Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140640 | XP_013461832.1 | 96.262 | 749 | 18 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140640 | sp|A0A1P8AWH8|XYN1_ARATH | 69.577 | 733 | 218 | 4 | 21 | 748 | 210 | 942 | 0.0 | 1095 |
| Msa0140640 | sp|A0A1P8AWH8|XYN1_ARATH | 28.779 | 344 | 213 | 8 | 31 | 361 | 51 | 375 | 1.22e-32 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140640 | A0A072V240 | 96.262 | 749 | 18 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039640 | Msa0140640 | 0.800046 | 1.731897e-48 | -8.615850e-47 |
| Msa0087280 | Msa0140640 | 0.810653 | 1.035760e-50 | -8.615850e-47 |
| Msa0133920 | Msa0140640 | 0.807480 | 4.951908e-50 | -8.615850e-47 |
| Msa0140640 | Msa0154760 | 0.808620 | 2.832088e-50 | -8.615850e-47 |
| Msa0140640 | Msa0228680 | 0.804241 | 2.374456e-49 | -8.615850e-47 |
| Msa0140640 | Msa0381450 | 0.926478 | 4.435913e-91 | -8.615850e-47 |
| Msa0140640 | Msa0476050 | 0.918222 | 2.032276e-86 | -8.615850e-47 |
| Msa0140640 | Msa0519940 | 0.993314 | 6.929185e-199 | -8.615850e-47 |
| Msa0140640 | Msa0799170 | 0.846401 | 2.223426e-59 | -8.615850e-47 |
| Msa0140640 | Msa0837610 | 0.848077 | 7.710684e-60 | -8.615850e-47 |
| Msa0140640 | Msa1191550 | 0.806889 | 6.605304e-50 | -8.615850e-47 |
| Msa0140640 | Msa1270840 | 0.802614 | 5.159990e-49 | -8.615850e-47 |
| Msa0140640 | Msa1369030 | 0.803913 | 2.778346e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140640 | MtrunA17_Chr3g0135341 | 96.262 | 749 | 18 | 2 | 1 | 748 | 1 | 740 | 0.0 | 1498 |
| Msa0140640 | MtrunA17_Chr1g0151951 | 79.086 | 722 | 148 | 2 | 30 | 748 | 209 | 930 | 0.0 | 1222 |
| Msa0140640 | MtrunA17_Chr1g0151951 | 30.792 | 341 | 211 | 7 | 33 | 361 | 38 | 365 | 3.48e-34 | 140 |
| Msa0140640 | MtrunA17_Chr3g0145541 | 33.588 | 524 | 310 | 15 | 249 | 748 | 50 | 559 | 6.64e-77 | 258 |
| Msa0140640 | MtrunA17_Chr5g0421191 | 29.926 | 538 | 311 | 17 | 208 | 722 | 43 | 537 | 5.89e-64 | 223 |
| Msa0140640 | MtrunA17_Chr1g0207211 | 28.440 | 545 | 338 | 14 | 197 | 722 | 41 | 552 | 1.44e-62 | 219 |
| Msa0140640 | MtrunA17_Chr7g0223191 | 29.346 | 535 | 318 | 15 | 208 | 722 | 17 | 511 | 8.91e-62 | 216 |
| Msa0140640 | MtrunA17_Chr4g0037551 | 31.906 | 467 | 276 | 14 | 208 | 663 | 46 | 481 | 4.91e-61 | 215 |
| Msa0140640 | MtrunA17_Chr1g0207241 | 29.873 | 472 | 296 | 12 | 200 | 661 | 50 | 496 | 2.61e-60 | 214 |
| Msa0140640 | MtrunA17_Chr1g0207201 | 31.362 | 389 | 250 | 9 | 282 | 660 | 1 | 382 | 4.46e-56 | 199 |
| Msa0140640 | MtrunA17_Chr1g0207231 | 28.319 | 452 | 305 | 11 | 282 | 722 | 1 | 444 | 3.88e-54 | 194 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140640 | AT1G58370.2 | 69.577 | 733 | 218 | 4 | 21 | 748 | 210 | 942 | 0.0 | 1095 |
| Msa0140640 | AT1G58370.2 | 28.779 | 344 | 213 | 8 | 31 | 361 | 51 | 375 | 1.24e-33 | 139 |
| Msa0140640 | AT1G58370.1 | 69.577 | 733 | 218 | 4 | 21 | 748 | 182 | 914 | 0.0 | 1095 |
| Msa0140640 | AT1G58370.1 | 28.779 | 344 | 213 | 8 | 31 | 361 | 23 | 347 | 1.38e-33 | 139 |
| Msa0140640 | AT4G08160.1 | 66.310 | 748 | 239 | 6 | 14 | 748 | 2 | 749 | 0.0 | 1041 |
| Msa0140640 | AT1G10050.2 | 61.299 | 739 | 277 | 6 | 16 | 748 | 328 | 1063 | 0.0 | 955 |
| Msa0140640 | AT1G10050.2 | 25.634 | 355 | 233 | 9 | 35 | 374 | 3 | 341 | 2.88e-29 | 125 |
| Msa0140640 | AT1G10050.1 | 61.299 | 739 | 277 | 6 | 16 | 748 | 328 | 1063 | 0.0 | 955 |
| Msa0140640 | AT1G10050.1 | 25.634 | 355 | 233 | 9 | 35 | 374 | 3 | 341 | 2.88e-29 | 125 |
| Msa0140640 | AT1G10050.3 | 61.299 | 739 | 277 | 6 | 16 | 748 | 360 | 1095 | 0.0 | 954 |
| Msa0140640 | AT1G10050.3 | 25.294 | 340 | 225 | 7 | 35 | 361 | 35 | 358 | 3.40e-29 | 125 |
| Msa0140640 | AT4G08160.2 | 67.073 | 656 | 203 | 6 | 14 | 656 | 2 | 657 | 0.0 | 918 |
| Msa0140640 | AT4G38650.1 | 34.328 | 469 | 287 | 10 | 284 | 738 | 91 | 552 | 5.79e-74 | 251 |
| Msa0140640 | AT4G33830.1 | 29.679 | 529 | 326 | 14 | 208 | 722 | 47 | 543 | 3.15e-67 | 233 |
| Msa0140640 | AT4G33840.1 | 28.868 | 530 | 330 | 12 | 208 | 722 | 46 | 543 | 7.47e-67 | 232 |
| Msa0140640 | AT4G33860.1 | 28.947 | 532 | 329 | 13 | 208 | 723 | 46 | 544 | 4.35e-61 | 216 |
| Msa0140640 | AT4G38300.1 | 43.359 | 256 | 131 | 4 | 381 | 632 | 12 | 257 | 8.07e-60 | 204 |
| Msa0140640 | AT2G14690.1 | 31.011 | 445 | 277 | 16 | 284 | 707 | 82 | 517 | 2.89e-52 | 191 |
| Msa0140640 | AT4G33810.1 | 28.747 | 407 | 269 | 12 | 269 | 661 | 33 | 432 | 3.09e-51 | 187 |
| Msa0140640 | AT4G33810.5 | 28.747 | 407 | 269 | 12 | 269 | 661 | 33 | 432 | 3.09e-51 | 187 |
| Msa0140640 | AT4G33810.2 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.85e-51 | 187 |
| Msa0140640 | AT4G33810.3 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.85e-51 | 187 |
| Msa0140640 | AT4G33810.4 | 28.747 | 407 | 269 | 12 | 269 | 661 | 73 | 472 | 4.85e-51 | 187 |
| Msa0140640 | AT4G33820.1 | 29.049 | 389 | 259 | 10 | 284 | 661 | 90 | 472 | 7.01e-49 | 181 |
Find 186 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGCTTTAGTTCGGATATT+TGG | 0.103053 | 1_3:+74897440 | Msa0140640:CDS |
| TACATTCAAGGTCCAGTTTC+TGG | 0.151513 | 1_3:+74898514 | Msa0140640:CDS |
| TTCAAAAGTAGTTGTTTATT+TGG | 0.166485 | 1_3:+74897821 | Msa0140640:CDS |
| ATAAGCCAGTTAAGCGATTT+TGG | 0.179789 | 1_3:-74899257 | None:intergenic |
| GCAAAGAACTTCCCGGATTT+TGG | 0.200315 | 1_3:-74897332 | None:intergenic |
