AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0519940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519940 MtrunA17_Chr3g0135341 96.262 749 18 2 1 748 1 740 0.0 1498
Msa0519940 MtrunA17_Chr1g0151951 79.086 722 148 2 30 748 209 930 0.0 1222
Msa0519940 MtrunA17_Chr1g0151951 30.792 341 211 7 33 361 38 365 3.48e-34 140
Msa0519940 MtrunA17_Chr3g0145541 33.588 524 310 15 249 748 50 559 6.64e-77 258
Msa0519940 MtrunA17_Chr5g0421191 29.926 538 311 17 208 722 43 537 5.89e-64 223
Msa0519940 MtrunA17_Chr1g0207211 28.440 545 338 14 197 722 41 552 1.44e-62 219
Msa0519940 MtrunA17_Chr7g0223191 29.346 535 318 15 208 722 17 511 8.91e-62 216
Msa0519940 MtrunA17_Chr4g0037551 31.906 467 276 14 208 663 46 481 4.91e-61 215
Msa0519940 MtrunA17_Chr1g0207241 29.873 472 296 12 200 661 50 496 2.61e-60 214
Msa0519940 MtrunA17_Chr1g0207201 31.362 389 250 9 282 660 1 382 4.46e-56 199
Msa0519940 MtrunA17_Chr1g0207231 28.319 452 305 11 282 722 1 444 3.88e-54 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0519940 AT1G58370.2 69.577 733 218 4 21 748 210 942 0.0 1095
Msa0519940 AT1G58370.2 28.779 344 213 8 31 361 51 375 1.24e-33 139
Msa0519940 AT1G58370.1 69.577 733 218 4 21 748 182 914 0.0 1095
Msa0519940 AT1G58370.1 28.779 344 213 8 31 361 23 347 1.38e-33 139
Msa0519940 AT4G08160.1 66.310 748 239 6 14 748 2 749 0.0 1041
Msa0519940 AT1G10050.2 61.299 739 277 6 16 748 328 1063 0.0 955
Msa0519940 AT1G10050.2 25.634 355 233 9 35 374 3 341 2.88e-29 125
Msa0519940 AT1G10050.1 61.299 739 277 6 16 748 328 1063 0.0 955
Msa0519940 AT1G10050.1 25.634 355 233 9 35 374 3 341 2.88e-29 125
Msa0519940 AT1G10050.3 61.299 739 277 6 16 748 360 1095 0.0 954
Msa0519940 AT1G10050.3 25.294 340 225 7 35 361 35 358 3.40e-29 125
Msa0519940 AT4G08160.2 67.073 656 203 6 14 656 2 657 0.0 918
Msa0519940 AT4G38650.1 34.328 469 287 10 284 738 91 552 5.79e-74 251
Msa0519940 AT4G33830.1 29.679 529 326 14 208 722 47 543 3.15e-67 233
Msa0519940 AT4G33840.1 28.868 530 330 12 208 722 46 543 7.47e-67 232
Msa0519940 AT4G33860.1 28.947 532 329 13 208 723 46 544 4.35e-61 216
Msa0519940 AT4G38300.1 43.359 256 131 4 381 632 12 257 8.07e-60 204
Msa0519940 AT2G14690.1 31.011 445 277 16 284 707 82 517 2.89e-52 191
Msa0519940 AT4G33810.1 28.747 407 269 12 269 661 33 432 3.09e-51 187
Msa0519940 AT4G33810.5 28.747 407 269 12 269 661 33 432 3.09e-51 187
Msa0519940 AT4G33810.2 28.747 407 269 12 269 661 73 472 4.85e-51 187
Msa0519940 AT4G33810.3 28.747 407 269 12 269 661 73 472 4.85e-51 187
Msa0519940 AT4G33810.4 28.747 407 269 12 269 661 73 472 4.85e-51 187
Msa0519940 AT4G33820.1 29.049 389 259 10 284 661 90 472 7.01e-49 181

Find 186 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTGCTTTAGTTCGGATATT+TGG 0.103053 3_4:-72299075 Msa0519940:CDS
TACATTCAAGGTCCAGTTTC+TGG 0.151513 3_4:-72298001 Msa0519940:CDS
TTCAAAAGTAGTTGTTTATT+TGG 0.166485 3_4:-72298694 Msa0519940:CDS
ATAAGCCAGTTAAGCGATTT+TGG 0.179789 3_4:+72297257 None:intergenic
GCAAAGAACTTCCCGGATTT+TGG 0.200315 3_4:+72299183 None:intergenic
GTGTAATGCTATGGGGCTTT+TGG 0.215964 3_4:-72296796 Msa0519940:CDS
CATGATAATCATTCACAAAT+AGG 0.218933 3_4:+72297095 None:intergenic
ACAGACTAGGTAAGGATATA+AGG 0.260677 3_4:-72297162 Msa0519940:CDS
AGTTTCTGGTGTTGACTTAA+TGG 0.273413 3_4:-72297987 Msa0519940:CDS
CTACTCTTGGTCAACCAATA+TGG 0.285540 3_4:-72296916 Msa0519940:CDS
CTCTTCCAGTCCAATTATTC+AGG 0.294811 3_4:+72299253 None:intergenic
CTGCTTTAGTTCGGATATTT+GGG 0.297447 3_4:-72299074 Msa0519940:CDS
GGTGTTGACTTAATGGTTGC+TGG 0.301216 3_4:-72297980 Msa0519940:CDS
TTCGCGGACATTGTATCTTC+TGG 0.301509 3_4:-72297345 Msa0519940:CDS
TCGAGGATGGCCTGAATAAT+TGG 0.308205 3_4:-72299263 Msa0519940:CDS
AAAAGGGAATTTCAACTATA+AGG 0.329649 3_4:-72297413 Msa0519940:CDS
AGAAATAAAATAATATTTGT+TGG 0.340449 3_4:-72296388 Msa0519940:three_prime_UTR
GGGAAAATCCTTCCAAAATC+CGG 0.368365 3_4:-72299195 Msa0519940:CDS
GCTGTCCAAAATCGCTTAAC+TGG 0.369480 3_4:-72297262 Msa0519940:CDS
CCAGACATTCGTTGTTGATA+AGG 0.370442 3_4:-72296573 Msa0519940:CDS
CAGACATTCGTTGTTGATAA+GGG 0.372479 3_4:-72296572 Msa0519940:CDS
AGCAAGGGGAATTCAACTTC+AGG 0.373704 3_4:-72296649 Msa0519940:CDS
GCCATCTGCTGTCGGCAACT+TGG 0.380256 3_4:+72298077 None:intergenic
GAGCCGCGACAATGCACATT+TGG 0.384503 3_4:-72296762 Msa0519940:CDS
TAATGTAATGAAAAGATTGA+TGG 0.389625 3_4:-72296427 Msa0519940:three_prime_UTR
TATTGGACAGAGCCACAAAA+AGG 0.390280 3_4:-72297430 Msa0519940:CDS
ATTAAGTCAACACCAGAAAC+TGG 0.390421 3_4:+72297989 None:intergenic
TTGAAGGGGAATCATTTAGA+AGG 0.394630 3_4:+72298712 None:intergenic
GTATTGCAGAATGTTGCTTT+TGG 0.399531 3_4:-72298439 Msa0519940:intron
GAAAGCCTAACCTCAAAATC+CGG 0.403044 3_4:+72298591 None:intergenic
GTAATGAGTTGAAGTGGTAT+TGG 0.405250 3_4:-72297447 Msa0519940:CDS
CCTTTAGTGTTGACGGCCAA+TGG 0.409839 3_4:-72298117 Msa0519940:CDS
