Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519940 | XP_013461832.1 | 96.262 | 749 | 18 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519940 | sp|A0A1P8AWH8|XYN1_ARATH | 69.577 | 733 | 218 | 4 | 21 | 748 | 210 | 942 | 0.0 | 1095 |
| Msa0519940 | sp|A0A1P8AWH8|XYN1_ARATH | 28.779 | 344 | 213 | 8 | 31 | 361 | 51 | 375 | 1.22e-32 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519940 | A0A072V240 | 96.262 | 749 | 18 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039640 | Msa0519940 | 0.801524 | 8.646571e-49 | -8.615850e-47 |
| Msa0087280 | Msa0519940 | 0.813128 | 2.993565e-51 | -8.615850e-47 |
| Msa0133920 | Msa0519940 | 0.809843 | 1.548349e-50 | -8.615850e-47 |
| Msa0140640 | Msa0519940 | 0.993314 | 6.929185e-199 | -8.615850e-47 |
| Msa0154760 | Msa0519940 | 0.810682 | 1.020808e-50 | -8.615850e-47 |
| Msa0381450 | Msa0519940 | 0.919519 | 4.068560e-87 | -8.615850e-47 |
| Msa0476050 | Msa0519940 | 0.911700 | 4.520018e-83 | -8.615850e-47 |
| Msa0519940 | Msa0660890 | 0.803250 | 3.812851e-49 | -8.615850e-47 |
| Msa0519940 | Msa0757410 | 0.807901 | 4.030304e-50 | -8.615850e-47 |
| Msa0519940 | Msa0799170 | 0.846875 | 1.650014e-59 | -8.615850e-47 |
| Msa0519940 | Msa0837610 | 0.850521 | 1.608907e-60 | -8.615850e-47 |
| Msa0519940 | Msa1191550 | 0.804285 | 2.324894e-49 | -8.615850e-47 |
| Msa0519940 | Msa1369030 | 0.818684 | 1.724220e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519940 | MtrunA17_Chr3g0135341 | 96.262 | 749 | 18 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1498 |
| Msa0519940 | MtrunA17_Chr1g0151951 | 79.086 | 722 | 148 | 2 | 30 | 748 | 209 | 930 | 0.0 | 1222 |
| Msa0519940 | MtrunA17_Chr1g0151951 | 30.792 | 341 | 211 | 7 | 33 | 361 | 38 | 365 | 3.48e-34 | 140 |
| Msa0519940 | MtrunA17_Chr3g0145541 | 33.588 | 524 | 310 | 15 | 249 | 748 | 50 | 559 | 6.64e-77 | 258 |
| Msa0519940 | MtrunA17_Chr5g0421191 | 29.926 | 538 | 311 | 17 | 208 | 722 | 43 | 537 | 5.89e-64 | 223 |
| Msa0519940 | MtrunA17_Chr1g0207211 | 28.440 | 545 | 338 | 14 | 197 | 722 | 41 | 552 | 1.44e-62 | 219 |
| Msa0519940 | MtrunA17_Chr7g0223191 | 29.346 | 535 | 318 | 15 | 208 | 722 | 17 | 511 | 8.91e-62 | 216 |
| Msa0519940 | MtrunA17_Chr4g0037551 | 31.906 | 467 | 276 | 14 | 208 | 663 | 46 | 481 | 4.91e-61 | 215 |
| Msa0519940 | MtrunA17_Chr1g0207241 | 29.873 | 472 | 296 | 12 | 200 | 661 | 50 | 496 | 2.61e-60 | 214 |
| Msa0519940 | MtrunA17_Chr1g0207201 | 31.362 | 389 | 250 | 9 | 282 | 660 | 1 | 382 | 4.46e-56 | 199 |
| Msa0519940 | MtrunA17_Chr1g0207231 | 28.319 | 452 | 305 | 11 | 282 | 722 | 1 | 444 | 3.88e-54 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0519940 | AT1G58370.2 | 69.577 | 733 | 218 | 4 | 21 | 748 | 210 | 942 | 0.0 | 1095 |
| Msa0519940 | AT1G58370.2 | 28.779 | 344 | 213 | 8 | 31 | 361 | 51 | 375 | 1.24e-33 | 139 |
| Msa0519940 | AT1G58370.1 | 69.577 | 733 | 218 | 4 | 21 | 748 | 182 | 914 | 0.0 | 1095 |
| Msa0519940 | AT1G58370.1 | 28.779 | 344 | 213 | 8 | 31 | 361 | 23 | 347 | 1.38e-33 | 139 |
| Msa0519940 | AT4G08160.1 | 66.310 | 748 | 239 | 6 | 14 | 748 | 2 | 749 | 0.0 | 1041 |
| Msa0519940 | AT1G10050.2 | 61.299 | 739 | 277 | 6 | 16 | 748 | 328 | 1063 | 0.0 | 955 |
| Msa0519940 | AT1G10050.2 | 25.634 | 355 | 233 | 9 | 35 | 374 | 3 | 341 | 2.88e-29 | 125 |
| Msa0519940 | AT1G10050.1 | 61.299 | 739 | 277 | 6 | 16 | 748 | 328 | 1063 | 0.0 | 955 |
| Msa0519940 | AT1G10050.1 | 25.634 | 355 | 233 | 9 | 35 | 374 | 3 | 341 | 2.88e-29 | 125 |
| Msa0519940 | AT1G10050.3 | 61.299 | 739 | 277 | 6 | 16 | 748 | 360 | 1095 | 0.0 | 954 |
| Msa0519940 | AT1G10050.3 | 25.294 | 340 | 225 | 7 | 35 | 361 | 35 | 358 | 3.40e-29 | 125 |
| Msa0519940 | AT4G08160.2 | 67.073 | 656 | 203 | 6 | 14 | 656 | 2 | 657 | 0.0 | 918 |
| Msa0519940 | AT4G38650.1 | 34.328 | 469 | 287 | 10 | 284 | 738 | 91 | 552 | 5.79e-74 | 251 |
| Msa0519940 | AT4G33830.1 | 29.679 | 529 | 326 | 14 | 208 | 722 | 47 | 543 | 3.15e-67 | 233 |
| Msa0519940 | AT4G33840.1 | 28.868 | 530 | 330 | 12 | 208 | 722 | 46 | 543 | 7.47e-67 | 232 |
| Msa0519940 | AT4G33860.1 | 28.947 | 532 | 329 | 13 | 208 | 723 | 46 | 544 | 4.35e-61 | 216 |
| Msa0519940 | AT4G38300.1 | 43.359 | 256 | 131 | 4 | 381 | 632 | 12 | 257 | 8.07e-60 | 204 |
| Msa0519940 | AT2G14690.1 | 31.011 | 445 | 277 | 16 | 284 | 707 | 82 | 517 | 2.89e-52 | 191 |
| Msa0519940 | AT4G33810.1 | 28.747 | 407 | 269 | 12 | 269 | 661 | 33 | 432 | 3.09e-51 | 187 |
| Msa0519940 | AT4G33810.5 | 28.747 | 407 | 269 | 12 | 269 | 661 | 33 | 432 | 3.09e-51 | 187 |
| Msa0519940 | AT4G33810.2 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.85e-51 | 187 |
| Msa0519940 | AT4G33810.3 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.85e-51 | 187 |
| Msa0519940 | AT4G33810.4 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.85e-51 | 187 |
| Msa0519940 | AT4G33820.1 | 29.049 | 389 | 259 | 10 | 284 | 661 | 90 | 472 | 7.01e-49 | 181 |
Find 186 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCTTTAGTTCGGATATT+TGG | 0.103053 | 3_4:-72299075 | Msa0519940:CDS |
| TACATTCAAGGTCCAGTTTC+TGG | 0.151513 | 3_4:-72298001 | Msa0519940:CDS |
| TTCAAAAGTAGTTGTTTATT+TGG | 0.166485 | 3_4:-72298694 | Msa0519940:CDS |
| ATAAGCCAGTTAAGCGATTT+TGG | 0.179789 | 3_4:+72297257 | None:intergenic |
| GCAAAGAACTTCCCGGATTT+TGG | 0.200315 | 3_4:+72299183 | None:intergenic |