| GTGTAATGCTATGGGGCTTT+TGG | 0.215964 | 1_3:+74899718 | Msa0140640:CDS |
| CATGATAATCATTCACAAAT+AGG | 0.218933 | 1_3:-74899419 | None:intergenic |
| ACAGACTAGGTAAGGATATA+AGG | 0.260677 | 1_3:+74899352 | Msa0140640:CDS |
| AGTTTCTGGTGTTGACTTAA+TGG | 0.273413 | 1_3:+74898528 | Msa0140640:CDS |
| CTACTCTTGGTCAACCAATA+TGG | 0.285540 | 1_3:+74899598 | Msa0140640:CDS |
| CTCTTCCAGTCCAATTATTC+AGG | 0.294811 | 1_3:-74897262 | None:intergenic |
| CTGCTTTAGTTCGGATATTT+GGG | 0.297447 | 1_3:+74897441 | Msa0140640:CDS |
| GGTGTTGACTTAATGGTTGC+TGG | 0.301216 | 1_3:+74898535 | Msa0140640:CDS |
| TTCGCGGACATTGTATCTTC+TGG | 0.301509 | 1_3:+74899169 | Msa0140640:CDS |
| TCGAGGATGGCCTGAATAAT+TGG | 0.308205 | 1_3:+74897252 | Msa0140640:CDS |
| AAAAGGGAATTTCAACTATA+AGG | 0.329649 | 1_3:+74899101 | Msa0140640:CDS |
| AGAAATAAAATAATATTTGT+TGG | 0.340449 | 1_3:+74900126 | Msa0140640:three_prime_UTR |
| GGGAAAATCCTTCCAAAATC+CGG | 0.368365 | 1_3:+74897320 | Msa0140640:CDS |
| GCTGTCCAAAATCGCTTAAC+TGG | 0.369480 | 1_3:+74899252 | Msa0140640:CDS |
| CCAGACATTCGTTGTTGATA+AGG | 0.370442 | 1_3:+74899941 | Msa0140640:CDS |
| CAGACATTCGTTGTTGATAA+GGG | 0.372479 | 1_3:+74899942 | Msa0140640:CDS |
| AGCAAGGGGAATTCAACTTC+AGG | 0.373704 | 1_3:+74899865 | Msa0140640:CDS |
| GCCATCTGCTGTCGGCAACT+TGG | 0.380256 | 1_3:-74898438 | None:intergenic |
| GAGCCGCGACAATGCACATT+TGG | 0.384503 | 1_3:+74899752 | Msa0140640:CDS |
| TAATGTAATGAAAAGATTGA+TGG | 0.389625 | 1_3:+74900087 | Msa0140640:three_prime_UTR |
| TATTGGACAGAGCCACAAAA+AGG | 0.390280 | 1_3:+74899084 | Msa0140640:CDS |
| ATTAAGTCAACACCAGAAAC+TGG | 0.390421 | 1_3:-74898526 | None:intergenic |
| TTGAAGGGGAATCATTTAGA+AGG | 0.394630 | 1_3:-74897803 | None:intergenic |
| GTATTGCAGAATGTTGCTTT+TGG | 0.399531 | 1_3:+74898076 | Msa0140640:intron |
| GAAAGCCTAACCTCAAAATC+CGG | 0.403044 | 1_3:-74897924 | None:intergenic |
| GTAATGAGTTGAAGTGGTAT+TGG | 0.405250 | 1_3:+74899067 | Msa0140640:CDS |
| CCTTTAGTGTTGACGGCCAA+TGG | 0.409839 | 1_3:+74898398 | Msa0140640:CDS |
| AGATCAAGGTGCACCGGTTG+GGG | 0.410100 | 1_3:+74899506 | Msa0140640:CDS |
| AAGATCAAGGTGCACCGGTT+GGG | 0.410879 | 1_3:+74899505 | Msa0140640:CDS |
| AGATTGATGGACTGTCATAT+TGG | 0.411058 | 1_3:+74900100 | Msa0140640:three_prime_UTR |
| CTGTTGATGGTGTAATGCTA+TGG | 0.411947 | 1_3:+74899709 | Msa0140640:CDS |
| ATTCTTGATTTGCAAGATCA+AGG | 0.412518 | 1_3:+74899492 | Msa0140640:CDS |
| TGCAGGCAACAGATAAAGAT+TGG | 0.414707 | 1_3:+74897760 | Msa0140640:intron |
| ATGATAATCATTCACAAATA+GGG | 0.417257 | 1_3:-74899418 | None:intergenic |
| ATATGTTCGAGGCGATGATT+TGG | 0.420483 | 1_3:+74899653 | Msa0140640:CDS |
| TCAAGCTCGGTAAACCATAT+TGG | 0.421495 | 1_3:-74899612 | None:intergenic |
| ACCACTCTTCTTTAAGATCA+AGG | 0.422719 | 1_3:-74899815 | None:intergenic |
| TATAATTGAGAACAGCAATC+TGG | 0.426399 | 1_3:+74898105 | Msa0140640:CDS |
| GCTTGGGTCAGGATTGGTTC+CGG | 0.428334 | 1_3:+74898346 | Msa0140640:CDS |
| CTTCAGAAACTTGTATTACA+TGG | 0.429240 | 1_3:+74900000 | Msa0140640:three_prime_UTR |
| GATCTTCGAGAGCAGTATAT+AGG | 0.430612 | 1_3:+74897515 | Msa0140640:CDS |
| CTCGATAAGTTGGCTACTCT+TGG | 0.431121 | 1_3:+74899585 | Msa0140640:CDS |
| TCGCGGACATTGTATCTTCT+GGG | 0.432457 | 1_3:+74899170 | Msa0140640:CDS |
| TAAAGATTGGGCTCAAATGC+AGG | 0.434482 | 1_3:+74897773 | Msa0140640:CDS |
| ATATACTGCTCTCGAAGATC+TGG | 0.434721 | 1_3:-74897512 | None:intergenic |
| TGATAAGGGCGGCTCTTCAT+TGG | 0.438724 | 1_3:+74899956 | Msa0140640:CDS |
| TGCAGATGCAAAGAACTTCC+CGG | 0.438822 | 1_3:-74897339 | None:intergenic |
| AACCTGGATGGGTCCTTCTC+AGG | 0.439305 | 1_3:+74898279 | Msa0140640:CDS |
| TCTGTCCTCCGTTGGCCCAT+TGG | 0.442065 | 1_3:-74898414 | None:intergenic |
| CCATCTGCTGTCGGCAACTT+GGG | 0.445406 | 1_3:-74898437 | None:intergenic |
| GGAAATTGTTACCTTTGAAA+AGG | 0.451541 | 1_3:+74899911 | Msa0140640:CDS |
| ATCAAGTATCTGCTTGGGTC+AGG | 0.452969 | 1_3:+74898335 | Msa0140640:CDS |
| CAACTGAACGCACACAAAGC+TGG | 0.453239 | 1_3:+74897360 | Msa0140640:CDS |
| AAAGTAGTTGTTTATTTGGA+AGG | 0.453467 | 1_3:+74897825 | Msa0140640:CDS |
| CCTTATCAACAACGAATGTC+TGG | 0.454734 | 1_3:-74899941 | None:intergenic |
| GTACATGAGTCCATGGCAAA+TGG | 0.457411 | 1_3:+74897299 | Msa0140640:CDS |
| TAACATATCAAGTATCTGCT+TGG | 0.458399 | 1_3:+74898329 | Msa0140640:CDS |
| TAGTGTGGTATACTGAATAG+TGG | 0.459390 | 1_3:-74896777 | None:intergenic |
| TTCAGGCCATCCTCGAACTC+AGG | 0.461619 | 1_3:-74897245 | None:intergenic |
| TTAAAGTAACATCACGCTTA+CGG | 0.463167 | 1_3:-74898891 | None:intergenic |
| CAGACTAGGTAAGGATATAA+GGG | 0.465786 | 1_3:+74899353 | Msa0140640:CDS |
| ATTCTGAGGGCCATGTGATC+CGG | 0.465999 | 1_3:-74898365 | None:intergenic |
| GTATCTGCTTGGGTCAGGAT+TGG | 0.466467 | 1_3:+74898340 | Msa0140640:CDS |
| AACATATCAAGTATCTGCTT+GGG | 0.466505 | 1_3:+74898330 | Msa0140640:CDS |
| ATGGCACATCCTGCTGTTGA+TGG | 0.466570 | 1_3:+74899696 | Msa0140640:CDS |
| GCCTCGAACATATTCATTAG+TGG | 0.466710 | 1_3:-74899643 | None:intergenic |
| ATCTGGACAATGGCACCAAC+GGG | 0.468015 | 1_3:+74898122 | Msa0140640:CDS |
| TGTTGATGGTGTAATGCTAT+GGG | 0.468563 | 1_3:+74899710 | Msa0140640:CDS |
| TAACCAATCGCACTCAAACC+TGG | 0.473942 | 1_3:+74898263 | Msa0140640:CDS |
| CTTTAGTGTTGACGGCCAAT+GGG | 0.475195 | 1_3:+74898399 | Msa0140640:CDS |
| CTGAATAATTGGACTGGAAG+AGG | 0.476567 | 1_3:+74897263 | Msa0140640:CDS |
