AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0431180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431180 MtrunA17_Chr3g0135831 96.063 381 12 1 1 381 1 378 0.0 753
Msa0431180 MtrunA17_Chr7g0260331 54.924 264 112 2 8 264 8 271 6.12e-94 285
Msa0431180 MtrunA17_Chr1g0204741 62.963 216 73 4 36 246 27 240 9.73e-92 278
Msa0431180 MtrunA17_Chr5g0410881 55.357 224 84 4 36 247 21 240 1.99e-80 255
Msa0431180 MtrunA17_Chr4g0071051 40.431 371 177 11 24 376 76 420 6.44e-77 243
Msa0431180 MtrunA17_Chr4g0039891 54.808 208 86 2 48 247 11 218 3.23e-73 236
Msa0431180 MtrunA17_Chr1g0185131 44.224 303 143 8 36 331 19 302 3.68e-73 231
Msa0431180 MtrunA17_Chr6g0485571 45.274 201 106 2 49 249 11 207 6.18e-53 179
Msa0431180 MtrunA17_Chr8g0379701 40.517 232 130 2 48 275 11 238 4.90e-49 170
Msa0431180 MtrunA17_Chr8g0392001 45.876 194 98 2 49 235 22 215 5.43e-49 169
Msa0431180 MtrunA17_Chr8g0378061 43.284 201 104 5 50 247 23 216 5.54e-46 164
Msa0431180 MtrunA17_Chr2g0330821 40.933 193 110 1 43 235 73 261 5.71e-46 161
Msa0431180 MtrunA17_Chr6g0467041 42.365 203 107 5 49 248 22 217 6.72e-46 160
Msa0431180 MtrunA17_Chr2g0284481 41.243 177 101 1 48 221 14 190 2.00e-43 155
Msa0431180 MtrunA17_Chr5g0397881 62.766 94 35 0 47 140 22 115 5.56e-38 140
Msa0431180 MtrunA17_Chr7g0257331 45.062 162 76 3 40 188 9 170 1.76e-37 135
Msa0431180 MtrunA17_Chr3g0134031 56.757 111 43 1 43 153 18 123 8.26e-37 137
Msa0431180 MtrunA17_Chr5g0402291 55.882 102 45 0 46 147 6 107 8.93e-37 135
Msa0431180 MtrunA17_Chr6g0472421 58.511 94 39 0 47 140 31 124 9.08e-35 130
Msa0431180 MtrunA17_Chr1g0203601 54.206 107 49 0 47 153 16 122 1.28e-34 129
Msa0431180 MtrunA17_Chr1g0179311 38.537 205 120 4 109 310 14 215 4.45e-34 129
Msa0431180 MtrunA17_Chr8g0375041 52.727 110 50 1 44 153 4 111 5.25e-34 126
Msa0431180 MtrunA17_Chr5g0441531 60.638 94 37 0 47 140 23 116 6.83e-34 126
Msa0431180 MtrunA17_Chr4g0047421 36.957 184 101 5 28 204 17 192 4.78e-29 112
Msa0431180 MtrunA17_Chr1g0179321 63.514 74 27 0 35 108 35 108 3.02e-26 101
Msa0431180 MtrunA17_Chr4g0023771 51.429 70 33 1 40 108 6 75 6.52e-18 79.0
Msa0431180 MtrunA17_Chr2g0330841 32.051 156 97 4 96 247 26 176 1.71e-16 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0431180 AT2G26150.1 51.862 349 124 7 36 379 31 340 2.57e-121 355
Msa0431180 AT2G26150.4 51.862 349 124 7 36 379 31 340 2.57e-121 355
Msa0431180 AT3G22830.1 44.258 357 158 8 36 359 48 396 5.94e-89 274
Msa0431180 AT3G51910.1 55.357 224 79 3 39 256 19 227 7.04e-77 239
Msa0431180 AT4G17750.1 51.570 223 91 2 47 252 50 272 3.11e-76 244
Msa0431180 AT1G32330.1 44.816 299 146 7 15 298 3 297 2.56e-75 241
Msa0431180 AT1G32330.2 44.816 299 146 7 15 298 3 297 3.19e-75 241
Msa0431180 AT5G16820.1 50.655 229 97 3 27 244 10 233 1.37e-74 239
Msa0431180 AT5G16820.2 50.655 229 97 3 27 244 10 233 1.37e-74 239
Msa0431180 AT3G02990.1 53.589 209 86 3 48 247 22 228 2.05e-73 236
Msa0431180 AT3G63350.1 43.492 315 118 7 25 331 4 266 1.80e-70 223
Msa0431180 AT5G43840.1 47.863 234 105 3 36 269 6 222 2.60e-69 219
Msa0431180 AT2G26150.3 44.404 277 108 8 109 379 49 285 5.76e-68 216
Msa0431180 AT2G26150.2 44.404 277 108 8 109 379 49 285 5.76e-68 216
Msa0431180 AT5G03720.2 45.815 227 111 4 17 240 24 241 1.09e-60 201
Msa0431180 AT5G03720.1 45.815 227 111 4 17 240 24 241 1.09e-60 201
Msa0431180 AT1G67970.1 47.872 188 97 1 49 235 19 206 5.74e-56 188
Msa0431180 AT5G54070.1 42.857 217 109 3 42 257 63 265 1.45e-55 186
Msa0431180 AT4G13980.1 40.201 199 114 2 50 247 24 218 3.98e-48 170
Msa0431180 AT3G24520.1 45.411 207 86 5 49 251 17 200 1.56e-47 165
Msa0431180 AT5G45710.3 38.725 204 118 2 48 251 12 208 2.92e-37 138
Msa0431180 AT5G45710.1 38.725 204 118 2 48 251 12 208 2.92e-37 138
Msa0431180 AT4G36990.1 52.632 114 48 1 47 160 12 119 1.53e-36 134
Msa0431180 AT1G46264.1 38.191 199 70 3 39 187 24 219 2.83e-36 135
Msa0431180 AT2G41690.1 48.889 135 52 2 6 140 14 131 5.48e-36 132
Msa0431180 AT4G18880.1 44.000 175 97 1 48 221 14 188 1.19e-35 135
Msa0431180 AT5G62020.1 55.882 102 45 0 47 148 21 122 1.79e-35 132
Msa0431180 AT4G11660.1 58.511 94 39 0 47 140 57 150 2.10e-34 131
Msa0431180 AT4G18870.1 34.711 121 75 1 49 165 146 266 1.31e-20 91.3
Msa0431180 AT4G18870.1 43.678 87 48 1 50 136 14 99 6.88e-18 83.6
Msa0431180 AT1G77570.1 36.667 90 54 2 50 136 27 116 6.34e-13 66.2

Find 182 sgRNAs with CRISPR-Local

Find 229 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCTTTATCCATAAATT+TGG 0.091146 3_2:+83207758 Msa0431180:three_prime_UTR
GAATCAACGCCCCAAATTTA+TGG 0.128034 3_2:-83207769 None:intergenic
TTATCCTGGTCAAAGAAATT+TGG 0.160792 3_2:-83206931 None:intergenic
TTGGATTAAAATATATATTA+AGG 0.180387 3_2:+83207128 Msa0431180:three_prime_UTR
