATAA+GGG | + | chr3_1:83572428-83572447 | Msa0381450:CDS | 35.0% |
| TGATAAGGGTAACTCTTCAT+TGG | + | chr3_1:83572442-83572461 | Msa0381450:CDS | 35.0% | |
| GCTTCAGAACTTGTATTACA+TGG | + | chr3_1:83572485-83572504 | Msa0381450:three_prime_UTR | 35.0% | |
| ! | GTATTAGAAGTACATGCCTC+AGG | - | chr3_1:83569241-83569260 | None:intergenic | 40.0% |
| ! | TTTTGTTAAGCCGTTCCCTT+TGG | + | chr3_1:83569369-83569388 | Msa0381450:intron | 40.0% |
| TATGTCCTACGATAGCCAAA+GGG | - | chr3_1:83569387-83569406 | None:intergenic | 40.0% | |
| TATCGTAGGACATAGAGCAT+TGG | + | chr3_1:83569393-83569412 | Msa0381450:intron | 40.0% | |
| CATACTAAATCCTGAGTTCG+AGG | + | chr3_1:83569720-83569739 | Msa0381450:CDS | 40.0% | |
| CTCTTCCAGTCCAATTATTC+AGG | - | chr3_1:83569750-83569769 | None:intergenic | 40.0% | |
| ! | CTGAATAATTGGACTGGAAG+AGG | + | chr3_1:83569748-83569767 | Msa0381450:CDS | 40.0% |
| TACATGAGTCCATGGCAAAT+GGG | + | chr3_1:83569785-83569804 | Msa0381450:CDS | 40.0% | |
| ! | AAGGATTTTCCCATTTGCCA+TGG | - | chr3_1:83569797-83569816 | None:intergenic | 40.0% |
| GGGAAAATCCTTCCAAAATC+CGG | + | chr3_1:83569805-83569824 | Msa0381450:CDS | 40.0% | |
| GGAAAATCCTTCCAAAATCC+GGG | + | chr3_1:83569806-83569825 | Msa0381450:CDS | 40.0% | |
| GGAATTCAGCAAGAAATCAC+TGG | + | chr3_1:83569871-83569890 | Msa0381450:CDS | 40.0% | |
| AACTAAAGCAGTGACCTCAT+AGG | - | chr3_1:83569917-83569936 | None:intergenic | 40.0% | |
| ATGAGGTCACTGCTTTAGTT+CGG | + | chr3_1:83569917-83569936 | Msa0381450:CDS | 40.0% | |
| ATATACTGCTCTCGAAGATC+TGG | - | chr3_1:83570000-83570019 | None:intergenic | 40.0% | |
| GATCTTCGAGAGCAGTATAT+AGG | + | chr3_1:83570000-83570019 | Msa0381450:CDS | 40.0% | |
| GAATAATGACATGACTGCTG+TGG | + | chr3_1:83570072-83570091 | Msa0381450:intron | 40.0% | |
| !! | GACTGCTGTGGTTATTTTCT+TGG | + | chr3_1:83570084-83570103 | Msa0381450:intron | 40.0% |
| TTTGCGATACTAAAGTGTGC+AGG | + | chr3_1:83570228-83570247 | Msa0381450:intron | 40.0% | |
| TGCAGGCAACAGATAAAGAT+TGG | + | chr3_1:83570245-83570264 | Msa0381450:intron | 40.0% | |
| GCAGGCAACAGATAAAGATT+GGG | + | chr3_1:83570246-83570265 | Msa0381450:intron | 40.0% | |
| TAAAGATTGGGCTCAAATGC+AGG | + | chr3_1:83570258-83570277 | Msa0381450:CDS | 40.0% | |
| AAAGATTGGGCTCAAATGCA+GGG | + | chr3_1:83570259-83570278 | Msa0381450:CDS | 40.0% | |
| TTGAAGGGGGATCATTTAGA+AGG | - | chr3_1:83570291-83570310 | None:intergenic | 40.0% | |
