AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476300

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476300 MtrunA17_Chr3g0135831 95.801 381 13 1 1 381 1 378 0.0 751
Msa0476300 MtrunA17_Chr7g0260331 54.924 264 112 2 8 264 8 271 7.44e-94 285
Msa0476300 MtrunA17_Chr1g0204741 57.831 249 92 6 36 273 27 273 5.85e-92 279
Msa0476300 MtrunA17_Chr5g0410881 55.357 224 84 4 36 247 21 240 1.73e-80 255
Msa0476300 MtrunA17_Chr4g0071051 40.431 371 177 11 24 376 76 420 7.72e-77 243
Msa0476300 MtrunA17_Chr4g0039891 54.808 208 86 2 48 247 11 218 3.06e-73 236
Msa0476300 MtrunA17_Chr1g0185131 44.224 303 143 8 36 331 19 302 5.25e-73 231
Msa0476300 MtrunA17_Chr6g0485571 45.274 201 106 2 49 249 11 207 5.74e-53 179
Msa0476300 MtrunA17_Chr8g0379701 40.948 232 129 2 48 275 11 238 7.18e-50 172
Msa0476300 MtrunA17_Chr8g0392001 45.876 194 98 2 49 235 22 215 5.05e-49 169
Msa0476300 MtrunA17_Chr2g0330821 40.933 193 110 1 43 235 73 261 5.47e-46 161
Msa0476300 MtrunA17_Chr8g0378061 43.284 201 104 5 50 247 23 216 7.02e-46 164
Msa0476300 MtrunA17_Chr6g0467041 42.365 203 107 5 49 248 22 217 7.87e-46 160
Msa0476300 MtrunA17_Chr2g0284481 41.243 177 101 1 48 221 14 190 1.71e-43 155
Msa0476300 MtrunA17_Chr5g0397881 62.766 94 35 0 47 140 22 115 4.91e-38 140
Msa0476300 MtrunA17_Chr7g0257331 45.062 162 76 3 40 188 9 170 1.57e-37 135
Msa0476300 MtrunA17_Chr3g0134031 56.757 111 43 1 43 153 18 123 9.16e-37 137
Msa0476300 MtrunA17_Chr5g0402291 55.882 102 45 0 46 147 6 107 9.21e-37 135
Msa0476300 MtrunA17_Chr6g0472421 58.511 94 39 0 47 140 31 124 8.45e-35 130
Msa0476300 MtrunA17_Chr1g0203601 54.206 107 49 0 47 153 16 122 1.23e-34 129
Msa0476300 MtrunA17_Chr1g0179311 38.537 205 120 4 109 310 14 215 2.31e-34 130
Msa0476300 MtrunA17_Chr8g0375041 52.727 110 50 1 44 153 4 111 5.25e-34 126
Msa0476300 MtrunA17_Chr5g0441531 60.638 94 37 0 47 140 23 116 6.69e-34 126
Msa0476300 MtrunA17_Chr4g0047421 47.009 117 53 2 28 140 17 128 5.03e-29 112
Msa0476300 MtrunA17_Chr1g0179321 63.514 74 27 0 35 108 35 108 2.78e-26 101
Msa0476300 MtrunA17_Chr4g0023771 51.429 70 33 1 40 108 6 75 6.52e-18 79.0
Msa0476300 MtrunA17_Chr2g0330841 32.051 156 97 4 96 247 26 176 1.76e-16 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476300 AT2G26150.1 51.862 349 124 7 36 379 31 340 2.71e-121 355
Msa0476300 AT2G26150.4 51.862 349 124 7 36 379 31 340 2.71e-121 355
Msa0476300 AT3G22830.1 43.978 357 159 8 36 359 48 396 1.27e-87 271
Msa0476300 AT3G51910.1 55.357 224 79 3 39 256 19 227 6.60e-77 239
Msa0476300 AT4G17750.1 51.570 223 91 2 47 252 50 272 3.73e-76 244
Msa0476300 AT1G32330.1 44.554 303 141 8 15 298 3 297 7.59e-75 240
Msa0476300 AT1G32330.2 44.554 303 141 8 15 298 3 297 8.81e-75 240
Msa0476300 AT5G16820.1 50.655 229 97 3 27 244 10 233 1.27e-74 239
Msa0476300 AT5G16820.2 50.655 229 97 3 27 244 10 233 1.27e-74 239
Msa0476300 AT3G02990.1 44.286 280 140 6 48 318 22 294 1.21e-73 237
Msa0476300 AT5G43840.1 47.863 234 105 3 36 269 6 222 1.99e-69 220
Msa0476300 AT3G63350.1 43.175 315 119 7 25 331 4 266 3.75e-69 219
Msa0476300 AT2G26150.3 44.404 277 108 8 109 379 49 285 4.04e-68 217
Msa0476300 AT2G26150.2 44.404 277 108 8 109 379 49 285 4.04e-68 217
Msa0476300 AT5G03720.2 45.815 227 111 4 17 240 24 241 1.09e-60 201
