AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0381710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381710 MtrunA17_Chr3g0135831 96.063 381 12 1 1 381 1 378 0.0 753
Msa0381710 MtrunA17_Chr7g0260331 54.924 264 112 2 8 264 8 271 6.12e-94 285
Msa0381710 MtrunA17_Chr1g0204741 62.963 216 73 4 36 246 27 240 9.73e-92 278
Msa0381710 MtrunA17_Chr5g0410881 55.357 224 84 4 36 247 21 240 1.99e-80 255
Msa0381710 MtrunA17_Chr4g0071051 40.431 371 177 11 24 376 76 420 6.44e-77 243
Msa0381710 MtrunA17_Chr4g0039891 54.808 208 86 2 48 247 11 218 3.23e-73 236
Msa0381710 MtrunA17_Chr1g0185131 44.224 303 143 8 36 331 19 302 3.68e-73 231
Msa0381710 MtrunA17_Chr6g0485571 45.274 201 106 2 49 249 11 207 6.18e-53 179
Msa0381710 MtrunA17_Chr8g0379701 40.517 232 130 2 48 275 11 238 4.90e-49 170
Msa0381710 MtrunA17_Chr8g0392001 45.876 194 98 2 49 235 22 215 5.43e-49 169
Msa0381710 MtrunA17_Chr8g0378061 43.284 201 104 5 50 247 23 216 5.54e-46 164
Msa0381710 MtrunA17_Chr2g0330821 40.933 193 110 1 43 235 73 261 5.71e-46 161
Msa0381710 MtrunA17_Chr6g0467041 42.365 203 107 5 49 248 22 217 6.72e-46 160
Msa0381710 MtrunA17_Chr2g0284481 41.243 177 101 1 48 221 14 190 2.00e-43 155
Msa0381710 MtrunA17_Chr5g0397881 62.766 94 35 0 47 140 22 115 5.56e-38 140
Msa0381710 MtrunA17_Chr7g0257331 45.062 162 76 3 40 188 9 170 1.76e-37 135
Msa0381710 MtrunA17_Chr3g0134031 56.757 111 43 1 43 153 18 123 8.26e-37 137
Msa0381710 MtrunA17_Chr5g0402291 55.882 102 45 0 46 147 6 107 8.93e-37 135
Msa0381710 MtrunA17_Chr6g0472421 58.511 94 39 0 47 140 31 124 9.08e-35 130
Msa0381710 MtrunA17_Chr1g0203601 54.206 107 49 0 47 153 16 122 1.28e-34 129
Msa0381710 MtrunA17_Chr1g0179311 38.537 205 120 4 109 310 14 215 4.45e-34 129
Msa0381710 MtrunA17_Chr8g0375041 52.727 110 50 1 44 153 4 111 5.25e-34 126
Msa0381710 MtrunA17_Chr5g0441531 60.638 94 37 0 47 140 23 116 6.83e-34 126
Msa0381710 MtrunA17_Chr4g0047421 36.957 184 101 5 28 204 17 192 4.78e-29 112
Msa0381710 MtrunA17_Chr1g0179321 63.514 74 27 0 35 108 35 108 3.02e-26 101
Msa0381710 MtrunA17_Chr4g0023771 51.429 70 33 1 40 108 6 75 6.52e-18 79.0
Msa0381710 MtrunA17_Chr2g0330841 32.051 156 97 4 96 247 26 176 1.71e-16 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0381710 AT2G26150.1 51.862 349 124 7 36 379 31 340 2.57e-121 355
Msa0381710 AT2G26150.4 51.862 349 124 7 36 379 31 340 2.57e-121 355
Msa0381710 AT3G22830.1 44.258 357 158 8 36 359 48 396 5.94e-89 274
Msa0381710 AT3G51910.1 55.357 224 79 3 39 256 19 227 7.04e-77 239
Msa0381710 AT4G17750.1 51.570 223 91 2 47 252 50 272 3.11e-76 244
Msa0381710 AT1G32330.1 44.816 299 146 7 15 298 3 297 2.56e-75 241
Msa0381710 AT1G32330.2 44.816 299 146 7 15 298 3 297 3.19e-75 241
Msa0381710 AT5G16820.1 50.655 229 97 3 27 244 10 233 1.37e-74 239
Msa0381710 AT5G16820.2 50.655 229 97 3 27 244 10 233 1.37e-74 239
Msa0381710 AT3G02990.1 53.589 209 86 3 48 247 22 228 2.05e-73 236
Msa0381710 AT3G63350.1 43.492 315 118 7 25 331 4 266 1.80e-70 223
Msa0381710 AT5G43840.1 47.863 234 105 3 36 269 6 222 2.60e-69 219
Msa0381710 AT2G26150.3 44.404 277 108 8 109 379 49 285 5.76e-68 216
Msa0381710 AT2G26150.2 44.404 277 108 8 109 379 49 285 5.76e-68 216
Msa0381710 AT5G03720.2 45.815 227 111 4 17 240 24 241 1.09e-60 201
Msa0381710 AT5G03720.1 45.815 227 111 4 17 240 24 241 1.09e-60 201
Msa0381710 AT1G67970.1 47.872 188 97 1 49 235 19 206 5.74e-56 188
Msa0381710 AT5G54070.1 42.857 217 109 3 42 257 63 265 1.45e-55 186
Msa0381710 AT4G13980.1 40.201 199 114 2 50 247 24 218 3.98e-48 170
Msa0381710 AT3G24520.1 45.411 207 86 5 49 251 17 200 1.56e-47 165
Msa0381710 AT5G45710.3 38.725 204 118 2 48 251 12 208 2.92e-37 138
Msa0381710 AT5G45710.1 38.725 204 118 2 48 251 12 208 2.92e-37 138
Msa0381710 AT4G36990.1 52.632 114 48 1 47 160 12 119 1.53e-36 134
Msa0381710 AT1G46264.1 38.191 199 70 3 39 187 24 219 2.83e-36 135
Msa0381710 AT2G41690.1 48.889 135 52 2 6 140 14 131 5.48e-36 132
Msa0381710 AT4G18880.1 44.000 175 97 1 48 221 14 188 1.19e-35 135
Msa0381710 AT5G62020.1 55.882 102 45 0 47 148 21 122 1.79e-35 132
Msa0381710 AT4G11660.1 58.511 94 39 0 47 140 57 150 2.10e-34 131
Msa0381710 AT4G18870.1 34.711 121 75 1 49 165 146 266 1.31e-20 91.3
Msa0381710 AT4G18870.1 43.678 87 48 1 50 136 14 99 6.88e-18 83.6
Msa0381710 AT1G77570.1 36.667 90 54 2 50 136 27 116 6.34e-13 66.2

Find 182 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCTTTATCCATAAATT+TGG 0.091146 3_1:+83933977 Msa0381710:three_prime_UTR
GAATCAACGCCCCAAATTTA+TGG 0.128034 3_1:-83933988 None:intergenic
TTATCCTGGTCAAAGAAATT+TGG 0.160792 3_1:-83933148 None:intergenic
TTGGATTAAAATATATATTA+AGG 0.180387 3_1:+83933345 Msa0381710:three_prime_UTR