GGTGGTGCTTGTATTGAATT+AGG 0.198844 3_2:+83205669 Msa0431180:CDS
CAGTTTGCTTTCTTTGTTGC+TGG 0.209711 3_2:+83207037 Msa0431180:three_prime_UTR
TGTGATGTGATAATCGATTT+TGG 0.223359 3_2:-83204870 None:intergenic
TGTTGTTTGGTTCAAAATAA+AGG 0.233150 3_2:-83206574 None:intergenic
GAGAATTTGCAAGATGATTC+TGG 0.234265 3_2:+83205972 Msa0431180:CDS
CTCGTAATAGCTTTGTTGTT+TGG 0.240497 3_2:+83205144 Msa0431180:CDS
TGGTAGAAAATAATGATAAT+TGG 0.250597 3_2:+83206288 Msa0431180:CDS
AAATGGAGCAACTTAATTTA+AGG 0.257017 3_2:-83204752 None:intergenic
AAGTGGTAATGAGAGTAATT+TGG 0.259305 3_2:+83206157 Msa0431180:CDS
TTCAACAACATCAAAGGTTT+TGG 0.271463 3_2:-83205084 None:intergenic
AATGCTTTATCCATAAATTT+GGG 0.272774 3_2:+83207759 Msa0431180:three_prime_UTR
TCAGCCGATTCTGTTCCTTT+TGG 0.275927 3_2:+83206847 Msa0431180:three_prime_UTR
GAGACGGGTGAAGAGAAATT+TGG 0.277699 3_2:-83204704 None:intergenic
TGCAATCCTTCCATTGGTTT+TGG 0.278910 3_2:-83205035 None:intergenic
CCACTGATTCCATTGTTTCA+TGG 0.288131 3_2:+83205114 Msa0431180:CDS
TTGAGTGAATATTAGTGATT+TGG 0.288171 3_2:+83207317 Msa0431180:three_prime_UTR
TCGTAATAGCTTTGTTGTTT+GGG 0.292309 3_2:+83205145 Msa0431180:CDS
TCAATGCTTACAATTGAATA+TGG 0.303918 3_2:+83207215 Msa0431180:three_prime_UTR
CTTGTGTTGGTTCGAATCTC+TGG 0.307706 3_2:-83207870 None:intergenic
AACTCTTCATCTTCCTCTTC+GGG 0.307939 3_2:+83204999 Msa0431180:CDS
TCAATCATCTTGACAACTTT+GGG 0.309794 3_2:-83206707 None:intergenic
CCAATCACAACTTCATCTTC+TGG 0.312679 3_2:-83206230 None:intergenic
TGTATTGAATTAGGGGAGTA+TGG 0.320828 3_2:+83205678 Msa0431180:CDS
TAACTCTTCATCTTCCTCTT+CGG 0.322245 3_2:+83204998 Msa0431180:CDS
TCACTTGAGTTGCACCTTGC+TGG 0.323733 3_2:+83206396 Msa0431180:three_prime_UTR
TATTTAAACACCACACCATC+TGG 0.328747 3_2:-83207706 None:intergenic
TTGGGATTAGATAGATAGAT+TGG 0.336724 3_2:-83204783 None:intergenic
TTCAATCATCTTGACAACTT+TGG 0.337501 3_2:-83206708 None:intergenic
TATGAAAGGTAGTTATGTTA+TGG 0.348109 3_2:-83204822 None:intergenic
GGATATGGTGTTCATGGAAT+TGG 0.357483 3_2:+83207084 Msa0431180:three_prime_UTR
CATTGTGAATTGAGTGTTGC+TGG 0.360684 3_2:+83207365 Msa0431180:three_prime_UTR
GCTCACTGCTAGTTCGAGTT+TGG 0.362423 3_2:+83205950 Msa0431180:CDS
TAATCTCGCGGAGGAGGATA+TGG 0.369052 3_2:+83207069 Msa0431180:three_prime_UTR
TTAGCATATGTCAGTGTTGT+TGG 0.370710 3_2:+83204963 Msa0431180:CDS
TGATGTGCCCGTGGAGGATT+TGG 0.372993 3_2:+83206268 Msa0431180:CDS
TGTTGGTGGAATGGTGGATT+TGG 0.375232 3_2:+83207256 Msa0431180:three_prime_UTR
GCAGAGCCTTGTTGATCAAA+TGG 0.381911 3_2:+83206322 Msa0431180:CDS
TGAATCAAGCAGTGAAGTTA+AGG 0.388539 3_2:+83206109 Msa0431180:CDS
AGAGAAATTTGGTTTGGTAA+TGG 0.389818 3_2:-83204693 None:intergenic
CTGATGGAGTGATGGTTGTC+AGG 0.392404 3_2:+83207469 Msa0431180:three_prime_UTR
GTTCACAACAATATGTTGTT+TGG 0.395706 3_2:-83206587 None:intergenic
AGTTGGCCTGTATCTTTATA+TGG 0.396126 3_2:+83207495 Msa0431180:three_prime_UTR
TGGTGTTTAAATAGACATAT+TGG 0.397087 3_2:+83207716 Msa0431180:three_prime_UTR
AATGGAAGGATTGCACGAAA+TGG 0.400329 3_2:+83205043 Msa0431180:CDS
AGTGGTAATGAGAGTAATTT+GGG 0.400460 3_2:+83206158 Msa0431180:CDS
GATGATTGAATGGGAAAAGT+TGG 0.400946 3_2:+83206721 Msa0431180:three_prime_UTR
CTCCTATTGTTCCTCGTGCT+TGG 0.402787 3_2:+83207586 Msa0431180:three_prime_UTR
TGGATTAAAATATATATTAA+GGG 0.408953 3_2:+83207129 Msa0431180:three_prime_UTR
AAGATGATTCTGGAGCTATA+AGG 0.413178 3_2:+83205982 Msa0431180:CDS
GTGGTGCTTGTATTGAATTA+GGG 0.418246 3_2:+83205670 Msa0431180:CDS
TGGCTGAGATTGTGAAGTTA+AGG 0.421096 3_2:+83205748 Msa0431180:CDS
TTCTACAACCAATTTGACTA+AGG 0.426171 3_2:-83206353 None:intergenic
TACAAACTATTCTAAAACTA+GGG 0.426336 3_2:-83207813 None:intergenic
TTACAAACTATTCTAAAACT+AGG 0.427025 3_2:-83207814 None:intergenic
CAGAGCCTTGTTGATCAAAT+GGG 0.427250 3_2:+83206323 Msa0431180:CDS
TCTTGAGAGCATATATATGA+AGG 0.444253 3_2:+83207161 Msa0431180:three_prime_UTR
AGATGATTCTGGAGCTATAA+GGG 0.444673 3_2:+83205983 Msa0431180:CDS
GCATATATATGAAGGGTTGA+AGG 0.448803 3_2:+83207169 Msa0431180:three_prime_UTR
CTCTTGTAAACGGGGCCTGA+TGG 0.452618 3_2:+83207453 Msa0431180:three_prime_UTR
TTAGGGGAGTATGGTCTTGA+AGG 0.455498 3_2:+83205687 Msa0431180:CDS
AGCCAAGCACGAGGAACAAT+AGG 0.457798 3_2:-83207588 None:intergenic
ATGATTGAATGGGAAAAGTT+GGG 0.459488 3_2:+83206722 Msa0431180:three_prime_UTR
GAAGGGAATTAGAGTGAAAG+AGG 0.460183 3_2:+83204932 Msa0431180:CDS
GTGAGATTGAGAGGTTGAGA+AGG 0.465030 3_2:+83205709 Msa0431180:CDS
GATTCCCACCAACCAACTCT+TGG 0.469023 3_2:-83206208 None:intergenic
ATAGATTGGGAAGAGTGAAA+TGG 0.469911 3_2:-83204769 None:intergenic
GGAGGAGGATATGGTGTTCA+TGG 0.471635 3_2:+83207078 Msa0431180:three_prime_UTR
CATTGTTCGCGGGTCAGTCT+AGG 0.473031 3_2:+83206987 Msa0431180:three_prime_UTR
ATGGAAGGATTGCACGAAAT+GGG 0.473051 3_2:+83205044 Msa0431180:CDS