| AAAGCCTAACCTCAAAATCC+GGG | - | chr3_1:83570411-83570430 | None:intergenic | 40.0% | |
| GAAAGCCTAACCTCAAAATC+CGG | - | chr3_1:83570412-83570431 | None:intergenic | 40.0% | |
| !! | CTATGATGCCTTTTGTTGTG+TGG | + | chr3_1:83570501-83570520 | Msa0381450:intron | 40.0% |
| AGAATCGACCACACAACAAA+AGG | - | chr3_1:83570512-83570531 | None:intergenic | 40.0% | |
| AAGAATGTAACGTCCACTCA+GGG | - | chr3_1:83570727-83570746 | None:intergenic | 40.0% | |
| AGGCAATACCAACATTCTGA+GGG | - | chr3_1:83570866-83570885 | None:intergenic | 40.0% | |
| AAGGCAATACCAACATTCTG+AGG | - | chr3_1:83570867-83570886 | None:intergenic | 40.0% | |
| ! | GGTATTGCCTTTAGTGTTGA+CGG | + | chr3_1:83570876-83570895 | Msa0381450:CDS | 40.0% |
| TACATTCAAGGTCCAGTTTC+TGG | + | chr3_1:83570999-83571018 | Msa0381450:CDS | 40.0% | |
| ! | AATTTTTCCTGTCGATAGGC+AGG | + | chr3_1:83571049-83571068 | Msa0381450:CDS | 40.0% |
| CTATTGATGCACGATCCAAT+TGG | - | chr3_1:83571468-83571487 | None:intergenic | 40.0% | |
| TATTGGACAGAGCCACAAAA+AGG | + | chr3_1:83571570-83571589 | Msa0381450:CDS | 40.0% | |
| ATTGGACAGAGCCACAAAAA+GGG | + | chr3_1:83571571-83571590 | Msa0381450:CDS | 40.0% | |
| TCGACAGCAATGTTCAACAA+TGG | + | chr3_1:83571682-83571701 | Msa0381450:CDS | 40.0% | |
| CGACAGCAATGTTCAACAAT+GGG | + | chr3_1:83571683-83571702 | Msa0381450:CDS | 40.0% | |
| TTCACAAATAGGGTAGCAGA+TGG | - | chr3_1:83571897-83571916 | None:intergenic | 40.0% | |
| TTTACAAGATCAAGGTGCAC+CGG | + | chr3_1:83571986-83572005 | Msa0381450:CDS | 40.0% | |
| TCGAGTGCAGAACAAACAAT+AGG | - | chr3_1:83572056-83572075 | None:intergenic | 40.0% | |
| TTGTTCTGCACTCGATAAGT+TGG | + | chr3_1:83572061-83572080 | Msa0381450:CDS | 40.0% | |
| CTACTCTTGGTCAACCAATA+TGG | + | chr3_1:83572084-83572103 | Msa0381450:CDS | 40.0% | |
| TCAAGCTCGGTAAACCATAT+TGG | - | chr3_1:83572101-83572120 | None:intergenic | 40.0% | |
| GCCTCGAACATATTCATTAG+TGG | - | chr3_1:83572132-83572151 | None:intergenic | 40.0% | |
| ATATGTTCGAGGCGATGATT+TGG | + | chr3_1:83572139-83572158 | Msa0381450:CDS | 40.0% | |
| !! | CTGTTGATGGTGTAATGCTA+TGG | + | chr3_1:83572195-83572214 | Msa0381450:CDS | 40.0% |
| !! | GTTGATGGTGTAATGCTATG+GGG | + | chr3_1:83572197-83572216 | Msa0381450:CDS | 40.0% |
| ! | GTGTAATGCTATGGGGATTT+TGG | + | chr3_1:83572204-83572223 | Msa0381450:CDS | 40.0% |