GGTGGTGCTTGTATTGAATT+AGG 0.198844 3_1:+83931886 Msa0381710:CDS
CAGTTTGCTTTCTTTGTTGC+TGG 0.209711 3_1:+83933254 Msa0381710:three_prime_UTR
TGTGATGTGATAATCGATTT+TGG 0.223359 3_1:-83931113 None:intergenic
TGTTGTTTGGTTCAAAATAA+AGG 0.233150 3_1:-83932791 None:intergenic
GAGAATTTGCAAGATGATTC+TGG 0.234265 3_1:+83932189 Msa0381710:CDS
CTCGTAATAGCTTTGTTGTT+TGG 0.240497 3_1:+83931387 Msa0381710:CDS
TGGTAGAAAATAATGATAAT+TGG 0.250597 3_1:+83932505 Msa0381710:CDS
AAATGGAGCAACTTAATTTA+AGG 0.257017 3_1:-83930994 None:intergenic
AAGTGGTAATGAGAGTAATT+TGG 0.259305 3_1:+83932374 Msa0381710:CDS
TTCAACAACATCAAAGGTTT+TGG 0.271463 3_1:-83931327 None:intergenic
AATGCTTTATCCATAAATTT+GGG 0.272774 3_1:+83933978 Msa0381710:three_prime_UTR
TCAGCCGATTCTGTTCCTTT+TGG 0.275927 3_1:+83933064 Msa0381710:three_prime_UTR
GAGACGGGTGAAGAGAAATT+TGG 0.277699 3_1:-83930946 None:intergenic
TGCAATCCTTCCATTGGTTT+TGG 0.278910 3_1:-83931278 None:intergenic
CCACTGATTCCATTGTTTCA+TGG 0.288131 3_1:+83931357 Msa0381710:CDS
TTGAGTGAATATTAGTGATT+TGG 0.288171 3_1:+83933534 Msa0381710:three_prime_UTR
TCGTAATAGCTTTGTTGTTT+GGG 0.292309 3_1:+83931388 Msa0381710:CDS
TCAATGCTTACAATTGAATA+TGG 0.303918 3_1:+83933432 Msa0381710:three_prime_UTR
CTTGTGTTGGTTCGAATCTC+TGG 0.307706 3_1:-83934089 None:intergenic
AACTCTTCATCTTCCTCTTC+GGG 0.307939 3_1:+83931242 Msa0381710:CDS
TCAATCATCTTGACAACTTT+GGG 0.309794 3_1:-83932924 None:intergenic
CCAATCACAACTTCATCTTC+TGG 0.312679 3_1:-83932447 None:intergenic
TGTATTGAATTAGGGGAGTA+TGG 0.320828 3_1:+83931895 Msa0381710:CDS
TAACTCTTCATCTTCCTCTT+CGG 0.322245 3_1:+83931241 Msa0381710:CDS
GGGATTAGATAGATAGATTA+GGG 0.322408 3_1:-83931024 None:intergenic
TCACTTGAGTTGCACCTTGC+TGG 0.323733 3_1:+83932613 Msa0381710:three_prime_UTR
TATTTAAACACCACACCATC+TGG 0.328747 3_1:-83933925 None:intergenic
TTCAATCATCTTGACAACTT+TGG 0.337501 3_1:-83932925 None:intergenic
TATGAAAGGTAGTTATGTTA+TGG 0.348109 3_1:-83931065 None:intergenic
GGATATGGTGTTCATGGAAT+TGG 0.357483 3_1:+83933301 Msa0381710:three_prime_UTR
CATTGTGAATTGAGTGTTGC+TGG 0.360684 3_1:+83933582 Msa0381710:three_prime_UTR
GCTCACTGCTAGTTCGAGTT+TGG 0.362423 3_1:+83932167 Msa0381710:CDS
TAATCTCGCGGAGGAGGATA+TGG 0.369052 3_1:+83933286 Msa0381710:three_prime_UTR
TTAGCATATGTCAGTGTTGT+TGG 0.370710 3_1:+83931206 Msa0381710:CDS
TGATGTGCCCGTGGAGGATT+TGG 0.372993 3_1:+83932485 Msa0381710:CDS
TGTTGGTGGAATGGTGGATT+TGG 0.375232 3_1:+83933473 Msa0381710:three_prime_UTR
GCAGAGCCTTGTTGATCAAA+TGG 0.381911 3_1:+83932539 Msa0381710:CDS
TGGGATTAGATAGATAGATT+AGG 0.385705 3_1:-83931025 None:intergenic
TGAATCAAGCAGTGAAGTTA+AGG 0.388539 3_1:+83932326 Msa0381710:CDS
AGAGAAATTTGGTTTGGTAA+TGG 0.389818 3_1:-83930935 None:intergenic
CTGATGGAGTGATGGTTGTC+AGG 0.392404 3_1:+83933686 Msa0381710:three_prime_UTR
GTTCACAACAATATGTTGTT+TGG 0.395706 3_1:-83932804 None:intergenic
AGTTGGCCTGTATCTTTATA+TGG 0.396126 3_1:+83933712 Msa0381710:three_prime_UTR
TGGTGTTTAAATAGACATAT+TGG 0.397087 3_1:+83933935 Msa0381710:three_prime_UTR
AATGGAAGGATTGCACGAAA+TGG 0.400329 3_1:+83931286 Msa0381710:CDS
AGTGGTAATGAGAGTAATTT+GGG 0.400460 3_1:+83932375 Msa0381710:CDS
GATGATTGAATGGGAAAAGT+TGG 0.400946 3_1:+83932938 Msa0381710:three_prime_UTR
CTCCTATTGTTCCTCGTGCT+TGG 0.402787 3_1:+83933803 Msa0381710:three_prime_UTR
TGGATTAAAATATATATTAA+GGG 0.408953 3_1:+83933346 Msa0381710:three_prime_UTR
AAGATGATTCTGGAGCTATA+AGG 0.413178 3_1:+83932199 Msa0381710:CDS
GTGGTGCTTGTATTGAATTA+GGG 0.418246 3_1:+83931887 Msa0381710:CDS
TGGCTGAGATTGTGAAGTTA+AGG 0.421096 3_1:+83931965 Msa0381710:CDS
TTCTACAACCAATTTGACTA+AGG 0.426171 3_1:-83932570 None:intergenic
TACAAACTATTCTAAAACTA+GGG 0.426336 3_1:-83934032 None:intergenic
TTACAAACTATTCTAAAACT+AGG 0.427025 3_1:-83934033 None:intergenic
CAGAGCCTTGTTGATCAAAT+GGG 0.427250 3_1:+83932540 Msa0381710:CDS
TAGATTAGGGAAGAGTGAAA+TGG 0.439868 3_1:-83931011 None:intergenic
TCTTGAGAGCATATATATGA+AGG 0.444253 3_1:+83933378 Msa0381710:three_prime_UTR
AGATGATTCTGGAGCTATAA+GGG 0.444673 3_1:+83932200 Msa0381710:CDS
GCATATATATGAAGGGTTGA+AGG 0.448803 3_1:+83933386 Msa0381710:three_prime_UTR
CTCTTGTAAACGGGGCCTGA+TGG 0.452618 3_1:+83933670 Msa0381710:three_prime_UTR
TTAGGGGAGTATGGTCTTGA+AGG 0.455498 3_1:+83931904 Msa0381710:CDS
AGCCAAGCACGAGGAACAAT+AGG 0.457798 3_1:-83933805 None:intergenic
ATGATTGAATGGGAAAAGTT+GGG 0.459488 3_1:+83932939 Msa0381710:three_prime_UTR
GAAGGGAATTAGAGTGAAAG+AGG 0.460183 3_1:+83931175 Msa0381710:CDS
GTGAGATTGAGAGGTTGAGA+AGG 0.465030 3_1:+83931926 Msa0381710:CDS
GATTCCCACCAACCAACTCT+TGG 0.469023 3_1:-83932425 None:intergenic
GGAGGAGGATATGGTGTTCA+TGG 0.471635 3_1:+83933295 Msa0381710:three_prime_UTR
CATTGTTCGCGGGTCAGTCT+AGG 0.473031 3_1:+83933204 Msa0381710:three_prime_UTR