| GTGTAATGCTATGGGGCTTT+TGG | 0.215964 | 3_4:-72296796 | Msa0519940:CDS |
| CATGATAATCATTCACAAAT+AGG | 0.218933 | 3_4:+72297095 | None:intergenic |
| ACAGACTAGGTAAGGATATA+AGG | 0.260677 | 3_4:-72297162 | Msa0519940:CDS |
| AGTTTCTGGTGTTGACTTAA+TGG | 0.273413 | 3_4:-72297987 | Msa0519940:CDS |
| CTACTCTTGGTCAACCAATA+TGG | 0.285540 | 3_4:-72296916 | Msa0519940:CDS |
| CTCTTCCAGTCCAATTATTC+AGG | 0.294811 | 3_4:+72299253 | None:intergenic |
| CTGCTTTAGTTCGGATATTT+GGG | 0.297447 | 3_4:-72299074 | Msa0519940:CDS |
| GGTGTTGACTTAATGGTTGC+TGG | 0.301216 | 3_4:-72297980 | Msa0519940:CDS |
| TTCGCGGACATTGTATCTTC+TGG | 0.301509 | 3_4:-72297345 | Msa0519940:CDS |
| TCGAGGATGGCCTGAATAAT+TGG | 0.308205 | 3_4:-72299263 | Msa0519940:CDS |
| AAAAGGGAATTTCAACTATA+AGG | 0.329649 | 3_4:-72297413 | Msa0519940:CDS |
| AGAAATAAAATAATATTTGT+TGG | 0.340449 | 3_4:-72296388 | Msa0519940:three_prime_UTR |
| GGGAAAATCCTTCCAAAATC+CGG | 0.368365 | 3_4:-72299195 | Msa0519940:CDS |
| GCTGTCCAAAATCGCTTAAC+TGG | 0.369480 | 3_4:-72297262 | Msa0519940:CDS |
| CCAGACATTCGTTGTTGATA+AGG | 0.370442 | 3_4:-72296573 | Msa0519940:CDS |
| CAGACATTCGTTGTTGATAA+GGG | 0.372479 | 3_4:-72296572 | Msa0519940:CDS |
| AGCAAGGGGAATTCAACTTC+AGG | 0.373704 | 3_4:-72296649 | Msa0519940:CDS |
| GCCATCTGCTGTCGGCAACT+TGG | 0.380256 | 3_4:+72298077 | None:intergenic |
| GAGCCGCGACAATGCACATT+TGG | 0.384503 | 3_4:-72296762 | Msa0519940:CDS |
| TAATGTAATGAAAAGATTGA+TGG | 0.389625 | 3_4:-72296427 | Msa0519940:three_prime_UTR |
| TATTGGACAGAGCCACAAAA+AGG | 0.390280 | 3_4:-72297430 | Msa0519940:CDS |
| ATTAAGTCAACACCAGAAAC+TGG | 0.390421 | 3_4:+72297989 | None:intergenic |
| TTGAAGGGGAATCATTTAGA+AGG | 0.394630 | 3_4:+72298712 | None:intergenic |
| GTATTGCAGAATGTTGCTTT+TGG | 0.399531 | 3_4:-72298439 | Msa0519940:intron |
| GAAAGCCTAACCTCAAAATC+CGG | 0.403044 | 3_4:+72298591 | None:intergenic |
| GTAATGAGTTGAAGTGGTAT+TGG | 0.405250 | 3_4:-72297447 | Msa0519940:CDS |
| CCTTTAGTGTTGACGGCCAA+TGG | 0.409839 | 3_4:-72298117 | Msa0519940:CDS |
| AGATCAAGGTGCACCGGTTG+GGG | 0.410100 | 3_4:-72297008 | Msa0519940:CDS |
| AAGATCAAGGTGCACCGGTT+GGG | 0.410879 | 3_4:-72297009 | Msa0519940:CDS |
| AGATTGATGGACTGTCATAT+TGG | 0.411058 | 3_4:-72296414 | Msa0519940:three_prime_UTR |
| CTGTTGATGGTGTAATGCTA+TGG | 0.411947 | 3_4:-72296805 | Msa0519940:CDS |
| ATTCTTGATTTGCAAGATCA+AGG | 0.412518 | 3_4:-72297022 | Msa0519940:CDS |
| TGCAGGCAACAGATAAAGAT+TGG | 0.414707 | 3_4:-72298755 | Msa0519940:intron |
| ATGATAATCATTCACAAATA+GGG | 0.417257 | 3_4:+72297096 | None:intergenic |
| ATATGTTCGAGGCGATGATT+TGG | 0.420483 | 3_4:-72296861 | Msa0519940:CDS |
| TCAAGCTCGGTAAACCATAT+TGG | 0.421495 | 3_4:+72296902 | None:intergenic |
| ACCACTCTTCTTTAAGATCA+AGG | 0.422719 | 3_4:+72296699 | None:intergenic |
| TATAATTGAGAACAGCAATC+TGG | 0.426399 | 3_4:-72298410 | Msa0519940:CDS |
| GCTTGGGTCAGGATTGGTTC+CGG | 0.428334 | 3_4:-72298169 | Msa0519940:CDS |
| CTTCAGAAACTTGTATTACA+TGG | 0.429240 | 3_4:-72296514 | Msa0519940:three_prime_UTR |
| GATCTTCGAGAGCAGTATAT+AGG | 0.430612 | 3_4:-72299000 | Msa0519940:CDS |
| CTCGATAAGTTGGCTACTCT+TGG | 0.431121 | 3_4:-72296929 | Msa0519940:CDS |
| TCGCGGACATTGTATCTTCT+GGG | 0.432457 | 3_4:-72297344 | Msa0519940:CDS |
| TAAAGATTGGGCTCAAATGC+AGG | 0.434482 | 3_4:-72298742 | Msa0519940:CDS |
| ATATACTGCTCTCGAAGATC+TGG | 0.434721 | 3_4:+72299003 | None:intergenic |
| TGATAAGGGCGGCTCTTCAT+TGG | 0.438724 | 3_4:-72296558 | Msa0519940:CDS |
| TGCAGATGCAAAGAACTTCC+CGG | 0.438822 | 3_4:+72299176 | None:intergenic |
| AACCTGGATGGGTCCTTCTC+AGG | 0.439305 | 3_4:-72298236 | Msa0519940:CDS |
| TCTGTCCTCCGTTGGCCCAT+TGG | 0.442065 | 3_4:+72298101 | None:intergenic |
| CCATCTGCTGTCGGCAACTT+GGG | 0.445406 | 3_4:+72298078 | None:intergenic |
| GGAAATTGTTACCTTTGAAA+AGG | 0.451541 | 3_4:-72296603 | Msa0519940:CDS |
| ATCAAGTATCTGCTTGGGTC+AGG | 0.452969 | 3_4:-72298180 | Msa0519940:CDS |
| CAACTGAACGCACACAAAGC+TGG | 0.453239 | 3_4:-72299155 | Msa0519940:CDS |
| AAAGTAGTTGTTTATTTGGA+AGG | 0.453467 | 3_4:-72298690 | Msa0519940:CDS |
| CCTTATCAACAACGAATGTC+TGG | 0.454734 | 3_4:+72296573 | None:intergenic |
| GTACATGAGTCCATGGCAAA+TGG | 0.457411 | 3_4:-72299216 | Msa0519940:CDS |
| TAACATATCAAGTATCTGCT+TGG | 0.458399 | 3_4:-72298186 | Msa0519940:CDS |
| TAGTGTGGTATACTGAATAG+TGG | 0.459390 | 3_4:+72299739 | None:intergenic |
| TTCAGGCCATCCTCGAACTC+AGG | 0.461619 | 3_4:+72299270 | None:intergenic |
| TTAAAGTAACATCACGCTTA+CGG | 0.463167 | 3_4:+72297623 | None:intergenic |
| CAGACTAGGTAAGGATATAA+GGG | 0.465786 | 3_4:-72297161 | Msa0519940:CDS |
| ATTCTGAGGGCCATGTGATC+CGG | 0.465999 | 3_4:+72298150 | None:intergenic |
| GTATCTGCTTGGGTCAGGAT+TGG | 0.466467 | 3_4:-72298175 | Msa0519940:CDS |
| AACATATCAAGTATCTGCTT+GGG | 0.466505 | 3_4:-72298185 | Msa0519940:CDS |
| ATGGCACATCCTGCTGTTGA+TGG | 0.466570 | 3_4:-72296818 | Msa0519940:CDS |
| GCCTCGAACATATTCATTAG+TGG | 0.466710 | 3_4:+72296871 | None:intergenic |
| ATCTGGACAATGGCACCAAC+GGG | 0.468015 | 3_4:-72298393 | Msa0519940:CDS |
| TGTTGATGGTGTAATGCTAT+GGG | 0.468563 | 3_4:-72296804 | Msa0519940:CDS |
| TAACCAATCGCACTCAAACC+TGG | 0.473942 | 3_4:-72298252 | Msa0519940:CDS |
| CTTTAGTGTTGACGGCCAAT+GGG | 0.475195 | 3_4:-72298116 | Msa0519940:CDS |
| CTGAATAATTGGACTGGAAG+AGG | 0.476567 | 3_4:-72299252 | Msa0519940:CDS |
| GACAGCAGATGGCATGAAAT+CGG | 0.479030 | 3_4:-72298067 | Msa0519940:CDS |
