Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476050 | XP_013461832.1 | 96.128 | 749 | 19 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476050 | sp|A0A1P8AWH8|XYN1_ARATH | 69.577 | 733 | 218 | 4 | 21 | 748 | 210 | 942 | 0.0 | 1093 |
| Msa0476050 | sp|A0A1P8AWH8|XYN1_ARATH | 28.779 | 344 | 213 | 8 | 31 | 361 | 51 | 375 | 1.63e-32 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476050 | A0A072V240 | 96.128 | 749 | 19 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1497 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140640 | Msa0476050 | 0.918222 | 2.032276e-86 | -8.615850e-47 |
| Msa0381450 | Msa0476050 | 0.989446 | 3.710141e-178 | -8.615850e-47 |
| Msa0476050 | Msa0519940 | 0.911700 | 4.520018e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476050 | MtrunA17_Chr3g0135341 | 96.128 | 749 | 19 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1497 |
| Msa0476050 | MtrunA17_Chr1g0151951 | 79.363 | 722 | 146 | 2 | 30 | 748 | 209 | 930 | 0.0 | 1227 |
| Msa0476050 | MtrunA17_Chr1g0151951 | 30.792 | 341 | 211 | 7 | 33 | 361 | 38 | 365 | 4.15e-34 | 140 |
| Msa0476050 | MtrunA17_Chr3g0145541 | 33.588 | 524 | 310 | 15 | 249 | 748 | 50 | 559 | 4.68e-77 | 258 |
| Msa0476050 | MtrunA17_Chr5g0421191 | 31.130 | 469 | 277 | 14 | 208 | 663 | 43 | 478 | 7.50e-64 | 223 |
| Msa0476050 | MtrunA17_Chr1g0207211 | 28.440 | 545 | 338 | 14 | 197 | 722 | 41 | 552 | 1.25e-62 | 220 |
| Msa0476050 | MtrunA17_Chr7g0223191 | 29.135 | 532 | 323 | 15 | 208 | 722 | 17 | 511 | 1.49e-61 | 216 |
| Msa0476050 | MtrunA17_Chr4g0037551 | 31.906 | 467 | 276 | 14 | 208 | 663 | 46 | 481 | 4.48e-61 | 215 |
| Msa0476050 | MtrunA17_Chr1g0207241 | 29.873 | 472 | 296 | 12 | 200 | 661 | 50 | 496 | 2.41e-60 | 214 |
| Msa0476050 | MtrunA17_Chr1g0207201 | 31.362 | 389 | 250 | 9 | 282 | 660 | 1 | 382 | 4.89e-56 | 199 |
| Msa0476050 | MtrunA17_Chr1g0207231 | 28.319 | 452 | 305 | 11 | 282 | 722 | 1 | 444 | 2.47e-54 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0476050 | AT1G58370.1 | 69.577 | 733 | 218 | 4 | 21 | 748 | 182 | 914 | 0.0 | 1094 |
| Msa0476050 | AT1G58370.1 | 28.779 | 344 | 213 | 8 | 31 | 361 | 23 | 347 | 1.66e-33 | 139 |
| Msa0476050 | AT1G58370.2 | 69.577 | 733 | 218 | 4 | 21 | 748 | 210 | 942 | 0.0 | 1093 |
| Msa0476050 | AT1G58370.2 | 28.779 | 344 | 213 | 8 | 31 | 361 | 51 | 375 | 1.66e-33 | 139 |
| Msa0476050 | AT4G08160.1 | 66.310 | 748 | 239 | 6 | 14 | 748 | 2 | 749 | 0.0 | 1041 |
| Msa0476050 | AT1G10050.2 | 61.434 | 739 | 276 | 6 | 16 | 748 | 328 | 1063 | 0.0 | 957 |
| Msa0476050 | AT1G10050.2 | 25.294 | 340 | 225 | 7 | 35 | 361 | 3 | 326 | 3.71e-29 | 125 |
| Msa0476050 | AT1G10050.1 | 61.434 | 739 | 276 | 6 | 16 | 748 | 328 | 1063 | 0.0 | 957 |
| Msa0476050 | AT1G10050.1 | 25.294 | 340 | 225 | 7 | 35 | 361 | 3 | 326 | 3.71e-29 | 125 |
| Msa0476050 | AT1G10050.3 | 61.434 | 739 | 276 | 6 | 16 | 748 | 360 | 1095 | 0.0 | 957 |
| Msa0476050 | AT1G10050.3 | 25.294 | 340 | 225 | 7 | 35 | 361 | 35 | 358 | 4.19e-29 | 125 |
| Msa0476050 | AT4G08160.2 | 66.921 | 656 | 204 | 6 | 14 | 656 | 2 | 657 | 0.0 | 915 |
| Msa0476050 | AT4G38650.1 | 34.328 | 469 | 287 | 10 | 284 | 738 | 91 | 552 | 6.03e-74 | 250 |
| Msa0476050 | AT4G33830.1 | 29.679 | 529 | 326 | 14 | 208 | 722 | 47 | 543 | 2.67e-67 | 233 |
| Msa0476050 | AT4G33840.1 | 28.679 | 530 | 331 | 12 | 208 | 722 | 46 | 543 | 2.69e-66 | 230 |
| Msa0476050 | AT4G33860.1 | 28.947 | 532 | 329 | 13 | 208 | 723 | 46 | 544 | 4.96e-61 | 216 |
| Msa0476050 | AT4G38300.1 | 43.359 | 256 | 131 | 4 | 381 | 632 | 12 | 257 | 7.21e-60 | 204 |
| Msa0476050 | AT2G14690.1 | 31.011 | 445 | 277 | 16 | 284 | 707 | 82 | 517 | 3.10e-52 | 191 |
| Msa0476050 | AT4G33810.1 | 28.747 | 407 | 269 | 12 | 269 | 661 | 33 | 432 | 2.42e-51 | 187 |
| Msa0476050 | AT4G33810.5 | 28.747 | 407 | 269 | 12 | 269 | 661 | 33 | 432 | 2.42e-51 | 187 |
| Msa0476050 | AT4G33810.2 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.35e-51 | 188 |
| Msa0476050 | AT4G33810.3 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.35e-51 | 188 |
| Msa0476050 | AT4G33810.4 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.35e-51 | 188 |
| Msa0476050 | AT4G33820.1 | 29.049 | 389 | 259 | 10 | 284 | 661 | 90 | 472 | 7.65e-49 | 181 |
Find 188 sgRNAs with CRISPR-Local
Find 253 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCTTTAGTTCGGATATT+TGG | 0.103053 | 3_3:+79773364 | Msa0476050:CDS |
| GTGTAATGCTATGGGGATTT+TGG | 0.150700 | 3_3:+79775643 | Msa0476050:CDS |
| TACATTCAAGGTCCAGTTTC+TGG | 0.151513 | 3_3:+79774438 | Msa0476050:CDS |
| TTCAAAAGTAGTTGTTTATT+TGG | 0.166485 | 3_3:+79773745 | Msa0476050:CDS |
| ATTGATGGACTTTGTAATAT+TGG | 0.179622 | 3_3:+79776026 | Msa0476050:three_prime_UTR |
| ATAAGCCAGTTAAGCGATTT+TGG | 0.179789 | 3_3:-79775182 | None:intergenic |
| GCAAAGAACTTCCCGGATTT+TGG | 0.200315 | 3_3:-79773256 | None:intergenic |
| CATGATAATCATTCACAAAT+AGG | 0.218933 | 3_3:-79775344 | None:intergenic |
| ACAGACTAGGTAAGGATATA+AGG | 0.260677 | 3_3:+79775277 | Msa0476050:CDS |
| AGTTTCTGGTGTTGACTTAA+TGG | 0.273413 | 3_3:+79774452 | Msa0476050:CDS |
| CTACTCTTGGTCAACCAATA+TGG | 0.285540 | 3_3:+79775523 | Msa0476050:CDS |
| CTCTTCCAGTCCAATTATTC+AGG | 0.294811 | 3_3:-79773186 | None:intergenic |
| CTGCTTTAGTTCGGATATTT+GGG | 0.297447 | 3_3:+79773365 | Msa0476050:CDS |