ATGGAAGGATTGCACGAAAT+GGG 0.473051 3_1:+83931287 Msa0381710:CDS
GGTTCGAATCTCTGGTGTTA+CGG 0.475248 3_1:-83934081 None:intergenic
TAATCACCATATAAAGATAC+AGG 0.475577 3_1:-83933718 None:intergenic
CACGAGGAACAATAGGAGTA+TGG 0.476046 3_1:-83933798 None:intergenic
TGAATGGCTTTGTATGCAGC+AGG 0.477650 3_1:+83932731 Msa0381710:three_prime_UTR
CAAGCTATGCAGCAAGAGAC+TGG 0.480304 3_1:+83931865 Msa0381710:CDS
TAATCAACCACAGACTCAAT+TGG 0.480632 3_1:-83932228 None:intergenic
ATTCGTAATTCGTATCACTT+TGG 0.481209 3_1:+83933886 Msa0381710:three_prime_UTR
ATTTCGTGCAATCCTTCCAT+TGG 0.481224 3_1:-83931284 None:intergenic
GGGTGAAGAGAAATTTGGTT+TGG 0.483584 3_1:-83930941 None:intergenic
CATTAGGATAGAATAAGAAA+TGG 0.486421 3_1:-83932875 None:intergenic
GCGTTGAAATGAAGCGAAAA+CGG 0.487154 3_1:+83932142 Msa0381710:CDS
GGAAAGTTGGTAAGTATGAA+AGG 0.490210 3_1:-83931079 None:intergenic
AGCAACTTAATTTAAGGCGG+TGG 0.494578 3_1:-83930988 None:intergenic
TGAGATTGAGAGGTTGAGAA+GGG 0.495911 3_1:+83931927 Msa0381710:CDS
AAGGGAGCAATTATCTGCTA+TGG 0.496135 3_1:+83932005 Msa0381710:CDS
TGATGGTTGTCAGGTGGAGT+TGG 0.497598 3_1:+83933695 Msa0381710:three_prime_UTR
ATGATGTGTTGCTAGCAATT+CGG 0.498371 3_1:-83932989 None:intergenic
TTGTTCCTCGTGCTTGGCTG+TGG 0.498392 3_1:+83933809 Msa0381710:three_prime_UTR
GGCAGCAGCAGCATAATTCA+AGG 0.500409 3_1:+83931986 Msa0381710:CDS
CGATGGGAGTTTGCGAACGA+AGG 0.501252 3_1:+83931778 Msa0381710:CDS
AGCATCAACTAACTCAATGA+AGG 0.501749 3_1:+83931157 Msa0381710:exon
TACTTGCCATCTTGCCCAGA+TGG 0.503354 3_1:+83933910 Msa0381710:three_prime_UTR
TTGAGAGGTTGAGAAGGGAC+AGG 0.504469 3_1:+83931932 Msa0381710:CDS
CTAGCAACACATCATTCGTT+AGG 0.508340 3_1:+83932997 Msa0381710:three_prime_UTR
GGATCCAAATTTCTTTGACC+AGG 0.509136 3_1:+83933144 Msa0381710:three_prime_UTR
GTGTTCTGTACATTGTTCGC+GGG 0.509958 3_1:+83933194 Msa0381710:three_prime_UTR
TTCGCAAACTCCCATCGATC+CGG 0.510214 3_1:-83931772 None:intergenic
AAGTTGTCAAGATGATTGAA+TGG 0.521031 3_1:+83932928 Msa0381710:three_prime_UTR
CTGACAACCATCACTCCATC+AGG 0.521916 3_1:-83933685 None:intergenic
AATTATCTGCTATGGAAGCT+AGG 0.522811 3_1:+83932013 Msa0381710:CDS
CAGAGATGACAGTTCCCAAA+AGG 0.524119 3_1:-83933079 None:intergenic
CATATATATGAAGGGTTGAA+GGG 0.524858 3_1:+83933387 Msa0381710:three_prime_UTR
AGTTGTCAAGATGATTGAAT+GGG 0.528119 3_1:+83932929 Msa0381710:three_prime_UTR
TTTAAGGCGGTGGATAGAGT+AGG 0.530038 3_1:-83930978 None:intergenic
CCAGAAGATGAAGTTGTGAT+TGG 0.531597 3_1:+83932447 Msa0381710:CDS
ACCACACCATCTGGGCAAGA+TGG 0.532508 3_1:-83933916 None:intergenic
GACTACTATTGAGTCTGAGA+TGG 0.532873 3_1:+83932278 Msa0381710:CDS
CTTGAGAGCATATATATGAA+GGG 0.534563 3_1:+83933379 Msa0381710:three_prime_UTR
CTGAACCAAGAGTTGGTTGG+TGG 0.536158 3_1:+83932420 Msa0381710:CDS
AAAAGTTGATCCGGATCGAT+GGG 0.538609 3_1:+83931762 Msa0381710:CDS
CACTGGTGATTGTATATACG+TGG 0.538875 3_1:+83933752 Msa0381710:three_prime_UTR
AGTAGGAAGGTTCTAGAGAC+GGG 0.539491 3_1:-83930961 None:intergenic
GAAAAGTTGATCCGGATCGA+TGG 0.539674 3_1:+83931761 Msa0381710:CDS
GATGGGAGTTTGCGAACGAA+GGG 0.539714 3_1:+83931779 Msa0381710:CDS
AATAAAGGATACACATGTGA+TGG 0.541183 3_1:-83932776 None:intergenic
GTTCCCAAAAGGAACAGAAT+CGG 0.541652 3_1:-83933068 None:intergenic
GGATAGAATAAGAAATGGTA+TGG 0.543377 3_1:-83932870 None:intergenic
GGATTTACTGAACCAAGAGT+TGG 0.543897 3_1:+83932413 Msa0381710:CDS
CTAAAGATCAGAATTTATCC+TGG 0.545378 3_1:-83933162 None:intergenic
AGGGTCTCATTGTTATGTGT+TGG 0.546403 3_1:+83933640 Msa0381710:three_prime_UTR
TTTGGGTGATGCTGTGTGGG+AGG 0.547697 3_1:+83932392 Msa0381710:CDS
TGTGTTCTGTACATTGTTCG+CGG 0.551582 3_1:+83933193 Msa0381710:three_prime_UTR
ATATGGTGATTAACTTCAAG+AGG 0.551845 3_1:+83933729 Msa0381710:three_prime_UTR
TGATTAACTTCAAGAGGCAC+TGG 0.556625 3_1:+83933735 Msa0381710:three_prime_UTR
TAATTTGGGTGATGCTGTGT+GGG 0.557732 3_1:+83932389 Msa0381710:CDS
TGGATCTTCAACAACATCAA+AGG 0.559140 3_1:-83931333 None:intergenic
GAATTGTAAATCGAATAGCT+TGG 0.564977 3_1:+83933326 Msa0381710:three_prime_UTR
GAGTAGGAAGGTTCTAGAGA+CGG 0.570181 3_1:-83930962 None:intergenic
AAATTACTCTCATTACCACT+TGG 0.571022 3_1:-83932372 None:intergenic
AAATCTTACACCAAAACCAA+TGG 0.575232 3_1:+83931268 Msa0381710:CDS
GTCTTGAAGGTGAGATTGAG+AGG 0.580331 3_1:+83931917 Msa0381710:CDS
GCCATCTTGCCCAGATGGTG+TGG 0.581107 3_1:+83933915 Msa0381710:three_prime_UTR
GGAAGATTGTACTGCAGAAG+AGG 0.582683 3_1:+83932753 Msa0381710:three_prime_UTR
ATGCTTTATCCATAAATTTG+GGG 0.583932 3_1:+83933979 Msa0381710:three_prime_UTR
TGTGAATTGAGTGTTGCTGG+TGG 0.588769 3_1:+83933585 Msa0381710:three_prime_UTR
CTCTTGTCACGAGCAGCAAG+AGG 0.588881 3_1:+83932251 Msa0381710:CDS
CCATGAAACAATGGAATCAG+TGG 0.596228 3_1:-83931357 None:intergenic
TATGGATAAAGCATTGTCAA+CGG 0.599610 3_1:-83933970 None:intergenic