| TCGAGTGCAGAACAAACAAT+AGG | 0.483133 | 3_4:+72296947 | None:intergenic |
| GAAGGTGAAATCAATGAAGC+TGG | 0.483325 | 3_4:-72296731 | Msa0519940:CDS |
| AGTTATGTTGCGCGAAGCTA+TGG | 0.486478 | 3_4:-72296837 | Msa0519940:CDS |
| AACTTGGGTCTGTCCTCCGT+TGG | 0.487407 | 3_4:+72298093 | None:intergenic |
| TGTACTTTGAGCATCGGAAC+TGG | 0.488314 | 3_4:-72298352 | Msa0519940:CDS |
| GGTATTGCCTTTAGTGTTGA+CGG | 0.489124 | 3_4:-72298124 | Msa0519940:CDS |
| AGAGAGTCTCTTGCCATTGG+TGG | 0.492478 | 3_4:+72298313 | None:intergenic |
| ATGAGGTCACTGCTTTAGTT+CGG | 0.493909 | 3_4:-72299083 | Msa0519940:CDS |
| CATACTAAATCCTGAGTTCG+AGG | 0.497515 | 3_4:-72299280 | Msa0519940:CDS |
| AACTCGGAGATGATCAATGC+TGG | 0.498002 | 3_4:-72299792 | Msa0519940:CDS |
| AGAAGAATGTCAGTGCCTCC+AGG | 0.498736 | 3_4:+72298663 | None:intergenic |
| CGACAGCAATGTTCAACAAT+GGG | 0.503377 | 3_4:-72297317 | Msa0519940:CDS |
| GTATTAGAAGTACATGCCTC+AGG | 0.505454 | 3_4:+72299762 | None:intergenic |
| TTATCAAGACAGACTAGGTA+AGG | 0.507118 | 3_4:-72297170 | Msa0519940:CDS |
| ATTCCCCTTGCTCATCAAGA+TGG | 0.507602 | 3_4:+72296660 | None:intergenic |
| CATCCAGGTTTGAGTGCGAT+TGG | 0.509313 | 3_4:+72298249 | None:intergenic |
| AACCTTGCCTGCCTATCGAC+AGG | 0.513887 | 3_4:+72297944 | None:intergenic |
| TCCACTAATGAATATGTTCG+AGG | 0.514151 | 3_4:-72296872 | Msa0519940:CDS |
| CCATTGGCCGTCAACACTAA+AGG | 0.515778 | 3_4:+72298117 | None:intergenic |
| TACATGAGTCCATGGCAAAT+GGG | 0.515874 | 3_4:-72299215 | Msa0519940:CDS |
| TCCTTGATCTTAAAGAAGAG+TGG | 0.516884 | 3_4:-72296700 | Msa0519940:CDS |
| CAAGATCAAGGTGCACCGGT+TGG | 0.520918 | 3_4:-72297010 | Msa0519940:CDS |
| AAAGCCTAACCTCAAAATCC+GGG | 0.520954 | 3_4:+72298592 | None:intergenic |
| GGTAATTGTACTTTGAGCAT+CGG | 0.525699 | 3_4:-72298358 | Msa0519940:CDS |
| CAAGAATGTAACGTCCACTC+AGG | 0.526881 | 3_4:+72298275 | None:intergenic |
| GGAATTCAGCAAGAAATCAC+TGG | 0.527804 | 3_4:-72299129 | Msa0519940:CDS |
| ACCAACGGGTGGTCTCCTCT+TGG | 0.529762 | 3_4:-72298379 | Msa0519940:CDS |
| CTATTGATGCACGATCCAAT+TGG | 0.531809 | 3_4:+72297535 | None:intergenic |
| AACTAAAGCAGTGACCTCAT+AGG | 0.532142 | 3_4:+72299086 | None:intergenic |
| CGCCTGAGAAGGACCCATCC+AGG | 0.534151 | 3_4:+72298234 | None:intergenic |
| GCAGCGCAAGCTTGCCTATG+AGG | 0.535069 | 3_4:-72299100 | Msa0519940:CDS |
| ATCACCACCTTCGACACCCC+CGG | 0.535089 | 3_4:-72298610 | Msa0519940:CDS |
| GAACGCACACAAAGCTGGAA+TGG | 0.536071 | 3_4:-72299150 | Msa0519940:CDS |
| AATGATTATCATGTTGAAGA+TGG | 0.536653 | 3_4:-72297085 | Msa0519940:CDS |
| GGAAAATCCTTCCAAAATCC+GGG | 0.538434 | 3_4:-72299194 | Msa0519940:CDS |
| TTGTTCTGCACTCGATAAGT+TGG | 0.539626 | 3_4:-72296939 | Msa0519940:CDS |
| CCCAAGTTGCCGACAGCAGA+TGG | 0.542895 | 3_4:-72298078 | Msa0519940:CDS |
| GCAAGGGGAATTCAACTTCA+GGG | 0.545056 | 3_4:-72296648 | Msa0519940:CDS |
| CCAAGAGAGTCTCTTGCCAT+TGG | 0.545489 | 3_4:+72298310 | None:intergenic |
| CAATCGCACTCAAACCTGGA+TGG | 0.554026 | 3_4:-72298248 | Msa0519940:CDS |
| ATGAGATGGAGATACTAACT+TGG | 0.555489 | 3_4:+72298972 | None:intergenic |
| GCAGGCAACAGATAAAGATT+GGG | 0.558763 | 3_4:-72298754 | Msa0519940:intron |
| ATGGCCATCTTGATGAGCAA+GGG | 0.560153 | 3_4:-72296664 | Msa0519940:CDS |
| AATCTGGACAATGGCACCAA+CGG | 0.563221 | 3_4:-72298394 | Msa0519940:CDS |
| GGTCACATTGATAGTCCTGT+GGG | 0.563973 | 3_4:-72296971 | Msa0519940:CDS |
| TTCTCAGTGATCGCCTGAGA+AGG | 0.568117 | 3_4:+72298223 | None:intergenic |
| TTCAACTTCAGGGGATTCAG+TGG | 0.569777 | 3_4:-72296638 | Msa0519940:CDS |
| CTAAATCCTGAGTTCGAGGA+TGG | 0.569968 | 3_4:-72299276 | Msa0519940:CDS |
| GGCTTATTGTCTCGCTACAA+AGG | 0.570792 | 3_4:-72297241 | Msa0519940:CDS |
| GATGGCCTGAATAATTGGAC+TGG | 0.575465 | 3_4:-72299258 | Msa0519940:CDS |
| AGGATTGGTTCCGGATCACA+TGG | 0.576001 | 3_4:-72298160 | Msa0519940:CDS |
| GATTGCAGTACATGAGTCCA+TGG | 0.578636 | 3_4:-72299223 | Msa0519940:CDS |
| AAGGCAATACCAACATTCTG+AGG | 0.578941 | 3_4:+72298136 | None:intergenic |
| CATGGCCATCTTGATGAGCA+AGG | 0.580614 | 3_4:-72296665 | Msa0519940:CDS |
| AAGAATGTAACGTCCACTCA+GGG | 0.582309 | 3_4:+72298276 | None:intergenic |
| TCACATGGCCCTCAGAATGT+TGG | 0.584688 | 3_4:-72298145 | Msa0519940:CDS |
| AATCGCACTCAAACCTGGAT+GGG | 0.586825 | 3_4:-72298247 | Msa0519940:CDS |
| AAGAATGTCAGTGCCTCCAG+GGG | 0.587074 | 3_4:+72298665 | None:intergenic |
| TTCACAAATAGGGTAGCAGA+TGG | 0.588059 | 3_4:+72297106 | None:intergenic |
| ACCGCGTGTAATTCCACCAA+TGG | 0.588150 | 3_4:-72298326 | Msa0519940:CDS |
| AGTGTGGTATACTGAATAGT+GGG | 0.591386 | 3_4:+72299740 | None:intergenic |
| AGCATTACACCATCAACAGC+AGG | 0.593920 | 3_4:+72296809 | None:intergenic |
| GTTGACGGCCAATGGGCCAA+CGG | 0.594155 | 3_4:-72298109 | Msa0519940:CDS |
| TTGAGAAACTATGGAAAACT+CGG | 0.594826 | 3_4:-72299808 | None:intergenic |
| TCGACAGCAATGTTCAACAA+TGG | 0.595009 | 3_4:-72297318 | Msa0519940:CDS |
| AAAGATTGGGCTCAAATGCA+GGG | 0.597935 | 3_4:-72298741 | Msa0519940:CDS |
| TTCCTGTCGATAGGCAGGCA+AGG | 0.599356 | 3_4:-72297946 | Msa0519940:CDS |
| GAACAAACAATAGGCCCCAC+AGG | 0.602172 | 3_4:+72296956 | None:intergenic |
| GGGTAGCAGATGGATCTAGC+TGG | 0.605427 | 3_4:+72297116 | None:intergenic |
| CAAGGGGAATTCAACTTCAG+GGG | 0.608694 | 3_4:-72296647 | Msa0519940:CDS |
| TTTGCAAGATCAAGGTGCAC+CGG | 0.608977 | 3_4:-72297014 | Msa0519940:CDS |
| TCACCAAATGTGCATTGTCG+CGG | 0.609213 | 3_4:+72296759 | None:intergenic |