GGTTCGAATCTCTGGTGTTA+CGG 0.475248 3_2:-83207862 None:intergenic
TAATCACCATATAAAGATAC+AGG 0.475577 3_2:-83207501 None:intergenic
CACGAGGAACAATAGGAGTA+TGG 0.476046 3_2:-83207581 None:intergenic
TGAATGGCTTTGTATGCAGC+AGG 0.477650 3_2:+83206514 Msa0431180:three_prime_UTR
CAAGCTATGCAGCAAGAGAC+TGG 0.480304 3_2:+83205648 Msa0431180:CDS
TAATCAACCACAGACTCAAT+TGG 0.480632 3_2:-83206011 None:intergenic
ATTCGTAATTCGTATCACTT+TGG 0.481209 3_2:+83207667 Msa0431180:three_prime_UTR
ATTTCGTGCAATCCTTCCAT+TGG 0.481224 3_2:-83205041 None:intergenic
GGGTGAAGAGAAATTTGGTT+TGG 0.483584 3_2:-83204699 None:intergenic
CATTAGGATAGAATAAGAAA+TGG 0.486421 3_2:-83206658 None:intergenic
GCGTTGAAATGAAGCGAAAA+CGG 0.487154 3_2:+83205925 Msa0431180:CDS
GGAAAGTTGGTAAGTATGAA+AGG 0.490210 3_2:-83204836 None:intergenic
AGCAACTTAATTTAAGGCGG+TGG 0.494578 3_2:-83204746 None:intergenic
TGAGATTGAGAGGTTGAGAA+GGG 0.495911 3_2:+83205710 Msa0431180:CDS
AAGGGAGCAATTATCTGCTA+TGG 0.496135 3_2:+83205788 Msa0431180:CDS
TGATGGTTGTCAGGTGGAGT+TGG 0.497598 3_2:+83207478 Msa0431180:three_prime_UTR
ATGATGTGTTGCTAGCAATT+CGG 0.498371 3_2:-83206772 None:intergenic
TTGTTCCTCGTGCTTGGCTG+TGG 0.498392 3_2:+83207592 Msa0431180:three_prime_UTR
GGCAGCAGCAGCATAATTCA+AGG 0.500409 3_2:+83205769 Msa0431180:CDS
CGATGGGAGTTTGCGAACGA+AGG 0.501252 3_2:+83205561 Msa0431180:CDS
AGCATCAACTAACTCAATGA+AGG 0.501749 3_2:+83204914 Msa0431180:exon
TACTTGCCATCTTGCCCAGA+TGG 0.503354 3_2:+83207691 Msa0431180:three_prime_UTR
TTGAGAGGTTGAGAAGGGAC+AGG 0.504469 3_2:+83205715 Msa0431180:CDS
CTAGCAACACATCATTCGTT+AGG 0.508340 3_2:+83206780 Msa0431180:three_prime_UTR
GGATCCAAATTTCTTTGACC+AGG 0.509136 3_2:+83206927 Msa0431180:three_prime_UTR
GTGTTCTGTACATTGTTCGC+GGG 0.509958 3_2:+83206977 Msa0431180:three_prime_UTR
TTCGCAAACTCCCATCGATC+CGG 0.510214 3_2:-83205555 None:intergenic
AAGTTGTCAAGATGATTGAA+TGG 0.521031 3_2:+83206711 Msa0431180:three_prime_UTR
CTGACAACCATCACTCCATC+AGG 0.521916 3_2:-83207468 None:intergenic
AATTATCTGCTATGGAAGCT+AGG 0.522811 3_2:+83205796 Msa0431180:CDS
CAGAGATGACAGTTCCCAAA+AGG 0.524119 3_2:-83206862 None:intergenic
CATATATATGAAGGGTTGAA+GGG 0.524858 3_2:+83207170 Msa0431180:three_prime_UTR
TGGGATTAGATAGATAGATT+GGG 0.526589 3_2:-83204782 None:intergenic
AGTTGTCAAGATGATTGAAT+GGG 0.528119 3_2:+83206712 Msa0431180:three_prime_UTR
TTTAAGGCGGTGGATAGAGT+AGG 0.530038 3_2:-83204736 None:intergenic
CCAGAAGATGAAGTTGTGAT+TGG 0.531597 3_2:+83206230 Msa0431180:CDS
ACCACACCATCTGGGCAAGA+TGG 0.532508 3_2:-83207697 None:intergenic
GACTACTATTGAGTCTGAGA+TGG 0.532873 3_2:+83206061 Msa0431180:CDS
CTTGAGAGCATATATATGAA+GGG 0.534563 3_2:+83207162 Msa0431180:three_prime_UTR
CTGAACCAAGAGTTGGTTGG+TGG 0.536158 3_2:+83206203 Msa0431180:CDS
AAAAGTTGATCCGGATCGAT+GGG 0.538609 3_2:+83205545 Msa0431180:CDS
CACTGGTGATTGTATATACG+TGG 0.538875 3_2:+83207535 Msa0431180:three_prime_UTR
AGTAGGAAGGTTCTAGAGAC+GGG 0.539491 3_2:-83204719 None:intergenic
GAAAAGTTGATCCGGATCGA+TGG 0.539674 3_2:+83205544 Msa0431180:CDS
GATGGGAGTTTGCGAACGAA+GGG 0.539714 3_2:+83205562 Msa0431180:CDS
AATAAAGGATACACATGTGA+TGG 0.541183 3_2:-83206559 None:intergenic
GTTCCCAAAAGGAACAGAAT+CGG 0.541652 3_2:-83206851 None:intergenic
GGATAGAATAAGAAATGGTA+TGG 0.543377 3_2:-83206653 None:intergenic
GGATTTACTGAACCAAGAGT+TGG 0.543897 3_2:+83206196 Msa0431180:CDS
CTAAAGATCAGAATTTATCC+TGG 0.545378 3_2:-83206945 None:intergenic
AGGGTCTCATTGTTATGTGT+TGG 0.546403 3_2:+83207423 Msa0431180:three_prime_UTR
TTTGGGTGATGCTGTGTGGG+AGG 0.547697 3_2:+83206175 Msa0431180:CDS
TGTGTTCTGTACATTGTTCG+CGG 0.551582 3_2:+83206976 Msa0431180:three_prime_UTR
ATATGGTGATTAACTTCAAG+AGG 0.551845 3_2:+83207512 Msa0431180:three_prime_UTR
TGATTAACTTCAAGAGGCAC+TGG 0.556625 3_2:+83207518 Msa0431180:three_prime_UTR
TAATTTGGGTGATGCTGTGT+GGG 0.557732 3_2:+83206172 Msa0431180:CDS
TGGATCTTCAACAACATCAA+AGG 0.559140 3_2:-83205090 None:intergenic
GAATTGTAAATCGAATAGCT+TGG 0.564977 3_2:+83207109 Msa0431180:three_prime_UTR
GAGTAGGAAGGTTCTAGAGA+CGG 0.570181 3_2:-83204720 None:intergenic
AAATTACTCTCATTACCACT+TGG 0.571022 3_2:-83206155 None:intergenic
AAATCTTACACCAAAACCAA+TGG 0.575232 3_2:+83205025 Msa0431180:CDS
GTCTTGAAGGTGAGATTGAG+AGG 0.580331 3_2:+83205700 Msa0431180:CDS
GCCATCTTGCCCAGATGGTG+TGG 0.581107 3_2:+83207696 Msa0431180:three_prime_UTR
GGAAGATTGTACTGCAGAAG+AGG 0.582683 3_2:+83206536 Msa0431180:three_prime_UTR
ATGCTTTATCCATAAATTTG+GGG 0.583932 3_2:+83207760 Msa0431180:three_prime_UTR
TGTGAATTGAGTGTTGCTGG+TGG 0.588769 3_2:+83207368 Msa0431180:three_prime_UTR
CTCTTGTCACGAGCAGCAAG+AGG 0.588881 3_2:+83206034 Msa0431180:CDS
CCATGAAACAATGGAATCAG+TGG 0.596228 3_2:-83205114 None:intergenic
TATGGATAAAGCATTGTCAA+CGG 0.599610 3_2:-83207751 None:intergenic