| GACAGCAGATGGCATGAAAT+CGG | 0.479030 | 1_3:+74898448 | Msa0140640:CDS |
| TCGAGTGCAGAACAAACAAT+AGG | 0.483133 | 1_3:-74899567 | None:intergenic |
| GAAGGTGAAATCAATGAAGC+TGG | 0.483325 | 1_3:+74899783 | Msa0140640:CDS |
| AGTTATGTTGCGCGAAGCTA+TGG | 0.486478 | 1_3:+74899677 | Msa0140640:CDS |
| AACTTGGGTCTGTCCTCCGT+TGG | 0.487407 | 1_3:-74898422 | None:intergenic |
| TGTACTTTGAGCATCGGAAC+TGG | 0.488314 | 1_3:+74898163 | Msa0140640:CDS |
| GGTATTGCCTTTAGTGTTGA+CGG | 0.489124 | 1_3:+74898391 | Msa0140640:CDS |
| AGAGAGTCTCTTGCCATTGG+TGG | 0.492478 | 1_3:-74898202 | None:intergenic |
| ATGAGGTCACTGCTTTAGTT+CGG | 0.493909 | 1_3:+74897432 | Msa0140640:CDS |
| CATACTAAATCCTGAGTTCG+AGG | 0.497515 | 1_3:+74897235 | Msa0140640:CDS |
| AACTCGGAGATGATCAATGC+TGG | 0.498002 | 1_3:+74896724 | Msa0140640:CDS |
| AGAAGAATGTCAGTGCCTCC+AGG | 0.498736 | 1_3:-74897852 | None:intergenic |
| CGACAGCAATGTTCAACAAT+GGG | 0.503377 | 1_3:+74899197 | Msa0140640:CDS |
| GTATTAGAAGTACATGCCTC+AGG | 0.505454 | 1_3:-74896754 | None:intergenic |
| TTATCAAGACAGACTAGGTA+AGG | 0.507118 | 1_3:+74899344 | Msa0140640:CDS |
| ATTCCCCTTGCTCATCAAGA+TGG | 0.507602 | 1_3:-74899854 | None:intergenic |
| CATCCAGGTTTGAGTGCGAT+TGG | 0.509313 | 1_3:-74898266 | None:intergenic |
| AACCTTGCCTGCCTATCGAC+AGG | 0.513887 | 1_3:-74898571 | None:intergenic |
| TCCACTAATGAATATGTTCG+AGG | 0.514151 | 1_3:+74899642 | Msa0140640:CDS |
| CCATTGGCCGTCAACACTAA+AGG | 0.515778 | 1_3:-74898398 | None:intergenic |
| TACATGAGTCCATGGCAAAT+GGG | 0.515874 | 1_3:+74897300 | Msa0140640:CDS |
| TCCTTGATCTTAAAGAAGAG+TGG | 0.516884 | 1_3:+74899814 | Msa0140640:CDS |
| CAAGATCAAGGTGCACCGGT+TGG | 0.520918 | 1_3:+74899504 | Msa0140640:CDS |
| AAAGCCTAACCTCAAAATCC+GGG | 0.520954 | 1_3:-74897923 | None:intergenic |
| GGTAATTGTACTTTGAGCAT+CGG | 0.525699 | 1_3:+74898157 | Msa0140640:CDS |
| CAAGAATGTAACGTCCACTC+AGG | 0.526881 | 1_3:-74898240 | None:intergenic |
| GGAATTCAGCAAGAAATCAC+TGG | 0.527804 | 1_3:+74897386 | Msa0140640:CDS |
| ACCAACGGGTGGTCTCCTCT+TGG | 0.529762 | 1_3:+74898136 | Msa0140640:CDS |
| CTATTGATGCACGATCCAAT+TGG | 0.531809 | 1_3:-74898979 | None:intergenic |
| AACTAAAGCAGTGACCTCAT+AGG | 0.532142 | 1_3:-74897429 | None:intergenic |
| CGCCTGAGAAGGACCCATCC+AGG | 0.534151 | 1_3:-74898281 | None:intergenic |
| GCAGCGCAAGCTTGCCTATG+AGG | 0.535069 | 1_3:+74897415 | Msa0140640:CDS |
| ATCACCACCTTCGACACCCC+CGG | 0.535089 | 1_3:+74897905 | Msa0140640:CDS |
| GAACGCACACAAAGCTGGAA+TGG | 0.536071 | 1_3:+74897365 | Msa0140640:CDS |
| AATGATTATCATGTTGAAGA+TGG | 0.536653 | 1_3:+74899429 | Msa0140640:CDS |
| GGAAAATCCTTCCAAAATCC+GGG | 0.538434 | 1_3:+74897321 | Msa0140640:CDS |
| TTGTTCTGCACTCGATAAGT+TGG | 0.539626 | 1_3:+74899575 | Msa0140640:CDS |
| CCCAAGTTGCCGACAGCAGA+TGG | 0.542895 | 1_3:+74898437 | Msa0140640:CDS |
| GCAAGGGGAATTCAACTTCA+GGG | 0.545056 | 1_3:+74899866 | Msa0140640:CDS |
| CCAAGAGAGTCTCTTGCCAT+TGG | 0.545489 | 1_3:-74898205 | None:intergenic |
| CAATCGCACTCAAACCTGGA+TGG | 0.554026 | 1_3:+74898267 | Msa0140640:CDS |
| ATGAGATGGAGATACTAACT+TGG | 0.555489 | 1_3:-74897543 | None:intergenic |
| GCAGGCAACAGATAAAGATT+GGG | 0.558763 | 1_3:+74897761 | Msa0140640:intron |
| ATGGCCATCTTGATGAGCAA+GGG | 0.560153 | 1_3:+74899850 | Msa0140640:CDS |
| AATCTGGACAATGGCACCAA+CGG | 0.563221 | 1_3:+74898121 | Msa0140640:CDS |
| GGTCACATTGATAGTCCTGT+GGG | 0.563973 | 1_3:+74899543 | Msa0140640:CDS |
| TTCTCAGTGATCGCCTGAGA+AGG | 0.568117 | 1_3:-74898292 | None:intergenic |
| TTCAACTTCAGGGGATTCAG+TGG | 0.569777 | 1_3:+74899876 | Msa0140640:CDS |
| CTAAATCCTGAGTTCGAGGA+TGG | 0.569968 | 1_3:+74897239 | Msa0140640:CDS |
| GGCTTATTGTCTCGCTACAA+AGG | 0.570792 | 1_3:+74899273 | Msa0140640:CDS |
| GATGGCCTGAATAATTGGAC+TGG | 0.575465 | 1_3:+74897257 | Msa0140640:CDS |
| AGGATTGGTTCCGGATCACA+TGG | 0.576001 | 1_3:+74898355 | Msa0140640:CDS |
| GATTGCAGTACATGAGTCCA+TGG | 0.578636 | 1_3:+74897292 | Msa0140640:CDS |
| AAGGCAATACCAACATTCTG+AGG | 0.578941 | 1_3:-74898379 | None:intergenic |
| CATGGCCATCTTGATGAGCA+AGG | 0.580614 | 1_3:+74899849 | Msa0140640:CDS |
| AAGAATGTAACGTCCACTCA+GGG | 0.582309 | 1_3:-74898239 | None:intergenic |
| TCACATGGCCCTCAGAATGT+TGG | 0.584688 | 1_3:+74898370 | Msa0140640:CDS |
| AATCGCACTCAAACCTGGAT+GGG | 0.586825 | 1_3:+74898268 | Msa0140640:CDS |
| AAGAATGTCAGTGCCTCCAG+GGG | 0.587074 | 1_3:-74897850 | None:intergenic |
| TTCACAAATAGGGTAGCAGA+TGG | 0.588059 | 1_3:-74899408 | None:intergenic |
| ACCGCGTGTAATTCCACCAA+TGG | 0.588150 | 1_3:+74898189 | Msa0140640:CDS |
| AGTGTGGTATACTGAATAGT+GGG | 0.591386 | 1_3:-74896776 | None:intergenic |
| AGCATTACACCATCAACAGC+AGG | 0.593920 | 1_3:-74899705 | None:intergenic |
| GTTGACGGCCAATGGGCCAA+CGG | 0.594155 | 1_3:+74898406 | Msa0140640:CDS |
| TTGAGAAACTATGGAAAACT+CGG | 0.594826 | 1_3:+74896708 | None:intergenic |
| TCGACAGCAATGTTCAACAA+TGG | 0.595009 | 1_3:+74899196 | Msa0140640:CDS |
| AAAGATTGGGCTCAAATGCA+GGG | 0.597935 | 1_3:+74897774 | Msa0140640:CDS |
| TTCCTGTCGATAGGCAGGCA+AGG | 0.599356 | 1_3:+74898569 | Msa0140640:CDS |
| GAACAAACAATAGGCCCCAC+AGG | 0.602172 | 1_3:-74899558 | None:intergenic |
| GGGTAGCAGATGGATCTAGC+TGG | 0.605427 | 1_3:-74899398 | None:intergenic |
| CAAGGGGAATTCAACTTCAG+GGG | 0.608694 | 1_3:+74899867 | Msa0140640:CDS |
| TTTGCAAGATCAAGGTGCAC+CGG | 0.608977 | 1_3:+74899500 | Msa0140640:CDS |