GAAACAATGGAATCAGTGGA+TGG 0.602123 3_1:-83931353 None:intergenic
ATTTAAACACCACACCATCT+GGG 0.605166 3_1:-83933924 None:intergenic
CAAAACCCATTTGATCAACA+AGG 0.605749 3_1:-83932545 None:intergenic
TAATTGATGTAGAATATGAA+TGG 0.607697 3_1:+83932715 Msa0381710:intron
GCATCAACTAACTCAATGAA+GGG 0.610881 3_1:+83931158 Msa0381710:exon
CTGGTGATTGTATATACGTG+GGG 0.612769 3_1:+83933754 Msa0381710:three_prime_UTR
TGGTGCTTGTATTGAATTAG+GGG 0.613155 3_1:+83931888 Msa0381710:CDS
TGAGAGGTTGAGAAGGGACA+GGG 0.615785 3_1:+83931933 Msa0381710:CDS
TGAACCAAGAGTTGGTTGGT+GGG 0.615910 3_1:+83932421 Msa0381710:CDS
GATTCCATTGTTTCATGGAG+CGG 0.618876 3_1:+83931362 Msa0381710:CDS
AAATAATGATAATTGGACTG+TGG 0.619002 3_1:+83932512 Msa0381710:CDS
AACCACAGACTCAATTGGCA+CGG 0.620284 3_1:-83932223 None:intergenic
TGTAAGATTTGAACCCGAAG+AGG 0.623342 3_1:-83931255 None:intergenic
GCAGCAGCAGCATAATTCAA+GGG 0.624420 3_1:+83931987 Msa0381710:CDS
GGCCGTGCCAATTGAGTCTG+TGG 0.628717 3_1:+83932221 Msa0381710:CDS
AACGGGGCCTGATGGAGTGA+TGG 0.628748 3_1:+83933678 Msa0381710:three_prime_UTR
TTCTCAAATTGATGTGCCCG+TGG 0.628790 3_1:+83932476 Msa0381710:CDS
CATCAGGCCCCGTTTACAAG+AGG 0.628875 3_1:-83933669 None:intergenic
ATGGAGTGATGGTTGTCAGG+TGG 0.629208 3_1:+83933689 Msa0381710:three_prime_UTR
GTAACGAGGTAAAATAGCAG+TGG 0.630092 3_1:-83931426 None:intergenic
AGCTCCGCTCCATGAAACAA+TGG 0.631104 3_1:-83931366 None:intergenic
CTTACACCAAAACCAATGGA+AGG 0.637289 3_1:+83931272 Msa0381710:CDS
TCAAATTGATGTGCCCGTGG+AGG 0.639975 3_1:+83932479 Msa0381710:CDS
TGGAGCAACTTAATTTAAGG+CGG 0.645189 3_1:-83930991 None:intergenic
TTACTGAACCAAGAGTTGGT+TGG 0.648299 3_1:+83932417 Msa0381710:CDS
TCTTGTCACGAGCAGCAAGA+GGG 0.651954 3_1:+83932252 Msa0381710:CDS
GCACAGAATAGAGAGTTGAA+AGG 0.656703 3_1:+83932120 Msa0381710:CDS
ACTGGTGATTGTATATACGT+GGG 0.658637 3_1:+83933753 Msa0381710:three_prime_UTR
TACTACAAATTACAAAACTG+AGG 0.659342 3_1:-83933618 None:intergenic
TGGTGATTGTATATACGTGG+GGG 0.663825 3_1:+83933755 Msa0381710:three_prime_UTR
AGGCGGTGGATAGAGTAGGA+AGG 0.671667 3_1:-83930974 None:intergenic
GTAATTTGGGTGATGCTGTG+TGG 0.674970 3_1:+83932388 Msa0381710:CDS
TAACAAAGTTCATACCAGCA+AGG 0.675115 3_1:-83932627 None:intergenic
AATAACCACAGCCAAGCACG+AGG 0.677918 3_1:-83933814 None:intergenic
TTGAAATGAAGCGAAAACGG+AGG 0.685238 3_1:+83932145 Msa0381710:CDS
GCATTGAGTTCAGTTCCAAG+TGG 0.687922 3_1:+83932357 Msa0381710:CDS
TTACTGTGTTTGAAGTAACG+AGG 0.690403 3_1:-83931440 None:intergenic
GAATGGCTTTGTATGCAGCA+GGG 0.693731 3_1:+83932732 Msa0381710:three_prime_UTR
GGTGATTGTATATACGTGGG+GGG 0.696287 3_1:+83933756 Msa0381710:three_prime_UTR
GCTATGCAGCAAGAGACTGG+TGG 0.743962 3_1:+83931868 Msa0381710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAGTTAAAAACATT+AGG - chr3_1:83932894-83932913 None:intergenic 10.0%
!! TTGGATTAAAATATATATTA+AGG + chr3_1:83933345-83933364 Msa0381710:three_prime_UTR 10.0%
!! TGGATTAAAATATATATTAA+GGG + chr3_1:83933346-83933365 Msa0381710:three_prime_UTR 10.0%
!!! TTTGTTATTGTTATTGTTAT+TGG + chr3_1:83932643-83932662 Msa0381710:intron 15.0%
!!! TTCAATTATTTTGATGTATC+CGG + chr3_1:83931647-83931666 Msa0381710:intron 20.0%
!!! TCAATCTTTTATACAACAAT+TGG + chr3_1:83932098-83932117 Msa0381710:CDS 20.0%
!! TGGTAGAAAATAATGATAAT+TGG + chr3_1:83932505-83932524 Msa0381710:CDS 20.0%
!! TTGATAAATAATTTCTGTGA+TGG + chr3_1:83932692-83932711 Msa0381710:intron 20.0%
!! TAATTGATGTAGAATATGAA+TGG + chr3_1:83932715-83932734 Msa0381710:intron 20.0%
!!! TGTTTTTAACTATATTTTGC+AGG + chr3_1:83932896-83932915 Msa0381710:three_prime_UTR 20.0%
!! AATGCTTTATCCATAAATTT+GGG + chr3_1:83933978-83933997 Msa0381710:three_prime_UTR 20.0%
!!! TACAAACTATTCTAAAACTA+GGG - chr3_1:83934035-83934054 None:intergenic 20.0%
!!! TTACAAACTATTCTAAAACT+AGG - chr3_1:83934036-83934055 None:intergenic 20.0%
! AAATGGAGCAACTTAATTTA+AGG - chr3_1:83930997-83931016 None:intergenic 25.0%
!!! GGTTTGTTTGTTTTAGTTTT+GGG - chr3_1:83931047-83931066 None:intergenic 25.0%
!!! TGGTTTGTTTGTTTTAGTTT+TGG - chr3_1:83931048-83931067 None:intergenic 25.0%
! TATGAAAGGTAGTTATGTTA+TGG - chr3_1:83931068-83931087 None:intergenic 25.0%
! AAGTGATAGTTAACTTACAT+AGG - chr3_1:83931495-83931514 None:intergenic 25.0%
! TTGAATGTAATCATATGTGT+CGG - chr3_1:83931632-83931651 None:intergenic 25.0%
!! AATTTTTGTGTTCATATGCA+GGG + chr3_1:83931733-83931752 Msa0381710:intron 25.0%
! AAATAATGATAATTGGACTG+TGG + chr3_1:83932512-83932531 Msa0381710:CDS 25.0%
!! TGTTGTTTGGTTCAAAATAA+AGG - chr3_1:83932794-83932813 None:intergenic 25.0%
! CATTAGGATAGAATAAGAAA+TGG - chr3_1:83932878-83932897 None:intergenic 25.0%
! TCAATGCTTACAATTGAATA+TGG + chr3_1:83933432-83933451 Msa0381710:three_prime_UTR 25.0%
! TTGAGTGAATATTAGTGATT+TGG + chr3_1:83933534-83933553 Msa0381710:three_prime_UTR 25.0%