GAAACAATGGAATCAGTGGA+TGG 0.602123 3_2:-83205110 None:intergenic
ATTTAAACACCACACCATCT+GGG 0.605166 3_2:-83207705 None:intergenic
CAAAACCCATTTGATCAACA+AGG 0.605749 3_2:-83206328 None:intergenic
TAATTGATGTAGAATATGAA+TGG 0.607697 3_2:+83206498 Msa0431180:intron
GCATCAACTAACTCAATGAA+GGG 0.610881 3_2:+83204915 Msa0431180:exon
CTGGTGATTGTATATACGTG+GGG 0.612769 3_2:+83207537 Msa0431180:three_prime_UTR
TGGTGCTTGTATTGAATTAG+GGG 0.613155 3_2:+83205671 Msa0431180:CDS
TGAGAGGTTGAGAAGGGACA+GGG 0.615785 3_2:+83205716 Msa0431180:CDS
TGAACCAAGAGTTGGTTGGT+GGG 0.615910 3_2:+83206204 Msa0431180:CDS
GATTCCATTGTTTCATGGAG+CGG 0.618876 3_2:+83205119 Msa0431180:CDS
AAATAATGATAATTGGACTG+TGG 0.619002 3_2:+83206295 Msa0431180:CDS
AACCACAGACTCAATTGGCA+CGG 0.620284 3_2:-83206006 None:intergenic
TGTAAGATTTGAACCCGAAG+AGG 0.623342 3_2:-83205012 None:intergenic
GCAGCAGCAGCATAATTCAA+GGG 0.624420 3_2:+83205770 Msa0431180:CDS
GGCCGTGCCAATTGAGTCTG+TGG 0.628717 3_2:+83206004 Msa0431180:CDS
AACGGGGCCTGATGGAGTGA+TGG 0.628748 3_2:+83207461 Msa0431180:three_prime_UTR
TTCTCAAATTGATGTGCCCG+TGG 0.628790 3_2:+83206259 Msa0431180:CDS
CATCAGGCCCCGTTTACAAG+AGG 0.628875 3_2:-83207452 None:intergenic
ATGGAGTGATGGTTGTCAGG+TGG 0.629208 3_2:+83207472 Msa0431180:three_prime_UTR
GTAACGAGGTAAAATAGCAG+TGG 0.630092 3_2:-83205183 None:intergenic
AGCTCCGCTCCATGAAACAA+TGG 0.631104 3_2:-83205123 None:intergenic
CTTACACCAAAACCAATGGA+AGG 0.637289 3_2:+83205029 Msa0431180:CDS
TCAAATTGATGTGCCCGTGG+AGG 0.639975 3_2:+83206262 Msa0431180:CDS
TGGAGCAACTTAATTTAAGG+CGG 0.645189 3_2:-83204749 None:intergenic
TTACTGAACCAAGAGTTGGT+TGG 0.648299 3_2:+83206200 Msa0431180:CDS
TCTTGTCACGAGCAGCAAGA+GGG 0.651954 3_2:+83206035 Msa0431180:CDS
GCACAGAATAGAGAGTTGAA+AGG 0.656703 3_2:+83205903 Msa0431180:CDS
ACTGGTGATTGTATATACGT+GGG 0.658637 3_2:+83207536 Msa0431180:three_prime_UTR
TACTACAAATTACAAAACTG+AGG 0.659342 3_2:-83207401 None:intergenic
TGGTGATTGTATATACGTGG+GGG 0.663825 3_2:+83207538 Msa0431180:three_prime_UTR
AGGCGGTGGATAGAGTAGGA+AGG 0.671667 3_2:-83204732 None:intergenic
GTAATTTGGGTGATGCTGTG+TGG 0.674970 3_2:+83206171 Msa0431180:CDS
TAACAAAGTTCATACCAGCA+AGG 0.675115 3_2:-83206410 None:intergenic
AATAACCACAGCCAAGCACG+AGG 0.677918 3_2:-83207597 None:intergenic
TTGAAATGAAGCGAAAACGG+AGG 0.685238 3_2:+83205928 Msa0431180:CDS
GCATTGAGTTCAGTTCCAAG+TGG 0.687922 3_2:+83206140 Msa0431180:CDS
TTACTGTGTTTGAAGTAACG+AGG 0.690403 3_2:-83205197 None:intergenic
GAATGGCTTTGTATGCAGCA+GGG 0.693731 3_2:+83206515 Msa0431180:three_prime_UTR
GGTGATTGTATATACGTGGG+GGG 0.696287 3_2:+83207539 Msa0431180:three_prime_UTR
GCTATGCAGCAAGAGACTGG+TGG 0.743962 3_2:+83205651 Msa0431180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAGTTAAAAACATT+AGG - chr3_2:83206677-83206696 None:intergenic 10.0%
!! TTGGATTAAAATATATATTA+AGG + chr3_2:83207128-83207147 Msa0431180:three_prime_UTR 10.0%
!! TGGATTAAAATATATATTAA+GGG + chr3_2:83207129-83207148 Msa0431180:three_prime_UTR 10.0%
!!! TTTGTTATTGTTATTGTTAT+TGG + chr3_2:83206426-83206445 Msa0431180:intron 15.0%
!!! TCAATCTTTTATACAACAAT+TGG + chr3_2:83205881-83205900 Msa0431180:CDS 20.0%
!! TGGTAGAAAATAATGATAAT+TGG + chr3_2:83206288-83206307 Msa0431180:CDS 20.0%
!! TTGATAAATAATTTCTGTGA+TGG + chr3_2:83206475-83206494 Msa0431180:intron 20.0%
!! TAATTGATGTAGAATATGAA+TGG + chr3_2:83206498-83206517 Msa0431180:intron 20.0%
!!! TGTTTTTAACTATATTTTGC+AGG + chr3_2:83206679-83206698 Msa0431180:three_prime_UTR 20.0%
!! AATGCTTTATCCATAAATTT+GGG + chr3_2:83207759-83207778 Msa0431180:three_prime_UTR 20.0%
!!! TACAAACTATTCTAAAACTA+GGG - chr3_2:83207816-83207835 None:intergenic 20.0%
!!! TTACAAACTATTCTAAAACT+AGG - chr3_2:83207817-83207836 None:intergenic 20.0%
! AAATGGAGCAACTTAATTTA+AGG - chr3_2:83204755-83204774 None:intergenic 25.0%
!!! GGTTTGTTTGTTTTAGTTTT+GGG - chr3_2:83204804-83204823 None:intergenic 25.0%
!!! TGGTTTGTTTGTTTTAGTTT+TGG - chr3_2:83204805-83204824 None:intergenic 25.0%
! TATGAAAGGTAGTTATGTTA+TGG - chr3_2:83204825-83204844 None:intergenic 25.0%
! AAGTGATAGTTAACTTACAT+AGG - chr3_2:83205252-83205271 None:intergenic 25.0%
! TTGAATGTAATCATATGTGT+CGG - chr3_2:83205389-83205408 None:intergenic 25.0%
!! AATTTTTGTGTTCATATGCA+GGG + chr3_2:83205516-83205535 Msa0431180:intron 25.0%
! AAATAATGATAATTGGACTG+TGG + chr3_2:83206295-83206314 Msa0431180:CDS 25.0%
!! TGTTGTTTGGTTCAAAATAA+AGG - chr3_2:83206577-83206596 None:intergenic 25.0%
! CATTAGGATAGAATAAGAAA+TGG - chr3_2:83206661-83206680 None:intergenic 25.0%
! TCAATGCTTACAATTGAATA+TGG + chr3_2:83207215-83207234 Msa0431180:three_prime_UTR 25.0%
! TTGAGTGAATATTAGTGATT+TGG + chr3_2:83207317-83207336 Msa0431180:three_prime_UTR 25.0%
! TACTACAAATTACAAAACTG+AGG - chr3_2:83207404-83207423 None:intergenic 25.0%