| TCACCAAATGTGCATTGTCG+CGG | 0.609213 | 1_3:-74899755 | None:intergenic |
| CCAATGGCAAGAGACTCTCT+TGG | 0.609407 | 1_3:+74898205 | Msa0140640:CDS |
| AAGTACAAGATAGACATTCG+CGG | 0.610751 | 1_3:+74899153 | Msa0140640:CDS |
| GAGTGGTTATCTCACACTCA+TGG | 0.613588 | 1_3:+74899831 | Msa0140640:CDS |
| AGGTCACATTGATAGTCCTG+TGG | 0.614882 | 1_3:+74899542 | Msa0140640:CDS |
| GAAGAATGTCAGTGCCTCCA+GGG | 0.615547 | 1_3:-74897851 | None:intergenic |
| CGTCCACTCAGGGGTTCATG+AGG | 0.617450 | 1_3:-74898229 | None:intergenic |
| AAGGTGAAATCAATGAAGCT+GGG | 0.619301 | 1_3:+74899784 | Msa0140640:CDS |
| GTTAACAATGAAATGTTGCA+TGG | 0.621327 | 1_3:+74899315 | Msa0140640:CDS |
| TATTAGAAGTACATGCCTCA+GGG | 0.623116 | 1_3:-74896753 | None:intergenic |
| GATTTCATGCCATCTGCTGT+CGG | 0.625782 | 1_3:-74898446 | None:intergenic |
| TGGCCATCTTGATGAGCAAG+GGG | 0.625929 | 1_3:+74899851 | Msa0140640:CDS |
| ATTCAGTGGTTTGTACAATG+TGG | 0.629627 | 1_3:+74899890 | Msa0140640:CDS |
| AGTGGAAGACACATCAAGCT+CGG | 0.630111 | 1_3:-74899625 | None:intergenic |
| TATTTGTTTAACTTTCACAA+AGG | 0.638165 | 1_3:-74898944 | None:intergenic |
| TGGACAATGGCACCAACGGG+TGG | 0.640136 | 1_3:+74898125 | Msa0140640:CDS |
| ACATTCGTTGTTGATAAGGG+CGG | 0.640206 | 1_3:+74899945 | Msa0140640:CDS |
| GACGGCCAATGGGCCAACGG+AGG | 0.644893 | 1_3:+74898409 | Msa0140640:CDS |
| GCACATTTGGTGAATGCAGA+AGG | 0.645010 | 1_3:+74899765 | Msa0140640:CDS |
| TATTTGGTAATGAGTTGAAG+TGG | 0.647331 | 1_3:+74899061 | Msa0140640:CDS |
| AAGCCTAACCTCAAAATCCG+GGG | 0.648361 | 1_3:-74897922 | None:intergenic |
| AGGCAATACCAACATTCTGA+GGG | 0.648383 | 1_3:-74898378 | None:intergenic |
| GGTCCTCATGAACCCCTGAG+TGG | 0.651275 | 1_3:+74898226 | Msa0140640:CDS |
| GAGAACAGCAATCTGGACAA+TGG | 0.655529 | 1_3:+74898112 | Msa0140640:CDS |
| GATCAAGGTGCACCGGTTGG+GGG | 0.658598 | 1_3:+74899507 | Msa0140640:CDS |
| CTCAAAGTACAATTACCAAG+AGG | 0.666083 | 1_3:-74898151 | None:intergenic |
| GCCATTGGTGGAATTACACG+CGG | 0.667698 | 1_3:-74898190 | None:intergenic |
| GTTGATGGTGTAATGCTATG+GGG | 0.671191 | 1_3:+74899711 | Msa0140640:CDS |
| AGCAGATGGCATGAAATCGG+TGG | 0.673951 | 1_3:+74898451 | Msa0140640:CDS |
| AGCCTAACCTCAAAATCCGG+GGG | 0.687022 | 1_3:-74897921 | None:intergenic |
| ACCAAGAGGAGACCACCCGT+TGG | 0.691945 | 1_3:-74898137 | None:intergenic |
| AGAATGTCAGTGCCTCCAGG+GGG | 0.711793 | 1_3:-74897849 | None:intergenic |
| TAGAAGTACATGCCTCAGGG+AGG | 0.715770 | 1_3:-74896750 | None:intergenic |
| GAATGTCAGTGCCTCCAGGG+GGG | 0.716647 | 1_3:-74897848 | None:intergenic |
| AGAATGTAACGTCCACTCAG+GGG | 0.726251 | 1_3:-74898238 | None:intergenic |
| CAATGCTGGAAACCTCCCTG+AGG | 0.737374 | 1_3:+74896738 | Msa0140640:CDS |
| TTTATGCGAGCAGACAGACA+AGG | 0.748258 | 1_3:+74898600 | Msa0140640:CDS |
| GTCACATTGATAGTCCTGTG+GGG | 0.751087 | 1_3:+74899544 | Msa0140640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAAATAAAATAATATTTGT+TGG | + | chr1_3:74900126-74900145 | Msa0140640:three_prime_UTR | 10.0% |
| !!! | GTTAAATATCTCTTATTTTT+TGG | + | chr1_3:74898768-74898787 | Msa0140640:intron | 15.0% |
| !!! | ATGTTACTTTAAAATTTTCT+GGG | + | chr1_3:74898902-74898921 | Msa0140640:CDS | 15.0% |
| !!! | GGTACATAATTATTTCATTT+TGG | - | chr1_3:74896852-74896871 | None:intergenic | 20.0% |
| !! | TAGAATATTTACAATCACTT+CGG | - | chr1_3:74897015-74897034 | None:intergenic | 20.0% |
| !!! | TTTGTTTTCTTCTGAAATAA+GGG | - | chr1_3:74897182-74897201 | None:intergenic | 20.0% |
| !!! | AATAAACAACTACTTTTGAA+GGG | - | chr1_3:74897821-74897840 | None:intergenic | 20.0% |
| !!! | AAATAAACAACTACTTTTGA+AGG | - | chr1_3:74897822-74897841 | None:intergenic | 20.0% |
| !! | TTCAAAAGTAGTTGTTTATT+TGG | + | chr1_3:74897821-74897840 | Msa0140640:CDS | 20.0% |
| !! | ATGTAAACAAAAACATTAGA+TGG | - | chr1_3:74898499-74898518 | None:intergenic | 20.0% |
| !!! | AATGTTTTTGTTTACATTCA+AGG | + | chr1_3:74898502-74898521 | Msa0140640:CDS | 20.0% |
| !!! | ACGAATTATTGAATTTTCAT+TGG | + | chr1_3:74898640-74898659 | Msa0140640:intron | 20.0% |
| !!! | GATGTTACTTTAAAATTTTC+TGG | + | chr1_3:74898901-74898920 | Msa0140640:CDS | 20.0% |
| !!! | TATTTGTTTAACTTTCACAA+AGG | - | chr1_3:74898947-74898966 | None:intergenic | 20.0% |
| !! | GAATAAAAATGATTTACTGA+CGG | + | chr1_3:74899230-74899249 | Msa0140640:CDS | 20.0% |
| !! | ATGATAATCATTCACAAATA+GGG | - | chr1_3:74899421-74899440 | None:intergenic | 20.0% |
| !! | TAATGTAATGAAAAGATTGA+TGG | + | chr1_3:74900087-74900106 | Msa0140640:three_prime_UTR | 20.0% |
| ! | TAAACATATGAAAAGTAGTG+TGG | - | chr1_3:74896795-74896814 | None:intergenic | 25.0% |
| !!! | ATGTGTTTGATTTGTTAACA+AGG | + | chr1_3:74896814-74896833 | Msa0140640:intron | 25.0% |
| !!! | TGTGTTTGATTTGTTAACAA+GGG | + | chr1_3:74896815-74896834 | Msa0140640:intron | 25.0% |
| !!! | TTGTTTTCTTCTGAAATAAG+GGG | - | chr1_3:74897181-74897200 | None:intergenic | 25.0% |
| !!! | GTTTGTTTTCTTCTGAAATA+AGG | - | chr1_3:74897183-74897202 | None:intergenic | 25.0% |
| ! | AGGTAAAGAAATAAATGAGA+TGG | - | chr1_3:74897560-74897579 | None:intergenic | 25.0% |
| ! | CATGTCATTATTCTATGTAT+AGG | - | chr1_3:74897580-74897599 | None:intergenic | 25.0% |
| ! | CATATCTTTAAATTGCTGAA+CGG | + | chr1_3:74897718-74897737 | Msa0140640:intron | 25.0% |
| !!! | ATAAACAACTACTTTTGAAG+GGG | - | chr1_3:74897820-74897839 | None:intergenic | 25.0% |
| ! | AAAGTAGTTGTTTATTTGGA+AGG | + | chr1_3:74897825-74897844 | Msa0140640:CDS | 25.0% |