AGATCAAGGTGCACCGGTTG+GGG 0.410100 3_4:-72297008 Msa0519940:CDS
AAGATCAAGGTGCACCGGTT+GGG 0.410879 3_4:-72297009 Msa0519940:CDS
AGATTGATGGACTGTCATAT+TGG 0.411058 3_4:-72296414 Msa0519940:three_prime_UTR
CTGTTGATGGTGTAATGCTA+TGG 0.411947 3_4:-72296805 Msa0519940:CDS
ATTCTTGATTTGCAAGATCA+AGG 0.412518 3_4:-72297022 Msa0519940:CDS
TGCAGGCAACAGATAAAGAT+TGG 0.414707 3_4:-72298755 Msa0519940:intron
ATGATAATCATTCACAAATA+GGG 0.417257 3_4:+72297096 None:intergenic
ATATGTTCGAGGCGATGATT+TGG 0.420483 3_4:-72296861 Msa0519940:CDS
TCAAGCTCGGTAAACCATAT+TGG 0.421495 3_4:+72296902 None:intergenic
ACCACTCTTCTTTAAGATCA+AGG 0.422719 3_4:+72296699 None:intergenic
TATAATTGAGAACAGCAATC+TGG 0.426399 3_4:-72298410 Msa0519940:CDS
GCTTGGGTCAGGATTGGTTC+CGG 0.428334 3_4:-72298169 Msa0519940:CDS
CTTCAGAAACTTGTATTACA+TGG 0.429240 3_4:-72296514 Msa0519940:three_prime_UTR
GATCTTCGAGAGCAGTATAT+AGG 0.430612 3_4:-72299000 Msa0519940:CDS
CTCGATAAGTTGGCTACTCT+TGG 0.431121 3_4:-72296929 Msa0519940:CDS
TCGCGGACATTGTATCTTCT+GGG 0.432457 3_4:-72297344 Msa0519940:CDS
TAAAGATTGGGCTCAAATGC+AGG 0.434482 3_4:-72298742 Msa0519940:CDS
ATATACTGCTCTCGAAGATC+TGG 0.434721 3_4:+72299003 None:intergenic
TGATAAGGGCGGCTCTTCAT+TGG 0.438724 3_4:-72296558 Msa0519940:CDS
TGCAGATGCAAAGAACTTCC+CGG 0.438822 3_4:+72299176 None:intergenic
AACCTGGATGGGTCCTTCTC+AGG 0.439305 3_4:-72298236 Msa0519940:CDS
TCTGTCCTCCGTTGGCCCAT+TGG 0.442065 3_4:+72298101 None:intergenic
CCATCTGCTGTCGGCAACTT+GGG 0.445406 3_4:+72298078 None:intergenic
GGAAATTGTTACCTTTGAAA+AGG 0.451541 3_4:-72296603 Msa0519940:CDS
ATCAAGTATCTGCTTGGGTC+AGG 0.452969 3_4:-72298180 Msa0519940:CDS
CAACTGAACGCACACAAAGC+TGG 0.453239 3_4:-72299155 Msa0519940:CDS
AAAGTAGTTGTTTATTTGGA+AGG 0.453467 3_4:-72298690 Msa0519940:CDS
CCTTATCAACAACGAATGTC+TGG 0.454734 3_4:+72296573 None:intergenic
GTACATGAGTCCATGGCAAA+TGG 0.457411 3_4:-72299216 Msa0519940:CDS
TAACATATCAAGTATCTGCT+TGG 0.458399 3_4:-72298186 Msa0519940:CDS
TAGTGTGGTATACTGAATAG+TGG 0.459390 3_4:+72299739 None:intergenic
TTCAGGCCATCCTCGAACTC+AGG 0.461619 3_4:+72299270 None:intergenic
TTAAAGTAACATCACGCTTA+CGG 0.463167 3_4:+72297623 None:intergenic
CAGACTAGGTAAGGATATAA+GGG 0.465786 3_4:-72297161 Msa0519940:CDS
ATTCTGAGGGCCATGTGATC+CGG 0.465999 3_4:+72298150 None:intergenic
GTATCTGCTTGGGTCAGGAT+TGG 0.466467 3_4:-72298175 Msa0519940:CDS
AACATATCAAGTATCTGCTT+GGG 0.466505 3_4:-72298185 Msa0519940:CDS
ATGGCACATCCTGCTGTTGA+TGG 0.466570 3_4:-72296818 Msa0519940:CDS
GCCTCGAACATATTCATTAG+TGG 0.466710 3_4:+72296871 None:intergenic
ATCTGGACAATGGCACCAAC+GGG 0.468015 3_4:-72298393 Msa0519940:CDS
TGTTGATGGTGTAATGCTAT+GGG 0.468563 3_4:-72296804 Msa0519940:CDS
TAACCAATCGCACTCAAACC+TGG 0.473942 3_4:-72298252 Msa0519940:CDS
CTTTAGTGTTGACGGCCAAT+GGG 0.475195 3_4:-72298116 Msa0519940:CDS
CTGAATAATTGGACTGGAAG+AGG 0.476567 3_4:-72299252 Msa0519940:CDS
GACAGCAGATGGCATGAAAT+CGG 0.479030 3_4:-72298067 Msa0519940:CDS
TCGAGTGCAGAACAAACAAT+AGG 0.483133 3_4:+72296947 None:intergenic
GAAGGTGAAATCAATGAAGC+TGG 0.483325 3_4:-72296731 Msa0519940:CDS
AGTTATGTTGCGCGAAGCTA+TGG 0.486478 3_4:-72296837 Msa0519940:CDS
AACTTGGGTCTGTCCTCCGT+TGG 0.487407 3_4:+72298093 None:intergenic
TGTACTTTGAGCATCGGAAC+TGG 0.488314 3_4:-72298352 Msa0519940:CDS
GGTATTGCCTTTAGTGTTGA+CGG 0.489124 3_4:-72298124 Msa0519940:CDS
AGAGAGTCTCTTGCCATTGG+TGG 0.492478 3_4:+72298313 None:intergenic
ATGAGGTCACTGCTTTAGTT+CGG 0.493909 3_4:-72299083 Msa0519940:CDS
CATACTAAATCCTGAGTTCG+AGG 0.497515 3_4:-72299280 Msa0519940:CDS
AACTCGGAGATGATCAATGC+TGG 0.498002 3_4:-72299792 Msa0519940:CDS
AGAAGAATGTCAGTGCCTCC+AGG 0.498736 3_4:+72298663 None:intergenic
CGACAGCAATGTTCAACAAT+GGG 0.503377 3_4:-72297317 Msa0519940:CDS
GTATTAGAAGTACATGCCTC+AGG 0.505454 3_4:+72299762 None:intergenic
TTATCAAGACAGACTAGGTA+AGG 0.507118 3_4:-72297170 Msa0519940:CDS
ATTCCCCTTGCTCATCAAGA+TGG 0.507602 3_4:+72296660 None:intergenic
CATCCAGGTTTGAGTGCGAT+TGG 0.509313 3_4:+72298249 None:intergenic
AACCTTGCCTGCCTATCGAC+AGG 0.513887 3_4:+72297944 None:intergenic
TCCACTAATGAATATGTTCG+AGG 0.514151 3_4:-72296872 Msa0519940:CDS
CCATTGGCCGTCAACACTAA+AGG 0.515778 3_4:+72298117 None:intergenic
TACATGAGTCCATGGCAAAT+GGG 0.515874 3_4:-72299215 Msa0519940:CDS
TCCTTGATCTTAAAGAAGAG+TGG 0.516884 3_4:-72296700 Msa0519940:CDS
CAAGATCAAGGTGCACCGGT+TGG 0.520918 3_4:-72297010 Msa0519940:CDS
AAAGCCTAACCTCAAAATCC+GGG 0.520954 3_4:+72298592 None:intergenic
GGTAATTGTACTTTGAGCAT+CGG 0.525699 3_4:-72298358 Msa0519940:CDS
CAAGAATGTAACGTCCACTC+AGG 0.526881 3_4:+72298275 None:intergenic
GGAATTCAGCAAGAAATCAC+TGG 0.527804 3_4:-72299129 Msa0519940:CDS
ACCAACGGGTGGTCTCCTCT+TGG 0.529762 3_4:-72298379 Msa0519940:CDS
CTATTGATGCACGATCCAAT+TGG 0.531809 3_4:+72297535 None:intergenic