!!! TCAGTTTTGTAATTTGTAGT+AGG + chr3_2:83207403-83207422 Msa0431180:three_prime_UTR 25.0%
!!! CAGTTTTGTAATTTGTAGTA+GGG + chr3_2:83207404-83207423 Msa0431180:three_prime_UTR 25.0%
! TAATCACCATATAAAGATAC+AGG - chr3_2:83207504-83207523 None:intergenic 25.0%
! TGGTGTTTAAATAGACATAT+TGG + chr3_2:83207716-83207735 Msa0431180:three_prime_UTR 25.0%
! CAATGCTTTATCCATAAATT+TGG + chr3_2:83207758-83207777 Msa0431180:three_prime_UTR 25.0%
! ATGCTTTATCCATAAATTTG+GGG + chr3_2:83207760-83207779 Msa0431180:three_prime_UTR 25.0%
!! AGAGAAATTTGGTTTGGTAA+TGG - chr3_2:83204696-83204715 None:intergenic 30.0%
TGGGATTAGATAGATAGATT+GGG - chr3_2:83204785-83204804 None:intergenic 30.0%
TTGGGATTAGATAGATAGAT+TGG - chr3_2:83204786-83204805 None:intergenic 30.0%
!!! TCGATTTTGGAGCTTAATTT+TGG - chr3_2:83204860-83204879 None:intergenic 30.0%
!! TGTGATGTGATAATCGATTT+TGG - chr3_2:83204873-83204892 None:intergenic 30.0%
AAATCTTACACCAAAACCAA+TGG + chr3_2:83205025-83205044 Msa0431180:CDS 30.0%
! TTCAACAACATCAAAGGTTT+TGG - chr3_2:83205087-83205106 None:intergenic 30.0%
!! TCGTAATAGCTTTGTTGTTT+GGG + chr3_2:83205145-83205164 Msa0431180:CDS 30.0%
AAGAACAAATTCACAAACAC+CGG - chr3_2:83205452-83205471 None:intergenic 30.0%
! GAATTTTTGTGTTCATATGC+AGG + chr3_2:83205515-83205534 Msa0431180:intron 30.0%
AAATTACTCTCATTACCACT+TGG - chr3_2:83206158-83206177 None:intergenic 30.0%
! AAGTGGTAATGAGAGTAATT+TGG + chr3_2:83206157-83206176 Msa0431180:CDS 30.0%
! AGTGGTAATGAGAGTAATTT+GGG + chr3_2:83206158-83206177 Msa0431180:CDS 30.0%
!! GTTTTGAACCTTAGTCAAAT+TGG + chr3_2:83206345-83206364 Msa0431180:exon 30.0%
TTCTACAACCAATTTGACTA+AGG - chr3_2:83206356-83206375 None:intergenic 30.0%
AATAAAGGATACACATGTGA+TGG - chr3_2:83206562-83206581 None:intergenic 30.0%
GTTCACAACAATATGTTGTT+TGG - chr3_2:83206590-83206609 None:intergenic 30.0%
GGATAGAATAAGAAATGGTA+TGG - chr3_2:83206656-83206675 None:intergenic 30.0%
TCAATCATCTTGACAACTTT+GGG - chr3_2:83206710-83206729 None:intergenic 30.0%
TTCAATCATCTTGACAACTT+TGG - chr3_2:83206711-83206730 None:intergenic 30.0%
AAGTTGTCAAGATGATTGAA+TGG + chr3_2:83206711-83206730 Msa0431180:three_prime_UTR 30.0%
AGTTGTCAAGATGATTGAAT+GGG + chr3_2:83206712-83206731 Msa0431180:three_prime_UTR 30.0%
ATGATTGAATGGGAAAAGTT+GGG + chr3_2:83206722-83206741 Msa0431180:three_prime_UTR 30.0%
TTATCCTGGTCAAAGAAATT+TGG - chr3_2:83206934-83206953 None:intergenic 30.0%
CTAAAGATCAGAATTTATCC+TGG - chr3_2:83206948-83206967 None:intergenic 30.0%
GAATTGTAAATCGAATAGCT+TGG + chr3_2:83207109-83207128 Msa0431180:three_prime_UTR 30.0%
! TCTTGAGAGCATATATATGA+AGG + chr3_2:83207161-83207180 Msa0431180:three_prime_UTR 30.0%
! CTTGAGAGCATATATATGAA+GGG + chr3_2:83207162-83207181 Msa0431180:three_prime_UTR 30.0%
CATATATATGAAGGGTTGAA+GGG + chr3_2:83207170-83207189 Msa0431180:three_prime_UTR 30.0%
ATATGGTGATTAACTTCAAG+AGG + chr3_2:83207512-83207531 Msa0431180:three_prime_UTR 30.0%
ATTCGTAATTCGTATCACTT+TGG + chr3_2:83207667-83207686 Msa0431180:three_prime_UTR 30.0%
!! TATGGATAAAGCATTGTCAA+CGG - chr3_2:83207754-83207773 None:intergenic 30.0%
TGGAGCAACTTAATTTAAGG+CGG - chr3_2:83204752-83204771 None:intergenic 35.0%
ATAGATTGGGAAGAGTGAAA+TGG - chr3_2:83204772-83204791 None:intergenic 35.0%
!! GGAAAGTTGGTAAGTATGAA+AGG - chr3_2:83204839-83204858 None:intergenic 35.0%
!! GGAGCTTAATTTTGGAAAGT+TGG - chr3_2:83204852-83204871 None:intergenic 35.0%
AGCATCAACTAACTCAATGA+AGG + chr3_2:83204914-83204933 Msa0431180:exon 35.0%
GCATCAACTAACTCAATGAA+GGG + chr3_2:83204915-83204934 Msa0431180:exon 35.0%
TTAGCATATGTCAGTGTTGT+TGG + chr3_2:83204963-83204982 Msa0431180:CDS 35.0%
TAACTCTTCATCTTCCTCTT+CGG + chr3_2:83204998-83205017 Msa0431180:CDS 35.0%
!! TCAAAGGTTTTGGTGAGAAA+TGG - chr3_2:83205077-83205096 None:intergenic 35.0%
TGGATCTTCAACAACATCAA+AGG - chr3_2:83205093-83205112 None:intergenic 35.0%
!! CTCGTAATAGCTTTGTTGTT+TGG + chr3_2:83205144-83205163 Msa0431180:CDS 35.0%
! TTACTGTGTTTGAAGTAACG+AGG - chr3_2:83205200-83205219 None:intergenic 35.0%
!!! GGGTTTTAGAAAAGTTGATC+CGG + chr3_2:83205536-83205555 Msa0431180:intron 35.0%
GTGGTGCTTGTATTGAATTA+GGG + chr3_2:83205670-83205689 Msa0431180:CDS 35.0%
TGGTGCTTGTATTGAATTAG+GGG + chr3_2:83205671-83205690 Msa0431180:CDS 35.0%
TGTATTGAATTAGGGGAGTA+TGG + chr3_2:83205678-83205697 Msa0431180:CDS 35.0%
AATTATCTGCTATGGAAGCT+AGG + chr3_2:83205796-83205815 Msa0431180:CDS 35.0%
GAGAATTTGCAAGATGATTC+TGG + chr3_2:83205972-83205991 Msa0431180:CDS 35.0%
!! AAGATGATTCTGGAGCTATA+AGG + chr3_2:83205982-83206001 Msa0431180:CDS 35.0%
!! AGATGATTCTGGAGCTATAA+GGG + chr3_2:83205983-83206002 Msa0431180:CDS 35.0%
TAATCAACCACAGACTCAAT+TGG - chr3_2:83206014-83206033 None:intergenic 35.0%
TGAATCAAGCAGTGAAGTTA+AGG + chr3_2:83206109-83206128 Msa0431180:CDS 35.0%