| GAAGGTGAAATCAATGAAGC+TGG | + | chr3_1:83572269-83572288 | Msa0381450:CDS | 40.0% | |
| ATGGTCATCTTGATGAGCAA+GGG | + | chr3_1:83572336-83572355 | Msa0381450:CDS | 40.0% | |
| CCTTATCAACAACGAATGTC+TGG | - | chr3_1:83572430-83572449 | None:intergenic | 40.0% | |
| CCAGACATTCGTTGTTGATA+AGG | + | chr3_1:83572427-83572446 | Msa0381450:CDS | 40.0% | |
| AACTCGGAGATGATCAATGC+TGG | + | chr3_1:83569208-83569227 | Msa0381450:CDS | 45.0% | |
| CTATGTCCTACGATAGCCAA+AGG | - | chr3_1:83569388-83569407 | None:intergenic | 45.0% | |
| CTAAATCCTGAGTTCGAGGA+TGG | + | chr3_1:83569724-83569743 | Msa0381450:CDS | 45.0% | |
| TCGAGGATGGCCTGAATAAT+TGG | + | chr3_1:83569737-83569756 | Msa0381450:CDS | 45.0% | |
| GATGGCCTGAATAATTGGAC+TGG | + | chr3_1:83569742-83569761 | Msa0381450:CDS | 45.0% | |
| GATTGCAGTACATGAGTCCA+TGG | + | chr3_1:83569777-83569796 | Msa0381450:CDS | 45.0% | |
| GTACATGAGTCCATGGCAAA+TGG | + | chr3_1:83569784-83569803 | Msa0381450:CDS | 45.0% | |
| ! | AGAACTTCCCGGATTTTGGA+AGG | - | chr3_1:83569816-83569835 | None:intergenic | 45.0% |
| ! | GCAAAGAACTTCCCGGATTT+TGG | - | chr3_1:83569820-83569839 | None:intergenic | 45.0% |
| TGCAGATGCAAAGAACTTCC+CGG | - | chr3_1:83569827-83569846 | None:intergenic | 45.0% | |
| AAGCCTAACCTCAAAATCCG+GGG | - | chr3_1:83570410-83570429 | None:intergenic | 45.0% | |
| GAGAACAGCAATCTGGACAA+TGG | + | chr3_1:83570597-83570616 | Msa0381450:CDS | 45.0% | |
| AATCTGGACAATGGCACCAA+CGG | + | chr3_1:83570606-83570625 | Msa0381450:CDS | 45.0% | |
| !! | TGTACTTTGAGCATCGGAAC+TGG | + | chr3_1:83570648-83570667 | Msa0381450:CDS | 45.0% |
| AGAATGTAACGTCCACTCAG+GGG | - | chr3_1:83570726-83570745 | None:intergenic | 45.0% | |
| CAAGAATGTAACGTCCACTC+AGG | - | chr3_1:83570728-83570747 | None:intergenic | 45.0% | |
| TAACCAATCGCACTCAAACC+TGG | + | chr3_1:83570748-83570767 | Msa0381450:CDS | 45.0% | |
| AATCGCACTCAAACCTGGAT+GGG | + | chr3_1:83570753-83570772 | Msa0381450:CDS | 45.0% | |
| ATCAAGTATCTGCTTGGGTC+AGG | + | chr3_1:83570820-83570839 | Msa0381450:CDS | 45.0% | |
| !! | CTTTAGTGTTGACGGCCAAT+GGG | + | chr3_1:83570884-83570903 | Msa0381450:CDS | 45.0% |
| GATTTCATGCCATCTGCTGT+CGG | - | chr3_1:83570934-83570953 | None:intergenic | 45.0% | |
| GACAGCAGATGGCATGAAAT+CGG | + | chr3_1:83570933-83570952 | Msa0381450:CDS | 45.0% | |
| !! | GGTGTTGACTTAATGGTTGC+TGG | + | chr3_1:83571020-83571039 | Msa0381450:CDS | 45.0% |