| ! | AAAAGGGAATTTCAACTATA+AGG | + | chr1_3:74899101-74899120 | Msa0140640:CDS | 25.0% |
| ! | CATGATAATCATTCACAAAT+AGG | - | chr1_3:74899422-74899441 | None:intergenic | 25.0% |
| ! | AATGATTATCATGTTGAAGA+TGG | + | chr1_3:74899429-74899448 | Msa0140640:CDS | 25.0% |
| TCATGAAACAAAGAGAGAAA+TGG | - | chr1_3:74897119-74897138 | None:intergenic | 30.0% | |
| !!! | TGTTTTCTTCTGAAATAAGG+GGG | - | chr1_3:74897180-74897199 | None:intergenic | 30.0% |
| TATAATTGAGAACAGCAATC+TGG | + | chr1_3:74898105-74898124 | Msa0140640:CDS | 30.0% | |
| TAACATATCAAGTATCTGCT+TGG | + | chr1_3:74898329-74898348 | Msa0140640:CDS | 30.0% | |
| AACATATCAAGTATCTGCTT+GGG | + | chr1_3:74898330-74898349 | Msa0140640:CDS | 30.0% | |
| ! | TTCAAATTTTTCCTGTCGAT+AGG | + | chr1_3:74898560-74898579 | Msa0140640:CDS | 30.0% |
| ! | ATTGAATTTTCATTGGACGT+TGG | + | chr1_3:74898647-74898666 | Msa0140640:intron | 30.0% |
| TTAAAGTAACATCACGCTTA+CGG | - | chr1_3:74898894-74898913 | None:intergenic | 30.0% | |
| !!! | TACTTTAAAATTTTCTGGGC+TGG | + | chr1_3:74898906-74898925 | Msa0140640:CDS | 30.0% |
| ! | ATACAGAACGATTTTCCAAT+TGG | + | chr1_3:74898964-74898983 | Msa0140640:CDS | 30.0% |
| !! | TCTTTGTGCAACATTTTAAC+TGG | + | chr1_3:74899034-74899053 | Msa0140640:CDS | 30.0% |
| !!! | CTTTGTGCAACATTTTAACT+GGG | + | chr1_3:74899035-74899054 | Msa0140640:CDS | 30.0% |
| !! | TATTTGGTAATGAGTTGAAG+TGG | + | chr1_3:74899061-74899080 | Msa0140640:CDS | 30.0% |
| ! | TAGTTGAAATTCCCTTTTTG+TGG | - | chr1_3:74899099-74899118 | None:intergenic | 30.0% |
| GTTAACAATGAAATGTTGCA+TGG | + | chr1_3:74899315-74899334 | Msa0140640:CDS | 30.0% | |
| ! | TCATTTTATCAAGACAGACT+AGG | + | chr1_3:74899339-74899358 | Msa0140640:CDS | 30.0% |
| ! | ATCTGTTGTGTGTATTTTTC+TGG | - | chr1_3:74899474-74899493 | None:intergenic | 30.0% |
| !! | ATTCTTGATTTGCAAGATCA+AGG | + | chr1_3:74899492-74899511 | Msa0140640:CDS | 30.0% |
| ! | GGAAATTGTTACCTTTGAAA+AGG | + | chr1_3:74899911-74899930 | Msa0140640:CDS | 30.0% |
| CTTCAGAAACTTGTATTACA+TGG | + | chr1_3:74900000-74900019 | Msa0140640:three_prime_UTR | 30.0% | |
| ! | TATTAGAAGTACATGCCTCA+GGG | - | chr1_3:74896756-74896775 | None:intergenic | 35.0% |
| AGTGTGGTATACTGAATAGT+GGG | - | chr1_3:74896779-74896798 | None:intergenic | 35.0% | |
| TAGTGTGGTATACTGAATAG+TGG | - | chr1_3:74896780-74896799 | None:intergenic | 35.0% | |
| TAACAAAACGCAAACACGAA+TGG | - | chr1_3:74896873-74896892 | None:intergenic | 35.0% | |
| !! | AGAGCATTGGATTTGATTGT+AGG | + | chr1_3:74896922-74896941 | Msa0140640:intron | 35.0% |
| ! | CAAACTCATAACTTGTGTAG+TGG | + | chr1_3:74897069-74897088 | Msa0140640:intron | 35.0% |
| ! | TATGATGTTTTCATCGTCAG+TGG | - | chr1_3:74897219-74897238 | None:intergenic | 35.0% |
| ! | ACTGCTTTAGTTCGGATATT+TGG | + | chr1_3:74897440-74897459 | Msa0140640:CDS | 35.0% |
| ! | CTGCTTTAGTTCGGATATTT+GGG | + | chr1_3:74897441-74897460 | Msa0140640:CDS | 35.0% |
| ATGAGATGGAGATACTAACT+TGG | - | chr1_3:74897546-74897565 | None:intergenic | 35.0% | |
| TTGAAGGGGAATCATTTAGA+AGG | - | chr1_3:74897806-74897825 | None:intergenic | 35.0% | |
| !!! | GTATTGCAGAATGTTGCTTT+TGG | + | chr1_3:74898076-74898095 | Msa0140640:intron | 35.0% |
| CTCAAAGTACAATTACCAAG+AGG | - | chr1_3:74898154-74898173 | None:intergenic | 35.0% | |
| GGTAATTGTACTTTGAGCAT+CGG | + | chr1_3:74898157-74898176 | Msa0140640:CDS | 35.0% | |
| ATTAAGTCAACACCAGAAAC+TGG | - | chr1_3:74898529-74898548 | None:intergenic | 35.0% | |
| !! | AGTTTCTGGTGTTGACTTAA+TGG | + | chr1_3:74898528-74898547 | Msa0140640:CDS | 35.0% |
| !!! | CATTTTAACTGGGCTGTATT+TGG | + | chr1_3:74899045-74899064 | Msa0140640:CDS | 35.0% |
| ! | GTAATGAGTTGAAGTGGTAT+TGG | + | chr1_3:74899067-74899086 | Msa0140640:CDS | 35.0% |
| AAGTACAAGATAGACATTCG+CGG | + | chr1_3:74899153-74899172 | Msa0140640:CDS | 35.0% | |
| ! | ATAAGCCAGTTAAGCGATTT+TGG | - | chr1_3:74899260-74899279 | None:intergenic | 35.0% |
| TTATCAAGACAGACTAGGTA+AGG | + | chr1_3:74899344-74899363 | Msa0140640:CDS | 35.0% | |
| ACAGACTAGGTAAGGATATA+AGG | + | chr1_3:74899352-74899371 | Msa0140640:CDS | 35.0% | |
| CAGACTAGGTAAGGATATAA+GGG | + | chr1_3:74899353-74899372 | Msa0140640:CDS | 35.0% | |
| TCCACTAATGAATATGTTCG+AGG | + | chr1_3:74899642-74899661 | Msa0140640:CDS | 35.0% | |
| !! | TGTTGATGGTGTAATGCTAT+GGG | + | chr1_3:74899710-74899729 | Msa0140640:CDS | 35.0% |
| AAGGTGAAATCAATGAAGCT+GGG | + | chr1_3:74899784-74899803 | Msa0140640:CDS | 35.0% | |
| TCCTTGATCTTAAAGAAGAG+TGG | + | chr1_3:74899814-74899833 | Msa0140640:CDS | 35.0% | |
| !! | ACCACTCTTCTTTAAGATCA+AGG | - | chr1_3:74899818-74899837 | None:intergenic | 35.0% |
| ! | ATTCAGTGGTTTGTACAATG+TGG | + | chr1_3:74899890-74899909 | Msa0140640:CDS | 35.0% |
| ! | CTGGCAAATTACCTTTTCAA+AGG | - | chr1_3:74899925-74899944 | None:intergenic | 35.0% |
| ! | CAGACATTCGTTGTTGATAA+GGG | + | chr1_3:74899942-74899961 | Msa0140640:CDS | 35.0% |
| !! | AGATTGATGGACTGTCATAT+TGG | + | chr1_3:74900100-74900119 | Msa0140640:three_prime_UTR | 35.0% |
| ! | GTATTAGAAGTACATGCCTC+AGG | - | chr1_3:74896757-74896776 | None:intergenic | 40.0% |
| ! | TTTTGTTAAGCCGTTCCCTT+TGG | + | chr1_3:74896885-74896904 | Msa0140640:intron | 40.0% |
| TATGTCCTACGATAGCCAAA+GGG | - | chr1_3:74896903-74896922 | None:intergenic | 40.0% | |