| GGTGTTGACTTAATGGTTGC+TGG | 0.301216 | 3_3:+79774459 | Msa0476050:CDS |
| TTCGCGGACATTGTATCTTC+TGG | 0.301509 | 3_3:+79775094 | Msa0476050:CDS |
| TCGAGGATGGCCTGAATAAT+TGG | 0.308205 | 3_3:+79773176 | Msa0476050:CDS |
| AAAAGGGAATTTCAACTATA+AGG | 0.329649 | 3_3:+79775026 | Msa0476050:CDS |
| AGAAATAAAATAATATTTGT+TGG | 0.340449 | 3_3:+79776052 | Msa0476050:three_prime_UTR |
| TAATGTAACGAAAAGATTGA+TGG | 0.346421 | 3_3:+79776011 | Msa0476050:three_prime_UTR |
| TCAATCGATTTGTAAGCTTC+AGG | 0.365194 | 3_3:+79775909 | Msa0476050:exon |
| CCAGACATTCGTTGTTGATA+AGG | 0.367235 | 3_3:+79775866 | Msa0476050:CDS |
| GGGAAAATCCTTCCAAAATC+CGG | 0.368365 | 3_3:+79773244 | Msa0476050:CDS |
| GCTGTCCAAAATCGCTTAAC+TGG | 0.369480 | 3_3:+79775177 | Msa0476050:CDS |
| AGCAAGGGGAATTCAACTTC+AGG | 0.373704 | 3_3:+79775790 | Msa0476050:CDS |
| GCCATCTGCTGTCGGCAACT+TGG | 0.380256 | 3_3:-79774362 | None:intergenic |
| CAGACATTCGTTGTTGATAA+GGG | 0.382967 | 3_3:+79775867 | Msa0476050:CDS |
| GAGCCGCGACAATGCACATT+TGG | 0.384503 | 3_3:+79775677 | Msa0476050:CDS |
| TATTGGACAGAGCCACAAAA+AGG | 0.390280 | 3_3:+79775009 | Msa0476050:CDS |
| ATTAAGTCAACACCAGAAAC+TGG | 0.390421 | 3_3:-79774450 | None:intergenic |
| GTATTGCAGAATGTTGCTTT+TGG | 0.399531 | 3_3:+79774000 | Msa0476050:intron |
| GAAAGCCTAACCTCAAAATC+CGG | 0.403044 | 3_3:-79773848 | None:intergenic |
| GTAATGAGTTGAAGTGGTAT+TGG | 0.405250 | 3_3:+79774992 | Msa0476050:CDS |
| CCTTTAGTGTTGACGGCCAA+TGG | 0.409839 | 3_3:+79774322 | Msa0476050:CDS |
| TGCAGGCAACAGATAAAGAT+TGG | 0.414707 | 3_3:+79773684 | Msa0476050:intron |
| AAGATCAAGGTGCACCGGTT+GGG | 0.415147 | 3_3:+79775430 | Msa0476050:CDS |
| GACAATAAAATAGGAATTCA+AGG | 0.417030 | 3_3:-79776139 | None:intergenic |
| ATGATAATCATTCACAAATA+GGG | 0.417257 | 3_3:-79775343 | None:intergenic |
| CTGTTGATGGTGTAATGCTA+TGG | 0.418517 | 3_3:+79775634 | Msa0476050:CDS |
| ATATGTTCGAGGCGATGATT+TGG | 0.419778 | 3_3:+79775578 | Msa0476050:CDS |
| TCAAGCTCGGTAAACCATAT+TGG | 0.421495 | 3_3:-79775537 | None:intergenic |
| ACCACTCTTCTTTAAGATCA+AGG | 0.422719 | 3_3:-79775740 | None:intergenic |
| AGATCAAGGTGCACCGGTTG+GGG | 0.422890 | 3_3:+79775431 | Msa0476050:CDS |
| TATAATTGAGAACAGCAATC+TGG | 0.426399 | 3_3:+79774029 | Msa0476050:CDS |
| GCTTGGGTCAGGATTGGTTC+CGG | 0.428334 | 3_3:+79774270 | Msa0476050:CDS |
| TGATAAGGGTAACTCTTCAT+TGG | 0.428642 | 3_3:+79775881 | Msa0476050:CDS |
| CTTCAGGAACTTGTATTACA+TGG | 0.429240 | 3_3:+79775925 | Msa0476050:three_prime_UTR |
| GATCTTCGAGAGCAGTATAT+AGG | 0.430612 | 3_3:+79773439 | Msa0476050:CDS |
| CTCGATAAGTTGGCTACTCT+TGG | 0.431121 | 3_3:+79775510 | Msa0476050:CDS |
| TCGCGGACATTGTATCTTCT+GGG | 0.432457 | 3_3:+79775095 | Msa0476050:CDS |
| TAAACCGGTTGCTCACTTGC+TGG | 0.432868 | 3_3:+79776084 | Msa0476050:three_prime_UTR |
| TAAAGATTGGGCTCAAATGC+AGG | 0.434482 | 3_3:+79773697 | Msa0476050:CDS |
| ATATACTGCTCTCGAAGATC+TGG | 0.434721 | 3_3:-79773436 | None:intergenic |
| TGCAGATGCAAAGAACTTCC+CGG | 0.438822 | 3_3:-79773263 | None:intergenic |
| ATTCTTGATTTACAAGATCA+AGG | 0.439129 | 3_3:+79775417 | Msa0476050:CDS |
| AACCTGGATGGGTCCTTCTC+AGG | 0.439305 | 3_3:+79774203 | Msa0476050:CDS |
| TCTGTCCTCCGTTGGCCCAT+TGG | 0.442065 | 3_3:-79774338 | None:intergenic |
| CCATCTGCTGTCGGCAACTT+GGG | 0.445406 | 3_3:-79774361 | None:intergenic |
| ATCAAGTATCTGCTTGGGTC+AGG | 0.452969 | 3_3:+79774259 | Msa0476050:CDS |
| CAACTGAACGCACACAAAGC+TGG | 0.453239 | 3_3:+79773284 | Msa0476050:CDS |
| AAAGTAGTTGTTTATTTGGA+AGG | 0.453467 | 3_3:+79773749 | Msa0476050:CDS |
| GTACATGAGTCCATGGCAAA+TGG | 0.457411 | 3_3:+79773223 | Msa0476050:CDS |
| TAACATATCAAGTATCTGCT+TGG | 0.458399 | 3_3:+79774253 | Msa0476050:CDS |
| ATGGCACACCCTGCTGTTGA+TGG | 0.458413 | 3_3:+79775621 | Msa0476050:CDS |
| TAGTGTGGTATACTGAATAG+TGG | 0.459390 | 3_3:-79772700 | None:intergenic |
| CCTTATCAACAACGAATGTC+TGG | 0.460894 | 3_3:-79775866 | None:intergenic |
| TTCAGGCCATCCTCGAACTC+AGG | 0.461619 | 3_3:-79773169 | None:intergenic |
| TTAAAGTAACATCACGCTTA+CGG | 0.463167 | 3_3:-79774816 | None:intergenic |
| GAAGGTGAAATCAATGAAGC+TGG | 0.463874 | 3_3:+79775708 | Msa0476050:CDS |
| CAGACTAGGTAAGGATATAA+GGG | 0.465786 | 3_3:+79775278 | Msa0476050:CDS |
| ATTCTGAGGGCCATGTGATC+CGG | 0.465999 | 3_3:-79774289 | None:intergenic |
| GTATCTGCTTGGGTCAGGAT+TGG | 0.466467 | 3_3:+79774264 | Msa0476050:CDS |
| AACATATCAAGTATCTGCTT+GGG | 0.466505 | 3_3:+79774254 | Msa0476050:CDS |
| GCCTCGAACATATTCATTAG+TGG | 0.466710 | 3_3:-79775568 | None:intergenic |
| ATCTGGACAATGGCACCAAC+GGG | 0.468015 | 3_3:+79774046 | Msa0476050:CDS |
| TAACCAATCGCACTCAAACC+TGG | 0.473942 | 3_3:+79774187 | Msa0476050:CDS |
| CTTTAGTGTTGACGGCCAAT+GGG | 0.475195 | 3_3:+79774323 | Msa0476050:CDS |
| CTGAATAATTGGACTGGAAG+AGG | 0.476567 | 3_3:+79773187 | Msa0476050:CDS |
| GACAGCAGATGGCATGAAAT+CGG | 0.479030 | 3_3:+79774372 | Msa0476050:CDS |
| TCGAGTGCAGAACAAACAAT+AGG | 0.483133 | 3_3:-79775492 | None:intergenic |
| AACTTGGGTCTGTCCTCCGT+TGG | 0.487407 | 3_3:-79774346 | None:intergenic |
| TGTTGATGGTGTAATGCTAT+GGG | 0.487978 | 3_3:+79775635 | Msa0476050:CDS |
| ATGACCAGCAAGTGAGCAAC+CGG | 0.488019 | 3_3:-79776088 | None:intergenic |
| TGTACTTTGAGCATCGGAAC+TGG | 0.488314 | 3_3:+79774087 | Msa0476050:CDS |
| GGTATTGCCTTTAGTGTTGA+CGG | 0.489124 | 3_3:+79774315 | Msa0476050:CDS |
| AGAGAGTCTCTTGCCATTGG+TGG | 0.492478 | 3_3:-79774126 | None:intergenic |