| CCAATGGCAAGAGACTCTCT+TGG | 0.609407 | 3_4:-72298310 | Msa0519940:CDS |
| AAGTACAAGATAGACATTCG+CGG | 0.610751 | 3_4:-72297361 | Msa0519940:CDS |
| GAGTGGTTATCTCACACTCA+TGG | 0.613588 | 3_4:-72296683 | Msa0519940:CDS |
| AGGTCACATTGATAGTCCTG+TGG | 0.614882 | 3_4:-72296972 | Msa0519940:CDS |
| GAAGAATGTCAGTGCCTCCA+GGG | 0.615547 | 3_4:+72298664 | None:intergenic |
| CGTCCACTCAGGGGTTCATG+AGG | 0.617450 | 3_4:+72298286 | None:intergenic |
| AAGGTGAAATCAATGAAGCT+GGG | 0.619301 | 3_4:-72296730 | Msa0519940:CDS |
| GTTAACAATGAAATGTTGCA+TGG | 0.621327 | 3_4:-72297199 | Msa0519940:CDS |
| TATTAGAAGTACATGCCTCA+GGG | 0.623116 | 3_4:+72299763 | None:intergenic |
| GATTTCATGCCATCTGCTGT+CGG | 0.625782 | 3_4:+72298069 | None:intergenic |
| TGGCCATCTTGATGAGCAAG+GGG | 0.625929 | 3_4:-72296663 | Msa0519940:CDS |
| ATTCAGTGGTTTGTACAATG+TGG | 0.629627 | 3_4:-72296624 | Msa0519940:CDS |
| AGTGGAAGACACATCAAGCT+CGG | 0.630111 | 3_4:+72296889 | None:intergenic |
| TATTTGTTTAACTTTCACAA+AGG | 0.638165 | 3_4:+72297570 | None:intergenic |
| TGGACAATGGCACCAACGGG+TGG | 0.640136 | 3_4:-72298390 | Msa0519940:CDS |
| ACATTCGTTGTTGATAAGGG+CGG | 0.640206 | 3_4:-72296569 | Msa0519940:CDS |
| GACGGCCAATGGGCCAACGG+AGG | 0.644893 | 3_4:-72298106 | Msa0519940:CDS |
| GCACATTTGGTGAATGCAGA+AGG | 0.645010 | 3_4:-72296749 | Msa0519940:CDS |
| TATTTGGTAATGAGTTGAAG+TGG | 0.647331 | 3_4:-72297453 | Msa0519940:CDS |
| AAGCCTAACCTCAAAATCCG+GGG | 0.648361 | 3_4:+72298593 | None:intergenic |
| AGGCAATACCAACATTCTGA+GGG | 0.648383 | 3_4:+72298137 | None:intergenic |
| GGTCCTCATGAACCCCTGAG+TGG | 0.651275 | 3_4:-72298289 | Msa0519940:CDS |
| GAGAACAGCAATCTGGACAA+TGG | 0.655529 | 3_4:-72298403 | Msa0519940:CDS |
| GATCAAGGTGCACCGGTTGG+GGG | 0.658598 | 3_4:-72297007 | Msa0519940:CDS |
| CTCAAAGTACAATTACCAAG+AGG | 0.666083 | 3_4:+72298364 | None:intergenic |
| GCCATTGGTGGAATTACACG+CGG | 0.667698 | 3_4:+72298325 | None:intergenic |
| GTTGATGGTGTAATGCTATG+GGG | 0.671191 | 3_4:-72296803 | Msa0519940:CDS |
| AGCAGATGGCATGAAATCGG+TGG | 0.673951 | 3_4:-72298064 | Msa0519940:CDS |
| AGCCTAACCTCAAAATCCGG+GGG | 0.687022 | 3_4:+72298594 | None:intergenic |
| ACCAAGAGGAGACCACCCGT+TGG | 0.691945 | 3_4:+72298378 | None:intergenic |
| AGAATGTCAGTGCCTCCAGG+GGG | 0.711793 | 3_4:+72298666 | None:intergenic |
| TAGAAGTACATGCCTCAGGG+AGG | 0.715770 | 3_4:+72299766 | None:intergenic |
| GAATGTCAGTGCCTCCAGGG+GGG | 0.716647 | 3_4:+72298667 | None:intergenic |
| AGAATGTAACGTCCACTCAG+GGG | 0.726251 | 3_4:+72298277 | None:intergenic |
| CAATGCTGGAAACCTCCCTG+AGG | 0.737374 | 3_4:-72299778 | Msa0519940:CDS |
| TTTATGCGAGCAGACAGACA+AGG | 0.748258 | 3_4:-72297915 | Msa0519940:intron |
| GTCACATTGATAGTCCTGTG+GGG | 0.751087 | 3_4:-72296970 | Msa0519940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATAAAATAATATTTGT+TGG | - | chr3_4:72299788-72299807 | Msa0519940:CDS | 10.0% |
| !!! | GTTAAATATCTCTTATTTTT+TGG | - | chr3_4:72298430-72298449 | Msa0519940:CDS | 15.0% |
| !!! | ATGTTACTTTAAAATTTTCT+GGG | - | chr3_4:72298564-72298583 | Msa0519940:intron | 15.0% |
| !!! | GGTACATAATTATTTCATTT+TGG | + | chr3_4:72296512-72296531 | None:intergenic | 20.0% |
| !! | TAGAATATTTACAATCACTT+CGG | + | chr3_4:72296675-72296694 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCTTCTGAAATAA+GGG | + | chr3_4:72296843-72296862 | None:intergenic | 20.0% |
| !!! | AATAAACAACTACTTTTGAA+GGG | + | chr3_4:72297482-72297501 | None:intergenic | 20.0% |
| !!! | AAATAAACAACTACTTTTGA+AGG | + | chr3_4:72297483-72297502 | None:intergenic | 20.0% |
| !! | TTCAAAAGTAGTTGTTTATT+TGG | - | chr3_4:72297482-72297501 | Msa0519940:CDS | 20.0% |
| !! | ATGTAAACAAAAACATTAGA+TGG | + | chr3_4:72298160-72298179 | None:intergenic | 20.0% |
| !!! | AATGTTTTTGTTTACATTCA+AGG | - | chr3_4:72298163-72298182 | Msa0519940:CDS | 20.0% |
| !!! | ACGAATTATTGAATTTTCAT+TGG | - | chr3_4:72298301-72298320 | Msa0519940:CDS | 20.0% |
| !!! | GATGTTACTTTAAAATTTTC+TGG | - | chr3_4:72298563-72298582 | Msa0519940:intron | 20.0% |
| !!! | TATTTGTTTAACTTTCACAA+AGG | + | chr3_4:72298609-72298628 | None:intergenic | 20.0% |
| !! | GAATAAAAATGATTTACTGA+CGG | - | chr3_4:72298892-72298911 | Msa0519940:intron | 20.0% |
| !! | ATGATAATCATTCACAAATA+GGG | + | chr3_4:72299083-72299102 | None:intergenic | 20.0% |
| !! | TAATGTAATGAAAAGATTGA+TGG | - | chr3_4:72299749-72299768 | Msa0519940:intron | 20.0% |
| ! | TAAACATATGAAAAGTAGTG+TGG | + | chr3_4:72296455-72296474 | None:intergenic | 25.0% |
| !!! | ATGTGTTTGATTTGTTAACA+AGG | - | chr3_4:72296474-72296493 | Msa0519940:three_prime_UTR | 25.0% |
| !!! | TGTGTTTGATTTGTTAACAA+GGG | - | chr3_4:72296475-72296494 | Msa0519940:three_prime_UTR | 25.0% |
| !!! | TTGTTTTCTTCTGAAATAAG+GGG | + | chr3_4:72296842-72296861 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTCTTCTGAAATA+AGG | + | chr3_4:72296844-72296863 | None:intergenic | 25.0% |
| ! | AGGTAAAGAAATAAATGAGA+TGG | + | chr3_4:72297221-72297240 | None:intergenic | 25.0% |
| ! | CATGTCATTATTCTATGTAT+AGG | + | chr3_4:72297241-72297260 | None:intergenic | 25.0% |
| ! | CATATCTTTAAATTGCTGAA+CGG | - | chr3_4:72297379-72297398 | Msa0519940:CDS | 25.0% |
| !!! | ATAAACAACTACTTTTGAAG+GGG | + | chr3_4:72297481-72297500 | None:intergenic | 25.0% |
| ! | AAAGTAGTTGTTTATTTGGA+AGG | - | chr3_4:72297486-72297505 | Msa0519940:CDS | 25.0% |