| TATCGTAGGACATAGAGCAT+TGG | + | chr1_3:74896909-74896928 | Msa0140640:intron | 40.0% | |
| CATACTAAATCCTGAGTTCG+AGG | + | chr1_3:74897235-74897254 | Msa0140640:CDS | 40.0% | |
| CTCTTCCAGTCCAATTATTC+AGG | - | chr1_3:74897265-74897284 | None:intergenic | 40.0% | |
| ! | CTGAATAATTGGACTGGAAG+AGG | + | chr1_3:74897263-74897282 | Msa0140640:CDS | 40.0% |
| TACATGAGTCCATGGCAAAT+GGG | + | chr1_3:74897300-74897319 | Msa0140640:CDS | 40.0% | |
| ! | AAGGATTTTCCCATTTGCCA+TGG | - | chr1_3:74897312-74897331 | None:intergenic | 40.0% |
| GGGAAAATCCTTCCAAAATC+CGG | + | chr1_3:74897320-74897339 | Msa0140640:CDS | 40.0% | |
| GGAAAATCCTTCCAAAATCC+GGG | + | chr1_3:74897321-74897340 | Msa0140640:CDS | 40.0% | |
| GGAATTCAGCAAGAAATCAC+TGG | + | chr1_3:74897386-74897405 | Msa0140640:CDS | 40.0% | |
| AACTAAAGCAGTGACCTCAT+AGG | - | chr1_3:74897432-74897451 | None:intergenic | 40.0% | |
| ATGAGGTCACTGCTTTAGTT+CGG | + | chr1_3:74897432-74897451 | Msa0140640:CDS | 40.0% | |
| ATATACTGCTCTCGAAGATC+TGG | - | chr1_3:74897515-74897534 | None:intergenic | 40.0% | |
| GATCTTCGAGAGCAGTATAT+AGG | + | chr1_3:74897515-74897534 | Msa0140640:CDS | 40.0% | |
| GAATAATGACATGACTGCTG+TGG | + | chr1_3:74897587-74897606 | Msa0140640:intron | 40.0% | |
| !! | GACTGCTGTGGTTATTTTCT+TGG | + | chr1_3:74897599-74897618 | Msa0140640:intron | 40.0% |
| TTTGCGATACTAAAGTGTGC+AGG | + | chr1_3:74897743-74897762 | Msa0140640:intron | 40.0% | |
| TGCAGGCAACAGATAAAGAT+TGG | + | chr1_3:74897760-74897779 | Msa0140640:intron | 40.0% | |
| GCAGGCAACAGATAAAGATT+GGG | + | chr1_3:74897761-74897780 | Msa0140640:intron | 40.0% | |
| TAAAGATTGGGCTCAAATGC+AGG | + | chr1_3:74897773-74897792 | Msa0140640:CDS | 40.0% | |
| AAAGATTGGGCTCAAATGCA+GGG | + | chr1_3:74897774-74897793 | Msa0140640:CDS | 40.0% | |
| AAAGCCTAACCTCAAAATCC+GGG | - | chr1_3:74897926-74897945 | None:intergenic | 40.0% | |
| GAAAGCCTAACCTCAAAATC+CGG | - | chr1_3:74897927-74897946 | None:intergenic | 40.0% | |
| !! | CTATGATGCCTTTTGTTGTG+TGG | + | chr1_3:74898016-74898035 | Msa0140640:intron | 40.0% |
| AGAATCGACCACACAACAAA+AGG | - | chr1_3:74898027-74898046 | None:intergenic | 40.0% | |
| AAGAATGTAACGTCCACTCA+GGG | - | chr1_3:74898242-74898261 | None:intergenic | 40.0% | |
| AGGCAATACCAACATTCTGA+GGG | - | chr1_3:74898381-74898400 | None:intergenic | 40.0% | |
| AAGGCAATACCAACATTCTG+AGG | - | chr1_3:74898382-74898401 | None:intergenic | 40.0% | |
| ! | GGTATTGCCTTTAGTGTTGA+CGG | + | chr1_3:74898391-74898410 | Msa0140640:CDS | 40.0% |
| TACATTCAAGGTCCAGTTTC+TGG | + | chr1_3:74898514-74898533 | Msa0140640:CDS | 40.0% | |
| ! | AATTTTTCCTGTCGATAGGC+AGG | + | chr1_3:74898564-74898583 | Msa0140640:CDS | 40.0% |
| CTATTGATGCACGATCCAAT+TGG | - | chr1_3:74898982-74899001 | None:intergenic | 40.0% | |
| TATTGGACAGAGCCACAAAA+AGG | + | chr1_3:74899084-74899103 | Msa0140640:CDS | 40.0% | |
| ATTGGACAGAGCCACAAAAA+GGG | + | chr1_3:74899085-74899104 | Msa0140640:CDS | 40.0% | |
| TCGACAGCAATGTTCAACAA+TGG | + | chr1_3:74899196-74899215 | Msa0140640:CDS | 40.0% | |
| CGACAGCAATGTTCAACAAT+GGG | + | chr1_3:74899197-74899216 | Msa0140640:CDS | 40.0% | |
| TTCACAAATAGGGTAGCAGA+TGG | - | chr1_3:74899411-74899430 | None:intergenic | 40.0% | |
| TCGAGTGCAGAACAAACAAT+AGG | - | chr1_3:74899570-74899589 | None:intergenic | 40.0% | |
| TTGTTCTGCACTCGATAAGT+TGG | + | chr1_3:74899575-74899594 | Msa0140640:CDS | 40.0% | |
| CTACTCTTGGTCAACCAATA+TGG | + | chr1_3:74899598-74899617 | Msa0140640:CDS | 40.0% | |
| TCAAGCTCGGTAAACCATAT+TGG | - | chr1_3:74899615-74899634 | None:intergenic | 40.0% | |
| GCCTCGAACATATTCATTAG+TGG | - | chr1_3:74899646-74899665 | None:intergenic | 40.0% | |
| ATATGTTCGAGGCGATGATT+TGG | + | chr1_3:74899653-74899672 | Msa0140640:CDS | 40.0% | |
| !! | CTGTTGATGGTGTAATGCTA+TGG | + | chr1_3:74899709-74899728 | Msa0140640:CDS | 40.0% |
| !! | GTTGATGGTGTAATGCTATG+GGG | + | chr1_3:74899711-74899730 | Msa0140640:CDS | 40.0% |
| ! | TGTAATGCTATGGGGCTTTT+GGG | + | chr1_3:74899719-74899738 | Msa0140640:CDS | 40.0% |
| GAAGGTGAAATCAATGAAGC+TGG | + | chr1_3:74899783-74899802 | Msa0140640:CDS | 40.0% | |
| CCTTATCAACAACGAATGTC+TGG | - | chr1_3:74899944-74899963 | None:intergenic | 40.0% | |
| CCAGACATTCGTTGTTGATA+AGG | + | chr1_3:74899941-74899960 | Msa0140640:CDS | 40.0% | |
| ! | ACATTCGTTGTTGATAAGGG+CGG | + | chr1_3:74899945-74899964 | Msa0140640:CDS | 40.0% |
| AACTCGGAGATGATCAATGC+TGG | + | chr1_3:74896724-74896743 | Msa0140640:CDS | 45.0% | |
| CTATGTCCTACGATAGCCAA+AGG | - | chr1_3:74896904-74896923 | None:intergenic | 45.0% | |
| CTAAATCCTGAGTTCGAGGA+TGG | + | chr1_3:74897239-74897258 | Msa0140640:CDS | 45.0% | |
| TCGAGGATGGCCTGAATAAT+TGG | + | chr1_3:74897252-74897271 | Msa0140640:CDS | 45.0% | |
| GATGGCCTGAATAATTGGAC+TGG | + | chr1_3:74897257-74897276 | Msa0140640:CDS | 45.0% | |
| GATTGCAGTACATGAGTCCA+TGG | + | chr1_3:74897292-74897311 | Msa0140640:CDS | 45.0% | |
| GTACATGAGTCCATGGCAAA+TGG | + | chr1_3:74897299-74897318 | Msa0140640:CDS | 45.0% | |
| ! | AGAACTTCCCGGATTTTGGA+AGG | - | chr1_3:74897331-74897350 | None:intergenic | 45.0% |
| ! | GCAAAGAACTTCCCGGATTT+TGG | - | chr1_3:74897335-74897354 | None:intergenic | 45.0% |
| TGCAGATGCAAAGAACTTCC+CGG | - | chr1_3:74897342-74897361 | None:intergenic | 45.0% | |
| AAGCCTAACCTCAAAATCCG+GGG | - | chr1_3:74897925-74897944 | None:intergenic | 45.0% | |