AACTAAAGCAGTGACCTCAT+AGG 0.532142 3_4:+72299086 None:intergenic
CGCCTGAGAAGGACCCATCC+AGG 0.534151 3_4:+72298234 None:intergenic
GCAGCGCAAGCTTGCCTATG+AGG 0.535069 3_4:-72299100 Msa0519940:CDS
ATCACCACCTTCGACACCCC+CGG 0.535089 3_4:-72298610 Msa0519940:CDS
GAACGCACACAAAGCTGGAA+TGG 0.536071 3_4:-72299150 Msa0519940:CDS
AATGATTATCATGTTGAAGA+TGG 0.536653 3_4:-72297085 Msa0519940:CDS
GGAAAATCCTTCCAAAATCC+GGG 0.538434 3_4:-72299194 Msa0519940:CDS
TTGTTCTGCACTCGATAAGT+TGG 0.539626 3_4:-72296939 Msa0519940:CDS
CCCAAGTTGCCGACAGCAGA+TGG 0.542895 3_4:-72298078 Msa0519940:CDS
GCAAGGGGAATTCAACTTCA+GGG 0.545056 3_4:-72296648 Msa0519940:CDS
CCAAGAGAGTCTCTTGCCAT+TGG 0.545489 3_4:+72298310 None:intergenic
CAATCGCACTCAAACCTGGA+TGG 0.554026 3_4:-72298248 Msa0519940:CDS
ATGAGATGGAGATACTAACT+TGG 0.555489 3_4:+72298972 None:intergenic
GCAGGCAACAGATAAAGATT+GGG 0.558763 3_4:-72298754 Msa0519940:intron
ATGGCCATCTTGATGAGCAA+GGG 0.560153 3_4:-72296664 Msa0519940:CDS
AATCTGGACAATGGCACCAA+CGG 0.563221 3_4:-72298394 Msa0519940:CDS
GGTCACATTGATAGTCCTGT+GGG 0.563973 3_4:-72296971 Msa0519940:CDS
TTCTCAGTGATCGCCTGAGA+AGG 0.568117 3_4:+72298223 None:intergenic
TTCAACTTCAGGGGATTCAG+TGG 0.569777 3_4:-72296638 Msa0519940:CDS
CTAAATCCTGAGTTCGAGGA+TGG 0.569968 3_4:-72299276 Msa0519940:CDS
GGCTTATTGTCTCGCTACAA+AGG 0.570792 3_4:-72297241 Msa0519940:CDS
GATGGCCTGAATAATTGGAC+TGG 0.575465 3_4:-72299258 Msa0519940:CDS
AGGATTGGTTCCGGATCACA+TGG 0.576001 3_4:-72298160 Msa0519940:CDS
GATTGCAGTACATGAGTCCA+TGG 0.578636 3_4:-72299223 Msa0519940:CDS
AAGGCAATACCAACATTCTG+AGG 0.578941 3_4:+72298136 None:intergenic
CATGGCCATCTTGATGAGCA+AGG 0.580614 3_4:-72296665 Msa0519940:CDS
AAGAATGTAACGTCCACTCA+GGG 0.582309 3_4:+72298276 None:intergenic
TCACATGGCCCTCAGAATGT+TGG 0.584688 3_4:-72298145 Msa0519940:CDS
AATCGCACTCAAACCTGGAT+GGG 0.586825 3_4:-72298247 Msa0519940:CDS
AAGAATGTCAGTGCCTCCAG+GGG 0.587074 3_4:+72298665 None:intergenic
TTCACAAATAGGGTAGCAGA+TGG 0.588059 3_4:+72297106 None:intergenic
ACCGCGTGTAATTCCACCAA+TGG 0.588150 3_4:-72298326 Msa0519940:CDS
AGTGTGGTATACTGAATAGT+GGG 0.591386 3_4:+72299740 None:intergenic
AGCATTACACCATCAACAGC+AGG 0.593920 3_4:+72296809 None:intergenic
GTTGACGGCCAATGGGCCAA+CGG 0.594155 3_4:-72298109 Msa0519940:CDS
TTGAGAAACTATGGAAAACT+CGG 0.594826 3_4:-72299808 None:intergenic
TCGACAGCAATGTTCAACAA+TGG 0.595009 3_4:-72297318 Msa0519940:CDS
AAAGATTGGGCTCAAATGCA+GGG 0.597935 3_4:-72298741 Msa0519940:CDS
TTCCTGTCGATAGGCAGGCA+AGG 0.599356 3_4:-72297946 Msa0519940:CDS
GAACAAACAATAGGCCCCAC+AGG 0.602172 3_4:+72296956 None:intergenic
GGGTAGCAGATGGATCTAGC+TGG 0.605427 3_4:+72297116 None:intergenic
CAAGGGGAATTCAACTTCAG+GGG 0.608694 3_4:-72296647 Msa0519940:CDS
TTTGCAAGATCAAGGTGCAC+CGG 0.608977 3_4:-72297014 Msa0519940:CDS
TCACCAAATGTGCATTGTCG+CGG 0.609213 3_4:+72296759 None:intergenic
CCAATGGCAAGAGACTCTCT+TGG 0.609407 3_4:-72298310 Msa0519940:CDS
AAGTACAAGATAGACATTCG+CGG 0.610751 3_4:-72297361 Msa0519940:CDS
GAGTGGTTATCTCACACTCA+TGG 0.613588 3_4:-72296683 Msa0519940:CDS
AGGTCACATTGATAGTCCTG+TGG 0.614882 3_4:-72296972 Msa0519940:CDS
GAAGAATGTCAGTGCCTCCA+GGG 0.615547 3_4:+72298664 None:intergenic
CGTCCACTCAGGGGTTCATG+AGG 0.617450 3_4:+72298286 None:intergenic
AAGGTGAAATCAATGAAGCT+GGG 0.619301 3_4:-72296730 Msa0519940:CDS
GTTAACAATGAAATGTTGCA+TGG 0.621327 3_4:-72297199 Msa0519940:CDS
TATTAGAAGTACATGCCTCA+GGG 0.623116 3_4:+72299763 None:intergenic
GATTTCATGCCATCTGCTGT+CGG 0.625782 3_4:+72298069 None:intergenic
TGGCCATCTTGATGAGCAAG+GGG 0.625929 3_4:-72296663 Msa0519940:CDS
ATTCAGTGGTTTGTACAATG+TGG 0.629627 3_4:-72296624 Msa0519940:CDS
AGTGGAAGACACATCAAGCT+CGG 0.630111 3_4:+72296889 None:intergenic
TATTTGTTTAACTTTCACAA+AGG 0.638165 3_4:+72297570 None:intergenic
TGGACAATGGCACCAACGGG+TGG 0.640136 3_4:-72298390 Msa0519940:CDS
ACATTCGTTGTTGATAAGGG+CGG 0.640206 3_4:-72296569 Msa0519940:CDS
GACGGCCAATGGGCCAACGG+AGG 0.644893 3_4:-72298106 Msa0519940:CDS
GCACATTTGGTGAATGCAGA+AGG 0.645010 3_4:-72296749 Msa0519940:CDS
TATTTGGTAATGAGTTGAAG+TGG 0.647331 3_4:-72297453 Msa0519940:CDS
AAGCCTAACCTCAAAATCCG+GGG 0.648361 3_4:+72298593 None:intergenic
AGGCAATACCAACATTCTGA+GGG 0.648383 3_4:+72298137 None:intergenic
GGTCCTCATGAACCCCTGAG+TGG 0.651275 3_4:-72298289 Msa0519940:CDS
GAGAACAGCAATCTGGACAA+TGG 0.655529 3_4:-72298403 Msa0519940:CDS
GATCAAGGTGCACCGGTTGG+GGG 0.658598 3_4:-72297007 Msa0519940:CDS
CTCAAAGTACAATTACCAAG+AGG 0.666083 3_4:+72298364 None:intergenic
GCCATTGGTGGAATTACACG+CGG 0.667698 3_4:+72298325 None:intergenic
GTTGATGGTGTAATGCTATG+GGG 0.671191 3_4:-72296803 Msa0519940:CDS
AGCAGATGGCATGAAATCGG+TGG 0.673951 3_4:-72298064 Msa0519940:CDS
AGCCTAACCTCAAAATCCGG+GGG 0.687022 3_4:+72298594 None:intergenic
ACCAAGAGGAGACCACCCGT+TGG 0.691945 3_4:+72298378 None:intergenic