| TTTATGCGAGCAGACAGACA+AGG | + | chr3_1:83571085-83571104 | Msa0381450:CDS | 45.0% | |
| TTCGCGGACATTGTATCTTC+TGG | + | chr3_1:83571655-83571674 | Msa0381450:CDS | 45.0% | |
| TCGCGGACATTGTATCTTCT+GGG | + | chr3_1:83571656-83571675 | Msa0381450:CDS | 45.0% | |
| GCTGTCCAAAATCGCTTAAC+TGG | + | chr3_1:83571738-83571757 | Msa0381450:CDS | 45.0% | |
| GGCTTATTGTCTCGCTACAA+AGG | + | chr3_1:83571759-83571778 | Msa0381450:CDS | 45.0% | |
| TGAATTCCTATTCCCCCAAC+CGG | - | chr3_1:83572008-83572027 | None:intergenic | 45.0% | |
| GTTGGGGGAATAGGAATTCA+AGG | + | chr3_1:83572008-83572027 | Msa0381450:CDS | 45.0% | |
| ! | AGGTCACATTGATAGTCCTG+TGG | + | chr3_1:83572028-83572047 | Msa0381450:CDS | 45.0% |
| ! | GGTCACATTGATAGTCCTGT+GGG | + | chr3_1:83572029-83572048 | Msa0381450:CDS | 45.0% |
| ! | GTCACATTGATAGTCCTGTG+GGG | + | chr3_1:83572030-83572049 | Msa0381450:CDS | 45.0% |
| ! | CTCGATAAGTTGGCTACTCT+TGG | + | chr3_1:83572071-83572090 | Msa0381450:CDS | 45.0% |
| AGTGGAAGACACATCAAGCT+CGG | - | chr3_1:83572114-83572133 | None:intergenic | 45.0% | |
| GCATTACACCATCAACAGCA+GGG | - | chr3_1:83572193-83572212 | None:intergenic | 45.0% | |
| AGCATTACACCATCAACAGC+AGG | - | chr3_1:83572194-83572213 | None:intergenic | 45.0% | |
| TCACCAAATGTGCATTGTCG+CGG | - | chr3_1:83572244-83572263 | None:intergenic | 45.0% | |
| ! | GCACATTTGGTGAATGCAGA+AGG | + | chr3_1:83572251-83572270 | Msa0381450:CDS | 45.0% |
| GAGTGGTTATCTCACACTCA+TGG | + | chr3_1:83572317-83572336 | Msa0381450:CDS | 45.0% | |
| CATGGTCATCTTGATGAGCA+AGG | + | chr3_1:83572335-83572354 | Msa0381450:CDS | 45.0% | |
| TGGTCATCTTGATGAGCAAG+GGG | + | chr3_1:83572337-83572356 | Msa0381450:CDS | 45.0% | |
| AGCAAGGGGAATTCAACTTC+AGG | + | chr3_1:83572351-83572370 | Msa0381450:CDS | 45.0% | |
| GCAAGGGGAATTCAACTTCA+GGG | + | chr3_1:83572352-83572371 | Msa0381450:CDS | 45.0% | |
| CAAGGGGAATTCAACTTCAG+GGG | + | chr3_1:83572353-83572372 | Msa0381450:CDS | 45.0% | |
| TTCAACTTCAGGGGATTCAG+TGG | + | chr3_1:83572362-83572381 | Msa0381450:CDS | 45.0% | |
| ! | TAGAAGTACATGCCTCAGGG+AGG | - | chr3_1:83569237-83569256 | None:intergenic | 50.0% |
| CCTACGATAGCCAAAGGGAA+CGG | - | chr3_1:83569382-83569401 | None:intergenic | 50.0% | |
| CAACTGAACGCACACAAAGC+TGG | + | chr3_1:83569845-83569864 | Msa0381450:CDS | 50.0% | |
| GAACGCACACAAAGCTGGAA+TGG | + | chr3_1:83569850-83569869 | Msa0381450:CDS | 50.0% | |