! TACTACAAATTACAAAACTG+AGG - chr3_1:83933621-83933640 None:intergenic 25.0%
!!! TCAGTTTTGTAATTTGTAGT+AGG + chr3_1:83933620-83933639 Msa0381710:three_prime_UTR 25.0%
!!! CAGTTTTGTAATTTGTAGTA+GGG + chr3_1:83933621-83933640 Msa0381710:three_prime_UTR 25.0%
! TAATCACCATATAAAGATAC+AGG - chr3_1:83933721-83933740 None:intergenic 25.0%
! TGGTGTTTAAATAGACATAT+TGG + chr3_1:83933935-83933954 Msa0381710:three_prime_UTR 25.0%
! CAATGCTTTATCCATAAATT+TGG + chr3_1:83933977-83933996 Msa0381710:three_prime_UTR 25.0%
! ATGCTTTATCCATAAATTTG+GGG + chr3_1:83933979-83933998 Msa0381710:three_prime_UTR 25.0%
!! AGAGAAATTTGGTTTGGTAA+TGG - chr3_1:83930938-83930957 None:intergenic 30.0%
GGGATTAGATAGATAGATTA+GGG - chr3_1:83931027-83931046 None:intergenic 30.0%
TGGGATTAGATAGATAGATT+AGG - chr3_1:83931028-83931047 None:intergenic 30.0%
!!! TCGATTTTGGAGCTTAATTT+TGG - chr3_1:83931103-83931122 None:intergenic 30.0%
!! TGTGATGTGATAATCGATTT+TGG - chr3_1:83931116-83931135 None:intergenic 30.0%
AAATCTTACACCAAAACCAA+TGG + chr3_1:83931268-83931287 Msa0381710:CDS 30.0%
! TTCAACAACATCAAAGGTTT+TGG - chr3_1:83931330-83931349 None:intergenic 30.0%
!! TCGTAATAGCTTTGTTGTTT+GGG + chr3_1:83931388-83931407 Msa0381710:CDS 30.0%
AAGAACAAATTCACAAACAC+CGG - chr3_1:83931669-83931688 None:intergenic 30.0%
! GAATTTTTGTGTTCATATGC+AGG + chr3_1:83931732-83931751 Msa0381710:intron 30.0%
AAATTACTCTCATTACCACT+TGG - chr3_1:83932375-83932394 None:intergenic 30.0%
! AAGTGGTAATGAGAGTAATT+TGG + chr3_1:83932374-83932393 Msa0381710:CDS 30.0%
! AGTGGTAATGAGAGTAATTT+GGG + chr3_1:83932375-83932394 Msa0381710:CDS 30.0%
!! GTTTTGAACCTTAGTCAAAT+TGG + chr3_1:83932562-83932581 Msa0381710:exon 30.0%
TTCTACAACCAATTTGACTA+AGG - chr3_1:83932573-83932592 None:intergenic 30.0%
AATAAAGGATACACATGTGA+TGG - chr3_1:83932779-83932798 None:intergenic 30.0%
GTTCACAACAATATGTTGTT+TGG - chr3_1:83932807-83932826 None:intergenic 30.0%
GGATAGAATAAGAAATGGTA+TGG - chr3_1:83932873-83932892 None:intergenic 30.0%
TCAATCATCTTGACAACTTT+GGG - chr3_1:83932927-83932946 None:intergenic 30.0%
TTCAATCATCTTGACAACTT+TGG - chr3_1:83932928-83932947 None:intergenic 30.0%
AAGTTGTCAAGATGATTGAA+TGG + chr3_1:83932928-83932947 Msa0381710:three_prime_UTR 30.0%
AGTTGTCAAGATGATTGAAT+GGG + chr3_1:83932929-83932948 Msa0381710:three_prime_UTR 30.0%
ATGATTGAATGGGAAAAGTT+GGG + chr3_1:83932939-83932958 Msa0381710:three_prime_UTR 30.0%
TTATCCTGGTCAAAGAAATT+TGG - chr3_1:83933151-83933170 None:intergenic 30.0%
CTAAAGATCAGAATTTATCC+TGG - chr3_1:83933165-83933184 None:intergenic 30.0%
GAATTGTAAATCGAATAGCT+TGG + chr3_1:83933326-83933345 Msa0381710:three_prime_UTR 30.0%
! TCTTGAGAGCATATATATGA+AGG + chr3_1:83933378-83933397 Msa0381710:three_prime_UTR 30.0%
! CTTGAGAGCATATATATGAA+GGG + chr3_1:83933379-83933398 Msa0381710:three_prime_UTR 30.0%
CATATATATGAAGGGTTGAA+GGG + chr3_1:83933387-83933406 Msa0381710:three_prime_UTR 30.0%
ATATGGTGATTAACTTCAAG+AGG + chr3_1:83933729-83933748 Msa0381710:three_prime_UTR 30.0%
ATTCGTAATTCGTATCACTT+TGG + chr3_1:83933886-83933905 Msa0381710:three_prime_UTR 30.0%
!! TATGGATAAAGCATTGTCAA+CGG - chr3_1:83933973-83933992 None:intergenic 30.0%
TGGAGCAACTTAATTTAAGG+CGG - chr3_1:83930994-83931013 None:intergenic 35.0%
TAGATTAGGGAAGAGTGAAA+TGG - chr3_1:83931014-83931033 None:intergenic 35.0%
!! GGAAAGTTGGTAAGTATGAA+AGG - chr3_1:83931082-83931101 None:intergenic 35.0%
!! GGAGCTTAATTTTGGAAAGT+TGG - chr3_1:83931095-83931114 None:intergenic 35.0%
AGCATCAACTAACTCAATGA+AGG + chr3_1:83931157-83931176 Msa0381710:exon 35.0%
GCATCAACTAACTCAATGAA+GGG + chr3_1:83931158-83931177 Msa0381710:exon 35.0%
TTAGCATATGTCAGTGTTGT+TGG + chr3_1:83931206-83931225 Msa0381710:CDS 35.0%
TAACTCTTCATCTTCCTCTT+CGG + chr3_1:83931241-83931260 Msa0381710:CDS 35.0%
!! TCAAAGGTTTTGGTGAGAAA+TGG - chr3_1:83931320-83931339 None:intergenic 35.0%
TGGATCTTCAACAACATCAA+AGG - chr3_1:83931336-83931355 None:intergenic 35.0%
!! CTCGTAATAGCTTTGTTGTT+TGG + chr3_1:83931387-83931406 Msa0381710:CDS 35.0%
! TTACTGTGTTTGAAGTAACG+AGG - chr3_1:83931443-83931462 None:intergenic 35.0%
!!! GGGTTTTAGAAAAGTTGATC+CGG + chr3_1:83931753-83931772 Msa0381710:intron 35.0%
GTGGTGCTTGTATTGAATTA+GGG + chr3_1:83931887-83931906 Msa0381710:CDS 35.0%
TGGTGCTTGTATTGAATTAG+GGG + chr3_1:83931888-83931907 Msa0381710:CDS 35.0%
TGTATTGAATTAGGGGAGTA+TGG + chr3_1:83931895-83931914 Msa0381710:CDS 35.0%
AATTATCTGCTATGGAAGCT+AGG + chr3_1:83932013-83932032 Msa0381710:CDS 35.0%
GAGAATTTGCAAGATGATTC+TGG + chr3_1:83932189-83932208 Msa0381710:CDS 35.0%
!! AAGATGATTCTGGAGCTATA+AGG + chr3_1:83932199-83932218 Msa0381710:CDS 35.0%
!! AGATGATTCTGGAGCTATAA+GGG + chr3_1:83932200-83932219 Msa0381710:CDS 35.0%