AGAATGTCAGTGCCTCCAGG+GGG 0.711793 3_4:+72298666 None:intergenic
TAGAAGTACATGCCTCAGGG+AGG 0.715770 3_4:+72299766 None:intergenic
GAATGTCAGTGCCTCCAGGG+GGG 0.716647 3_4:+72298667 None:intergenic
AGAATGTAACGTCCACTCAG+GGG 0.726251 3_4:+72298277 None:intergenic
CAATGCTGGAAACCTCCCTG+AGG 0.737374 3_4:-72299778 Msa0519940:CDS
TTTATGCGAGCAGACAGACA+AGG 0.748258 3_4:-72297915 Msa0519940:intron
GTCACATTGATAGTCCTGTG+GGG 0.751087 3_4:-72296970 Msa0519940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAATAAAATAATATTTGT+TGG - chr3_4:72299788-72299807 Msa0519940:CDS 10.0%
!!! GTTAAATATCTCTTATTTTT+TGG - chr3_4:72298430-72298449 Msa0519940:CDS 15.0%
!!! ATGTTACTTTAAAATTTTCT+GGG - chr3_4:72298564-72298583 Msa0519940:intron 15.0%
!!! GGTACATAATTATTTCATTT+TGG + chr3_4:72296512-72296531 None:intergenic 20.0%
!! TAGAATATTTACAATCACTT+CGG + chr3_4:72296675-72296694 None:intergenic 20.0%
!!! TTTGTTTTCTTCTGAAATAA+GGG + chr3_4:72296843-72296862 None:intergenic 20.0%
!!! AATAAACAACTACTTTTGAA+GGG + chr3_4:72297482-72297501 None:intergenic 20.0%
!!! AAATAAACAACTACTTTTGA+AGG + chr3_4:72297483-72297502 None:intergenic 20.0%
!! TTCAAAAGTAGTTGTTTATT+TGG - chr3_4:72297482-72297501 Msa0519940:CDS 20.0%
!! ATGTAAACAAAAACATTAGA+TGG + chr3_4:72298160-72298179 None:intergenic 20.0%
!!! AATGTTTTTGTTTACATTCA+AGG - chr3_4:72298163-72298182 Msa0519940:CDS 20.0%
!!! ACGAATTATTGAATTTTCAT+TGG - chr3_4:72298301-72298320 Msa0519940:CDS 20.0%
!!! GATGTTACTTTAAAATTTTC+TGG - chr3_4:72298563-72298582 Msa0519940:intron 20.0%
!!! TATTTGTTTAACTTTCACAA+AGG + chr3_4:72298609-72298628 None:intergenic 20.0%
!! GAATAAAAATGATTTACTGA+CGG - chr3_4:72298892-72298911 Msa0519940:intron 20.0%
!! ATGATAATCATTCACAAATA+GGG + chr3_4:72299083-72299102 None:intergenic 20.0%
!! TAATGTAATGAAAAGATTGA+TGG - chr3_4:72299749-72299768 Msa0519940:intron 20.0%
! TAAACATATGAAAAGTAGTG+TGG + chr3_4:72296455-72296474 None:intergenic 25.0%
!!! ATGTGTTTGATTTGTTAACA+AGG - chr3_4:72296474-72296493 Msa0519940:three_prime_UTR 25.0%
!!! TGTGTTTGATTTGTTAACAA+GGG - chr3_4:72296475-72296494 Msa0519940:three_prime_UTR 25.0%
!!! TTGTTTTCTTCTGAAATAAG+GGG + chr3_4:72296842-72296861 None:intergenic 25.0%
!!! GTTTGTTTTCTTCTGAAATA+AGG + chr3_4:72296844-72296863 None:intergenic 25.0%
! AGGTAAAGAAATAAATGAGA+TGG + chr3_4:72297221-72297240 None:intergenic 25.0%
! CATGTCATTATTCTATGTAT+AGG + chr3_4:72297241-72297260 None:intergenic 25.0%
! CATATCTTTAAATTGCTGAA+CGG - chr3_4:72297379-72297398 Msa0519940:CDS 25.0%
!!! ATAAACAACTACTTTTGAAG+GGG + chr3_4:72297481-72297500 None:intergenic 25.0%
! AAAGTAGTTGTTTATTTGGA+AGG - chr3_4:72297486-72297505 Msa0519940:CDS 25.0%
! AAAAGGGAATTTCAACTATA+AGG - chr3_4:72298763-72298782 Msa0519940:intron 25.0%
! CATGATAATCATTCACAAAT+AGG + chr3_4:72299084-72299103 None:intergenic 25.0%
! AATGATTATCATGTTGAAGA+TGG - chr3_4:72299091-72299110 Msa0519940:CDS 25.0%
TCATGAAACAAAGAGAGAAA+TGG + chr3_4:72296779-72296798 None:intergenic 30.0%
!!! TGTTTTCTTCTGAAATAAGG+GGG + chr3_4:72296841-72296860 None:intergenic 30.0%
TATAATTGAGAACAGCAATC+TGG - chr3_4:72297766-72297785 Msa0519940:intron 30.0%
TAACATATCAAGTATCTGCT+TGG - chr3_4:72297990-72298009 Msa0519940:CDS 30.0%
AACATATCAAGTATCTGCTT+GGG - chr3_4:72297991-72298010 Msa0519940:CDS 30.0%
! TTCAAATTTTTCCTGTCGAT+AGG - chr3_4:72298221-72298240 Msa0519940:CDS 30.0%
! ATTGAATTTTCATTGGACGT+TGG - chr3_4:72298308-72298327 Msa0519940:CDS 30.0%
TTAAAGTAACATCACGCTTA+CGG + chr3_4:72298556-72298575 None:intergenic 30.0%
!!! TACTTTAAAATTTTCTGGGC+TGG - chr3_4:72298568-72298587 Msa0519940:intron 30.0%
! ATACAGAACGATTTTCCAAT+TGG - chr3_4:72298626-72298645 Msa0519940:CDS 30.0%
!! TCTTTGTGCAACATTTTAAC+TGG - chr3_4:72298696-72298715 Msa0519940:CDS 30.0%
!!! CTTTGTGCAACATTTTAACT+GGG - chr3_4:72298697-72298716 Msa0519940:CDS 30.0%
!! TATTTGGTAATGAGTTGAAG+TGG - chr3_4:72298723-72298742 Msa0519940:CDS 30.0%
! TAGTTGAAATTCCCTTTTTG+TGG + chr3_4:72298761-72298780 None:intergenic 30.0%
GTTAACAATGAAATGTTGCA+TGG - chr3_4:72298977-72298996 Msa0519940:intron 30.0%
! TCATTTTATCAAGACAGACT+AGG - chr3_4:72299001-72299020 Msa0519940:CDS 30.0%
! ATCTGTTGTGTGTATTTTTC+TGG + chr3_4:72299136-72299155 None:intergenic 30.0%
!! ATTCTTGATTTGCAAGATCA+AGG - chr3_4:72299154-72299173 Msa0519940:CDS 30.0%
! GGAAATTGTTACCTTTGAAA+AGG - chr3_4:72299573-72299592 Msa0519940:intron 30.0%
CTTCAGAAACTTGTATTACA+TGG - chr3_4:72299662-72299681 Msa0519940:intron 30.0%
! TATTAGAAGTACATGCCTCA+GGG + chr3_4:72296416-72296435 None:intergenic 35.0%
AGTGTGGTATACTGAATAGT+GGG + chr3_4:72296439-72296458 None:intergenic 35.0%
TAGTGTGGTATACTGAATAG+TGG + chr3_4:72296440-72296459 None:intergenic 35.0%
TAACAAAACGCAAACACGAA+TGG + chr3_4:72296533-72296552 None:intergenic 35.0%
!! AGAGCATTGGATTTGATTGT+AGG - chr3_4:72296582-72296601 Msa0519940:CDS 35.0%