| AAGAATGTCAGTGCCTCCAG+GGG | - | chr3_1:83570338-83570357 | None:intergenic | 50.0% | |
| GAAGAATGTCAGTGCCTCCA+GGG | - | chr3_1:83570339-83570358 | None:intergenic | 50.0% | |
| AGAAGAATGTCAGTGCCTCC+AGG | - | chr3_1:83570340-83570359 | None:intergenic | 50.0% | |
| AGCCTAACCTCAAAATCCGG+GGG | - | chr3_1:83570409-83570428 | None:intergenic | 50.0% | |
| ATCTGGACAATGGCACCAAC+GGG | + | chr3_1:83570607-83570626 | Msa0381450:CDS | 50.0% | |
| ACCGCGTGTAATTCCACCAA+TGG | + | chr3_1:83570674-83570693 | Msa0381450:CDS | 50.0% | |
| GCCATTGGTGGAATTACACG+CGG | - | chr3_1:83570678-83570697 | None:intergenic | 50.0% | |
| AGAGAGTCTCTTGCCATTGG+TGG | - | chr3_1:83570690-83570709 | None:intergenic | 50.0% | |
| CCAAGAGAGTCTCTTGCCAT+TGG | - | chr3_1:83570693-83570712 | None:intergenic | 50.0% | |
| CCAATGGCAAGAGACTCTCT+TGG | + | chr3_1:83570690-83570709 | Msa0381450:CDS | 50.0% | |
| CATCCAGGTTTGAGTGCGAT+TGG | - | chr3_1:83570754-83570773 | None:intergenic | 50.0% | |
| CAATCGCACTCAAACCTGGA+TGG | + | chr3_1:83570752-83570771 | Msa0381450:CDS | 50.0% | |
| TTCTCAGTGATCGCCTGAGA+AGG | - | chr3_1:83570780-83570799 | None:intergenic | 50.0% | |
| GTATCTGCTTGGGTCAGGAT+TGG | + | chr3_1:83570825-83570844 | Msa0381450:CDS | 50.0% | |
| !! | AGGATTGGTTCCGGATCACA+TGG | + | chr3_1:83570840-83570859 | Msa0381450:CDS | 50.0% |
| ! | ATTCTGAGGGCCATGTGATC+CGG | - | chr3_1:83570853-83570872 | None:intergenic | 50.0% |
| TCACATGGCCCTCAGAATGT+TGG | + | chr3_1:83570855-83570874 | Msa0381450:CDS | 50.0% | |
| CCATTGGCCGTCAACACTAA+AGG | - | chr3_1:83570886-83570905 | None:intergenic | 50.0% | |
| !! | CCTTTAGTGTTGACGGCCAA+TGG | + | chr3_1:83570883-83570902 | Msa0381450:CDS | 50.0% |
| AGCAGATGGCATGAAATCGG+TGG | + | chr3_1:83570936-83570955 | Msa0381450:CDS | 50.0% | |
| !! | AAGATCAAGGTGCACCGGTT+GGG | + | chr3_1:83571991-83572010 | Msa0381450:CDS | 50.0% |
| GAACAAACAATAGGCCCCAC+AGG | - | chr3_1:83572047-83572066 | None:intergenic | 50.0% | |
| ! | TGTTCGAGGCGATGATTTGG+AGG | + | chr3_1:83572142-83572161 | Msa0381450:CDS | 50.0% |
| GGTTATGTTGCGCGAAGCTA+TGG | + | chr3_1:83572163-83572182 | Msa0381450:CDS | 50.0% | |
| TAAACCGGTTGCTCACTTGC+TGG | + | chr3_1:83572644-83572663 | Msa0381450:three_prime_UTR | 50.0% | |
| ATGACCAGCAAGTGAGCAAC+CGG | - | chr3_1:83572651-83572670 | None:intergenic | 50.0% | |
| CAATGCTGGAAACCTCCCTG+AGG | + | chr3_1:83569222-83569241 | Msa0381450:CDS | 55.0% | |