TAATCAACCACAGACTCAAT+TGG - chr3_1:83932231-83932250 None:intergenic 35.0%
TGAATCAAGCAGTGAAGTTA+AGG + chr3_1:83932326-83932345 Msa0381710:CDS 35.0%
! ATTTTCTACCAAATCCTCCA+CGG - chr3_1:83932496-83932515 None:intergenic 35.0%
CAAAACCCATTTGATCAACA+AGG - chr3_1:83932548-83932567 None:intergenic 35.0%
TAACAAAGTTCATACCAGCA+AGG - chr3_1:83932630-83932649 None:intergenic 35.0%
GATGATTGAATGGGAAAAGT+TGG + chr3_1:83932938-83932957 Msa0381710:three_prime_UTR 35.0%
! ATGATGTGTTGCTAGCAATT+CGG - chr3_1:83932992-83933011 None:intergenic 35.0%
AAACTCAAAAAAACTGTCGC+AGG - chr3_1:83933045-83933064 None:intergenic 35.0%
! CTCTTTTAGACTTGTCAAAG+AGG + chr3_1:83933123-83933142 Msa0381710:three_prime_UTR 35.0%
!! TGGTTGTTTTGTTAATCTCG+CGG + chr3_1:83933274-83933293 Msa0381710:three_prime_UTR 35.0%
GCATATATATGAAGGGTTGA+AGG + chr3_1:83933386-83933405 Msa0381710:three_prime_UTR 35.0%
!!! GAACTGCAGCTTTATTTTTG+AGG + chr3_1:83933556-83933575 Msa0381710:three_prime_UTR 35.0%
! TGGTGTTTTCCTCTTGTAAA+CGG + chr3_1:83933660-83933679 Msa0381710:three_prime_UTR 35.0%
! AGTTGGCCTGTATCTTTATA+TGG + chr3_1:83933712-83933731 Msa0381710:three_prime_UTR 35.0%
ACTGGTGATTGTATATACGT+GGG + chr3_1:83933753-83933772 Msa0381710:three_prime_UTR 35.0%
ATTTAAACACCACACCATCT+GGG - chr3_1:83933927-83933946 None:intergenic 35.0%
TATTTAAACACCACACCATC+TGG - chr3_1:83933928-83933947 None:intergenic 35.0%
GGGTGAAGAGAAATTTGGTT+TGG - chr3_1:83930944-83930963 None:intergenic 40.0%
! AGCAACTTAATTTAAGGCGG+TGG - chr3_1:83930991-83931010 None:intergenic 40.0%
GAAGGGAATTAGAGTGAAAG+AGG + chr3_1:83931175-83931194 Msa0381710:CDS 40.0%
AACTCTTCATCTTCCTCTTC+GGG + chr3_1:83931242-83931261 Msa0381710:CDS 40.0%
TGTAAGATTTGAACCCGAAG+AGG - chr3_1:83931258-83931277 None:intergenic 40.0%
CTTACACCAAAACCAATGGA+AGG + chr3_1:83931272-83931291 Msa0381710:CDS 40.0%
!!! TGCAATCCTTCCATTGGTTT+TGG - chr3_1:83931281-83931300 None:intergenic 40.0%
ATTTCGTGCAATCCTTCCAT+TGG - chr3_1:83931287-83931306 None:intergenic 40.0%
AATGGAAGGATTGCACGAAA+TGG + chr3_1:83931286-83931305 Msa0381710:CDS 40.0%
ATGGAAGGATTGCACGAAAT+GGG + chr3_1:83931287-83931306 Msa0381710:CDS 40.0%
!! AAGGTTTTGGTGAGAAATGG+AGG - chr3_1:83931317-83931336 None:intergenic 40.0%
GAAACAATGGAATCAGTGGA+TGG - chr3_1:83931356-83931375 None:intergenic 40.0%
CCATGAAACAATGGAATCAG+TGG - chr3_1:83931360-83931379 None:intergenic 40.0%
!! CCACTGATTCCATTGTTTCA+TGG + chr3_1:83931357-83931376 Msa0381710:CDS 40.0%
GATTCCATTGTTTCATGGAG+CGG + chr3_1:83931362-83931381 Msa0381710:CDS 40.0%
GTAACGAGGTAAAATAGCAG+TGG - chr3_1:83931429-83931448 None:intergenic 40.0%
! AAAAGTTGATCCGGATCGAT+GGG + chr3_1:83931762-83931781 Msa0381710:CDS 40.0%
GGTGGTGCTTGTATTGAATT+AGG + chr3_1:83931886-83931905 Msa0381710:CDS 40.0%
TGAGATTGAGAGGTTGAGAA+GGG + chr3_1:83931927-83931946 Msa0381710:CDS 40.0%
TGGCTGAGATTGTGAAGTTA+AGG + chr3_1:83931965-83931984 Msa0381710:CDS 40.0%
AAGGGAGCAATTATCTGCTA+TGG + chr3_1:83932005-83932024 Msa0381710:CDS 40.0%
GCACAGAATAGAGAGTTGAA+AGG + chr3_1:83932120-83932139 Msa0381710:CDS 40.0%
GCGTTGAAATGAAGCGAAAA+CGG + chr3_1:83932142-83932161 Msa0381710:CDS 40.0%
TTGAAATGAAGCGAAAACGG+AGG + chr3_1:83932145-83932164 Msa0381710:CDS 40.0%
GACTACTATTGAGTCTGAGA+TGG + chr3_1:83932278-83932297 Msa0381710:CDS 40.0%
TAATTTGGGTGATGCTGTGT+GGG + chr3_1:83932389-83932408 Msa0381710:CDS 40.0%
GGATTTACTGAACCAAGAGT+TGG + chr3_1:83932413-83932432 Msa0381710:CDS 40.0%
! TTACTGAACCAAGAGTTGGT+TGG + chr3_1:83932417-83932436 Msa0381710:CDS 40.0%
CCAATCACAACTTCATCTTC+TGG - chr3_1:83932450-83932469 None:intergenic 40.0%
CCAGAAGATGAAGTTGTGAT+TGG + chr3_1:83932447-83932466 Msa0381710:CDS 40.0%
! TTTTCTACCAAATCCTCCAC+GGG - chr3_1:83932495-83932514 None:intergenic 40.0%
!! CAGAGCCTTGTTGATCAAAT+GGG + chr3_1:83932540-83932559 Msa0381710:CDS 40.0%
CTAGCAACACATCATTCGTT+AGG + chr3_1:83932997-83933016 Msa0381710:three_prime_UTR 40.0%
!! GGTATCTGGGTTTTGTCAAA+TGG - chr3_1:83933024-83933043 None:intergenic 40.0%
AAAAACTGTCGCAGGTATCT+GGG - chr3_1:83933037-83933056 None:intergenic 40.0%
AAAAAACTGTCGCAGGTATC+TGG - chr3_1:83933038-83933057 None:intergenic 40.0%
GTTCCCAAAAGGAACAGAAT+CGG - chr3_1:83933071-83933090 None:intergenic 40.0%
GGATCCAAATTTCTTTGACC+AGG + chr3_1:83933144-83933163 Msa0381710:three_prime_UTR 40.0%
TGTGTTCTGTACATTGTTCG+CGG + chr3_1:83933193-83933212 Msa0381710:three_prime_UTR 40.0%
! CAGTTTGCTTTCTTTGTTGC+TGG + chr3_1:83933254-83933273 Msa0381710:three_prime_UTR 40.0%
!! TTGTTTTGTTAATCTCGCGG+AGG + chr3_1:83933277-83933296 Msa0381710:three_prime_UTR 40.0%
GGATATGGTGTTCATGGAAT+TGG + chr3_1:83933301-83933320 Msa0381710:three_prime_UTR 40.0%
!!! CTGCTTTGTTGTTTTGCTGT+TGG + chr3_1:83933456-83933475 Msa0381710:three_prime_UTR 40.0%