| GGTTATGTTGCGCGAAGCTA+TGG | 0.493387 | 3_3:+79775602 | Msa0476050:CDS |
| ATGAGGTCACTGCTTTAGTT+CGG | 0.493909 | 3_3:+79773356 | Msa0476050:CDS |
| CATACTAAATCCTGAGTTCG+AGG | 0.497515 | 3_3:+79773159 | Msa0476050:CDS |
| AACTCGGAGATGATCAATGC+TGG | 0.498002 | 3_3:+79772647 | Msa0476050:CDS |
| AGAAGAATGTCAGTGCCTCC+AGG | 0.498736 | 3_3:-79773776 | None:intergenic |
| CGACAGCAATGTTCAACAAT+GGG | 0.503377 | 3_3:+79775122 | Msa0476050:CDS |
| GTATTAGAAGTACATGCCTC+AGG | 0.505454 | 3_3:-79772677 | None:intergenic |
| TTATCAAGACAGACTAGGTA+AGG | 0.507118 | 3_3:+79775269 | Msa0476050:CDS |
| CATCCAGGTTTGAGTGCGAT+TGG | 0.509313 | 3_3:-79774190 | None:intergenic |
| AACCTTGCCTGCCTATCGAC+AGG | 0.513887 | 3_3:-79774495 | None:intergenic |
| TCCACTAATGAATATGTTCG+AGG | 0.514151 | 3_3:+79775567 | Msa0476050:CDS |
| CCATTGGCCGTCAACACTAA+AGG | 0.515778 | 3_3:-79774322 | None:intergenic |
| TACATGAGTCCATGGCAAAT+GGG | 0.515874 | 3_3:+79773224 | Msa0476050:CDS |
| TCCTTGATCTTAAAGAAGAG+TGG | 0.516884 | 3_3:+79775739 | Msa0476050:CDS |
| AAAGCCTAACCTCAAAATCC+GGG | 0.520954 | 3_3:-79773847 | None:intergenic |
| CAAGATCAAGGTGCACCGGT+TGG | 0.524874 | 3_3:+79775429 | Msa0476050:CDS |
| GGTAATTGTACTTTGAGCAT+CGG | 0.525699 | 3_3:+79774081 | Msa0476050:CDS |
| TGTTCGAGGCGATGATTTGG+AGG | 0.526599 | 3_3:+79775581 | Msa0476050:CDS |
| CAAGAATGTAACGTCCACTC+AGG | 0.526881 | 3_3:-79774164 | None:intergenic |
| GGAATTCAGCAAGAAATCAC+TGG | 0.527804 | 3_3:+79773310 | Msa0476050:CDS |
| ACCAACGGGTGGTCTCCTCT+TGG | 0.529762 | 3_3:+79774060 | Msa0476050:CDS |
| CTATTGATGCACGATCCAAT+TGG | 0.531809 | 3_3:-79774904 | None:intergenic |
| AACTAAAGCAGTGACCTCAT+AGG | 0.532142 | 3_3:-79773353 | None:intergenic |
| CGCCTGAGAAGGACCCATCC+AGG | 0.534151 | 3_3:-79774205 | None:intergenic |
| GCAGCGCAAGCTTGCCTATG+AGG | 0.535069 | 3_3:+79773339 | Msa0476050:CDS |
| ATCACCACCTTCGACACCCC+CGG | 0.535089 | 3_3:+79773829 | Msa0476050:CDS |
| GAACGCACACAAAGCTGGAA+TGG | 0.536071 | 3_3:+79773289 | Msa0476050:CDS |
| AATGATTATCATGTTGAAGA+TGG | 0.536653 | 3_3:+79775354 | Msa0476050:CDS |
| GGAAAATCCTTCCAAAATCC+GGG | 0.538434 | 3_3:+79773245 | Msa0476050:CDS |
| TTGTTCTGCACTCGATAAGT+TGG | 0.539626 | 3_3:+79775500 | Msa0476050:CDS |
| AGCATTACACCATCAACAGC+AGG | 0.541258 | 3_3:-79775630 | None:intergenic |
| CCCAAGTTGCCGACAGCAGA+TGG | 0.542895 | 3_3:+79774361 | Msa0476050:CDS |
| GCAAGGGGAATTCAACTTCA+GGG | 0.545056 | 3_3:+79775791 | Msa0476050:CDS |
| CCAAGAGAGTCTCTTGCCAT+TGG | 0.545489 | 3_3:-79774129 | None:intergenic |
| ATGGTCATCTTGATGAGCAA+GGG | 0.549623 | 3_3:+79775775 | Msa0476050:CDS |
| CAATCGCACTCAAACCTGGA+TGG | 0.554026 | 3_3:+79774191 | Msa0476050:CDS |
| ATGAGATGGAGATACTAACT+TGG | 0.555489 | 3_3:-79773467 | None:intergenic |
| GCAGGCAACAGATAAAGATT+GGG | 0.558763 | 3_3:+79773685 | Msa0476050:intron |
| AATCTGGACAATGGCACCAA+CGG | 0.563221 | 3_3:+79774045 | Msa0476050:CDS |
| GGTCACATTGATAGTCCTGT+GGG | 0.563973 | 3_3:+79775468 | Msa0476050:CDS |
| TTCTCAGTGATCGCCTGAGA+AGG | 0.568117 | 3_3:-79774216 | None:intergenic |
| TTCAACTTCAGGGGATTCAG+TGG | 0.569777 | 3_3:+79775801 | Msa0476050:CDS |
| CTAAATCCTGAGTTCGAGGA+TGG | 0.569968 | 3_3:+79773163 | Msa0476050:CDS |
| GGCTTATTGTCTCGCTACAA+AGG | 0.570792 | 3_3:+79775198 | Msa0476050:CDS |
| GATGGCCTGAATAATTGGAC+TGG | 0.575465 | 3_3:+79773181 | Msa0476050:CDS |
| AGGATTGGTTCCGGATCACA+TGG | 0.576001 | 3_3:+79774279 | Msa0476050:CDS |
| GATTGCAGTACATGAGTCCA+TGG | 0.578636 | 3_3:+79773216 | Msa0476050:CDS |
| AAGGCAATACCAACATTCTG+AGG | 0.578941 | 3_3:-79774303 | None:intergenic |
| CATGGTCATCTTGATGAGCA+AGG | 0.581813 | 3_3:+79775774 | Msa0476050:CDS |
| AAGAATGTAACGTCCACTCA+GGG | 0.582309 | 3_3:-79774163 | None:intergenic |
| TCACATGGCCCTCAGAATGT+TGG | 0.584688 | 3_3:+79774294 | Msa0476050:CDS |
| AATCGCACTCAAACCTGGAT+GGG | 0.586825 | 3_3:+79774192 | Msa0476050:CDS |
| AAGAATGTCAGTGCCTCCAG+GGG | 0.587074 | 3_3:-79773774 | None:intergenic |
| TTCACAAATAGGGTAGCAGA+TGG | 0.588059 | 3_3:-79775333 | None:intergenic |
| ACCGCGTGTAATTCCACCAA+TGG | 0.588150 | 3_3:+79774113 | Msa0476050:CDS |
| AGTGTGGTATACTGAATAGT+GGG | 0.591386 | 3_3:-79772699 | None:intergenic |
| GTTGACGGCCAATGGGCCAA+CGG | 0.594155 | 3_3:+79774330 | Msa0476050:CDS |
| TTGAGAAACTATGGAAAACT+CGG | 0.594826 | 3_3:+79772631 | None:intergenic |
| TCGACAGCAATGTTCAACAA+TGG | 0.595009 | 3_3:+79775121 | Msa0476050:CDS |
| AAAGATTGGGCTCAAATGCA+GGG | 0.597935 | 3_3:+79773698 | Msa0476050:CDS |
| TTCCTGTCGATAGGCAGGCA+AGG | 0.599356 | 3_3:+79774493 | Msa0476050:CDS |
| AAGGTGAAATCAATGAAGCT+GGG | 0.599849 | 3_3:+79775709 | Msa0476050:CDS |
| GAACAAACAATAGGCCCCAC+AGG | 0.602172 | 3_3:-79775483 | None:intergenic |
| GGGTAGCAGATGGATCTAGC+TGG | 0.605427 | 3_3:-79775323 | None:intergenic |
| CAAGGGGAATTCAACTTCAG+GGG | 0.608694 | 3_3:+79775792 | Msa0476050:CDS |
| TCACCAAATGTGCATTGTCG+CGG | 0.609213 | 3_3:-79775680 | None:intergenic |
| CCAATGGCAAGAGACTCTCT+TGG | 0.609407 | 3_3:+79774129 | Msa0476050:CDS |
| AAGTACAAGATAGACATTCG+CGG | 0.610751 | 3_3:+79775078 | Msa0476050:CDS |
| TTTACAAGATCAAGGTGCAC+CGG | 0.614232 | 3_3:+79775425 | Msa0476050:CDS |
| AGGTCACATTGATAGTCCTG+TGG | 0.614882 | 3_3:+79775467 | Msa0476050:CDS |
| GAAGAATGTCAGTGCCTCCA+GGG | 0.615547 | 3_3:-79773775 | None:intergenic |