! CAAACTCATAACTTGTGTAG+TGG - chr3_4:72296729-72296748 Msa0519940:CDS 35.0%
! TATGATGTTTTCATCGTCAG+TGG + chr3_4:72296880-72296899 None:intergenic 35.0%
! ACTGCTTTAGTTCGGATATT+TGG - chr3_4:72297101-72297120 Msa0519940:CDS 35.0%
! CTGCTTTAGTTCGGATATTT+GGG - chr3_4:72297102-72297121 Msa0519940:CDS 35.0%
ATGAGATGGAGATACTAACT+TGG + chr3_4:72297207-72297226 None:intergenic 35.0%
TTGAAGGGGAATCATTTAGA+AGG + chr3_4:72297467-72297486 None:intergenic 35.0%
!!! GTATTGCAGAATGTTGCTTT+TGG - chr3_4:72297737-72297756 Msa0519940:intron 35.0%
CTCAAAGTACAATTACCAAG+AGG + chr3_4:72297815-72297834 None:intergenic 35.0%
GGTAATTGTACTTTGAGCAT+CGG - chr3_4:72297818-72297837 Msa0519940:intron 35.0%
ATTAAGTCAACACCAGAAAC+TGG + chr3_4:72298190-72298209 None:intergenic 35.0%
!! AGTTTCTGGTGTTGACTTAA+TGG - chr3_4:72298189-72298208 Msa0519940:CDS 35.0%
!!! CATTTTAACTGGGCTGTATT+TGG - chr3_4:72298707-72298726 Msa0519940:CDS 35.0%
! GTAATGAGTTGAAGTGGTAT+TGG - chr3_4:72298729-72298748 Msa0519940:CDS 35.0%
AAGTACAAGATAGACATTCG+CGG - chr3_4:72298815-72298834 Msa0519940:intron 35.0%
! ATAAGCCAGTTAAGCGATTT+TGG + chr3_4:72298922-72298941 None:intergenic 35.0%
TTATCAAGACAGACTAGGTA+AGG - chr3_4:72299006-72299025 Msa0519940:CDS 35.0%
ACAGACTAGGTAAGGATATA+AGG - chr3_4:72299014-72299033 Msa0519940:CDS 35.0%
CAGACTAGGTAAGGATATAA+GGG - chr3_4:72299015-72299034 Msa0519940:CDS 35.0%
TCCACTAATGAATATGTTCG+AGG - chr3_4:72299304-72299323 Msa0519940:CDS 35.0%
!! TGTTGATGGTGTAATGCTAT+GGG - chr3_4:72299372-72299391 Msa0519940:intron 35.0%
AAGGTGAAATCAATGAAGCT+GGG - chr3_4:72299446-72299465 Msa0519940:intron 35.0%
TCCTTGATCTTAAAGAAGAG+TGG - chr3_4:72299476-72299495 Msa0519940:intron 35.0%
!! ACCACTCTTCTTTAAGATCA+AGG + chr3_4:72299480-72299499 None:intergenic 35.0%
! ATTCAGTGGTTTGTACAATG+TGG - chr3_4:72299552-72299571 Msa0519940:intron 35.0%
! CTGGCAAATTACCTTTTCAA+AGG + chr3_4:72299587-72299606 None:intergenic 35.0%
! CAGACATTCGTTGTTGATAA+GGG - chr3_4:72299604-72299623 Msa0519940:intron 35.0%
!! AGATTGATGGACTGTCATAT+TGG - chr3_4:72299762-72299781 Msa0519940:CDS 35.0%
! GTATTAGAAGTACATGCCTC+AGG + chr3_4:72296417-72296436 None:intergenic 40.0%
! TTTTGTTAAGCCGTTCCCTT+TGG - chr3_4:72296545-72296564 Msa0519940:CDS 40.0%
TATGTCCTACGATAGCCAAA+GGG + chr3_4:72296563-72296582 None:intergenic 40.0%
TATCGTAGGACATAGAGCAT+TGG - chr3_4:72296569-72296588 Msa0519940:CDS 40.0%
CATACTAAATCCTGAGTTCG+AGG - chr3_4:72296896-72296915 Msa0519940:CDS 40.0%
CTCTTCCAGTCCAATTATTC+AGG + chr3_4:72296926-72296945 None:intergenic 40.0%
! CTGAATAATTGGACTGGAAG+AGG - chr3_4:72296924-72296943 Msa0519940:CDS 40.0%
TACATGAGTCCATGGCAAAT+GGG - chr3_4:72296961-72296980 Msa0519940:CDS 40.0%
! AAGGATTTTCCCATTTGCCA+TGG + chr3_4:72296973-72296992 None:intergenic 40.0%
GGGAAAATCCTTCCAAAATC+CGG - chr3_4:72296981-72297000 Msa0519940:CDS 40.0%
GGAAAATCCTTCCAAAATCC+GGG - chr3_4:72296982-72297001 Msa0519940:CDS 40.0%
GGAATTCAGCAAGAAATCAC+TGG - chr3_4:72297047-72297066 Msa0519940:CDS 40.0%
AACTAAAGCAGTGACCTCAT+AGG + chr3_4:72297093-72297112 None:intergenic 40.0%
ATGAGGTCACTGCTTTAGTT+CGG - chr3_4:72297093-72297112 Msa0519940:CDS 40.0%
ATATACTGCTCTCGAAGATC+TGG + chr3_4:72297176-72297195 None:intergenic 40.0%
GATCTTCGAGAGCAGTATAT+AGG - chr3_4:72297176-72297195 Msa0519940:CDS 40.0%
GAATAATGACATGACTGCTG+TGG - chr3_4:72297248-72297267 Msa0519940:CDS 40.0%
!! GACTGCTGTGGTTATTTTCT+TGG - chr3_4:72297260-72297279 Msa0519940:CDS 40.0%
TTTGCGATACTAAAGTGTGC+AGG - chr3_4:72297404-72297423 Msa0519940:CDS 40.0%
TGCAGGCAACAGATAAAGAT+TGG - chr3_4:72297421-72297440 Msa0519940:CDS 40.0%
GCAGGCAACAGATAAAGATT+GGG - chr3_4:72297422-72297441 Msa0519940:CDS 40.0%
TAAAGATTGGGCTCAAATGC+AGG - chr3_4:72297434-72297453 Msa0519940:CDS 40.0%
AAAGATTGGGCTCAAATGCA+GGG - chr3_4:72297435-72297454 Msa0519940:CDS 40.0%
AAAGCCTAACCTCAAAATCC+GGG + chr3_4:72297587-72297606 None:intergenic 40.0%
GAAAGCCTAACCTCAAAATC+CGG + chr3_4:72297588-72297607 None:intergenic 40.0%
!! CTATGATGCCTTTTGTTGTG+TGG - chr3_4:72297677-72297696 Msa0519940:intron 40.0%
AGAATCGACCACACAACAAA+AGG + chr3_4:72297688-72297707 None:intergenic 40.0%
AAGAATGTAACGTCCACTCA+GGG + chr3_4:72297903-72297922 None:intergenic 40.0%
AGGCAATACCAACATTCTGA+GGG + chr3_4:72298042-72298061 None:intergenic 40.0%
AAGGCAATACCAACATTCTG+AGG + chr3_4:72298043-72298062 None:intergenic 40.0%
! GGTATTGCCTTTAGTGTTGA+CGG - chr3_4:72298052-72298071 Msa0519940:CDS 40.0%
TACATTCAAGGTCCAGTTTC+TGG - chr3_4:72298175-72298194 Msa0519940:CDS 40.0%
! AATTTTTCCTGTCGATAGGC+AGG - chr3_4:72298225-72298244 Msa0519940:CDS 40.0%
CTATTGATGCACGATCCAAT+TGG + chr3_4:72298644-72298663 None:intergenic 40.0%
TATTGGACAGAGCCACAAAA+AGG - chr3_4:72298746-72298765 Msa0519940:CDS 40.0%
ATTGGACAGAGCCACAAAAA+GGG - chr3_4:72298747-72298766 Msa0519940:CDS 40.0%