| ! | AAAAGGGAATTTCAACTATA+AGG | - | chr3_4:72298763-72298782 | Msa0519940:intron | 25.0% |
| ! | CATGATAATCATTCACAAAT+AGG | + | chr3_4:72299084-72299103 | None:intergenic | 25.0% |
| ! | AATGATTATCATGTTGAAGA+TGG | - | chr3_4:72299091-72299110 | Msa0519940:CDS | 25.0% |
| TCATGAAACAAAGAGAGAAA+TGG | + | chr3_4:72296779-72296798 | None:intergenic | 30.0% | |
| !!! | TGTTTTCTTCTGAAATAAGG+GGG | + | chr3_4:72296841-72296860 | None:intergenic | 30.0% |
| TATAATTGAGAACAGCAATC+TGG | - | chr3_4:72297766-72297785 | Msa0519940:intron | 30.0% | |
| TAACATATCAAGTATCTGCT+TGG | - | chr3_4:72297990-72298009 | Msa0519940:CDS | 30.0% | |
| AACATATCAAGTATCTGCTT+GGG | - | chr3_4:72297991-72298010 | Msa0519940:CDS | 30.0% | |
| ! | TTCAAATTTTTCCTGTCGAT+AGG | - | chr3_4:72298221-72298240 | Msa0519940:CDS | 30.0% |
| ! | ATTGAATTTTCATTGGACGT+TGG | - | chr3_4:72298308-72298327 | Msa0519940:CDS | 30.0% |
| TTAAAGTAACATCACGCTTA+CGG | + | chr3_4:72298556-72298575 | None:intergenic | 30.0% | |
| !!! | TACTTTAAAATTTTCTGGGC+TGG | - | chr3_4:72298568-72298587 | Msa0519940:intron | 30.0% |
| ! | ATACAGAACGATTTTCCAAT+TGG | - | chr3_4:72298626-72298645 | Msa0519940:CDS | 30.0% |
| !! | TCTTTGTGCAACATTTTAAC+TGG | - | chr3_4:72298696-72298715 | Msa0519940:CDS | 30.0% |
| !!! | CTTTGTGCAACATTTTAACT+GGG | - | chr3_4:72298697-72298716 | Msa0519940:CDS | 30.0% |
| !! | TATTTGGTAATGAGTTGAAG+TGG | - | chr3_4:72298723-72298742 | Msa0519940:CDS | 30.0% |
| ! | TAGTTGAAATTCCCTTTTTG+TGG | + | chr3_4:72298761-72298780 | None:intergenic | 30.0% |
| GTTAACAATGAAATGTTGCA+TGG | - | chr3_4:72298977-72298996 | Msa0519940:intron | 30.0% | |
| ! | TCATTTTATCAAGACAGACT+AGG | - | chr3_4:72299001-72299020 | Msa0519940:CDS | 30.0% |
| ! | ATCTGTTGTGTGTATTTTTC+TGG | + | chr3_4:72299136-72299155 | None:intergenic | 30.0% |
| !! | ATTCTTGATTTGCAAGATCA+AGG | - | chr3_4:72299154-72299173 | Msa0519940:CDS | 30.0% |
| ! | GGAAATTGTTACCTTTGAAA+AGG | - | chr3_4:72299573-72299592 | Msa0519940:intron | 30.0% |
| CTTCAGAAACTTGTATTACA+TGG | - | chr3_4:72299662-72299681 | Msa0519940:intron | 30.0% | |
| ! | TATTAGAAGTACATGCCTCA+GGG | + | chr3_4:72296416-72296435 | None:intergenic | 35.0% |
| AGTGTGGTATACTGAATAGT+GGG | + | chr3_4:72296439-72296458 | None:intergenic | 35.0% | |
| TAGTGTGGTATACTGAATAG+TGG | + | chr3_4:72296440-72296459 | None:intergenic | 35.0% | |
| TAACAAAACGCAAACACGAA+TGG | + | chr3_4:72296533-72296552 | None:intergenic | 35.0% | |
| !! | AGAGCATTGGATTTGATTGT+AGG | - | chr3_4:72296582-72296601 | Msa0519940:CDS | 35.0% |
| ! | CAAACTCATAACTTGTGTAG+TGG | - | chr3_4:72296729-72296748 | Msa0519940:CDS | 35.0% |
| ! | TATGATGTTTTCATCGTCAG+TGG | + | chr3_4:72296880-72296899 | None:intergenic | 35.0% |
| ! | ACTGCTTTAGTTCGGATATT+TGG | - | chr3_4:72297101-72297120 | Msa0519940:CDS | 35.0% |
| ! | CTGCTTTAGTTCGGATATTT+GGG | - | chr3_4:72297102-72297121 | Msa0519940:CDS | 35.0% |
| ATGAGATGGAGATACTAACT+TGG | + | chr3_4:72297207-72297226 | None:intergenic | 35.0% | |
| TTGAAGGGGAATCATTTAGA+AGG | + | chr3_4:72297467-72297486 | None:intergenic | 35.0% | |
| !!! | GTATTGCAGAATGTTGCTTT+TGG | - | chr3_4:72297737-72297756 | Msa0519940:intron | 35.0% |
| CTCAAAGTACAATTACCAAG+AGG | + | chr3_4:72297815-72297834 | None:intergenic | 35.0% | |
| GGTAATTGTACTTTGAGCAT+CGG | - | chr3_4:72297818-72297837 | Msa0519940:intron | 35.0% | |
| ATTAAGTCAACACCAGAAAC+TGG | + | chr3_4:72298190-72298209 | None:intergenic | 35.0% | |
| !! | AGTTTCTGGTGTTGACTTAA+TGG | - | chr3_4:72298189-72298208 | Msa0519940:CDS | 35.0% |
| !!! | CATTTTAACTGGGCTGTATT+TGG | - | chr3_4:72298707-72298726 | Msa0519940:CDS | 35.0% |
| ! | GTAATGAGTTGAAGTGGTAT+TGG | - | chr3_4:72298729-72298748 | Msa0519940:CDS | 35.0% |
| AAGTACAAGATAGACATTCG+CGG | - | chr3_4:72298815-72298834 | Msa0519940:intron | 35.0% | |
| ! | ATAAGCCAGTTAAGCGATTT+TGG | + | chr3_4:72298922-72298941 | None:intergenic | 35.0% |
| TTATCAAGACAGACTAGGTA+AGG | - | chr3_4:72299006-72299025 | Msa0519940:CDS | 35.0% | |
| ACAGACTAGGTAAGGATATA+AGG | - | chr3_4:72299014-72299033 | Msa0519940:CDS | 35.0% | |
| CAGACTAGGTAAGGATATAA+GGG | - | chr3_4:72299015-72299034 | Msa0519940:CDS | 35.0% | |
| TCCACTAATGAATATGTTCG+AGG | - | chr3_4:72299304-72299323 | Msa0519940:CDS | 35.0% | |
| !! | TGTTGATGGTGTAATGCTAT+GGG | - | chr3_4:72299372-72299391 | Msa0519940:intron | 35.0% |
| AAGGTGAAATCAATGAAGCT+GGG | - | chr3_4:72299446-72299465 | Msa0519940:intron | 35.0% | |
| TCCTTGATCTTAAAGAAGAG+TGG | - | chr3_4:72299476-72299495 | Msa0519940:intron | 35.0% | |
| !! | ACCACTCTTCTTTAAGATCA+AGG | + | chr3_4:72299480-72299499 | None:intergenic | 35.0% |
| ! | ATTCAGTGGTTTGTACAATG+TGG | - | chr3_4:72299552-72299571 | Msa0519940:intron | 35.0% |
| ! | CTGGCAAATTACCTTTTCAA+AGG | + | chr3_4:72299587-72299606 | None:intergenic | 35.0% |
| ! | CAGACATTCGTTGTTGATAA+GGG | - | chr3_4:72299604-72299623 | Msa0519940:intron | 35.0% |
| !! | AGATTGATGGACTGTCATAT+TGG | - | chr3_4:72299762-72299781 | Msa0519940:CDS | 35.0% |
| ! | GTATTAGAAGTACATGCCTC+AGG | + | chr3_4:72296417-72296436 | None:intergenic | 40.0% |
| ! | TTTTGTTAAGCCGTTCCCTT+TGG | - | chr3_4:72296545-72296564 | Msa0519940:CDS | 40.0% |
| TATGTCCTACGATAGCCAAA+GGG | + | chr3_4:72296563-72296582 | None:intergenic | 40.0% | |
| TATCGTAGGACATAGAGCAT+TGG | - | chr3_4:72296569-72296588 | Msa0519940:CDS | 40.0% | |