| CCGTTCCCTTTGGCTATCGT+AGG | + | chr3_1:83569379-83569398 | Msa0381450:intron | 55.0% | |
| TTCAGGCCATCCTCGAACTC+AGG | - | chr3_1:83569733-83569752 | None:intergenic | 55.0% | |
| GTTTATTTGGAAGGCCCCCC+TGG | + | chr3_1:83570319-83570338 | Msa0381450:CDS | 55.0% | |
| AGAATGTCAGTGCCTCCAGG+GGG | - | chr3_1:83570337-83570356 | None:intergenic | 55.0% | |
| !! | TCAAAATCCGGGGGTGTCGA+AGG | - | chr3_1:83570400-83570419 | None:intergenic | 55.0% |
| ! | TTCGACACCCCCGGATTTTG+AGG | + | chr3_1:83570399-83570418 | Msa0381450:CDS | 55.0% |
| !!! | CACCCCCGGATTTTGAGGTT+AGG | + | chr3_1:83570404-83570423 | Msa0381450:intron | 55.0% |
| AACCTGGATGGGTCCTTCTC+AGG | + | chr3_1:83570764-83570783 | Msa0381450:CDS | 55.0% | |
| !! | GCTTGGGTCAGGATTGGTTC+CGG | + | chr3_1:83570831-83570850 | Msa0381450:CDS | 55.0% |
| AACTTGGGTCTGTCCTCCGT+TGG | - | chr3_1:83570910-83570929 | None:intergenic | 55.0% | |
| CCATCTGCTGTCGGCAACTT+GGG | - | chr3_1:83570925-83570944 | None:intergenic | 55.0% | |
| TTCCTGTCGATAGGCAGGCA+AGG | + | chr3_1:83571054-83571073 | Msa0381450:CDS | 55.0% | |
| AACCTTGCCTGCCTATCGAC+AGG | - | chr3_1:83571059-83571078 | None:intergenic | 55.0% | |
| GGGTAGCAGATGGATCTAGC+TGG | - | chr3_1:83571887-83571906 | None:intergenic | 55.0% | |
| ! | CAAGATCAAGGTGCACCGGT+TGG | + | chr3_1:83571990-83572009 | Msa0381450:CDS | 55.0% |
| !! | AGATCAAGGTGCACCGGTTG+GGG | + | chr3_1:83571992-83572011 | Msa0381450:CDS | 55.0% |
| ATGGCACACCCTGCTGTTGA+TGG | + | chr3_1:83572182-83572201 | Msa0381450:CDS | 55.0% | |
| GAGCCGCGACAATGCACATT+TGG | + | chr3_1:83572238-83572257 | Msa0381450:CDS | 55.0% | |
| GCAGCGCAAGCTTGCCTATG+AGG | + | chr3_1:83569900-83569919 | Msa0381450:CDS | 60.0% | |
| TATTTGGAAGGCCCCCCTGG+AGG | + | chr3_1:83570322-83570341 | Msa0381450:CDS | 60.0% | |
| GAATGTCAGTGCCTCCAGGG+GGG | - | chr3_1:83570336-83570355 | None:intergenic | 60.0% | |
| ATCACCACCTTCGACACCCC+CGG | + | chr3_1:83570390-83570409 | Msa0381450:CDS | 60.0% | |
| !! | AAATCCGGGGGTGTCGAAGG+TGG | - | chr3_1:83570397-83570416 | None:intergenic | 60.0% |
| TGGACAATGGCACCAACGGG+TGG | + | chr3_1:83570610-83570629 | Msa0381450:CDS | 60.0% | |
| ACCAACGGGTGGTCTCCTCT+TGG | + | chr3_1:83570621-83570640 | Msa0381450:CDS | 60.0% | |
| ACCAAGAGGAGACCACCCGT+TGG | - | chr3_1:83570625-83570644 | None:intergenic | 60.0% | |