TCGACAGCAATGTTCAACAA+TGG - chr3_4:72298858-72298877 Msa0519940:intron 40.0%
CGACAGCAATGTTCAACAAT+GGG - chr3_4:72298859-72298878 Msa0519940:intron 40.0%
TTCACAAATAGGGTAGCAGA+TGG + chr3_4:72299073-72299092 None:intergenic 40.0%
TCGAGTGCAGAACAAACAAT+AGG + chr3_4:72299232-72299251 None:intergenic 40.0%
TTGTTCTGCACTCGATAAGT+TGG - chr3_4:72299237-72299256 Msa0519940:CDS 40.0%
CTACTCTTGGTCAACCAATA+TGG - chr3_4:72299260-72299279 Msa0519940:CDS 40.0%
TCAAGCTCGGTAAACCATAT+TGG + chr3_4:72299277-72299296 None:intergenic 40.0%
GCCTCGAACATATTCATTAG+TGG + chr3_4:72299308-72299327 None:intergenic 40.0%
ATATGTTCGAGGCGATGATT+TGG - chr3_4:72299315-72299334 Msa0519940:CDS 40.0%
!! CTGTTGATGGTGTAATGCTA+TGG - chr3_4:72299371-72299390 Msa0519940:intron 40.0%
!! GTTGATGGTGTAATGCTATG+GGG - chr3_4:72299373-72299392 Msa0519940:intron 40.0%
! TGTAATGCTATGGGGCTTTT+GGG - chr3_4:72299381-72299400 Msa0519940:intron 40.0%
GAAGGTGAAATCAATGAAGC+TGG - chr3_4:72299445-72299464 Msa0519940:intron 40.0%
CCTTATCAACAACGAATGTC+TGG + chr3_4:72299606-72299625 None:intergenic 40.0%
CCAGACATTCGTTGTTGATA+AGG - chr3_4:72299603-72299622 Msa0519940:intron 40.0%
! ACATTCGTTGTTGATAAGGG+CGG - chr3_4:72299607-72299626 Msa0519940:intron 40.0%
AACTCGGAGATGATCAATGC+TGG - chr3_4:72296384-72296403 Msa0519940:three_prime_UTR 45.0%
CTATGTCCTACGATAGCCAA+AGG + chr3_4:72296564-72296583 None:intergenic 45.0%
CTAAATCCTGAGTTCGAGGA+TGG - chr3_4:72296900-72296919 Msa0519940:CDS 45.0%
TCGAGGATGGCCTGAATAAT+TGG - chr3_4:72296913-72296932 Msa0519940:CDS 45.0%
GATGGCCTGAATAATTGGAC+TGG - chr3_4:72296918-72296937 Msa0519940:CDS 45.0%
GATTGCAGTACATGAGTCCA+TGG - chr3_4:72296953-72296972 Msa0519940:CDS 45.0%
GTACATGAGTCCATGGCAAA+TGG - chr3_4:72296960-72296979 Msa0519940:CDS 45.0%
! AGAACTTCCCGGATTTTGGA+AGG + chr3_4:72296992-72297011 None:intergenic 45.0%
! GCAAAGAACTTCCCGGATTT+TGG + chr3_4:72296996-72297015 None:intergenic 45.0%
TGCAGATGCAAAGAACTTCC+CGG + chr3_4:72297003-72297022 None:intergenic 45.0%
AAGCCTAACCTCAAAATCCG+GGG + chr3_4:72297586-72297605 None:intergenic 45.0%
GAGAACAGCAATCTGGACAA+TGG - chr3_4:72297773-72297792 Msa0519940:intron 45.0%
AATCTGGACAATGGCACCAA+CGG - chr3_4:72297782-72297801 Msa0519940:intron 45.0%
!! TGTACTTTGAGCATCGGAAC+TGG - chr3_4:72297824-72297843 Msa0519940:intron 45.0%
AGAATGTAACGTCCACTCAG+GGG + chr3_4:72297902-72297921 None:intergenic 45.0%
CAAGAATGTAACGTCCACTC+AGG + chr3_4:72297904-72297923 None:intergenic 45.0%
TAACCAATCGCACTCAAACC+TGG - chr3_4:72297924-72297943 Msa0519940:CDS 45.0%
AATCGCACTCAAACCTGGAT+GGG - chr3_4:72297929-72297948 Msa0519940:CDS 45.0%
ATCAAGTATCTGCTTGGGTC+AGG - chr3_4:72297996-72298015 Msa0519940:CDS 45.0%
!! CTTTAGTGTTGACGGCCAAT+GGG - chr3_4:72298060-72298079 Msa0519940:CDS 45.0%
GATTTCATGCCATCTGCTGT+CGG + chr3_4:72298110-72298129 None:intergenic 45.0%
GACAGCAGATGGCATGAAAT+CGG - chr3_4:72298109-72298128 Msa0519940:CDS 45.0%
!! GGTGTTGACTTAATGGTTGC+TGG - chr3_4:72298196-72298215 Msa0519940:CDS 45.0%
TTTATGCGAGCAGACAGACA+AGG - chr3_4:72298261-72298280 Msa0519940:CDS 45.0%
TTCGCGGACATTGTATCTTC+TGG - chr3_4:72298831-72298850 Msa0519940:intron 45.0%
TCGCGGACATTGTATCTTCT+GGG - chr3_4:72298832-72298851 Msa0519940:intron 45.0%
GCTGTCCAAAATCGCTTAAC+TGG - chr3_4:72298914-72298933 Msa0519940:intron 45.0%
GGCTTATTGTCTCGCTACAA+AGG - chr3_4:72298935-72298954 Msa0519940:intron 45.0%
TTTGCAAGATCAAGGTGCAC+CGG - chr3_4:72299162-72299181 Msa0519940:CDS 45.0%
TGAATTCCTATTCCCCCAAC+CGG + chr3_4:72299184-72299203 None:intergenic 45.0%
GTTGGGGGAATAGGAATTCA+AGG - chr3_4:72299184-72299203 Msa0519940:CDS 45.0%
! AGGTCACATTGATAGTCCTG+TGG - chr3_4:72299204-72299223 Msa0519940:CDS 45.0%
! GGTCACATTGATAGTCCTGT+GGG - chr3_4:72299205-72299224 Msa0519940:CDS 45.0%
! GTCACATTGATAGTCCTGTG+GGG - chr3_4:72299206-72299225 Msa0519940:CDS 45.0%
! CTCGATAAGTTGGCTACTCT+TGG - chr3_4:72299247-72299266 Msa0519940:CDS 45.0%
AGTGGAAGACACATCAAGCT+CGG + chr3_4:72299290-72299309 None:intergenic 45.0%
AGTTATGTTGCGCGAAGCTA+TGG - chr3_4:72299339-72299358 Msa0519940:intron 45.0%
AGCATTACACCATCAACAGC+AGG + chr3_4:72299370-72299389 None:intergenic 45.0%
! GTGTAATGCTATGGGGCTTT+TGG - chr3_4:72299380-72299399 Msa0519940:intron 45.0%
TCACCAAATGTGCATTGTCG+CGG + chr3_4:72299420-72299439 None:intergenic 45.0%
! GCACATTTGGTGAATGCAGA+AGG - chr3_4:72299427-72299446 Msa0519940:intron 45.0%
GAGTGGTTATCTCACACTCA+TGG - chr3_4:72299493-72299512 Msa0519940:intron 45.0%
ATGGCCATCTTGATGAGCAA+GGG - chr3_4:72299512-72299531 Msa0519940:intron 45.0%
ATTCCCCTTGCTCATCAAGA+TGG + chr3_4:72299519-72299538 None:intergenic 45.0%
AGCAAGGGGAATTCAACTTC+AGG - chr3_4:72299527-72299546 Msa0519940:intron 45.0%
GCAAGGGGAATTCAACTTCA+GGG - chr3_4:72299528-72299547 Msa0519940:intron 45.0%
CAAGGGGAATTCAACTTCAG+GGG - chr3_4:72299529-72299548 Msa0519940:intron 45.0%