| CGTCCACTCAGGGGTTCATG+AGG | 0.617450 | 3_3:-79774153 | None:intergenic |
| GAGTGGTTATCTCACACTCA+TGG | 0.618320 | 3_3:+79775756 | Msa0476050:CDS |
| GTTAACAATGAAATGTTGCA+TGG | 0.621327 | 3_3:+79775240 | Msa0476050:CDS |
| TATTAGAAGTACATGCCTCA+GGG | 0.623116 | 3_3:-79772676 | None:intergenic |
| GATTTCATGCCATCTGCTGT+CGG | 0.625782 | 3_3:-79774370 | None:intergenic |
| TGGTCATCTTGATGAGCAAG+GGG | 0.626339 | 3_3:+79775776 | Msa0476050:CDS |
| ATTCAGTGGTTTGTACAATG+TGG | 0.629627 | 3_3:+79775815 | Msa0476050:CDS |
| AGTGGAAGACACATCAAGCT+CGG | 0.630111 | 3_3:-79775550 | None:intergenic |
| TATTTGTTTAACTTTCACAA+AGG | 0.638165 | 3_3:-79774869 | None:intergenic |
| TGGACAATGGCACCAACGGG+TGG | 0.640136 | 3_3:+79774049 | Msa0476050:CDS |
| GACGGCCAATGGGCCAACGG+AGG | 0.644893 | 3_3:+79774333 | Msa0476050:CDS |
| GCACATTTGGTGAATGCAGA+AGG | 0.645010 | 3_3:+79775690 | Msa0476050:CDS |
| TATTTGGTAATGAGTTGAAG+TGG | 0.647331 | 3_3:+79774986 | Msa0476050:CDS |
| AAGCCTAACCTCAAAATCCG+GGG | 0.648361 | 3_3:-79773846 | None:intergenic |
| AGGCAATACCAACATTCTGA+GGG | 0.648383 | 3_3:-79774302 | None:intergenic |
| GGTCCTCATGAACCCCTGAG+TGG | 0.651275 | 3_3:+79774150 | Msa0476050:CDS |
| GAGAACAGCAATCTGGACAA+TGG | 0.655529 | 3_3:+79774036 | Msa0476050:CDS |
| GATCAAGGTGCACCGGTTGG+GGG | 0.665415 | 3_3:+79775432 | Msa0476050:CDS |
| CTCAAAGTACAATTACCAAG+AGG | 0.666083 | 3_3:-79774075 | None:intergenic |
| GCCATTGGTGGAATTACACG+CGG | 0.667698 | 3_3:-79774114 | None:intergenic |
| AGCAGATGGCATGAAATCGG+TGG | 0.673951 | 3_3:+79774375 | Msa0476050:CDS |
| AGCCTAACCTCAAAATCCGG+GGG | 0.687022 | 3_3:-79773845 | None:intergenic |
| GCATTACACCATCAACAGCA+GGG | 0.689307 | 3_3:-79775629 | None:intergenic |
| ACCAAGAGGAGACCACCCGT+TGG | 0.691945 | 3_3:-79774061 | None:intergenic |
| GTTGATGGTGTAATGCTATG+GGG | 0.699342 | 3_3:+79775636 | Msa0476050:CDS |
| AGAATGTCAGTGCCTCCAGG+GGG | 0.711793 | 3_3:-79773773 | None:intergenic |
| TAGAAGTACATGCCTCAGGG+AGG | 0.715770 | 3_3:-79772673 | None:intergenic |
| GAATGTCAGTGCCTCCAGGG+GGG | 0.716647 | 3_3:-79773772 | None:intergenic |
| AGAATGTAACGTCCACTCAG+GGG | 0.726251 | 3_3:-79774162 | None:intergenic |
| CAATGCTGGAAACCTCCCTG+AGG | 0.737374 | 3_3:+79772661 | Msa0476050:CDS |
| TTTATGCGAGCAGACAGACA+AGG | 0.748258 | 3_3:+79774524 | Msa0476050:CDS |
| GTCACATTGATAGTCCTGTG+GGG | 0.751087 | 3_3:+79775469 | Msa0476050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATAAAATAATATTTGT+TGG | + | chr3_3:79776052-79776071 | Msa0476050:three_prime_UTR | 10.0% |
| !!! | GTTAAATATCTCTTATTTTT+TGG | + | chr3_3:79774693-79774712 | Msa0476050:intron | 15.0% |
| !!! | ATGTTACTTTAAAATTTTCT+GGG | + | chr3_3:79774827-79774846 | Msa0476050:CDS | 15.0% |
| !!! | GGTACATAATTATTTCATTT+TGG | - | chr3_3:79772775-79772794 | None:intergenic | 20.0% |
| !! | TAGAATATTTACAATCACTT+CGG | - | chr3_3:79772938-79772957 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCTTCTGAAATAA+GGG | - | chr3_3:79773106-79773125 | None:intergenic | 20.0% |
| !!! | AATAAACAACTACTTTTGAA+GGG | - | chr3_3:79773745-79773764 | None:intergenic | 20.0% |
| !!! | AAATAAACAACTACTTTTGA+AGG | - | chr3_3:79773746-79773765 | None:intergenic | 20.0% |
| !! | TTCAAAAGTAGTTGTTTATT+TGG | + | chr3_3:79773745-79773764 | Msa0476050:CDS | 20.0% |
| !! | ATGTAAACAAAAACATTAGA+TGG | - | chr3_3:79774423-79774442 | None:intergenic | 20.0% |
| !!! | AATGTTTTTGTTTACATTCA+AGG | + | chr3_3:79774426-79774445 | Msa0476050:CDS | 20.0% |
| !!! | ACGAATTATTGAATTTTCAT+TGG | + | chr3_3:79774564-79774583 | Msa0476050:intron | 20.0% |
| !!! | GATGTTACTTTAAAATTTTC+TGG | + | chr3_3:79774826-79774845 | Msa0476050:CDS | 20.0% |
| !!! | TATTTGTTTAACTTTCACAA+AGG | - | chr3_3:79774872-79774891 | None:intergenic | 20.0% |
| !! | GAATAAAAATGATTTACTGA+CGG | + | chr3_3:79775155-79775174 | Msa0476050:CDS | 20.0% |
| !! | ATGATAATCATTCACAAATA+GGG | - | chr3_3:79775346-79775365 | None:intergenic | 20.0% |
| ! | TAAACATATGAAAAGTAGTG+TGG | - | chr3_3:79772718-79772737 | None:intergenic | 25.0% |
| !!! | ATGTGTTTGATTTGTTAACA+AGG | + | chr3_3:79772737-79772756 | Msa0476050:intron | 25.0% |
| !!! | TGTGTTTGATTTGTTAACAA+GGG | + | chr3_3:79772738-79772757 | Msa0476050:intron | 25.0% |
| !!! | TTGTTTTCTTCTGAAATAAG+GGG | - | chr3_3:79773105-79773124 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTCTTCTGAAATA+AGG | - | chr3_3:79773107-79773126 | None:intergenic | 25.0% |
| ! | AGGTAAAGAAATAAATGAGA+TGG | - | chr3_3:79773484-79773503 | None:intergenic | 25.0% |
| ! | CATGTCATTATTCTATGTAT+AGG | - | chr3_3:79773504-79773523 | None:intergenic | 25.0% |
| ! | CATATCTTTAAATTGCTGAA+CGG | + | chr3_3:79773642-79773661 | Msa0476050:intron | 25.0% |
| !!! | ATAAACAACTACTTTTGAAG+GGG | - | chr3_3:79773744-79773763 | None:intergenic | 25.0% |
| ! | AAAGTAGTTGTTTATTTGGA+AGG | + | chr3_3:79773749-79773768 | Msa0476050:CDS | 25.0% |
| ! | AAAAGGGAATTTCAACTATA+AGG | + | chr3_3:79775026-79775045 | Msa0476050:CDS | 25.0% |
| ! | CATGATAATCATTCACAAAT+AGG | - | chr3_3:79775347-79775366 | None:intergenic | 25.0% |
| ! | AATGATTATCATGTTGAAGA+TGG | + | chr3_3:79775354-79775373 | Msa0476050:CDS | 25.0% |
| ! | ATTCTTGATTTACAAGATCA+AGG | + | chr3_3:79775417-79775436 | Msa0476050:CDS | 25.0% |
| !! | TTTTCGTTACATTAAGAACT+TGG | - | chr3_3:79776005-79776024 | None:intergenic | 25.0% |
| ! | TAATGTAACGAAAAGATTGA+TGG | + | chr3_3:79776011-79776030 | Msa0476050:three_prime_UTR | 25.0% |