| GAGAACAGCAATCTGGACAA+TGG | + | chr1_3:74898112-74898131 | Msa0140640:CDS | 45.0% | |
| AATCTGGACAATGGCACCAA+CGG | + | chr1_3:74898121-74898140 | Msa0140640:CDS | 45.0% | |
| !! | TGTACTTTGAGCATCGGAAC+TGG | + | chr1_3:74898163-74898182 | Msa0140640:CDS | 45.0% |
| AGAATGTAACGTCCACTCAG+GGG | - | chr1_3:74898241-74898260 | None:intergenic | 45.0% | |
| CAAGAATGTAACGTCCACTC+AGG | - | chr1_3:74898243-74898262 | None:intergenic | 45.0% | |
| TAACCAATCGCACTCAAACC+TGG | + | chr1_3:74898263-74898282 | Msa0140640:CDS | 45.0% | |
| AATCGCACTCAAACCTGGAT+GGG | + | chr1_3:74898268-74898287 | Msa0140640:CDS | 45.0% | |
| ATCAAGTATCTGCTTGGGTC+AGG | + | chr1_3:74898335-74898354 | Msa0140640:CDS | 45.0% | |
| !! | CTTTAGTGTTGACGGCCAAT+GGG | + | chr1_3:74898399-74898418 | Msa0140640:CDS | 45.0% |
| GATTTCATGCCATCTGCTGT+CGG | - | chr1_3:74898449-74898468 | None:intergenic | 45.0% | |
| GACAGCAGATGGCATGAAAT+CGG | + | chr1_3:74898448-74898467 | Msa0140640:CDS | 45.0% | |
| !! | GGTGTTGACTTAATGGTTGC+TGG | + | chr1_3:74898535-74898554 | Msa0140640:CDS | 45.0% |
| TTTATGCGAGCAGACAGACA+AGG | + | chr1_3:74898600-74898619 | Msa0140640:CDS | 45.0% | |
| TTCGCGGACATTGTATCTTC+TGG | + | chr1_3:74899169-74899188 | Msa0140640:CDS | 45.0% | |
| TCGCGGACATTGTATCTTCT+GGG | + | chr1_3:74899170-74899189 | Msa0140640:CDS | 45.0% | |
| GCTGTCCAAAATCGCTTAAC+TGG | + | chr1_3:74899252-74899271 | Msa0140640:CDS | 45.0% | |
| GGCTTATTGTCTCGCTACAA+AGG | + | chr1_3:74899273-74899292 | Msa0140640:CDS | 45.0% | |
| TTTGCAAGATCAAGGTGCAC+CGG | + | chr1_3:74899500-74899519 | Msa0140640:CDS | 45.0% | |
| TGAATTCCTATTCCCCCAAC+CGG | - | chr1_3:74899522-74899541 | None:intergenic | 45.0% | |
| GTTGGGGGAATAGGAATTCA+AGG | + | chr1_3:74899522-74899541 | Msa0140640:CDS | 45.0% | |
| ! | AGGTCACATTGATAGTCCTG+TGG | + | chr1_3:74899542-74899561 | Msa0140640:CDS | 45.0% |
| ! | GGTCACATTGATAGTCCTGT+GGG | + | chr1_3:74899543-74899562 | Msa0140640:CDS | 45.0% |
| ! | GTCACATTGATAGTCCTGTG+GGG | + | chr1_3:74899544-74899563 | Msa0140640:CDS | 45.0% |
| ! | CTCGATAAGTTGGCTACTCT+TGG | + | chr1_3:74899585-74899604 | Msa0140640:CDS | 45.0% |
| AGTGGAAGACACATCAAGCT+CGG | - | chr1_3:74899628-74899647 | None:intergenic | 45.0% | |
| AGTTATGTTGCGCGAAGCTA+TGG | + | chr1_3:74899677-74899696 | Msa0140640:CDS | 45.0% | |
| AGCATTACACCATCAACAGC+AGG | - | chr1_3:74899708-74899727 | None:intergenic | 45.0% | |
| ! | GTGTAATGCTATGGGGCTTT+TGG | + | chr1_3:74899718-74899737 | Msa0140640:CDS | 45.0% |
| TCACCAAATGTGCATTGTCG+CGG | - | chr1_3:74899758-74899777 | None:intergenic | 45.0% | |
| ! | GCACATTTGGTGAATGCAGA+AGG | + | chr1_3:74899765-74899784 | Msa0140640:CDS | 45.0% |
| GAGTGGTTATCTCACACTCA+TGG | + | chr1_3:74899831-74899850 | Msa0140640:CDS | 45.0% | |
| ATGGCCATCTTGATGAGCAA+GGG | + | chr1_3:74899850-74899869 | Msa0140640:CDS | 45.0% | |
| ATTCCCCTTGCTCATCAAGA+TGG | - | chr1_3:74899857-74899876 | None:intergenic | 45.0% | |
| AGCAAGGGGAATTCAACTTC+AGG | + | chr1_3:74899865-74899884 | Msa0140640:CDS | 45.0% | |
| GCAAGGGGAATTCAACTTCA+GGG | + | chr1_3:74899866-74899885 | Msa0140640:CDS | 45.0% | |
| CAAGGGGAATTCAACTTCAG+GGG | + | chr1_3:74899867-74899886 | Msa0140640:CDS | 45.0% | |
| TTCAACTTCAGGGGATTCAG+TGG | + | chr1_3:74899876-74899895 | Msa0140640:CDS | 45.0% | |
| ! | TAGAAGTACATGCCTCAGGG+AGG | - | chr1_3:74896753-74896772 | None:intergenic | 50.0% |
| CCTACGATAGCCAAAGGGAA+CGG | - | chr1_3:74896898-74896917 | None:intergenic | 50.0% | |
| CAACTGAACGCACACAAAGC+TGG | + | chr1_3:74897360-74897379 | Msa0140640:CDS | 50.0% | |
| GAACGCACACAAAGCTGGAA+TGG | + | chr1_3:74897365-74897384 | Msa0140640:CDS | 50.0% | |
| AAGAATGTCAGTGCCTCCAG+GGG | - | chr1_3:74897853-74897872 | None:intergenic | 50.0% | |
| GAAGAATGTCAGTGCCTCCA+GGG | - | chr1_3:74897854-74897873 | None:intergenic | 50.0% | |
| AGAAGAATGTCAGTGCCTCC+AGG | - | chr1_3:74897855-74897874 | None:intergenic | 50.0% | |
| AGCCTAACCTCAAAATCCGG+GGG | - | chr1_3:74897924-74897943 | None:intergenic | 50.0% | |
| ATCTGGACAATGGCACCAAC+GGG | + | chr1_3:74898122-74898141 | Msa0140640:CDS | 50.0% | |
| ACCGCGTGTAATTCCACCAA+TGG | + | chr1_3:74898189-74898208 | Msa0140640:CDS | 50.0% | |
| GCCATTGGTGGAATTACACG+CGG | - | chr1_3:74898193-74898212 | None:intergenic | 50.0% | |
| AGAGAGTCTCTTGCCATTGG+TGG | - | chr1_3:74898205-74898224 | None:intergenic | 50.0% | |
| CCAAGAGAGTCTCTTGCCAT+TGG | - | chr1_3:74898208-74898227 | None:intergenic | 50.0% | |
| CCAATGGCAAGAGACTCTCT+TGG | + | chr1_3:74898205-74898224 | Msa0140640:CDS | 50.0% | |
| CATCCAGGTTTGAGTGCGAT+TGG | - | chr1_3:74898269-74898288 | None:intergenic | 50.0% | |
| CAATCGCACTCAAACCTGGA+TGG | + | chr1_3:74898267-74898286 | Msa0140640:CDS | 50.0% | |
| TTCTCAGTGATCGCCTGAGA+AGG | - | chr1_3:74898295-74898314 | None:intergenic | 50.0% | |
| GTATCTGCTTGGGTCAGGAT+TGG | + | chr1_3:74898340-74898359 | Msa0140640:CDS | 50.0% | |
| !! | AGGATTGGTTCCGGATCACA+TGG | + | chr1_3:74898355-74898374 | Msa0140640:CDS | 50.0% |
| ! | ATTCTGAGGGCCATGTGATC+CGG | - | chr1_3:74898368-74898387 | None:intergenic | 50.0% |
| TCACATGGCCCTCAGAATGT+TGG | + | chr1_3:74898370-74898389 | Msa0140640:CDS | 50.0% | |
| CCATTGGCCGTCAACACTAA+AGG | - | chr1_3:74898401-74898420 | None:intergenic | 50.0% | |
| !! | CCTTTAGTGTTGACGGCCAA+TGG | + | chr1_3:74898398-74898417 | Msa0140640:CDS | 50.0% |