TTCAACTTCAGGGGATTCAG+TGG - chr3_4:72299538-72299557 Msa0519940:intron 45.0%
! TAGAAGTACATGCCTCAGGG+AGG + chr3_4:72296413-72296432 None:intergenic 50.0%
CCTACGATAGCCAAAGGGAA+CGG + chr3_4:72296558-72296577 None:intergenic 50.0%
CAACTGAACGCACACAAAGC+TGG - chr3_4:72297021-72297040 Msa0519940:CDS 50.0%
GAACGCACACAAAGCTGGAA+TGG - chr3_4:72297026-72297045 Msa0519940:CDS 50.0%
AAGAATGTCAGTGCCTCCAG+GGG + chr3_4:72297514-72297533 None:intergenic 50.0%
GAAGAATGTCAGTGCCTCCA+GGG + chr3_4:72297515-72297534 None:intergenic 50.0%
AGAAGAATGTCAGTGCCTCC+AGG + chr3_4:72297516-72297535 None:intergenic 50.0%
AGCCTAACCTCAAAATCCGG+GGG + chr3_4:72297585-72297604 None:intergenic 50.0%
ATCTGGACAATGGCACCAAC+GGG - chr3_4:72297783-72297802 Msa0519940:intron 50.0%
ACCGCGTGTAATTCCACCAA+TGG - chr3_4:72297850-72297869 Msa0519940:intron 50.0%
GCCATTGGTGGAATTACACG+CGG + chr3_4:72297854-72297873 None:intergenic 50.0%
AGAGAGTCTCTTGCCATTGG+TGG + chr3_4:72297866-72297885 None:intergenic 50.0%
CCAAGAGAGTCTCTTGCCAT+TGG + chr3_4:72297869-72297888 None:intergenic 50.0%
CCAATGGCAAGAGACTCTCT+TGG - chr3_4:72297866-72297885 Msa0519940:intron 50.0%
CATCCAGGTTTGAGTGCGAT+TGG + chr3_4:72297930-72297949 None:intergenic 50.0%
CAATCGCACTCAAACCTGGA+TGG - chr3_4:72297928-72297947 Msa0519940:CDS 50.0%
TTCTCAGTGATCGCCTGAGA+AGG + chr3_4:72297956-72297975 None:intergenic 50.0%
GTATCTGCTTGGGTCAGGAT+TGG - chr3_4:72298001-72298020 Msa0519940:CDS 50.0%
!! AGGATTGGTTCCGGATCACA+TGG - chr3_4:72298016-72298035 Msa0519940:CDS 50.0%
! ATTCTGAGGGCCATGTGATC+CGG + chr3_4:72298029-72298048 None:intergenic 50.0%
TCACATGGCCCTCAGAATGT+TGG - chr3_4:72298031-72298050 Msa0519940:CDS 50.0%
CCATTGGCCGTCAACACTAA+AGG + chr3_4:72298062-72298081 None:intergenic 50.0%
!! CCTTTAGTGTTGACGGCCAA+TGG - chr3_4:72298059-72298078 Msa0519940:CDS 50.0%
AGCAGATGGCATGAAATCGG+TGG - chr3_4:72298112-72298131 Msa0519940:CDS 50.0%
!! AAGATCAAGGTGCACCGGTT+GGG - chr3_4:72299167-72299186 Msa0519940:CDS 50.0%
GAACAAACAATAGGCCCCAC+AGG + chr3_4:72299223-72299242 None:intergenic 50.0%
ATGGCACATCCTGCTGTTGA+TGG - chr3_4:72299358-72299377 Msa0519940:intron 50.0%
CATGGCCATCTTGATGAGCA+AGG - chr3_4:72299511-72299530 Msa0519940:intron 50.0%
TGGCCATCTTGATGAGCAAG+GGG - chr3_4:72299513-72299532 Msa0519940:intron 50.0%
TGATAAGGGCGGCTCTTCAT+TGG - chr3_4:72299618-72299637 Msa0519940:intron 50.0%
CAATGCTGGAAACCTCCCTG+AGG - chr3_4:72296398-72296417 Msa0519940:three_prime_UTR 55.0%
CCGTTCCCTTTGGCTATCGT+AGG - chr3_4:72296555-72296574 Msa0519940:CDS 55.0%
TTCAGGCCATCCTCGAACTC+AGG + chr3_4:72296909-72296928 None:intergenic 55.0%
GTTTATTTGGAAGGCCCCCC+TGG - chr3_4:72297495-72297514 Msa0519940:CDS 55.0%
AGAATGTCAGTGCCTCCAGG+GGG + chr3_4:72297513-72297532 None:intergenic 55.0%
!! TCAAAATCCGGGGGTGTCGA+AGG + chr3_4:72297576-72297595 None:intergenic 55.0%
! TTCGACACCCCCGGATTTTG+AGG - chr3_4:72297575-72297594 Msa0519940:CDS 55.0%
!!! CACCCCCGGATTTTGAGGTT+AGG - chr3_4:72297580-72297599 Msa0519940:CDS 55.0%
AACCTGGATGGGTCCTTCTC+AGG - chr3_4:72297940-72297959 Msa0519940:CDS 55.0%
!! GCTTGGGTCAGGATTGGTTC+CGG - chr3_4:72298007-72298026 Msa0519940:CDS 55.0%
AACTTGGGTCTGTCCTCCGT+TGG + chr3_4:72298086-72298105 None:intergenic 55.0%
CCATCTGCTGTCGGCAACTT+GGG + chr3_4:72298101-72298120 None:intergenic 55.0%
TTCCTGTCGATAGGCAGGCA+AGG - chr3_4:72298230-72298249 Msa0519940:CDS 55.0%
AACCTTGCCTGCCTATCGAC+AGG + chr3_4:72298235-72298254 None:intergenic 55.0%
GGGTAGCAGATGGATCTAGC+TGG + chr3_4:72299063-72299082 None:intergenic 55.0%
! CAAGATCAAGGTGCACCGGT+TGG - chr3_4:72299166-72299185 Msa0519940:CDS 55.0%
!! AGATCAAGGTGCACCGGTTG+GGG - chr3_4:72299168-72299187 Msa0519940:CDS 55.0%
GAGCCGCGACAATGCACATT+TGG - chr3_4:72299414-72299433 Msa0519940:intron 55.0%
GCAGCGCAAGCTTGCCTATG+AGG - chr3_4:72297076-72297095 Msa0519940:CDS 60.0%
TATTTGGAAGGCCCCCCTGG+AGG - chr3_4:72297498-72297517 Msa0519940:CDS 60.0%
GAATGTCAGTGCCTCCAGGG+GGG + chr3_4:72297512-72297531 None:intergenic 60.0%
ATCACCACCTTCGACACCCC+CGG - chr3_4:72297566-72297585 Msa0519940:CDS 60.0%
!! AAATCCGGGGGTGTCGAAGG+TGG + chr3_4:72297573-72297592 None:intergenic 60.0%
TGGACAATGGCACCAACGGG+TGG - chr3_4:72297786-72297805 Msa0519940:intron 60.0%
ACCAACGGGTGGTCTCCTCT+TGG - chr3_4:72297797-72297816 Msa0519940:intron 60.0%
ACCAAGAGGAGACCACCCGT+TGG + chr3_4:72297801-72297820 None:intergenic 60.0%
GGTCCTCATGAACCCCTGAG+TGG - chr3_4:72297887-72297906 Msa0519940:intron 60.0%
CGTCCACTCAGGGGTTCATG+AGG + chr3_4:72297893-72297912 None:intergenic 60.0%
GTTGACGGCCAATGGGCCAA+CGG - chr3_4:72298067-72298086 Msa0519940:CDS 60.0%
TCTGTCCTCCGTTGGCCCAT+TGG + chr3_4:72298078-72298097 None:intergenic 60.0%
CCCAAGTTGCCGACAGCAGA+TGG - chr3_4:72298098-72298117 Msa0519940:CDS 60.0%