| !!! | ATTGATGGACTTTGTAATAT+TGG | + | chr3_3:79776026-79776045 | Msa0476050:three_prime_UTR | 25.0% |
| !!! | TGTTGGTTTTGTTATTAAAC+CGG | + | chr3_3:79776069-79776088 | Msa0476050:three_prime_UTR | 25.0% |
| TCATGAAACAAAGAGAGAAA+TGG | - | chr3_3:79773042-79773061 | None:intergenic | 30.0% | |
| !!! | TGTTTTCTTCTGAAATAAGG+GGG | - | chr3_3:79773104-79773123 | None:intergenic | 30.0% |
| !! | TAAACAACTACTTTTGAAGG+GGG | - | chr3_3:79773743-79773762 | None:intergenic | 30.0% |
| TATAATTGAGAACAGCAATC+TGG | + | chr3_3:79774029-79774048 | Msa0476050:CDS | 30.0% | |
| TAACATATCAAGTATCTGCT+TGG | + | chr3_3:79774253-79774272 | Msa0476050:CDS | 30.0% | |
| AACATATCAAGTATCTGCTT+GGG | + | chr3_3:79774254-79774273 | Msa0476050:CDS | 30.0% | |
| ! | TTCAAATTTTTCCTGTCGAT+AGG | + | chr3_3:79774484-79774503 | Msa0476050:CDS | 30.0% |
| ! | ATTGAATTTTCATTGGACGT+TGG | + | chr3_3:79774571-79774590 | Msa0476050:intron | 30.0% |
| TTAAAGTAACATCACGCTTA+CGG | - | chr3_3:79774819-79774838 | None:intergenic | 30.0% | |
| !!! | TACTTTAAAATTTTCTGGGC+TGG | + | chr3_3:79774831-79774850 | Msa0476050:CDS | 30.0% |
| ! | ATACAGAACGATTTTCCAAT+TGG | + | chr3_3:79774889-79774908 | Msa0476050:CDS | 30.0% |
| !! | TCTTTGTGCAACATTTTAAC+TGG | + | chr3_3:79774959-79774978 | Msa0476050:CDS | 30.0% |
| !!! | CTTTGTGCAACATTTTAACT+GGG | + | chr3_3:79774960-79774979 | Msa0476050:CDS | 30.0% |
| !! | TATTTGGTAATGAGTTGAAG+TGG | + | chr3_3:79774986-79775005 | Msa0476050:CDS | 30.0% |
| ! | TAGTTGAAATTCCCTTTTTG+TGG | - | chr3_3:79775024-79775043 | None:intergenic | 30.0% |
| GTTAACAATGAAATGTTGCA+TGG | + | chr3_3:79775240-79775259 | Msa0476050:CDS | 30.0% | |
| ! | TCATTTTATCAAGACAGACT+AGG | + | chr3_3:79775264-79775283 | Msa0476050:CDS | 30.0% |
| ! | ATCTGTTGTGTGTATTTTTC+TGG | - | chr3_3:79775399-79775418 | None:intergenic | 30.0% |
| !!! | CTGGCAAATTACTTTTTCAA+AGG | - | chr3_3:79775850-79775869 | None:intergenic | 30.0% |
| ! | TATTAGAAGTACATGCCTCA+GGG | - | chr3_3:79772679-79772698 | None:intergenic | 35.0% |
| AGTGTGGTATACTGAATAGT+GGG | - | chr3_3:79772702-79772721 | None:intergenic | 35.0% | |
| TAGTGTGGTATACTGAATAG+TGG | - | chr3_3:79772703-79772722 | None:intergenic | 35.0% | |
| TAACAAAACGCAAACACGAA+TGG | - | chr3_3:79772796-79772815 | None:intergenic | 35.0% | |
| !! | AGAGCATTGGATTTGATTGT+AGG | + | chr3_3:79772845-79772864 | Msa0476050:intron | 35.0% |
| ! | CAAACTCATAACTTGTGTAG+TGG | + | chr3_3:79772992-79773011 | Msa0476050:intron | 35.0% |
| ! | TATGATGTTTTCATCGTCAG+TGG | - | chr3_3:79773143-79773162 | None:intergenic | 35.0% |
| ! | ACTGCTTTAGTTCGGATATT+TGG | + | chr3_3:79773364-79773383 | Msa0476050:CDS | 35.0% |
| ! | CTGCTTTAGTTCGGATATTT+GGG | + | chr3_3:79773365-79773384 | Msa0476050:CDS | 35.0% |
| ATGAGATGGAGATACTAACT+TGG | - | chr3_3:79773470-79773489 | None:intergenic | 35.0% | |
| !!! | GTATTGCAGAATGTTGCTTT+TGG | + | chr3_3:79774000-79774019 | Msa0476050:intron | 35.0% |
| CTCAAAGTACAATTACCAAG+AGG | - | chr3_3:79774078-79774097 | None:intergenic | 35.0% | |
| GGTAATTGTACTTTGAGCAT+CGG | + | chr3_3:79774081-79774100 | Msa0476050:CDS | 35.0% | |
| ATTAAGTCAACACCAGAAAC+TGG | - | chr3_3:79774453-79774472 | None:intergenic | 35.0% | |
| !! | AGTTTCTGGTGTTGACTTAA+TGG | + | chr3_3:79774452-79774471 | Msa0476050:CDS | 35.0% |
| !!! | CATTTTAACTGGGCTGTATT+TGG | + | chr3_3:79774970-79774989 | Msa0476050:CDS | 35.0% |
| ! | GTAATGAGTTGAAGTGGTAT+TGG | + | chr3_3:79774992-79775011 | Msa0476050:CDS | 35.0% |
| AAGTACAAGATAGACATTCG+CGG | + | chr3_3:79775078-79775097 | Msa0476050:CDS | 35.0% | |
| ! | ATAAGCCAGTTAAGCGATTT+TGG | - | chr3_3:79775185-79775204 | None:intergenic | 35.0% |
| TTATCAAGACAGACTAGGTA+AGG | + | chr3_3:79775269-79775288 | Msa0476050:CDS | 35.0% | |
| ACAGACTAGGTAAGGATATA+AGG | + | chr3_3:79775277-79775296 | Msa0476050:CDS | 35.0% | |
| CAGACTAGGTAAGGATATAA+GGG | + | chr3_3:79775278-79775297 | Msa0476050:CDS | 35.0% | |
| TCCACTAATGAATATGTTCG+AGG | + | chr3_3:79775567-79775586 | Msa0476050:CDS | 35.0% | |
| !! | TGTTGATGGTGTAATGCTAT+GGG | + | chr3_3:79775635-79775654 | Msa0476050:CDS | 35.0% |
| ! | TGTAATGCTATGGGGATTTT+GGG | + | chr3_3:79775644-79775663 | Msa0476050:CDS | 35.0% |
| AAGGTGAAATCAATGAAGCT+GGG | + | chr3_3:79775709-79775728 | Msa0476050:CDS | 35.0% | |
| TCCTTGATCTTAAAGAAGAG+TGG | + | chr3_3:79775739-79775758 | Msa0476050:CDS | 35.0% | |
| !! | ACCACTCTTCTTTAAGATCA+AGG | - | chr3_3:79775743-79775762 | None:intergenic | 35.0% |
| ! | ATTCAGTGGTTTGTACAATG+TGG | + | chr3_3:79775815-79775834 | Msa0476050:CDS | 35.0% |
| ! | CAGACATTCGTTGTTGATAA+GGG | + | chr3_3:79775867-79775886 | Msa0476050:CDS | 35.0% |
| TGATAAGGGTAACTCTTCAT+TGG | + | chr3_3:79775881-79775900 | Msa0476050:CDS | 35.0% | |
| !! | TCAATCGATTTGTAAGCTTC+AGG | + | chr3_3:79775909-79775928 | Msa0476050:exon | 35.0% |
| CTTCAGGAACTTGTATTACA+TGG | + | chr3_3:79775925-79775944 | Msa0476050:three_prime_UTR | 35.0% | |
| ! | GTATTAGAAGTACATGCCTC+AGG | - | chr3_3:79772680-79772699 | None:intergenic | 40.0% |
| ! | TTTTGTTAAGCCGTTCCCTT+TGG | + | chr3_3:79772808-79772827 | Msa0476050:intron | 40.0% |
| TATGTCCTACGATAGCCAAA+GGG | - | chr3_3:79772826-79772845 | None:intergenic | 40.0% | |
| TATCGTAGGACATAGAGCAT+TGG | + | chr3_3:79772832-79772851 | Msa0476050:intron | 40.0% | |