! ATTTTCTACCAAATCCTCCA+CGG - chr3_2:83206279-83206298 None:intergenic 35.0%
CAAAACCCATTTGATCAACA+AGG - chr3_2:83206331-83206350 None:intergenic 35.0%
TAACAAAGTTCATACCAGCA+AGG - chr3_2:83206413-83206432 None:intergenic 35.0%
GATGATTGAATGGGAAAAGT+TGG + chr3_2:83206721-83206740 Msa0431180:three_prime_UTR 35.0%
! ATGATGTGTTGCTAGCAATT+CGG - chr3_2:83206775-83206794 None:intergenic 35.0%
AAACTCAAAAAAACTGTCGC+AGG - chr3_2:83206828-83206847 None:intergenic 35.0%
! CTCTTTTAGACTTGTCAAAG+AGG + chr3_2:83206906-83206925 Msa0431180:three_prime_UTR 35.0%
!! TGGTTGTTTTGTTAATCTCG+CGG + chr3_2:83207057-83207076 Msa0431180:three_prime_UTR 35.0%
GCATATATATGAAGGGTTGA+AGG + chr3_2:83207169-83207188 Msa0431180:three_prime_UTR 35.0%
!!! GAACTGCAGCTTTATTTTTG+AGG + chr3_2:83207339-83207358 Msa0431180:three_prime_UTR 35.0%
! TGGTGTTTTCCTCTTGTAAA+CGG + chr3_2:83207443-83207462 Msa0431180:three_prime_UTR 35.0%
! AGTTGGCCTGTATCTTTATA+TGG + chr3_2:83207495-83207514 Msa0431180:three_prime_UTR 35.0%
ACTGGTGATTGTATATACGT+GGG + chr3_2:83207536-83207555 Msa0431180:three_prime_UTR 35.0%
ATTTAAACACCACACCATCT+GGG - chr3_2:83207708-83207727 None:intergenic 35.0%
TATTTAAACACCACACCATC+TGG - chr3_2:83207709-83207728 None:intergenic 35.0%
GGGTGAAGAGAAATTTGGTT+TGG - chr3_2:83204702-83204721 None:intergenic 40.0%
! AGCAACTTAATTTAAGGCGG+TGG - chr3_2:83204749-83204768 None:intergenic 40.0%
GAAGGGAATTAGAGTGAAAG+AGG + chr3_2:83204932-83204951 Msa0431180:CDS 40.0%
AACTCTTCATCTTCCTCTTC+GGG + chr3_2:83204999-83205018 Msa0431180:CDS 40.0%
TGTAAGATTTGAACCCGAAG+AGG - chr3_2:83205015-83205034 None:intergenic 40.0%
CTTACACCAAAACCAATGGA+AGG + chr3_2:83205029-83205048 Msa0431180:CDS 40.0%
!!! TGCAATCCTTCCATTGGTTT+TGG - chr3_2:83205038-83205057 None:intergenic 40.0%
ATTTCGTGCAATCCTTCCAT+TGG - chr3_2:83205044-83205063 None:intergenic 40.0%
AATGGAAGGATTGCACGAAA+TGG + chr3_2:83205043-83205062 Msa0431180:CDS 40.0%
ATGGAAGGATTGCACGAAAT+GGG + chr3_2:83205044-83205063 Msa0431180:CDS 40.0%
!! AAGGTTTTGGTGAGAAATGG+AGG - chr3_2:83205074-83205093 None:intergenic 40.0%
GAAACAATGGAATCAGTGGA+TGG - chr3_2:83205113-83205132 None:intergenic 40.0%
CCATGAAACAATGGAATCAG+TGG - chr3_2:83205117-83205136 None:intergenic 40.0%
!! CCACTGATTCCATTGTTTCA+TGG + chr3_2:83205114-83205133 Msa0431180:CDS 40.0%
GATTCCATTGTTTCATGGAG+CGG + chr3_2:83205119-83205138 Msa0431180:CDS 40.0%
GTAACGAGGTAAAATAGCAG+TGG - chr3_2:83205186-83205205 None:intergenic 40.0%
CCAGACAATGTTGATGTATC+CGG + chr3_2:83205430-83205449 Msa0431180:intron 40.0%
! AAAAGTTGATCCGGATCGAT+GGG + chr3_2:83205545-83205564 Msa0431180:CDS 40.0%
GGTGGTGCTTGTATTGAATT+AGG + chr3_2:83205669-83205688 Msa0431180:CDS 40.0%
TGAGATTGAGAGGTTGAGAA+GGG + chr3_2:83205710-83205729 Msa0431180:CDS 40.0%
TGGCTGAGATTGTGAAGTTA+AGG + chr3_2:83205748-83205767 Msa0431180:CDS 40.0%
AAGGGAGCAATTATCTGCTA+TGG + chr3_2:83205788-83205807 Msa0431180:CDS 40.0%
GCACAGAATAGAGAGTTGAA+AGG + chr3_2:83205903-83205922 Msa0431180:CDS 40.0%
GCGTTGAAATGAAGCGAAAA+CGG + chr3_2:83205925-83205944 Msa0431180:CDS 40.0%
TTGAAATGAAGCGAAAACGG+AGG + chr3_2:83205928-83205947 Msa0431180:CDS 40.0%
GACTACTATTGAGTCTGAGA+TGG + chr3_2:83206061-83206080 Msa0431180:CDS 40.0%
TAATTTGGGTGATGCTGTGT+GGG + chr3_2:83206172-83206191 Msa0431180:CDS 40.0%
GGATTTACTGAACCAAGAGT+TGG + chr3_2:83206196-83206215 Msa0431180:CDS 40.0%
! TTACTGAACCAAGAGTTGGT+TGG + chr3_2:83206200-83206219 Msa0431180:CDS 40.0%
CCAATCACAACTTCATCTTC+TGG - chr3_2:83206233-83206252 None:intergenic 40.0%
CCAGAAGATGAAGTTGTGAT+TGG + chr3_2:83206230-83206249 Msa0431180:CDS 40.0%
! TTTTCTACCAAATCCTCCAC+GGG - chr3_2:83206278-83206297 None:intergenic 40.0%
!! CAGAGCCTTGTTGATCAAAT+GGG + chr3_2:83206323-83206342 Msa0431180:CDS 40.0%
CTAGCAACACATCATTCGTT+AGG + chr3_2:83206780-83206799 Msa0431180:three_prime_UTR 40.0%
!! GGTATCTGGGTTTTGTCAAA+TGG - chr3_2:83206807-83206826 None:intergenic 40.0%
AAAAACTGTCGCAGGTATCT+GGG - chr3_2:83206820-83206839 None:intergenic 40.0%
AAAAAACTGTCGCAGGTATC+TGG - chr3_2:83206821-83206840 None:intergenic 40.0%
GTTCCCAAAAGGAACAGAAT+CGG - chr3_2:83206854-83206873 None:intergenic 40.0%
GGATCCAAATTTCTTTGACC+AGG + chr3_2:83206927-83206946 Msa0431180:three_prime_UTR 40.0%
TGTGTTCTGTACATTGTTCG+CGG + chr3_2:83206976-83206995 Msa0431180:three_prime_UTR 40.0%
! CAGTTTGCTTTCTTTGTTGC+TGG + chr3_2:83207037-83207056 Msa0431180:three_prime_UTR 40.0%
!! TTGTTTTGTTAATCTCGCGG+AGG + chr3_2:83207060-83207079 Msa0431180:three_prime_UTR 40.0%
GGATATGGTGTTCATGGAAT+TGG + chr3_2:83207084-83207103 Msa0431180:three_prime_UTR 40.0%
!!! CTGCTTTGTTGTTTTGCTGT+TGG + chr3_2:83207239-83207258 Msa0431180:three_prime_UTR 40.0%
!!! CTTTGTTGTTTTGCTGTTGG+TGG + chr3_2:83207242-83207261 Msa0431180:three_prime_UTR 40.0%