GCCATCTGCTGTCGGCAACT+TGG + chr3_4:72298102-72298121 None:intergenic 60.0%
!! GATCAAGGTGCACCGGTTGG+GGG - chr3_4:72299169-72299188 Msa0519940:CDS 60.0%
CGCCTGAGAAGGACCCATCC+AGG + chr3_4:72297945-72297964 None:intergenic 65.0%
!! GGTGCACCGGTTGGGGGAAT+AGG - chr3_4:72299175-72299194 Msa0519940:CDS 65.0%
GACGGCCAATGGGCCAACGG+AGG - chr3_4:72298070-72298089 Msa0519940:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 72296378 72299820 72296378 ID=Msa0519940;Name=Msa0519940
chr3_4 mRNA 72296378 72299820 72296378 ID=Msa0519940-mRNA-1;Parent=Msa0519940;Name=Msa0519940-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0.5|0.4|1|1|1|5|160|748
chr3_4 exon 72296378 72297647 72296378 ID=Msa0519940-mRNA-1:exon:19956;Parent=Msa0519940-mRNA-1
chr3_4 exon 72297916 72298452 72297916 ID=Msa0519940-mRNA-1:exon:19955;Parent=Msa0519940-mRNA-1
chr3_4 exon 72298602 72298772 72298602 ID=Msa0519940-mRNA-1:exon:19954;Parent=Msa0519940-mRNA-1
chr3_4 exon 72298987 72299346 72298987 ID=Msa0519940-mRNA-1:exon:19953;Parent=Msa0519940-mRNA-1
chr3_4 exon 72299752 72299820 72299752 ID=Msa0519940-mRNA-1:exon:19952;Parent=Msa0519940-mRNA-1
chr3_4 CDS 72299752 72299820 72299752 ID=Msa0519940-mRNA-1:cds;Parent=Msa0519940-mRNA-1
chr3_4 CDS 72298987 72299346 72298987 ID=Msa0519940-mRNA-1:cds;Parent=Msa0519940-mRNA-1
chr3_4 CDS 72298602 72298772 72298602 ID=Msa0519940-mRNA-1:cds;Parent=Msa0519940-mRNA-1
chr3_4 CDS 72297916 72298452 72297916 ID=Msa0519940-mRNA-1:cds;Parent=Msa0519940-mRNA-1
chr3_4 CDS 72296538 72297647 72296538 ID=Msa0519940-mRNA-1:cds;Parent=Msa0519940-mRNA-1
chr3_4 three_prime_UTR 72296378 72296537 72296378 ID=Msa0519940-mRNA-1:three_prime_utr;Parent=Msa0519940-mRNA-1
Gene Sequence

>Msa0519940

ATGGAAAACTCGGAGATGATCAATGCTGGAAACCTCCCTGAGGCATGTACTTCTAATACCCACTATTCAAAGAAAACAAACACAAAATGTGTTTCCACTGACGATGAAAACATCATACTAAATCCTGAGTTCGAGGATGGCCTGAATAATTGGACTGGAAGAGGCTGCAAGATTGCAGTACATGAGTCCATGGCAAATGGGAAAATCCTTCCAAAATCCGGGAAGTTCTTTGCATCTGCAACTGAACGCACACAAAGCTGGAATGGAATTCAGCAAGAAATCACTGGAAGAGTGCAGCGCAAGCTTGCCTATGAGGTCACTGCTTTAGTTCGGATATTTGGGAACAATGTCACTTCTTCTGATGTACGTGCTACATTGTATGTTCAAAAACCAGATCTTCGAGAGCAGTATATAGGCATTGCCAAGTTAGCAACAGATAAAGATTGGGCTCAAATGCAGGGAAAGTTCCTTCTAAATGATTCCCCTTCAAAAGTAGTTGTTTATTTGGAAGGCCCCCCTGGAGGCACTGACATTCTTCTAAATACTTTTGTTATAAAGCATGCAGCTAAATCACCACCTTCGACACCCCCGGATTTTGAGAATGTTGCTTTTGGTGTCAATATAATTGAGAACAGCAATCTGGACAATGGCACCAACGGGTGGTCTCCTCTTGGTAATTGTACTTTGAGCATCGGAACTGGTTCACCGCGTGTAATTCCACCAATGGCAAGAGACTCTCTTGGTCCTCATGAACCCCTGAGTGGACGTTACATTCTTGTAACCAATCGCACTCAAACCTGGATGGGTCCTTCTCAGGCGATCACTGAGAAATTGAAACTCTATTTAACATATCAAGTATCTGCTTGGGTCAGGATTGGTTCCGGATCACATGGCCCTCAGAATGTTGGTATTGCCTTTAGTGTTGACGGCCAATGGGCCAACGGAGGACAGACCCAAGTTGCCGACAGCAGATGGCATGAAATCGGTGGTTCGTTTAGAATTGAAAAGCAGCCATCTAATGTTTTTGTTTACATTCAAGGTCCAGTTTCTGGTGTTGACTTAATGGTTGCTGGACTTCAAATTTTTCCTGTCGATAGGCAGGCAAGGTTTAGATATTTATGCGAGCAGACAGACAAGATCCGTAAGCGTGATGTTACTTTAAAATTTTCTGGGCTGGACACAAGCGAGTATACCTTTGTGAAAGTTAAACAAATACAGAACGATTTTCCAATTGGATCGTGCATCAATAGAACAAATATTGACAATGAAGATTTTGTTGACTTCTTTGTGCAACATTTTAACTGGGCTGTATTTGGTAATGAGTTGAAGTGGTATTGGACAGAGCCACAAAAAGGGAATTTCAACTATAAGGATGCTGATGATATGTTAGACTTGTGTCAGAAGTACAAGATAGACATTCGCGGACATTGTATCTTCTGGGAAGTCGACAGCAATGTTCAACAATGGGTCAAATCACTGAATAAAAATGATTTACTGACGGCTGTCCAAAATCGCTTAACTGGCTTATTGTCTCGCTACAAAGGCAAGTTCAAGCACTATGATGTTAACAATGAAATGTTGCATGGTTCATTTTATCAAGACAGACTAGGTAAGGATATAAGGGCAAACATGTTCAAGATTGCACACCAGCTAGATCCATCTGCTACCCTATTTGTGAATGATTATCATGTTGAAGATGGAGACGACATAAATTCATCGCCAGAAAAATACACACAACAGATTCTTGATTTGCAAGATCAAGGTGCACCGGTTGGGGGAATAGGAATTCAAGGTCACATTGATAGTCCTGTGGGGCCTATTGTTTGTTCTGCACTCGATAAGTTGGCTACTCTTGGTCAACCAATATGGTTTACCGAGCTTGATGTGTCTTCCACTAATGAATATGTTCGAGGCGATGATTTGGAAGTTATGTTGCGCGAAGCTATGGCACATCCTGCTGTTGATGGTGTAATGCTATGGGGCTTTTGGGAGTTGTTTATGAGCCGCGACAATGCACATTTGGTGAATGCAGAAGGTGAAATCAATGAAGCTGGGAGAAGATTCCTTGATCTTAAAGAAGAGTGGTTATCTCACACTCATGGCCATCTTGATGAGCAAGGGGAATTCAACTTCAGGGGATTCAGTGGTTTGTACAATGTGGAAATTGTTACCTTTGAAAAGGTAATTTGCCAGACATTCGTTGTTGATAAGGGCGGCTCTTCATTGGTGATATCAATCGATCTGTAA

Protein sequence

>Msa0519940

MENSEMINAGNLPEACTSNTHYSKKTNTKCVSTDDENIILNPEFEDGLNNWTGRGCKIAVHESMANGKILPKSGKFFASATERTQSWNGIQQEITGRVQRKLAYEVTALVRIFGNNVTSSDVRATLYVQKPDLREQYIGIAKLATDKDWAQMQGKFLLNDSPSKVVVYLEGPPGGTDILLNTFVIKHAAKSPPSTPPDFENVAFGVNIIENSNLDNGTNGWSPLGNCTLSIGTGSPRVIPPMARDSLGPHEPLSGRYILVTNRTQTWMGPSQAITEKLKLYLTYQVSAWVRIGSGSHGPQNVGIAFSVDGQWANGGQTQVADSRWHEIGGSFRIEKQPSNVFVYIQGPVSGVDLMVAGLQIFPVDRQARFRYLCEQTDKIRKRDVTLKFSGLDTSEYTFVKVKQIQNDFPIGSCINRTNIDNEDFVDFFVQHFNWAVFGNELKWYWTEPQKGNFNYKDADDMLDLCQKYKIDIRGHCIFWEVDSNVQQWVKSLNKNDLLTAVQNRLTGLLSRYKGKFKHYDVNNEMLHGSFYQDRLGKDIRANMFKIAHQLDPSATLFVNDYHVEDGDDINSSPEKYTQQILDLQDQGAPVGGIGIQGHIDSPVGPIVCSALDKLATLGQPIWFTELDVSSTNEYVRGDDLEVMLREAMAHPAVDGVMLWGFWELFMSRDNAHLVNAEGEINEAGRRFLDLKEEWLSHTHGHLDEQGEFNFRGFSGLYNVEIVTFEKVICQTFVVDKGGSSLVISIDL*