| CATACTAAATCCTGAGTTCG+AGG | + | chr3_3:79773159-79773178 | Msa0476050:CDS | 40.0% | |
| CTCTTCCAGTCCAATTATTC+AGG | - | chr3_3:79773189-79773208 | None:intergenic | 40.0% | |
| ! | CTGAATAATTGGACTGGAAG+AGG | + | chr3_3:79773187-79773206 | Msa0476050:CDS | 40.0% |
| TACATGAGTCCATGGCAAAT+GGG | + | chr3_3:79773224-79773243 | Msa0476050:CDS | 40.0% | |
| ! | AAGGATTTTCCCATTTGCCA+TGG | - | chr3_3:79773236-79773255 | None:intergenic | 40.0% |
| GGGAAAATCCTTCCAAAATC+CGG | + | chr3_3:79773244-79773263 | Msa0476050:CDS | 40.0% | |
| GGAAAATCCTTCCAAAATCC+GGG | + | chr3_3:79773245-79773264 | Msa0476050:CDS | 40.0% | |
| GGAATTCAGCAAGAAATCAC+TGG | + | chr3_3:79773310-79773329 | Msa0476050:CDS | 40.0% | |
| AACTAAAGCAGTGACCTCAT+AGG | - | chr3_3:79773356-79773375 | None:intergenic | 40.0% | |
| ATGAGGTCACTGCTTTAGTT+CGG | + | chr3_3:79773356-79773375 | Msa0476050:CDS | 40.0% | |
| ATATACTGCTCTCGAAGATC+TGG | - | chr3_3:79773439-79773458 | None:intergenic | 40.0% | |
| GATCTTCGAGAGCAGTATAT+AGG | + | chr3_3:79773439-79773458 | Msa0476050:CDS | 40.0% | |
| GAATAATGACATGACTGCTG+TGG | + | chr3_3:79773511-79773530 | Msa0476050:intron | 40.0% | |
| !! | GACTGCTGTGGTTATTTTCT+TGG | + | chr3_3:79773523-79773542 | Msa0476050:intron | 40.0% |
| TTTGCGATACTAAAGTGTGC+AGG | + | chr3_3:79773667-79773686 | Msa0476050:intron | 40.0% | |
| TGCAGGCAACAGATAAAGAT+TGG | + | chr3_3:79773684-79773703 | Msa0476050:intron | 40.0% | |
| GCAGGCAACAGATAAAGATT+GGG | + | chr3_3:79773685-79773704 | Msa0476050:intron | 40.0% | |
| TAAAGATTGGGCTCAAATGC+AGG | + | chr3_3:79773697-79773716 | Msa0476050:CDS | 40.0% | |
| AAAGATTGGGCTCAAATGCA+GGG | + | chr3_3:79773698-79773717 | Msa0476050:CDS | 40.0% | |
| TTGAAGGGGGATCATTTAGA+AGG | - | chr3_3:79773730-79773749 | None:intergenic | 40.0% | |
| AAAGCCTAACCTCAAAATCC+GGG | - | chr3_3:79773850-79773869 | None:intergenic | 40.0% | |
| GAAAGCCTAACCTCAAAATC+CGG | - | chr3_3:79773851-79773870 | None:intergenic | 40.0% | |
| !! | CTATGATGCCTTTTGTTGTG+TGG | + | chr3_3:79773940-79773959 | Msa0476050:intron | 40.0% |
| AGAATCGACCACACAACAAA+AGG | - | chr3_3:79773951-79773970 | None:intergenic | 40.0% | |
| AAGAATGTAACGTCCACTCA+GGG | - | chr3_3:79774166-79774185 | None:intergenic | 40.0% | |
| AGGCAATACCAACATTCTGA+GGG | - | chr3_3:79774305-79774324 | None:intergenic | 40.0% | |
| AAGGCAATACCAACATTCTG+AGG | - | chr3_3:79774306-79774325 | None:intergenic | 40.0% | |
| ! | GGTATTGCCTTTAGTGTTGA+CGG | + | chr3_3:79774315-79774334 | Msa0476050:CDS | 40.0% |
| TACATTCAAGGTCCAGTTTC+TGG | + | chr3_3:79774438-79774457 | Msa0476050:CDS | 40.0% | |
| ! | AATTTTTCCTGTCGATAGGC+AGG | + | chr3_3:79774488-79774507 | Msa0476050:CDS | 40.0% |
| CTATTGATGCACGATCCAAT+TGG | - | chr3_3:79774907-79774926 | None:intergenic | 40.0% | |
| TATTGGACAGAGCCACAAAA+AGG | + | chr3_3:79775009-79775028 | Msa0476050:CDS | 40.0% | |
| ATTGGACAGAGCCACAAAAA+GGG | + | chr3_3:79775010-79775029 | Msa0476050:CDS | 40.0% | |
| TCGACAGCAATGTTCAACAA+TGG | + | chr3_3:79775121-79775140 | Msa0476050:CDS | 40.0% | |
| CGACAGCAATGTTCAACAAT+GGG | + | chr3_3:79775122-79775141 | Msa0476050:CDS | 40.0% | |
| TTCACAAATAGGGTAGCAGA+TGG | - | chr3_3:79775336-79775355 | None:intergenic | 40.0% | |
| TTTACAAGATCAAGGTGCAC+CGG | + | chr3_3:79775425-79775444 | Msa0476050:CDS | 40.0% | |
| TCGAGTGCAGAACAAACAAT+AGG | - | chr3_3:79775495-79775514 | None:intergenic | 40.0% | |
| TTGTTCTGCACTCGATAAGT+TGG | + | chr3_3:79775500-79775519 | Msa0476050:CDS | 40.0% | |
| CTACTCTTGGTCAACCAATA+TGG | + | chr3_3:79775523-79775542 | Msa0476050:CDS | 40.0% | |
| TCAAGCTCGGTAAACCATAT+TGG | - | chr3_3:79775540-79775559 | None:intergenic | 40.0% | |
| GCCTCGAACATATTCATTAG+TGG | - | chr3_3:79775571-79775590 | None:intergenic | 40.0% | |
| ATATGTTCGAGGCGATGATT+TGG | + | chr3_3:79775578-79775597 | Msa0476050:CDS | 40.0% | |
| !! | CTGTTGATGGTGTAATGCTA+TGG | + | chr3_3:79775634-79775653 | Msa0476050:CDS | 40.0% |
| !! | GTTGATGGTGTAATGCTATG+GGG | + | chr3_3:79775636-79775655 | Msa0476050:CDS | 40.0% |
| ! | GTGTAATGCTATGGGGATTT+TGG | + | chr3_3:79775643-79775662 | Msa0476050:CDS | 40.0% |
| GAAGGTGAAATCAATGAAGC+TGG | + | chr3_3:79775708-79775727 | Msa0476050:CDS | 40.0% | |
| ATGGTCATCTTGATGAGCAA+GGG | + | chr3_3:79775775-79775794 | Msa0476050:CDS | 40.0% | |
| CCTTATCAACAACGAATGTC+TGG | - | chr3_3:79775869-79775888 | None:intergenic | 40.0% | |
| CCAGACATTCGTTGTTGATA+AGG | + | chr3_3:79775866-79775885 | Msa0476050:CDS | 40.0% | |
| AACTCGGAGATGATCAATGC+TGG | + | chr3_3:79772647-79772666 | Msa0476050:CDS | 45.0% | |
| CTATGTCCTACGATAGCCAA+AGG | - | chr3_3:79772827-79772846 | None:intergenic | 45.0% | |
| CTAAATCCTGAGTTCGAGGA+TGG | + | chr3_3:79773163-79773182 | Msa0476050:CDS | 45.0% | |
| TCGAGGATGGCCTGAATAAT+TGG | + | chr3_3:79773176-79773195 | Msa0476050:CDS | 45.0% | |
| GATGGCCTGAATAATTGGAC+TGG | + | chr3_3:79773181-79773200 | Msa0476050:CDS | 45.0% | |
| GATTGCAGTACATGAGTCCA+TGG | + | chr3_3:79773216-79773235 | Msa0476050:CDS | 45.0% | |
| GTACATGAGTCCATGGCAAA+TGG | + | chr3_3:79773223-79773242 | Msa0476050:CDS | 45.0% | |
| ! | AGAACTTCCCGGATTTTGGA+AGG | - | chr3_3:79773255-79773274 | None:intergenic | 45.0% |
| ! | GCAAAGAACTTCCCGGATTT+TGG | - | chr3_3:79773259-79773278 | None:intergenic | 45.0% |
| TGCAGATGCAAAGAACTTCC+CGG | - | chr3_3:79773266-79773285 | None:intergenic | 45.0% | |