!!! CTTTGTTGTTTTGCTGTTGG+TGG + chr3_1:83933459-83933478 Msa0381710:three_prime_UTR 40.0%
!!! TTGTTTTGCTGTTGGTGGAA+TGG + chr3_1:83933464-83933483 Msa0381710:three_prime_UTR 40.0%
!!! CTGCAGCTTTATTTTTGAGG+TGG + chr3_1:83933559-83933578 Msa0381710:three_prime_UTR 40.0%
! CATTGTGAATTGAGTGTTGC+TGG + chr3_1:83933582-83933601 Msa0381710:three_prime_UTR 40.0%
AGGGTCTCATTGTTATGTGT+TGG + chr3_1:83933640-83933659 Msa0381710:three_prime_UTR 40.0%
! GGTGTTTTCCTCTTGTAAAC+GGG + chr3_1:83933661-83933680 Msa0381710:three_prime_UTR 40.0%
! GTGTTTTCCTCTTGTAAACG+GGG + chr3_1:83933662-83933681 Msa0381710:three_prime_UTR 40.0%
! TGATTAACTTCAAGAGGCAC+TGG + chr3_1:83933735-83933754 Msa0381710:three_prime_UTR 40.0%
CACTGGTGATTGTATATACG+TGG + chr3_1:83933752-83933771 Msa0381710:three_prime_UTR 40.0%
CTGGTGATTGTATATACGTG+GGG + chr3_1:83933754-83933773 Msa0381710:three_prime_UTR 40.0%
TGGTGATTGTATATACGTGG+GGG + chr3_1:83933755-83933774 Msa0381710:three_prime_UTR 40.0%
GAATCAACGCCCCAAATTTA+TGG - chr3_1:83933991-83934010 None:intergenic 40.0%
GAGACGGGTGAAGAGAAATT+TGG - chr3_1:83930949-83930968 None:intergenic 45.0%
!! AGTAGGAAGGTTCTAGAGAC+GGG - chr3_1:83930964-83930983 None:intergenic 45.0%
!! GAGTAGGAAGGTTCTAGAGA+CGG - chr3_1:83930965-83930984 None:intergenic 45.0%
! TTTAAGGCGGTGGATAGAGT+AGG - chr3_1:83930981-83931000 None:intergenic 45.0%
!! GTTTTGGTGAGAAATGGAGG+TGG - chr3_1:83931314-83931333 None:intergenic 45.0%
! GAAAAGTTGATCCGGATCGA+TGG + chr3_1:83931761-83931780 Msa0381710:CDS 45.0%
!!! CGAACGAAGGGTTTTTAGCT+GGG + chr3_1:83931791-83931810 Msa0381710:CDS 45.0%
! TTAGGGGAGTATGGTCTTGA+AGG + chr3_1:83931904-83931923 Msa0381710:CDS 45.0%
GTCTTGAAGGTGAGATTGAG+AGG + chr3_1:83931917-83931936 Msa0381710:CDS 45.0%
GTGAGATTGAGAGGTTGAGA+AGG + chr3_1:83931926-83931945 Msa0381710:CDS 45.0%
!! AAGGGACAGGGCTGTTTTAA+TGG + chr3_1:83931945-83931964 Msa0381710:CDS 45.0%
GCAGCAGCAGCATAATTCAA+GGG + chr3_1:83931987-83932006 Msa0381710:CDS 45.0%
AACCACAGACTCAATTGGCA+CGG - chr3_1:83932226-83932245 None:intergenic 45.0%
GCATTGAGTTCAGTTCCAAG+TGG + chr3_1:83932357-83932376 Msa0381710:CDS 45.0%
GTAATTTGGGTGATGCTGTG+TGG + chr3_1:83932388-83932407 Msa0381710:CDS 45.0%
! TGAACCAAGAGTTGGTTGGT+GGG + chr3_1:83932421-83932440 Msa0381710:CDS 45.0%
TTCTCAAATTGATGTGCCCG+TGG + chr3_1:83932476-83932495 Msa0381710:CDS 45.0%
!! GCAGAGCCTTGTTGATCAAA+TGG + chr3_1:83932539-83932558 Msa0381710:CDS 45.0%
!! TGAATGGCTTTGTATGCAGC+AGG + chr3_1:83932731-83932750 Msa0381710:three_prime_UTR 45.0%
!! GAATGGCTTTGTATGCAGCA+GGG + chr3_1:83932732-83932751 Msa0381710:three_prime_UTR 45.0%
GGAAGATTGTACTGCAGAAG+AGG + chr3_1:83932753-83932772 Msa0381710:three_prime_UTR 45.0%
!! TCAGCCGATTCTGTTCCTTT+TGG + chr3_1:83933064-83933083 Msa0381710:three_prime_UTR 45.0%
!! CAGCCGATTCTGTTCCTTTT+GGG + chr3_1:83933065-83933084 Msa0381710:three_prime_UTR 45.0%
CAGAGATGACAGTTCCCAAA+AGG - chr3_1:83933082-83933101 None:intergenic 45.0%
!! CTTTTGGGAACTGTCATCTC+TGG + chr3_1:83933080-83933099 Msa0381710:three_prime_UTR 45.0%
GTGTTCTGTACATTGTTCGC+GGG + chr3_1:83933194-83933213 Msa0381710:three_prime_UTR 45.0%
! TTTTGTTAATCTCGCGGAGG+AGG + chr3_1:83933280-83933299 Msa0381710:three_prime_UTR 45.0%
!!! TTTTGCTGTTGGTGGAATGG+TGG + chr3_1:83933467-83933486 Msa0381710:three_prime_UTR 45.0%
!! TGTTGGTGGAATGGTGGATT+TGG + chr3_1:83933473-83933492 Msa0381710:three_prime_UTR 45.0%
! TGTGAATTGAGTGTTGCTGG+TGG + chr3_1:83933585-83933604 Msa0381710:three_prime_UTR 45.0%
GGTGATTGTATATACGTGGG+GGG + chr3_1:83933756-83933775 Msa0381710:three_prime_UTR 45.0%
CACGAGGAACAATAGGAGTA+TGG - chr3_1:83933801-83933820 None:intergenic 45.0%
!! GAAAAAAAAAAAAAAAAAAA+AGG - chr3_1:83933844-83933863 None:intergenic 5.0%
AGCTCCGCTCCATGAAACAA+TGG - chr3_1:83931369-83931388 None:intergenic 50.0%
TTCGCAAACTCCCATCGATC+CGG - chr3_1:83931775-83931794 None:intergenic 50.0%
GATGGGAGTTTGCGAACGAA+GGG + chr3_1:83931779-83931798 Msa0381710:CDS 50.0%
!!! GCGAACGAAGGGTTTTTAGC+TGG + chr3_1:83931790-83931809 Msa0381710:CDS 50.0%
!!! AAGGGTTTTTAGCTGGGCAG+AGG + chr3_1:83931797-83931816 Msa0381710:CDS 50.0%
CAAGCTATGCAGCAAGAGAC+TGG + chr3_1:83931865-83931884 Msa0381710:CDS 50.0%
TTGAGAGGTTGAGAAGGGAC+AGG + chr3_1:83931932-83931951 Msa0381710:CDS 50.0%
TGAGAGGTTGAGAAGGGACA+GGG + chr3_1:83931933-83931952 Msa0381710:CDS 50.0%
GGCAGCAGCAGCATAATTCA+AGG + chr3_1:83931986-83932005 Msa0381710:CDS 50.0%
! GCTCACTGCTAGTTCGAGTT+TGG + chr3_1:83932167-83932186 Msa0381710:CDS 50.0%
TCTTGTCACGAGCAGCAAGA+GGG + chr3_1:83932252-83932271 Msa0381710:CDS 50.0%
! CTGAACCAAGAGTTGGTTGG+TGG + chr3_1:83932420-83932439 Msa0381710:CDS 50.0%
GATTCCCACCAACCAACTCT+TGG - chr3_1:83932428-83932447 None:intergenic 50.0%
TCAAATTGATGTGCCCGTGG+AGG + chr3_1:83932479-83932498 Msa0381710:CDS 50.0%