| CATACTAAATCCTGAGTTCG+AGG | - | chr3_4:72296896-72296915 | Msa0519940:CDS | 40.0% | |
| CTCTTCCAGTCCAATTATTC+AGG | + | chr3_4:72296926-72296945 | None:intergenic | 40.0% | |
| ! | CTGAATAATTGGACTGGAAG+AGG | - | chr3_4:72296924-72296943 | Msa0519940:CDS | 40.0% |
| TACATGAGTCCATGGCAAAT+GGG | - | chr3_4:72296961-72296980 | Msa0519940:CDS | 40.0% | |
| ! | AAGGATTTTCCCATTTGCCA+TGG | + | chr3_4:72296973-72296992 | None:intergenic | 40.0% |
| GGGAAAATCCTTCCAAAATC+CGG | - | chr3_4:72296981-72297000 | Msa0519940:CDS | 40.0% | |
| GGAAAATCCTTCCAAAATCC+GGG | - | chr3_4:72296982-72297001 | Msa0519940:CDS | 40.0% | |
| GGAATTCAGCAAGAAATCAC+TGG | - | chr3_4:72297047-72297066 | Msa0519940:CDS | 40.0% | |
| AACTAAAGCAGTGACCTCAT+AGG | + | chr3_4:72297093-72297112 | None:intergenic | 40.0% | |
| ATGAGGTCACTGCTTTAGTT+CGG | - | chr3_4:72297093-72297112 | Msa0519940:CDS | 40.0% | |
| ATATACTGCTCTCGAAGATC+TGG | + | chr3_4:72297176-72297195 | None:intergenic | 40.0% | |
| GATCTTCGAGAGCAGTATAT+AGG | - | chr3_4:72297176-72297195 | Msa0519940:CDS | 40.0% | |
| GAATAATGACATGACTGCTG+TGG | - | chr3_4:72297248-72297267 | Msa0519940:CDS | 40.0% | |
| !! | GACTGCTGTGGTTATTTTCT+TGG | - | chr3_4:72297260-72297279 | Msa0519940:CDS | 40.0% |
| TTTGCGATACTAAAGTGTGC+AGG | - | chr3_4:72297404-72297423 | Msa0519940:CDS | 40.0% | |
| TGCAGGCAACAGATAAAGAT+TGG | - | chr3_4:72297421-72297440 | Msa0519940:CDS | 40.0% | |
| GCAGGCAACAGATAAAGATT+GGG | - | chr3_4:72297422-72297441 | Msa0519940:CDS | 40.0% | |
| TAAAGATTGGGCTCAAATGC+AGG | - | chr3_4:72297434-72297453 | Msa0519940:CDS | 40.0% | |
| AAAGATTGGGCTCAAATGCA+GGG | - | chr3_4:72297435-72297454 | Msa0519940:CDS | 40.0% | |
| AAAGCCTAACCTCAAAATCC+GGG | + | chr3_4:72297587-72297606 | None:intergenic | 40.0% | |
| GAAAGCCTAACCTCAAAATC+CGG | + | chr3_4:72297588-72297607 | None:intergenic | 40.0% | |
| !! | CTATGATGCCTTTTGTTGTG+TGG | - | chr3_4:72297677-72297696 | Msa0519940:intron | 40.0% |
| AGAATCGACCACACAACAAA+AGG | + | chr3_4:72297688-72297707 | None:intergenic | 40.0% | |
| AAGAATGTAACGTCCACTCA+GGG | + | chr3_4:72297903-72297922 | None:intergenic | 40.0% | |
| AGGCAATACCAACATTCTGA+GGG | + | chr3_4:72298042-72298061 | None:intergenic | 40.0% | |
| AAGGCAATACCAACATTCTG+AGG | + | chr3_4:72298043-72298062 | None:intergenic | 40.0% | |
| ! | GGTATTGCCTTTAGTGTTGA+CGG | - | chr3_4:72298052-72298071 | Msa0519940:CDS | 40.0% |
| TACATTCAAGGTCCAGTTTC+TGG | - | chr3_4:72298175-72298194 | Msa0519940:CDS | 40.0% | |
| ! | AATTTTTCCTGTCGATAGGC+AGG | - | chr3_4:72298225-72298244 | Msa0519940:CDS | 40.0% |
| CTATTGATGCACGATCCAAT+TGG | + | chr3_4:72298644-72298663 | None:intergenic | 40.0% | |
| TATTGGACAGAGCCACAAAA+AGG | - | chr3_4:72298746-72298765 | Msa0519940:CDS | 40.0% | |
| ATTGGACAGAGCCACAAAAA+GGG | - | chr3_4:72298747-72298766 | Msa0519940:CDS | 40.0% | |
| TCGACAGCAATGTTCAACAA+TGG | - | chr3_4:72298858-72298877 | Msa0519940:intron | 40.0% | |
| CGACAGCAATGTTCAACAAT+GGG | - | chr3_4:72298859-72298878 | Msa0519940:intron | 40.0% | |
| TTCACAAATAGGGTAGCAGA+TGG | + | chr3_4:72299073-72299092 | None:intergenic | 40.0% | |
| TCGAGTGCAGAACAAACAAT+AGG | + | chr3_4:72299232-72299251 | None:intergenic | 40.0% | |
| TTGTTCTGCACTCGATAAGT+TGG | - | chr3_4:72299237-72299256 | Msa0519940:CDS | 40.0% | |
| CTACTCTTGGTCAACCAATA+TGG | - | chr3_4:72299260-72299279 | Msa0519940:CDS | 40.0% | |
| TCAAGCTCGGTAAACCATAT+TGG | + | chr3_4:72299277-72299296 | None:intergenic | 40.0% | |
| GCCTCGAACATATTCATTAG+TGG | + | chr3_4:72299308-72299327 | None:intergenic | 40.0% | |
| ATATGTTCGAGGCGATGATT+TGG | - | chr3_4:72299315-72299334 | Msa0519940:CDS | 40.0% | |
| !! | CTGTTGATGGTGTAATGCTA+TGG | - | chr3_4:72299371-72299390 | Msa0519940:intron | 40.0% |
| !! | GTTGATGGTGTAATGCTATG+GGG | - | chr3_4:72299373-72299392 | Msa0519940:intron | 40.0% |
| ! | TGTAATGCTATGGGGCTTTT+GGG | - | chr3_4:72299381-72299400 | Msa0519940:intron | 40.0% |
| GAAGGTGAAATCAATGAAGC+TGG | - | chr3_4:72299445-72299464 | Msa0519940:intron | 40.0% | |
| CCTTATCAACAACGAATGTC+TGG | + | chr3_4:72299606-72299625 | None:intergenic | 40.0% | |
| CCAGACATTCGTTGTTGATA+AGG | - | chr3_4:72299603-72299622 | Msa0519940:intron | 40.0% | |
| ! | ACATTCGTTGTTGATAAGGG+CGG | - | chr3_4:72299607-72299626 | Msa0519940:intron | 40.0% |
| AACTCGGAGATGATCAATGC+TGG | - | chr3_4:72296384-72296403 | Msa0519940:three_prime_UTR | 45.0% | |
| CTATGTCCTACGATAGCCAA+AGG | + | chr3_4:72296564-72296583 | None:intergenic | 45.0% | |
| CTAAATCCTGAGTTCGAGGA+TGG | - | chr3_4:72296900-72296919 | Msa0519940:CDS | 45.0% | |
| TCGAGGATGGCCTGAATAAT+TGG | - | chr3_4:72296913-72296932 | Msa0519940:CDS | 45.0% | |
| GATGGCCTGAATAATTGGAC+TGG | - | chr3_4:72296918-72296937 | Msa0519940:CDS | 45.0% | |
| GATTGCAGTACATGAGTCCA+TGG | - | chr3_4:72296953-72296972 | Msa0519940:CDS | 45.0% | |
| GTACATGAGTCCATGGCAAA+TGG | - | chr3_4:72296960-72296979 | Msa0519940:CDS | 45.0% | |
| ! | AGAACTTCCCGGATTTTGGA+AGG | + | chr3_4:72296992-72297011 | None:intergenic | 45.0% |
| ! | GCAAAGAACTTCCCGGATTT+TGG | + | chr3_4:72296996-72297015 | None:intergenic | 45.0% |
| TGCAGATGCAAAGAACTTCC+CGG | + | chr3_4:72297003-72297022 | None:intergenic | 45.0% | |
| AAGCCTAACCTCAAAATCCG+GGG | + | chr3_4:72297586-72297605 | None:intergenic | 45.0% | |
| GAGAACAGCAATCTGGACAA+TGG | - | chr3_4:72297773-72297792 | Msa0519940:intron | 45.0% | |