| AGCAGATGGCATGAAATCGG+TGG | + | chr1_3:74898451-74898470 | Msa0140640:CDS | 50.0% | |
| !! | AAGATCAAGGTGCACCGGTT+GGG | + | chr1_3:74899505-74899524 | Msa0140640:CDS | 50.0% |
| GAACAAACAATAGGCCCCAC+AGG | - | chr1_3:74899561-74899580 | None:intergenic | 50.0% | |
| ATGGCACATCCTGCTGTTGA+TGG | + | chr1_3:74899696-74899715 | Msa0140640:CDS | 50.0% | |
| CATGGCCATCTTGATGAGCA+AGG | + | chr1_3:74899849-74899868 | Msa0140640:CDS | 50.0% | |
| TGGCCATCTTGATGAGCAAG+GGG | + | chr1_3:74899851-74899870 | Msa0140640:CDS | 50.0% | |
| TGATAAGGGCGGCTCTTCAT+TGG | + | chr1_3:74899956-74899975 | Msa0140640:CDS | 50.0% | |
| CAATGCTGGAAACCTCCCTG+AGG | + | chr1_3:74896738-74896757 | Msa0140640:CDS | 55.0% | |
| CCGTTCCCTTTGGCTATCGT+AGG | + | chr1_3:74896895-74896914 | Msa0140640:intron | 55.0% | |
| TTCAGGCCATCCTCGAACTC+AGG | - | chr1_3:74897248-74897267 | None:intergenic | 55.0% | |
| GTTTATTTGGAAGGCCCCCC+TGG | + | chr1_3:74897834-74897853 | Msa0140640:CDS | 55.0% | |
| AGAATGTCAGTGCCTCCAGG+GGG | - | chr1_3:74897852-74897871 | None:intergenic | 55.0% | |
| !! | TCAAAATCCGGGGGTGTCGA+AGG | - | chr1_3:74897915-74897934 | None:intergenic | 55.0% |
| ! | TTCGACACCCCCGGATTTTG+AGG | + | chr1_3:74897914-74897933 | Msa0140640:CDS | 55.0% |
| !!! | CACCCCCGGATTTTGAGGTT+AGG | + | chr1_3:74897919-74897938 | Msa0140640:intron | 55.0% |
| AACCTGGATGGGTCCTTCTC+AGG | + | chr1_3:74898279-74898298 | Msa0140640:CDS | 55.0% | |
| !! | GCTTGGGTCAGGATTGGTTC+CGG | + | chr1_3:74898346-74898365 | Msa0140640:CDS | 55.0% |
| AACTTGGGTCTGTCCTCCGT+TGG | - | chr1_3:74898425-74898444 | None:intergenic | 55.0% | |
| CCATCTGCTGTCGGCAACTT+GGG | - | chr1_3:74898440-74898459 | None:intergenic | 55.0% | |
| TTCCTGTCGATAGGCAGGCA+AGG | + | chr1_3:74898569-74898588 | Msa0140640:CDS | 55.0% | |
| AACCTTGCCTGCCTATCGAC+AGG | - | chr1_3:74898574-74898593 | None:intergenic | 55.0% | |
| GGGTAGCAGATGGATCTAGC+TGG | - | chr1_3:74899401-74899420 | None:intergenic | 55.0% | |
| ! | CAAGATCAAGGTGCACCGGT+TGG | + | chr1_3:74899504-74899523 | Msa0140640:CDS | 55.0% |
| !! | AGATCAAGGTGCACCGGTTG+GGG | + | chr1_3:74899506-74899525 | Msa0140640:CDS | 55.0% |
| GAGCCGCGACAATGCACATT+TGG | + | chr1_3:74899752-74899771 | Msa0140640:CDS | 55.0% | |
| GCAGCGCAAGCTTGCCTATG+AGG | + | chr1_3:74897415-74897434 | Msa0140640:CDS | 60.0% | |
| TATTTGGAAGGCCCCCCTGG+AGG | + | chr1_3:74897837-74897856 | Msa0140640:CDS | 60.0% | |
| GAATGTCAGTGCCTCCAGGG+GGG | - | chr1_3:74897851-74897870 | None:intergenic | 60.0% | |
| ATCACCACCTTCGACACCCC+CGG | + | chr1_3:74897905-74897924 | Msa0140640:CDS | 60.0% | |
| !! | AAATCCGGGGGTGTCGAAGG+TGG | - | chr1_3:74897912-74897931 | None:intergenic | 60.0% |
| TGGACAATGGCACCAACGGG+TGG | + | chr1_3:74898125-74898144 | Msa0140640:CDS | 60.0% | |
| ACCAACGGGTGGTCTCCTCT+TGG | + | chr1_3:74898136-74898155 | Msa0140640:CDS | 60.0% | |
| ACCAAGAGGAGACCACCCGT+TGG | - | chr1_3:74898140-74898159 | None:intergenic | 60.0% | |
| GGTCCTCATGAACCCCTGAG+TGG | + | chr1_3:74898226-74898245 | Msa0140640:CDS | 60.0% | |
| CGTCCACTCAGGGGTTCATG+AGG | - | chr1_3:74898232-74898251 | None:intergenic | 60.0% | |
| GTTGACGGCCAATGGGCCAA+CGG | + | chr1_3:74898406-74898425 | Msa0140640:CDS | 60.0% | |
| TCTGTCCTCCGTTGGCCCAT+TGG | - | chr1_3:74898417-74898436 | None:intergenic | 60.0% | |
| CCCAAGTTGCCGACAGCAGA+TGG | + | chr1_3:74898437-74898456 | Msa0140640:CDS | 60.0% | |
| GCCATCTGCTGTCGGCAACT+TGG | - | chr1_3:74898441-74898460 | None:intergenic | 60.0% | |
| !! | GATCAAGGTGCACCGGTTGG+GGG | + | chr1_3:74899507-74899526 | Msa0140640:CDS | 60.0% |
| CGCCTGAGAAGGACCCATCC+AGG | - | chr1_3:74898284-74898303 | None:intergenic | 65.0% | |
| !! | GGTGCACCGGTTGGGGGAAT+AGG | + | chr1_3:74899513-74899532 | Msa0140640:CDS | 65.0% |
| GACGGCCAATGGGCCAACGG+AGG | + | chr1_3:74898409-74898428 | Msa0140640:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 74896718 | 74900158 | 74896718 | ID=Msa0140640;Name=Msa0140640 |
| chr1_3 | mRNA | 74896718 | 74900158 | 74896718 | ID=Msa0140640-mRNA-1;Parent=Msa0140640;Name=Msa0140640-mRNA-1;_AED=0.04;_eAED=0.06;_QI=0|0.5|0.4|1|1|1|5|160|748 |
| chr1_3 | exon | 74896718 | 74896786 | 74896718 | ID=Msa0140640-mRNA-1:exon:26198;Parent=Msa0140640-mRNA-1 |
| chr1_3 | exon | 74897191 | 74897550 | 74897191 | ID=Msa0140640-mRNA-1:exon:26199;Parent=Msa0140640-mRNA-1 |
| chr1_3 | exon | 74897765 | 74897935 | 74897765 | ID=Msa0140640-mRNA-1:exon:26200;Parent=Msa0140640-mRNA-1 |
| chr1_3 | exon | 74898085 | 74898621 | 74898085 | ID=Msa0140640-mRNA-1:exon:26201;Parent=Msa0140640-mRNA-1 |
| chr1_3 | exon | 74898889 | 74900158 | 74898889 | ID=Msa0140640-mRNA-1:exon:26202;Parent=Msa0140640-mRNA-1 |
| chr1_3 | CDS | 74896718 | 74896786 | 74896718 | ID=Msa0140640-mRNA-1:cds;Parent=Msa0140640-mRNA-1 |
| chr1_3 | CDS | 74897191 | 74897550 | 74897191 | ID=Msa0140640-mRNA-1:cds;Parent=Msa0140640-mRNA-1 |
| chr1_3 | CDS | 74897765 | 74897935 | 74897765 | ID=Msa0140640-mRNA-1:cds;Parent=Msa0140640-mRNA-1 |
| chr1_3 | CDS | 74898085 | 74898621 | 74898085 | ID=Msa0140640-mRNA-1:cds;Parent=Msa0140640-mRNA-1 |
| chr1_3 | CDS | 74898889 | 74899998 | 74898889 | ID=Msa0140640-mRNA-1:cds;Parent=Msa0140640-mRNA-1 |
| chr1_3 | three_prime_UTR | 74899999 | 74900158 | 74899999 | ID=Msa0140640-mRNA-1:three_prime_utr;Parent=Msa0140640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