| GGTCCTCATGAACCCCTGAG+TGG | + | chr3_1:83570711-83570730 | Msa0381450:CDS | 60.0% | |
| CGTCCACTCAGGGGTTCATG+AGG | - | chr3_1:83570717-83570736 | None:intergenic | 60.0% | |
| GTTGACGGCCAATGGGCCAA+CGG | + | chr3_1:83570891-83570910 | Msa0381450:CDS | 60.0% | |
| TCTGTCCTCCGTTGGCCCAT+TGG | - | chr3_1:83570902-83570921 | None:intergenic | 60.0% | |
| CCCAAGTTGCCGACAGCAGA+TGG | + | chr3_1:83570922-83570941 | Msa0381450:CDS | 60.0% | |
| GCCATCTGCTGTCGGCAACT+TGG | - | chr3_1:83570926-83570945 | None:intergenic | 60.0% | |
| !! | GATCAAGGTGCACCGGTTGG+GGG | + | chr3_1:83571993-83572012 | Msa0381450:CDS | 60.0% |
| CGCCTGAGAAGGACCCATCC+AGG | - | chr3_1:83570769-83570788 | None:intergenic | 65.0% | |
| !! | GGTGCACCGGTTGGGGGAAT+AGG | + | chr3_1:83571999-83572018 | Msa0381450:CDS | 65.0% |
| GACGGCCAATGGGCCAACGG+AGG | + | chr3_1:83570894-83570913 | Msa0381450:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 83569202 | 83572717 | 83569202 | ID=Msa0381450;Name=Msa0381450 |
| chr3_1 | mRNA | 83569202 | 83572717 | 83569202 | ID=Msa0381450-mRNA-1;Parent=Msa0381450;Name=Msa0381450-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0.5|0.4|1|1|1|5|233|748 |
| chr3_1 | exon | 83569202 | 83569270 | 83569202 | ID=Msa0381450-mRNA-1:exon:21517;Parent=Msa0381450-mRNA-1 |
| chr3_1 | exon | 83569676 | 83570035 | 83569676 | ID=Msa0381450-mRNA-1:exon:21518;Parent=Msa0381450-mRNA-1 |
| chr3_1 | exon | 83570250 | 83570420 | 83570250 | ID=Msa0381450-mRNA-1:exon:21519;Parent=Msa0381450-mRNA-1 |
| chr3_1 | exon | 83570570 | 83571106 | 83570570 | ID=Msa0381450-mRNA-1:exon:21520;Parent=Msa0381450-mRNA-1 |
| chr3_1 | exon | 83571375 | 83572717 | 83571375 | ID=Msa0381450-mRNA-1:exon:21521;Parent=Msa0381450-mRNA-1 |
| chr3_1 | CDS | 83569202 | 83569270 | 83569202 | ID=Msa0381450-mRNA-1:cds;Parent=Msa0381450-mRNA-1 |
| chr3_1 | CDS | 83569676 | 83570035 | 83569676 | ID=Msa0381450-mRNA-1:cds;Parent=Msa0381450-mRNA-1 |
| chr3_1 | CDS | 83570250 | 83570420 | 83570250 | ID=Msa0381450-mRNA-1:cds;Parent=Msa0381450-mRNA-1 |
| chr3_1 | CDS | 83570570 | 83571106 | 83570570 | ID=Msa0381450-mRNA-1:cds;Parent=Msa0381450-mRNA-1 |
| chr3_1 | CDS | 83571375 | 83572484 | 83571375 | ID=Msa0381450-mRNA-1:cds;Parent=Msa0381450-mRNA-1 |
| chr3_1 | three_prime_UTR | 83572485 | 83572717 | 83572485 | ID=Msa0381450-mRNA-1:three_prime_utr;Parent=Msa0381450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