!!! TTGTTTTGCTGTTGGTGGAA+TGG + chr3_2:83207247-83207266 Msa0431180:three_prime_UTR 40.0%
!!! CTGCAGCTTTATTTTTGAGG+TGG + chr3_2:83207342-83207361 Msa0431180:three_prime_UTR 40.0%
! CATTGTGAATTGAGTGTTGC+TGG + chr3_2:83207365-83207384 Msa0431180:three_prime_UTR 40.0%
AGGGTCTCATTGTTATGTGT+TGG + chr3_2:83207423-83207442 Msa0431180:three_prime_UTR 40.0%
! GGTGTTTTCCTCTTGTAAAC+GGG + chr3_2:83207444-83207463 Msa0431180:three_prime_UTR 40.0%
! GTGTTTTCCTCTTGTAAACG+GGG + chr3_2:83207445-83207464 Msa0431180:three_prime_UTR 40.0%
! TGATTAACTTCAAGAGGCAC+TGG + chr3_2:83207518-83207537 Msa0431180:three_prime_UTR 40.0%
CACTGGTGATTGTATATACG+TGG + chr3_2:83207535-83207554 Msa0431180:three_prime_UTR 40.0%
CTGGTGATTGTATATACGTG+GGG + chr3_2:83207537-83207556 Msa0431180:three_prime_UTR 40.0%
TGGTGATTGTATATACGTGG+GGG + chr3_2:83207538-83207557 Msa0431180:three_prime_UTR 40.0%
GAATCAACGCCCCAAATTTA+TGG - chr3_2:83207772-83207791 None:intergenic 40.0%
GAGACGGGTGAAGAGAAATT+TGG - chr3_2:83204707-83204726 None:intergenic 45.0%
!! AGTAGGAAGGTTCTAGAGAC+GGG - chr3_2:83204722-83204741 None:intergenic 45.0%
!! GAGTAGGAAGGTTCTAGAGA+CGG - chr3_2:83204723-83204742 None:intergenic 45.0%
! TTTAAGGCGGTGGATAGAGT+AGG - chr3_2:83204739-83204758 None:intergenic 45.0%
!! GTTTTGGTGAGAAATGGAGG+TGG - chr3_2:83205071-83205090 None:intergenic 45.0%
CCGGATACATCAACATTGTC+TGG - chr3_2:83205433-83205452 None:intergenic 45.0%
! GAAAAGTTGATCCGGATCGA+TGG + chr3_2:83205544-83205563 Msa0431180:CDS 45.0%
!!! CGAACGAAGGGTTTTTAGCT+GGG + chr3_2:83205574-83205593 Msa0431180:CDS 45.0%
! TTAGGGGAGTATGGTCTTGA+AGG + chr3_2:83205687-83205706 Msa0431180:CDS 45.0%
GTCTTGAAGGTGAGATTGAG+AGG + chr3_2:83205700-83205719 Msa0431180:CDS 45.0%
GTGAGATTGAGAGGTTGAGA+AGG + chr3_2:83205709-83205728 Msa0431180:CDS 45.0%
!! AAGGGACAGGGCTGTTTTAA+TGG + chr3_2:83205728-83205747 Msa0431180:CDS 45.0%
GCAGCAGCAGCATAATTCAA+GGG + chr3_2:83205770-83205789 Msa0431180:CDS 45.0%
AACCACAGACTCAATTGGCA+CGG - chr3_2:83206009-83206028 None:intergenic 45.0%
GCATTGAGTTCAGTTCCAAG+TGG + chr3_2:83206140-83206159 Msa0431180:CDS 45.0%
GTAATTTGGGTGATGCTGTG+TGG + chr3_2:83206171-83206190 Msa0431180:CDS 45.0%
! TGAACCAAGAGTTGGTTGGT+GGG + chr3_2:83206204-83206223 Msa0431180:CDS 45.0%
TTCTCAAATTGATGTGCCCG+TGG + chr3_2:83206259-83206278 Msa0431180:CDS 45.0%
!! GCAGAGCCTTGTTGATCAAA+TGG + chr3_2:83206322-83206341 Msa0431180:CDS 45.0%
!! TGAATGGCTTTGTATGCAGC+AGG + chr3_2:83206514-83206533 Msa0431180:three_prime_UTR 45.0%
!! GAATGGCTTTGTATGCAGCA+GGG + chr3_2:83206515-83206534 Msa0431180:three_prime_UTR 45.0%
GGAAGATTGTACTGCAGAAG+AGG + chr3_2:83206536-83206555 Msa0431180:three_prime_UTR 45.0%
!! TCAGCCGATTCTGTTCCTTT+TGG + chr3_2:83206847-83206866 Msa0431180:three_prime_UTR 45.0%
!! CAGCCGATTCTGTTCCTTTT+GGG + chr3_2:83206848-83206867 Msa0431180:three_prime_UTR 45.0%
CAGAGATGACAGTTCCCAAA+AGG - chr3_2:83206865-83206884 None:intergenic 45.0%
!! CTTTTGGGAACTGTCATCTC+TGG + chr3_2:83206863-83206882 Msa0431180:three_prime_UTR 45.0%
GTGTTCTGTACATTGTTCGC+GGG + chr3_2:83206977-83206996 Msa0431180:three_prime_UTR 45.0%
! TTTTGTTAATCTCGCGGAGG+AGG + chr3_2:83207063-83207082 Msa0431180:three_prime_UTR 45.0%
!!! TTTTGCTGTTGGTGGAATGG+TGG + chr3_2:83207250-83207269 Msa0431180:three_prime_UTR 45.0%
!! TGTTGGTGGAATGGTGGATT+TGG + chr3_2:83207256-83207275 Msa0431180:three_prime_UTR 45.0%
! TGTGAATTGAGTGTTGCTGG+TGG + chr3_2:83207368-83207387 Msa0431180:three_prime_UTR 45.0%
GGTGATTGTATATACGTGGG+GGG + chr3_2:83207539-83207558 Msa0431180:three_prime_UTR 45.0%
CACGAGGAACAATAGGAGTA+TGG - chr3_2:83207584-83207603 None:intergenic 45.0%
!! TTGAAAAAAAAAAAAAAAAA+AGG - chr3_2:83207627-83207646 None:intergenic 5.0%
AGCTCCGCTCCATGAAACAA+TGG - chr3_2:83205126-83205145 None:intergenic 50.0%
TTCGCAAACTCCCATCGATC+CGG - chr3_2:83205558-83205577 None:intergenic 50.0%
GATGGGAGTTTGCGAACGAA+GGG + chr3_2:83205562-83205581 Msa0431180:CDS 50.0%
!!! GCGAACGAAGGGTTTTTAGC+TGG + chr3_2:83205573-83205592 Msa0431180:CDS 50.0%
!!! AAGGGTTTTTAGCTGGGCAG+AGG + chr3_2:83205580-83205599 Msa0431180:CDS 50.0%
CAAGCTATGCAGCAAGAGAC+TGG + chr3_2:83205648-83205667 Msa0431180:CDS 50.0%
TTGAGAGGTTGAGAAGGGAC+AGG + chr3_2:83205715-83205734 Msa0431180:CDS 50.0%
TGAGAGGTTGAGAAGGGACA+GGG + chr3_2:83205716-83205735 Msa0431180:CDS 50.0%
GGCAGCAGCAGCATAATTCA+AGG + chr3_2:83205769-83205788 Msa0431180:CDS 50.0%
! GCTCACTGCTAGTTCGAGTT+TGG + chr3_2:83205950-83205969 Msa0431180:CDS 50.0%
TCTTGTCACGAGCAGCAAGA+GGG + chr3_2:83206035-83206054 Msa0431180:CDS 50.0%
! CTGAACCAAGAGTTGGTTGG+TGG + chr3_2:83206203-83206222 Msa0431180:CDS 50.0%
GATTCCCACCAACCAACTCT+TGG - chr3_2:83206211-83206230 None:intergenic 50.0%