| AAGCCTAACCTCAAAATCCG+GGG | - | chr3_3:79773849-79773868 | None:intergenic | 45.0% | |
| GAGAACAGCAATCTGGACAA+TGG | + | chr3_3:79774036-79774055 | Msa0476050:CDS | 45.0% | |
| AATCTGGACAATGGCACCAA+CGG | + | chr3_3:79774045-79774064 | Msa0476050:CDS | 45.0% | |
| !! | TGTACTTTGAGCATCGGAAC+TGG | + | chr3_3:79774087-79774106 | Msa0476050:CDS | 45.0% |
| AGAATGTAACGTCCACTCAG+GGG | - | chr3_3:79774165-79774184 | None:intergenic | 45.0% | |
| CAAGAATGTAACGTCCACTC+AGG | - | chr3_3:79774167-79774186 | None:intergenic | 45.0% | |
| TAACCAATCGCACTCAAACC+TGG | + | chr3_3:79774187-79774206 | Msa0476050:CDS | 45.0% | |
| AATCGCACTCAAACCTGGAT+GGG | + | chr3_3:79774192-79774211 | Msa0476050:CDS | 45.0% | |
| ATCAAGTATCTGCTTGGGTC+AGG | + | chr3_3:79774259-79774278 | Msa0476050:CDS | 45.0% | |
| !! | CTTTAGTGTTGACGGCCAAT+GGG | + | chr3_3:79774323-79774342 | Msa0476050:CDS | 45.0% |
| GATTTCATGCCATCTGCTGT+CGG | - | chr3_3:79774373-79774392 | None:intergenic | 45.0% | |
| GACAGCAGATGGCATGAAAT+CGG | + | chr3_3:79774372-79774391 | Msa0476050:CDS | 45.0% | |
| !! | GGTGTTGACTTAATGGTTGC+TGG | + | chr3_3:79774459-79774478 | Msa0476050:CDS | 45.0% |
| TTTATGCGAGCAGACAGACA+AGG | + | chr3_3:79774524-79774543 | Msa0476050:CDS | 45.0% | |
| TTCGCGGACATTGTATCTTC+TGG | + | chr3_3:79775094-79775113 | Msa0476050:CDS | 45.0% | |
| TCGCGGACATTGTATCTTCT+GGG | + | chr3_3:79775095-79775114 | Msa0476050:CDS | 45.0% | |
| GCTGTCCAAAATCGCTTAAC+TGG | + | chr3_3:79775177-79775196 | Msa0476050:CDS | 45.0% | |
| GGCTTATTGTCTCGCTACAA+AGG | + | chr3_3:79775198-79775217 | Msa0476050:CDS | 45.0% | |
| TGAATTCCTATTCCCCCAAC+CGG | - | chr3_3:79775447-79775466 | None:intergenic | 45.0% | |
| GTTGGGGGAATAGGAATTCA+AGG | + | chr3_3:79775447-79775466 | Msa0476050:CDS | 45.0% | |
| ! | AGGTCACATTGATAGTCCTG+TGG | + | chr3_3:79775467-79775486 | Msa0476050:CDS | 45.0% |
| ! | GGTCACATTGATAGTCCTGT+GGG | + | chr3_3:79775468-79775487 | Msa0476050:CDS | 45.0% |
| ! | GTCACATTGATAGTCCTGTG+GGG | + | chr3_3:79775469-79775488 | Msa0476050:CDS | 45.0% |
| ! | CTCGATAAGTTGGCTACTCT+TGG | + | chr3_3:79775510-79775529 | Msa0476050:CDS | 45.0% |
| AGTGGAAGACACATCAAGCT+CGG | - | chr3_3:79775553-79775572 | None:intergenic | 45.0% | |
| GCATTACACCATCAACAGCA+GGG | - | chr3_3:79775632-79775651 | None:intergenic | 45.0% | |
| AGCATTACACCATCAACAGC+AGG | - | chr3_3:79775633-79775652 | None:intergenic | 45.0% | |
| TCACCAAATGTGCATTGTCG+CGG | - | chr3_3:79775683-79775702 | None:intergenic | 45.0% | |
| ! | GCACATTTGGTGAATGCAGA+AGG | + | chr3_3:79775690-79775709 | Msa0476050:CDS | 45.0% |
| GAGTGGTTATCTCACACTCA+TGG | + | chr3_3:79775756-79775775 | Msa0476050:CDS | 45.0% | |
| CATGGTCATCTTGATGAGCA+AGG | + | chr3_3:79775774-79775793 | Msa0476050:CDS | 45.0% | |
| TGGTCATCTTGATGAGCAAG+GGG | + | chr3_3:79775776-79775795 | Msa0476050:CDS | 45.0% | |
| AGCAAGGGGAATTCAACTTC+AGG | + | chr3_3:79775790-79775809 | Msa0476050:CDS | 45.0% | |
| GCAAGGGGAATTCAACTTCA+GGG | + | chr3_3:79775791-79775810 | Msa0476050:CDS | 45.0% | |
| CAAGGGGAATTCAACTTCAG+GGG | + | chr3_3:79775792-79775811 | Msa0476050:CDS | 45.0% | |
| TTCAACTTCAGGGGATTCAG+TGG | + | chr3_3:79775801-79775820 | Msa0476050:CDS | 45.0% | |
| ! | TAGAAGTACATGCCTCAGGG+AGG | - | chr3_3:79772676-79772695 | None:intergenic | 50.0% |
| CCTACGATAGCCAAAGGGAA+CGG | - | chr3_3:79772821-79772840 | None:intergenic | 50.0% | |
| CAACTGAACGCACACAAAGC+TGG | + | chr3_3:79773284-79773303 | Msa0476050:CDS | 50.0% | |
| GAACGCACACAAAGCTGGAA+TGG | + | chr3_3:79773289-79773308 | Msa0476050:CDS | 50.0% | |
| AAGAATGTCAGTGCCTCCAG+GGG | - | chr3_3:79773777-79773796 | None:intergenic | 50.0% | |
| GAAGAATGTCAGTGCCTCCA+GGG | - | chr3_3:79773778-79773797 | None:intergenic | 50.0% | |
| AGAAGAATGTCAGTGCCTCC+AGG | - | chr3_3:79773779-79773798 | None:intergenic | 50.0% | |
| AGCCTAACCTCAAAATCCGG+GGG | - | chr3_3:79773848-79773867 | None:intergenic | 50.0% | |
| ATCTGGACAATGGCACCAAC+GGG | + | chr3_3:79774046-79774065 | Msa0476050:CDS | 50.0% | |
| ACCGCGTGTAATTCCACCAA+TGG | + | chr3_3:79774113-79774132 | Msa0476050:CDS | 50.0% | |
| GCCATTGGTGGAATTACACG+CGG | - | chr3_3:79774117-79774136 | None:intergenic | 50.0% | |
| AGAGAGTCTCTTGCCATTGG+TGG | - | chr3_3:79774129-79774148 | None:intergenic | 50.0% | |
| CCAAGAGAGTCTCTTGCCAT+TGG | - | chr3_3:79774132-79774151 | None:intergenic | 50.0% | |
| CCAATGGCAAGAGACTCTCT+TGG | + | chr3_3:79774129-79774148 | Msa0476050:CDS | 50.0% | |
| CATCCAGGTTTGAGTGCGAT+TGG | - | chr3_3:79774193-79774212 | None:intergenic | 50.0% | |
| CAATCGCACTCAAACCTGGA+TGG | + | chr3_3:79774191-79774210 | Msa0476050:CDS | 50.0% | |
| TTCTCAGTGATCGCCTGAGA+AGG | - | chr3_3:79774219-79774238 | None:intergenic | 50.0% | |
| GTATCTGCTTGGGTCAGGAT+TGG | + | chr3_3:79774264-79774283 | Msa0476050:CDS | 50.0% | |
| !! | AGGATTGGTTCCGGATCACA+TGG | + | chr3_3:79774279-79774298 | Msa0476050:CDS | 50.0% |
| ! | ATTCTGAGGGCCATGTGATC+CGG | - | chr3_3:79774292-79774311 | None:intergenic | 50.0% |
| TCACATGGCCCTCAGAATGT+TGG | + | chr3_3:79774294-79774313 | Msa0476050:CDS | 50.0% | |
| CCATTGGCCGTCAACACTAA+AGG | - | chr3_3:79774325-79774344 | None:intergenic | 50.0% | |
| !! | CCTTTAGTGTTGACGGCCAA+TGG | + | chr3_3:79774322-79774341 | Msa0476050:CDS | 50.0% |
| AGCAGATGGCATGAAATCGG+TGG | + | chr3_3:79774375-79774394 | Msa0476050:CDS | 50.0% | |