! TCACTTGAGTTGCACCTTGC+TGG + chr3_1:83932613-83932632 Msa0381710:three_prime_UTR 50.0%
TAATCTCGCGGAGGAGGATA+TGG + chr3_1:83933286-83933305 Msa0381710:three_prime_UTR 50.0%
GGAGGAGGATATGGTGTTCA+TGG + chr3_1:83933295-83933314 Msa0381710:three_prime_UTR 50.0%
CTGACAACCATCACTCCATC+AGG - chr3_1:83933688-83933707 None:intergenic 50.0%
CTGATGGAGTGATGGTTGTC+AGG + chr3_1:83933686-83933705 Msa0381710:three_prime_UTR 50.0%
ATGGAGTGATGGTTGTCAGG+TGG + chr3_1:83933689-83933708 Msa0381710:three_prime_UTR 50.0%
TGATGGTTGTCAGGTGGAGT+TGG + chr3_1:83933695-83933714 Msa0381710:three_prime_UTR 50.0%
CTCCTATTGTTCCTCGTGCT+TGG + chr3_1:83933803-83933822 Msa0381710:three_prime_UTR 50.0%
AGCCAAGCACGAGGAACAAT+AGG - chr3_1:83933808-83933827 None:intergenic 50.0%
AATAACCACAGCCAAGCACG+AGG - chr3_1:83933817-83933836 None:intergenic 50.0%
TACTTGCCATCTTGCCCAGA+TGG + chr3_1:83933910-83933929 Msa0381710:three_prime_UTR 50.0%
AGGCGGTGGATAGAGTAGGA+AGG - chr3_1:83930977-83930996 None:intergenic 55.0%
CGATGGGAGTTTGCGAACGA+AGG + chr3_1:83931778-83931797 Msa0381710:CDS 55.0%
GCTATGCAGCAAGAGACTGG+TGG + chr3_1:83931868-83931887 Msa0381710:CDS 55.0%
CTCTTGTCACGAGCAGCAAG+AGG + chr3_1:83932251-83932270 Msa0381710:CDS 55.0%
TTTGGGTGATGCTGTGTGGG+AGG + chr3_1:83932392-83932411 Msa0381710:CDS 55.0%
TGATGTGCCCGTGGAGGATT+TGG + chr3_1:83932485-83932504 Msa0381710:CDS 55.0%
CATTGTTCGCGGGTCAGTCT+AGG + chr3_1:83933204-83933223 Msa0381710:three_prime_UTR 55.0%
CATCAGGCCCCGTTTACAAG+AGG - chr3_1:83933672-83933691 None:intergenic 55.0%
CTCTTGTAAACGGGGCCTGA+TGG + chr3_1:83933670-83933689 Msa0381710:three_prime_UTR 55.0%
TTGTTCCTCGTGCTTGGCTG+TGG + chr3_1:83933809-83933828 Msa0381710:three_prime_UTR 55.0%
ACCACACCATCTGGGCAAGA+TGG - chr3_1:83933919-83933938 None:intergenic 55.0%
GGCCGTGCCAATTGAGTCTG+TGG + chr3_1:83932221-83932240 Msa0381710:CDS 60.0%
AACGGGGCCTGATGGAGTGA+TGG + chr3_1:83933678-83933697 Msa0381710:three_prime_UTR 60.0%
GCCATCTTGCCCAGATGGTG+TGG + chr3_1:83933915-83933934 Msa0381710:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 83930925 83934102 83930925 ID=Msa0381710;Name=Msa0381710
chr3_1 mRNA 83930925 83934102 83930925 ID=Msa0381710-mRNA-1;Parent=Msa0381710;Name=Msa0381710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=248|1|1|1|0.5|0.33|3|1435|381
chr3_1 exon 83930925 83931496 83930925 ID=Msa0381710-mRNA-1:exon:21733;Parent=Msa0381710-mRNA-1
chr3_1 exon 83931754 83932634 83931754 ID=Msa0381710-mRNA-1:exon:21734;Parent=Msa0381710-mRNA-1
chr3_1 exon 83932727 83934102 83932727 ID=Msa0381710-mRNA-1:exon:21735;Parent=Msa0381710-mRNA-1
chr3_1 five_prime_UTR 83930925 83931172 83930925 ID=Msa0381710-mRNA-1:five_prime_utr;Parent=Msa0381710-mRNA-1
chr3_1 CDS 83931173 83931496 83931173 ID=Msa0381710-mRNA-1:cds;Parent=Msa0381710-mRNA-1
chr3_1 CDS 83931754 83932575 83931754 ID=Msa0381710-mRNA-1:cds;Parent=Msa0381710-mRNA-1
chr3_1 three_prime_UTR 83932576 83932634 83932576 ID=Msa0381710-mRNA-1:three_prime_utr;Parent=Msa0381710-mRNA-1
chr3_1 three_prime_UTR 83932727 83934102 83932727 ID=Msa0381710-mRNA-1:three_prime_utr;Parent=Msa0381710-mRNA-1
Gene Sequence

>Msa0381710

ATGAAGGGAATTAGAGTGAAAGAGGAAGAAACATTAGCATATGTCAGTGTTGTTGGTTCAACATCATGTAACTCTTCATCTTCCTCTTCGGGTTCAAATCTTACACCAAAACCAATGGAAGGATTGCACGAAATGGGTCCACCTCCATTTCTCACCAAAACCTTTGATGTTGTTGAAGATCCATCCACTGATTCCATTGTTTCATGGAGCGGAGCTCGTAATAGCTTTGTTGTTTGGGATCTTCACAAATTCTCCACTGCTATTTTACCTCGTTACTTCAAACACAGTAATTTCTCTAGCTTCGTTCGACAACTCAATACCTATGGTTTTAGAAAAGTTGATCCGGATCGATGGGAGTTTGCGAACGAAGGGTTTTTAGCTGGGCAGAGGAACTTGTTGAAAACAATCAAGAGAAGAAGAAATGTGACACAATCACAAGCTATGCAGCAAGAGACTGGTGGTGCTTGTATTGAATTAGGGGAGTATGGTCTTGAAGGTGAGATTGAGAGGTTGAGAAGGGACAGGGCTGTTTTAATGGCTGAGATTGTGAAGTTAAGGCAGCAGCAGCATAATTCAAGGGAGCAATTATCTGCTATGGAAGCTAGGTTGTTGATTACTGAGAAGAAACATCAACAGATGATGAATTTTCTTGCAAAAGCACTTAGCAATCAATCTTTTATACAACAATTGGCACAGAATAGAGAGTTGAAAGGCGTTGAAATGAAGCGAAAACGGAGGCTCACTGCTAGTTCGAGTTTGGAGAATTTGCAAGATGATTCTGGAGCTATAAGGGCCGTGCCAATTGAGTCTGTGGTTGATTACTCTTGTCACGAGCAGCAAGAGGGTTTGACTACTATTGAGTCTGAGATGGAGACACTGTTAAGTGCTTATGATAATGAATCAAGCAGTGAAGTTAAGGACTACAGTGCATTGAGTTCAGTTCCAAGTGGTAATGAGAGTAATTTGGGTGATGCTGTGTGGGAGGATTTACTGAACCAAGAGTTGGTTGGTGGGAATCCAGAAGATGAAGTTGTGATTGGTGATTTTTCTCAAATTGATGTGCCCGTGGAGGATTTGGTAGAAAATAATGATAATTGGACTGTGGATTTGCAGAGCCTTGTTGATCAAATGGGTTTTGAACCTTAG
Protein sequence

>Msa0381710

MKGIRVKEEETLAYVSVVGSTSCNSSSSSSGSNLTPKPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNVTQSQAMQQETGGACIELGEYGLEGEIERLRRDRAVLMAEIVKLRQQQHNSREQLSAMEARLLITEKKHQQMMNFLAKALSNQSFIQQLAQNRELKGVEMKRKRRLTASSSLENLQDDSGAIRAVPIESVVDYSCHEQQEGLTTIESEMETLLSAYDNESSSEVKDYSALSSVPSGNESNLGDAVWEDLLNQELVGGNPEDEVVIGDFSQIDVPVEDLVENNDNWTVDLQSLVDQMGFEP*