| AATCTGGACAATGGCACCAA+CGG | - | chr3_4:72297782-72297801 | Msa0519940:intron | 45.0% | |
| !! | TGTACTTTGAGCATCGGAAC+TGG | - | chr3_4:72297824-72297843 | Msa0519940:intron | 45.0% |
| AGAATGTAACGTCCACTCAG+GGG | + | chr3_4:72297902-72297921 | None:intergenic | 45.0% | |
| CAAGAATGTAACGTCCACTC+AGG | + | chr3_4:72297904-72297923 | None:intergenic | 45.0% | |
| TAACCAATCGCACTCAAACC+TGG | - | chr3_4:72297924-72297943 | Msa0519940:CDS | 45.0% | |
| AATCGCACTCAAACCTGGAT+GGG | - | chr3_4:72297929-72297948 | Msa0519940:CDS | 45.0% | |
| ATCAAGTATCTGCTTGGGTC+AGG | - | chr3_4:72297996-72298015 | Msa0519940:CDS | 45.0% | |
| !! | CTTTAGTGTTGACGGCCAAT+GGG | - | chr3_4:72298060-72298079 | Msa0519940:CDS | 45.0% |
| GATTTCATGCCATCTGCTGT+CGG | + | chr3_4:72298110-72298129 | None:intergenic | 45.0% | |
| GACAGCAGATGGCATGAAAT+CGG | - | chr3_4:72298109-72298128 | Msa0519940:CDS | 45.0% | |
| !! | GGTGTTGACTTAATGGTTGC+TGG | - | chr3_4:72298196-72298215 | Msa0519940:CDS | 45.0% |
| TTTATGCGAGCAGACAGACA+AGG | - | chr3_4:72298261-72298280 | Msa0519940:CDS | 45.0% | |
| TTCGCGGACATTGTATCTTC+TGG | - | chr3_4:72298831-72298850 | Msa0519940:intron | 45.0% | |
| TCGCGGACATTGTATCTTCT+GGG | - | chr3_4:72298832-72298851 | Msa0519940:intron | 45.0% | |
| GCTGTCCAAAATCGCTTAAC+TGG | - | chr3_4:72298914-72298933 | Msa0519940:intron | 45.0% | |
| GGCTTATTGTCTCGCTACAA+AGG | - | chr3_4:72298935-72298954 | Msa0519940:intron | 45.0% | |
| TTTGCAAGATCAAGGTGCAC+CGG | - | chr3_4:72299162-72299181 | Msa0519940:CDS | 45.0% | |
| TGAATTCCTATTCCCCCAAC+CGG | + | chr3_4:72299184-72299203 | None:intergenic | 45.0% | |
| GTTGGGGGAATAGGAATTCA+AGG | - | chr3_4:72299184-72299203 | Msa0519940:CDS | 45.0% | |
| ! | AGGTCACATTGATAGTCCTG+TGG | - | chr3_4:72299204-72299223 | Msa0519940:CDS | 45.0% |
| ! | GGTCACATTGATAGTCCTGT+GGG | - | chr3_4:72299205-72299224 | Msa0519940:CDS | 45.0% |
| ! | GTCACATTGATAGTCCTGTG+GGG | - | chr3_4:72299206-72299225 | Msa0519940:CDS | 45.0% |
| ! | CTCGATAAGTTGGCTACTCT+TGG | - | chr3_4:72299247-72299266 | Msa0519940:CDS | 45.0% |
| AGTGGAAGACACATCAAGCT+CGG | + | chr3_4:72299290-72299309 | None:intergenic | 45.0% | |
| AGTTATGTTGCGCGAAGCTA+TGG | - | chr3_4:72299339-72299358 | Msa0519940:intron | 45.0% | |
| AGCATTACACCATCAACAGC+AGG | + | chr3_4:72299370-72299389 | None:intergenic | 45.0% | |
| ! | GTGTAATGCTATGGGGCTTT+TGG | - | chr3_4:72299380-72299399 | Msa0519940:intron | 45.0% |
| TCACCAAATGTGCATTGTCG+CGG | + | chr3_4:72299420-72299439 | None:intergenic | 45.0% | |
| ! | GCACATTTGGTGAATGCAGA+AGG | - | chr3_4:72299427-72299446 | Msa0519940:intron | 45.0% |
| GAGTGGTTATCTCACACTCA+TGG | - | chr3_4:72299493-72299512 | Msa0519940:intron | 45.0% | |
| ATGGCCATCTTGATGAGCAA+GGG | - | chr3_4:72299512-72299531 | Msa0519940:intron | 45.0% | |
| ATTCCCCTTGCTCATCAAGA+TGG | + | chr3_4:72299519-72299538 | None:intergenic | 45.0% | |
| AGCAAGGGGAATTCAACTTC+AGG | - | chr3_4:72299527-72299546 | Msa0519940:intron | 45.0% | |
| GCAAGGGGAATTCAACTTCA+GGG | - | chr3_4:72299528-72299547 | Msa0519940:intron | 45.0% | |
| CAAGGGGAATTCAACTTCAG+GGG | - | chr3_4:72299529-72299548 | Msa0519940:intron | 45.0% | |
| TTCAACTTCAGGGGATTCAG+TGG | - | chr3_4:72299538-72299557 | Msa0519940:intron | 45.0% | |
| ! | TAGAAGTACATGCCTCAGGG+AGG | + | chr3_4:72296413-72296432 | None:intergenic | 50.0% |
| CCTACGATAGCCAAAGGGAA+CGG | + | chr3_4:72296558-72296577 | None:intergenic | 50.0% | |
| CAACTGAACGCACACAAAGC+TGG | - | chr3_4:72297021-72297040 | Msa0519940:CDS | 50.0% | |
| GAACGCACACAAAGCTGGAA+TGG | - | chr3_4:72297026-72297045 | Msa0519940:CDS | 50.0% | |
| AAGAATGTCAGTGCCTCCAG+GGG | + | chr3_4:72297514-72297533 | None:intergenic | 50.0% | |
| GAAGAATGTCAGTGCCTCCA+GGG | + | chr3_4:72297515-72297534 | None:intergenic | 50.0% | |
| AGAAGAATGTCAGTGCCTCC+AGG | + | chr3_4:72297516-72297535 | None:intergenic | 50.0% | |
| AGCCTAACCTCAAAATCCGG+GGG | + | chr3_4:72297585-72297604 | None:intergenic | 50.0% | |
| ATCTGGACAATGGCACCAAC+GGG | - | chr3_4:72297783-72297802 | Msa0519940:intron | 50.0% | |
| ACCGCGTGTAATTCCACCAA+TGG | - | chr3_4:72297850-72297869 | Msa0519940:intron | 50.0% | |
| GCCATTGGTGGAATTACACG+CGG | + | chr3_4:72297854-72297873 | None:intergenic | 50.0% | |
| AGAGAGTCTCTTGCCATTGG+TGG | + | chr3_4:72297866-72297885 | None:intergenic | 50.0% | |
| CCAAGAGAGTCTCTTGCCAT+TGG | + | chr3_4:72297869-72297888 | None:intergenic | 50.0% | |
| CCAATGGCAAGAGACTCTCT+TGG | - | chr3_4:72297866-72297885 | Msa0519940:intron | 50.0% | |
| CATCCAGGTTTGAGTGCGAT+TGG | + | chr3_4:72297930-72297949 | None:intergenic | 50.0% | |
| CAATCGCACTCAAACCTGGA+TGG | - | chr3_4:72297928-72297947 | Msa0519940:CDS | 50.0% | |
| TTCTCAGTGATCGCCTGAGA+AGG | + | chr3_4:72297956-72297975 | None:intergenic | 50.0% | |
| GTATCTGCTTGGGTCAGGAT+TGG | - | chr3_4:72298001-72298020 | Msa0519940:CDS | 50.0% | |
| !! | AGGATTGGTTCCGGATCACA+TGG | - | chr3_4:72298016-72298035 | Msa0519940:CDS | 50.0% |
| ! | ATTCTGAGGGCCATGTGATC+CGG | + | chr3_4:72298029-72298048 | None:intergenic | 50.0% |
| TCACATGGCCCTCAGAATGT+TGG | - | chr3_4:72298031-72298050 | Msa0519940:CDS | 50.0% | |
| CCATTGGCCGTCAACACTAA+AGG | + | chr3_4:72298062-72298081 | None:intergenic | 50.0% | |
| !! | CCTTTAGTGTTGACGGCCAA+TGG | - | chr3_4:72298059-72298078 | Msa0519940:CDS | 50.0% |
| AGCAGATGGCATGAAATCGG+TGG | - | chr3_4:72298112-72298131 | Msa0519940:CDS | 50.0% | |