TCAAATTGATGTGCCCGTGG+AGG + chr3_2:83206262-83206281 Msa0431180:CDS 50.0%
! TCACTTGAGTTGCACCTTGC+TGG + chr3_2:83206396-83206415 Msa0431180:three_prime_UTR 50.0%
TAATCTCGCGGAGGAGGATA+TGG + chr3_2:83207069-83207088 Msa0431180:three_prime_UTR 50.0%
GGAGGAGGATATGGTGTTCA+TGG + chr3_2:83207078-83207097 Msa0431180:three_prime_UTR 50.0%
CTGACAACCATCACTCCATC+AGG - chr3_2:83207471-83207490 None:intergenic 50.0%
CTGATGGAGTGATGGTTGTC+AGG + chr3_2:83207469-83207488 Msa0431180:three_prime_UTR 50.0%
ATGGAGTGATGGTTGTCAGG+TGG + chr3_2:83207472-83207491 Msa0431180:three_prime_UTR 50.0%
TGATGGTTGTCAGGTGGAGT+TGG + chr3_2:83207478-83207497 Msa0431180:three_prime_UTR 50.0%
CTCCTATTGTTCCTCGTGCT+TGG + chr3_2:83207586-83207605 Msa0431180:three_prime_UTR 50.0%
AGCCAAGCACGAGGAACAAT+AGG - chr3_2:83207591-83207610 None:intergenic 50.0%
AATAACCACAGCCAAGCACG+AGG - chr3_2:83207600-83207619 None:intergenic 50.0%
TACTTGCCATCTTGCCCAGA+TGG + chr3_2:83207691-83207710 Msa0431180:three_prime_UTR 50.0%
AGGCGGTGGATAGAGTAGGA+AGG - chr3_2:83204735-83204754 None:intergenic 55.0%
CGATGGGAGTTTGCGAACGA+AGG + chr3_2:83205561-83205580 Msa0431180:CDS 55.0%
GCTATGCAGCAAGAGACTGG+TGG + chr3_2:83205651-83205670 Msa0431180:CDS 55.0%
CTCTTGTCACGAGCAGCAAG+AGG + chr3_2:83206034-83206053 Msa0431180:CDS 55.0%
TTTGGGTGATGCTGTGTGGG+AGG + chr3_2:83206175-83206194 Msa0431180:CDS 55.0%
TGATGTGCCCGTGGAGGATT+TGG + chr3_2:83206268-83206287 Msa0431180:CDS 55.0%
CATTGTTCGCGGGTCAGTCT+AGG + chr3_2:83206987-83207006 Msa0431180:three_prime_UTR 55.0%
CATCAGGCCCCGTTTACAAG+AGG - chr3_2:83207455-83207474 None:intergenic 55.0%
CTCTTGTAAACGGGGCCTGA+TGG + chr3_2:83207453-83207472 Msa0431180:three_prime_UTR 55.0%
TTGTTCCTCGTGCTTGGCTG+TGG + chr3_2:83207592-83207611 Msa0431180:three_prime_UTR 55.0%
ACCACACCATCTGGGCAAGA+TGG - chr3_2:83207700-83207719 None:intergenic 55.0%
GGCCGTGCCAATTGAGTCTG+TGG + chr3_2:83206004-83206023 Msa0431180:CDS 60.0%
AACGGGGCCTGATGGAGTGA+TGG + chr3_2:83207461-83207480 Msa0431180:three_prime_UTR 60.0%
GCCATCTTGCCCAGATGGTG+TGG + chr3_2:83207696-83207715 Msa0431180:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 83204683 83207883 83204683 ID=Msa0431180;Name=Msa0431180
chr3_2 mRNA 83204683 83207883 83204683 ID=Msa0431180-mRNA-1;Parent=Msa0431180;Name=Msa0431180-mRNA-1;_AED=0.02;_eAED=0.02;_QI=247|1|1|1|0.5|0.33|3|1433|381
chr3_2 exon 83204683 83205253 83204683 ID=Msa0431180-mRNA-1:exon:23183;Parent=Msa0431180-mRNA-1
chr3_2 exon 83205537 83206417 83205537 ID=Msa0431180-mRNA-1:exon:23184;Parent=Msa0431180-mRNA-1
chr3_2 exon 83206510 83207883 83206510 ID=Msa0431180-mRNA-1:exon:23185;Parent=Msa0431180-mRNA-1
chr3_2 five_prime_UTR 83204683 83204929 83204683 ID=Msa0431180-mRNA-1:five_prime_utr;Parent=Msa0431180-mRNA-1
chr3_2 CDS 83204930 83205253 83204930 ID=Msa0431180-mRNA-1:cds;Parent=Msa0431180-mRNA-1
chr3_2 CDS 83205537 83206358 83205537 ID=Msa0431180-mRNA-1:cds;Parent=Msa0431180-mRNA-1
chr3_2 three_prime_UTR 83206359 83206417 83206359 ID=Msa0431180-mRNA-1:three_prime_utr;Parent=Msa0431180-mRNA-1
chr3_2 three_prime_UTR 83206510 83207883 83206510 ID=Msa0431180-mRNA-1:three_prime_utr;Parent=Msa0431180-mRNA-1
Gene Sequence

>Msa0431180

ATGAAGGGAATTAGAGTGAAAGAGGAAGAAACATTAGCATATGTCAGTGTTGTTGGTTCAACATCATGTAACTCTTCATCTTCCTCTTCGGGTTCAAATCTTACACCAAAACCAATGGAAGGATTGCACGAAATGGGTCCACCTCCATTTCTCACCAAAACCTTTGATGTTGTTGAAGATCCATCCACTGATTCCATTGTTTCATGGAGCGGAGCTCGTAATAGCTTTGTTGTTTGGGATCTTCACAAATTCTCCACTGCTATTTTACCTCGTTACTTCAAACACAGTAATTTCTCTAGCTTCGTTCGACAACTCAATACCTATGGTTTTAGAAAAGTTGATCCGGATCGATGGGAGTTTGCGAACGAAGGGTTTTTAGCTGGGCAGAGGAACTTGTTGAAAACAATCAAGAGAAGAAGAAATGTGACACAATCACAAGCTATGCAGCAAGAGACTGGTGGTGCTTGTATTGAATTAGGGGAGTATGGTCTTGAAGGTGAGATTGAGAGGTTGAGAAGGGACAGGGCTGTTTTAATGGCTGAGATTGTGAAGTTAAGGCAGCAGCAGCATAATTCAAGGGAGCAATTATCTGCTATGGAAGCTAGGTTGTTGATTACTGAGAAGAAACATCAACAGATGATGAATTTTCTTGCAAAAGCACTTAGCAATCAATCTTTTATACAACAATTGGCACAGAATAGAGAGTTGAAAGGCGTTGAAATGAAGCGAAAACGGAGGCTCACTGCTAGTTCGAGTTTGGAGAATTTGCAAGATGATTCTGGAGCTATAAGGGCCGTGCCAATTGAGTCTGTGGTTGATTACTCTTGTCACGAGCAGCAAGAGGGTTTGACTACTATTGAGTCTGAGATGGAGACACTGTTAAGTGCTTATGATAATGAATCAAGCAGTGAAGTTAAGGACTACAGTGCATTGAGTTCAGTTCCAAGTGGTAATGAGAGTAATTTGGGTGATGCTGTGTGGGAGGATTTACTGAACCAAGAGTTGGTTGGTGGGAATCCAGAAGATGAAGTTGTGATTGGTGATTTTTCTCAAATTGATGTGCCCGTGGAGGATTTGGTAGAAAATAATGATAATTGGACTGTGGATTTGCAGAGCCTTGTTGATCAAATGGGTTTTGAACCTTAG
Protein sequence

>Msa0431180

MKGIRVKEEETLAYVSVVGSTSCNSSSSSSGSNLTPKPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNVTQSQAMQQETGGACIELGEYGLEGEIERLRRDRAVLMAEIVKLRQQQHNSREQLSAMEARLLITEKKHQQMMNFLAKALSNQSFIQQLAQNRELKGVEMKRKRRLTASSSLENLQDDSGAIRAVPIESVVDYSCHEQQEGLTTIESEMETLLSAYDNESSSEVKDYSALSSVPSGNESNLGDAVWEDLLNQELVGGNPEDEVVIGDFSQIDVPVEDLVENNDNWTVDLQSLVDQMGFEP*