| !! | AAGATCAAGGTGCACCGGTT+GGG | + | chr3_3:79775430-79775449 | Msa0476050:CDS | 50.0% |
| GAACAAACAATAGGCCCCAC+AGG | - | chr3_3:79775486-79775505 | None:intergenic | 50.0% | |
| ! | TGTTCGAGGCGATGATTTGG+AGG | + | chr3_3:79775581-79775600 | Msa0476050:CDS | 50.0% |
| GGTTATGTTGCGCGAAGCTA+TGG | + | chr3_3:79775602-79775621 | Msa0476050:CDS | 50.0% | |
| TAAACCGGTTGCTCACTTGC+TGG | + | chr3_3:79776084-79776103 | Msa0476050:three_prime_UTR | 50.0% | |
| ATGACCAGCAAGTGAGCAAC+CGG | - | chr3_3:79776091-79776110 | None:intergenic | 50.0% | |
| CAATGCTGGAAACCTCCCTG+AGG | + | chr3_3:79772661-79772680 | Msa0476050:CDS | 55.0% | |
| CCGTTCCCTTTGGCTATCGT+AGG | + | chr3_3:79772818-79772837 | Msa0476050:intron | 55.0% | |
| TTCAGGCCATCCTCGAACTC+AGG | - | chr3_3:79773172-79773191 | None:intergenic | 55.0% | |
| GTTTATTTGGAAGGCCCCCC+TGG | + | chr3_3:79773758-79773777 | Msa0476050:CDS | 55.0% | |
| AGAATGTCAGTGCCTCCAGG+GGG | - | chr3_3:79773776-79773795 | None:intergenic | 55.0% | |
| !! | TCAAAATCCGGGGGTGTCGA+AGG | - | chr3_3:79773839-79773858 | None:intergenic | 55.0% |
| ! | TTCGACACCCCCGGATTTTG+AGG | + | chr3_3:79773838-79773857 | Msa0476050:CDS | 55.0% |
| !!! | CACCCCCGGATTTTGAGGTT+AGG | + | chr3_3:79773843-79773862 | Msa0476050:intron | 55.0% |
| AACCTGGATGGGTCCTTCTC+AGG | + | chr3_3:79774203-79774222 | Msa0476050:CDS | 55.0% | |
| !! | GCTTGGGTCAGGATTGGTTC+CGG | + | chr3_3:79774270-79774289 | Msa0476050:CDS | 55.0% |
| AACTTGGGTCTGTCCTCCGT+TGG | - | chr3_3:79774349-79774368 | None:intergenic | 55.0% | |
| CCATCTGCTGTCGGCAACTT+GGG | - | chr3_3:79774364-79774383 | None:intergenic | 55.0% | |
| TTCCTGTCGATAGGCAGGCA+AGG | + | chr3_3:79774493-79774512 | Msa0476050:CDS | 55.0% | |
| AACCTTGCCTGCCTATCGAC+AGG | - | chr3_3:79774498-79774517 | None:intergenic | 55.0% | |
| GGGTAGCAGATGGATCTAGC+TGG | - | chr3_3:79775326-79775345 | None:intergenic | 55.0% | |
| ! | CAAGATCAAGGTGCACCGGT+TGG | + | chr3_3:79775429-79775448 | Msa0476050:CDS | 55.0% |
| !! | AGATCAAGGTGCACCGGTTG+GGG | + | chr3_3:79775431-79775450 | Msa0476050:CDS | 55.0% |
| ATGGCACACCCTGCTGTTGA+TGG | + | chr3_3:79775621-79775640 | Msa0476050:CDS | 55.0% | |
| GAGCCGCGACAATGCACATT+TGG | + | chr3_3:79775677-79775696 | Msa0476050:CDS | 55.0% | |
| GCAGCGCAAGCTTGCCTATG+AGG | + | chr3_3:79773339-79773358 | Msa0476050:CDS | 60.0% | |
| TATTTGGAAGGCCCCCCTGG+AGG | + | chr3_3:79773761-79773780 | Msa0476050:CDS | 60.0% | |
| GAATGTCAGTGCCTCCAGGG+GGG | - | chr3_3:79773775-79773794 | None:intergenic | 60.0% | |
| ATCACCACCTTCGACACCCC+CGG | + | chr3_3:79773829-79773848 | Msa0476050:CDS | 60.0% | |
| !! | AAATCCGGGGGTGTCGAAGG+TGG | - | chr3_3:79773836-79773855 | None:intergenic | 60.0% |
| TGGACAATGGCACCAACGGG+TGG | + | chr3_3:79774049-79774068 | Msa0476050:CDS | 60.0% | |
| ACCAACGGGTGGTCTCCTCT+TGG | + | chr3_3:79774060-79774079 | Msa0476050:CDS | 60.0% | |
| ACCAAGAGGAGACCACCCGT+TGG | - | chr3_3:79774064-79774083 | None:intergenic | 60.0% | |
| GGTCCTCATGAACCCCTGAG+TGG | + | chr3_3:79774150-79774169 | Msa0476050:CDS | 60.0% | |
| CGTCCACTCAGGGGTTCATG+AGG | - | chr3_3:79774156-79774175 | None:intergenic | 60.0% | |
| GTTGACGGCCAATGGGCCAA+CGG | + | chr3_3:79774330-79774349 | Msa0476050:CDS | 60.0% | |
| TCTGTCCTCCGTTGGCCCAT+TGG | - | chr3_3:79774341-79774360 | None:intergenic | 60.0% | |
| CCCAAGTTGCCGACAGCAGA+TGG | + | chr3_3:79774361-79774380 | Msa0476050:CDS | 60.0% | |
| GCCATCTGCTGTCGGCAACT+TGG | - | chr3_3:79774365-79774384 | None:intergenic | 60.0% | |
| !! | GATCAAGGTGCACCGGTTGG+GGG | + | chr3_3:79775432-79775451 | Msa0476050:CDS | 60.0% |
| CGCCTGAGAAGGACCCATCC+AGG | - | chr3_3:79774208-79774227 | None:intergenic | 65.0% | |
| !! | GGTGCACCGGTTGGGGGAAT+AGG | + | chr3_3:79775438-79775457 | Msa0476050:CDS | 65.0% |
| GACGGCCAATGGGCCAACGG+AGG | + | chr3_3:79774333-79774352 | Msa0476050:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 79772641 | 79776157 | 79772641 | ID=Msa0476050;Name=Msa0476050 |
| chr3_3 | mRNA | 79772641 | 79776157 | 79772641 | ID=Msa0476050-mRNA-1;Parent=Msa0476050;Name=Msa0476050-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0.5|0.4|1|1|1|5|234|748 |
| chr3_3 | exon | 79772641 | 79772709 | 79772641 | ID=Msa0476050-mRNA-1:exon:21620;Parent=Msa0476050-mRNA-1 |
| chr3_3 | exon | 79773115 | 79773474 | 79773115 | ID=Msa0476050-mRNA-1:exon:21621;Parent=Msa0476050-mRNA-1 |
| chr3_3 | exon | 79773689 | 79773859 | 79773689 | ID=Msa0476050-mRNA-1:exon:21622;Parent=Msa0476050-mRNA-1 |
| chr3_3 | exon | 79774009 | 79774545 | 79774009 | ID=Msa0476050-mRNA-1:exon:21623;Parent=Msa0476050-mRNA-1 |
| chr3_3 | exon | 79774814 | 79776157 | 79774814 | ID=Msa0476050-mRNA-1:exon:21624;Parent=Msa0476050-mRNA-1 |
| chr3_3 | CDS | 79772641 | 79772709 | 79772641 | ID=Msa0476050-mRNA-1:cds;Parent=Msa0476050-mRNA-1 |
| chr3_3 | CDS | 79773115 | 79773474 | 79773115 | ID=Msa0476050-mRNA-1:cds;Parent=Msa0476050-mRNA-1 |
| chr3_3 | CDS | 79773689 | 79773859 | 79773689 | ID=Msa0476050-mRNA-1:cds;Parent=Msa0476050-mRNA-1 |
| chr3_3 | CDS | 79774009 | 79774545 | 79774009 | ID=Msa0476050-mRNA-1:cds;Parent=Msa0476050-mRNA-1 |
| chr3_3 | CDS | 79774814 | 79775923 | 79774814 | ID=Msa0476050-mRNA-1:cds;Parent=Msa0476050-mRNA-1 |
| chr3_3 | three_prime_UTR | 79775924 | 79776157 | 79775924 | ID=Msa0476050-mRNA-1:three_prime_utr;Parent=Msa0476050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