| !! | AAGATCAAGGTGCACCGGTT+GGG | - | chr3_4:72299167-72299186 | Msa0519940:CDS | 50.0% |
| GAACAAACAATAGGCCCCAC+AGG | + | chr3_4:72299223-72299242 | None:intergenic | 50.0% | |
| ATGGCACATCCTGCTGTTGA+TGG | - | chr3_4:72299358-72299377 | Msa0519940:intron | 50.0% | |
| CATGGCCATCTTGATGAGCA+AGG | - | chr3_4:72299511-72299530 | Msa0519940:intron | 50.0% | |
| TGGCCATCTTGATGAGCAAG+GGG | - | chr3_4:72299513-72299532 | Msa0519940:intron | 50.0% | |
| TGATAAGGGCGGCTCTTCAT+TGG | - | chr3_4:72299618-72299637 | Msa0519940:intron | 50.0% | |
| CAATGCTGGAAACCTCCCTG+AGG | - | chr3_4:72296398-72296417 | Msa0519940:three_prime_UTR | 55.0% | |
| CCGTTCCCTTTGGCTATCGT+AGG | - | chr3_4:72296555-72296574 | Msa0519940:CDS | 55.0% | |
| TTCAGGCCATCCTCGAACTC+AGG | + | chr3_4:72296909-72296928 | None:intergenic | 55.0% | |
| GTTTATTTGGAAGGCCCCCC+TGG | - | chr3_4:72297495-72297514 | Msa0519940:CDS | 55.0% | |
| AGAATGTCAGTGCCTCCAGG+GGG | + | chr3_4:72297513-72297532 | None:intergenic | 55.0% | |
| !! | TCAAAATCCGGGGGTGTCGA+AGG | + | chr3_4:72297576-72297595 | None:intergenic | 55.0% |
| ! | TTCGACACCCCCGGATTTTG+AGG | - | chr3_4:72297575-72297594 | Msa0519940:CDS | 55.0% |
| !!! | CACCCCCGGATTTTGAGGTT+AGG | - | chr3_4:72297580-72297599 | Msa0519940:CDS | 55.0% |
| AACCTGGATGGGTCCTTCTC+AGG | - | chr3_4:72297940-72297959 | Msa0519940:CDS | 55.0% | |
| !! | GCTTGGGTCAGGATTGGTTC+CGG | - | chr3_4:72298007-72298026 | Msa0519940:CDS | 55.0% |
| AACTTGGGTCTGTCCTCCGT+TGG | + | chr3_4:72298086-72298105 | None:intergenic | 55.0% | |
| CCATCTGCTGTCGGCAACTT+GGG | + | chr3_4:72298101-72298120 | None:intergenic | 55.0% | |
| TTCCTGTCGATAGGCAGGCA+AGG | - | chr3_4:72298230-72298249 | Msa0519940:CDS | 55.0% | |
| AACCTTGCCTGCCTATCGAC+AGG | + | chr3_4:72298235-72298254 | None:intergenic | 55.0% | |
| GGGTAGCAGATGGATCTAGC+TGG | + | chr3_4:72299063-72299082 | None:intergenic | 55.0% | |
| ! | CAAGATCAAGGTGCACCGGT+TGG | - | chr3_4:72299166-72299185 | Msa0519940:CDS | 55.0% |
| !! | AGATCAAGGTGCACCGGTTG+GGG | - | chr3_4:72299168-72299187 | Msa0519940:CDS | 55.0% |
| GAGCCGCGACAATGCACATT+TGG | - | chr3_4:72299414-72299433 | Msa0519940:intron | 55.0% | |
| GCAGCGCAAGCTTGCCTATG+AGG | - | chr3_4:72297076-72297095 | Msa0519940:CDS | 60.0% | |
| TATTTGGAAGGCCCCCCTGG+AGG | - | chr3_4:72297498-72297517 | Msa0519940:CDS | 60.0% | |
| GAATGTCAGTGCCTCCAGGG+GGG | + | chr3_4:72297512-72297531 | None:intergenic | 60.0% | |
| ATCACCACCTTCGACACCCC+CGG | - | chr3_4:72297566-72297585 | Msa0519940:CDS | 60.0% | |
| !! | AAATCCGGGGGTGTCGAAGG+TGG | + | chr3_4:72297573-72297592 | None:intergenic | 60.0% |
| TGGACAATGGCACCAACGGG+TGG | - | chr3_4:72297786-72297805 | Msa0519940:intron | 60.0% | |
| ACCAACGGGTGGTCTCCTCT+TGG | - | chr3_4:72297797-72297816 | Msa0519940:intron | 60.0% | |
| ACCAAGAGGAGACCACCCGT+TGG | + | chr3_4:72297801-72297820 | None:intergenic | 60.0% | |
| GGTCCTCATGAACCCCTGAG+TGG | - | chr3_4:72297887-72297906 | Msa0519940:intron | 60.0% | |
| CGTCCACTCAGGGGTTCATG+AGG | + | chr3_4:72297893-72297912 | None:intergenic | 60.0% | |
| GTTGACGGCCAATGGGCCAA+CGG | - | chr3_4:72298067-72298086 | Msa0519940:CDS | 60.0% | |
| TCTGTCCTCCGTTGGCCCAT+TGG | + | chr3_4:72298078-72298097 | None:intergenic | 60.0% | |
| CCCAAGTTGCCGACAGCAGA+TGG | - | chr3_4:72298098-72298117 | Msa0519940:CDS | 60.0% | |
| GCCATCTGCTGTCGGCAACT+TGG | + | chr3_4:72298102-72298121 | None:intergenic | 60.0% | |
| !! | GATCAAGGTGCACCGGTTGG+GGG | - | chr3_4:72299169-72299188 | Msa0519940:CDS | 60.0% |
| CGCCTGAGAAGGACCCATCC+AGG | + | chr3_4:72297945-72297964 | None:intergenic | 65.0% | |
| !! | GGTGCACCGGTTGGGGGAAT+AGG | - | chr3_4:72299175-72299194 | Msa0519940:CDS | 65.0% |
| GACGGCCAATGGGCCAACGG+AGG | - | chr3_4:72298070-72298089 | Msa0519940:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 72296378 | 72299820 | 72296378 | ID=Msa0519940;Name=Msa0519940 |
| chr3_4 | mRNA | 72296378 | 72299820 | 72296378 | ID=Msa0519940-mRNA-1;Parent=Msa0519940;Name=Msa0519940-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0.5|0.4|1|1|1|5|160|748 |
| chr3_4 | exon | 72296378 | 72297647 | 72296378 | ID=Msa0519940-mRNA-1:exon:19956;Parent=Msa0519940-mRNA-1 |
| chr3_4 | exon | 72297916 | 72298452 | 72297916 | ID=Msa0519940-mRNA-1:exon:19955;Parent=Msa0519940-mRNA-1 |
| chr3_4 | exon | 72298602 | 72298772 | 72298602 | ID=Msa0519940-mRNA-1:exon:19954;Parent=Msa0519940-mRNA-1 |
| chr3_4 | exon | 72298987 | 72299346 | 72298987 | ID=Msa0519940-mRNA-1:exon:19953;Parent=Msa0519940-mRNA-1 |
| chr3_4 | exon | 72299752 | 72299820 | 72299752 | ID=Msa0519940-mRNA-1:exon:19952;Parent=Msa0519940-mRNA-1 |
| chr3_4 | CDS | 72299752 | 72299820 | 72299752 | ID=Msa0519940-mRNA-1:cds;Parent=Msa0519940-mRNA-1 |
| chr3_4 | CDS | 72298987 | 72299346 | 72298987 | ID=Msa0519940-mRNA-1:cds;Parent=Msa0519940-mRNA-1 |
| chr3_4 | CDS | 72298602 | 72298772 | 72298602 | ID=Msa0519940-mRNA-1:cds;Parent=Msa0519940-mRNA-1 |
| chr3_4 | CDS | 72297916 | 72298452 | 72297916 | ID=Msa0519940-mRNA-1:cds;Parent=Msa0519940-mRNA-1 |
| chr3_4 | CDS | 72296538 | 72297647 | 72296538 | ID=Msa0519940-mRNA-1:cds;Parent=Msa0519940-mRNA-1 |
| chr3_4 | three_prime_UTR | 72296378 | 72296537 | 72296378 | ID=Msa0519940-mRNA-1:three_prime_utr;Parent=Msa0519940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