Msa0476300 AT5G03720.1 45.815 227 111 4 17 240 24 241 1.09e-60 201
Msa0476300 AT1G67970.1 47.872 188 97 1 49 235 19 206 5.93e-56 188
Msa0476300 AT5G54070.1 42.857 217 109 3 42 257 63 265 1.54e-55 186
Msa0476300 AT4G13980.1 40.201 199 114 2 50 247 24 218 4.60e-48 169
Msa0476300 AT3G24520.1 45.411 207 86 5 49 251 17 200 1.57e-47 164
Msa0476300 AT5G45710.3 38.725 204 118 2 48 251 12 208 3.30e-37 137
Msa0476300 AT5G45710.1 38.725 204 118 2 48 251 12 208 3.30e-37 137
Msa0476300 AT4G36990.1 52.632 114 48 1 47 160 12 119 1.58e-36 134
Msa0476300 AT1G46264.1 38.191 199 70 3 39 187 24 219 2.71e-36 135
Msa0476300 AT2G41690.1 48.889 135 52 2 6 140 14 131 5.66e-36 132
Msa0476300 AT4G18880.1 44.000 175 97 1 48 221 14 188 1.26e-35 135
Msa0476300 AT5G62020.1 55.882 102 45 0 47 148 21 122 1.75e-35 132
Msa0476300 AT4G11660.1 58.511 94 39 0 47 140 57 150 2.15e-34 131
Msa0476300 AT4G18870.1 34.711 121 75 1 49 165 146 266 1.42e-20 91.3
Msa0476300 AT4G18870.1 43.678 87 48 1 50 136 14 99 6.88e-18 83.6
Msa0476300 AT1G77570.1 36.667 90 54 2 50 136 27 116 6.72e-13 66.2

Find 180 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCTTTATCCATAAATT+TGG 0.091146 3_3:-80107873 Msa0476300:three_prime_UTR
GAATCAACGCCCCAAATTTA+TGG 0.128034 3_3:+80107862 None:intergenic
TTATCCTGGTCAAAGAAATT+TGG 0.160792 3_3:+80108697 None:intergenic
TTGGATTAAAATATATATTA+AGG 0.180387 3_3:-80108500 Msa0476300:three_prime_UTR
GGTGGTGCTTGTATTGAATT+AGG 0.198844 3_3:-80109959 Msa0476300:CDS
CAGTTTGCTTTCTTTGTTGC+TGG 0.209711 3_3:-80108591 Msa0476300:three_prime_UTR
TGTGATGTGATAATCGATTT+TGG 0.223359 3_3:+80110745 None:intergenic
TGTTGTTTGGTTCAAAATAA+AGG 0.233150 3_3:+80109054 None:intergenic
CTCGTAATAGCTTTGTTGTT+TGG 0.240497 3_3:-80110471 Msa0476300:CDS
TGGTAGAAAATAATGATAAT+TGG 0.250597 3_3:-80109340 Msa0476300:CDS
AAATGGAGCAACTTAATTTA+AGG 0.257017 3_3:+80110864 None:intergenic
AAGTGGTAATGAGAGTAATT+TGG 0.259305 3_3:-80109471 Msa0476300:CDS
TTCAACAACATCAAAGGTTT+TGG 0.271463 3_3:+80110531 None:intergenic
AATGCTTTATCCATAAATTT+GGG 0.272774 3_3:-80107872 Msa0476300:three_prime_UTR
TCAGCCGATTCTGTTCCTTT+TGG 0.275927 3_3:-80108781 Msa0476300:three_prime_UTR
TGCAATCCTTCCATTGGTTT+TGG 0.278910 3_3:+80110580 None:intergenic
GAGACGGGTTAAGAGAAATT+TGG 0.281750 3_3:+80110912 None:intergenic
CCACTGATTCCATTGTTTCA+TGG 0.288131 3_3:-80110501 Msa0476300:CDS
TTGAGTGAATATTAGTGATT+TGG 0.288171 3_3:-80108311 Msa0476300:three_prime_UTR
TCGTAATAGCTTTGTTGTTT+GGG 0.292309 3_3:-80110470 Msa0476300:CDS
TCAATGCTTACAATTGAATA+TGG 0.303918 3_3:-80108413 Msa0476300:three_prime_UTR
CTTGTGTTGGTTCGAATCTC+TGG 0.307706 3_3:+80107761 None:intergenic
AACTCTTCATCTTCCTCTTC+GGG 0.307939 3_3:-80110616 Msa0476300:CDS
TCAATCATCTTGACAACTTT+GGG 0.309794 3_3:+80108921 None:intergenic
CCAATCACAACTTCATCTTC+TGG 0.312679 3_3:+80109398 None:intergenic
TGTATTGAATTAGGGGAGTA+TGG 0.320828 3_3:-80109950 Msa0476300:CDS
TAACTCTTCATCTTCCTCTT+CGG 0.322245 3_3:-80110617 Msa0476300:CDS
GGGATTAGATAGATAGATTA+GGG 0.322408 3_3:+80110834 None:intergenic
TCACTTGAGTTGCACCTTGC+TGG 0.323733 3_3:-80109232 Msa0476300:intron
TATTTAAACACCACACCATC+TGG 0.328747 3_3:+80107925 None:intergenic
AAGATGATTCTGAAGCTATA+AGG 0.331696 3_3:-80109646 Msa0476300:CDS
TTCAATCATCTTGACAACTT+TGG 0.337501 3_3:+80108920 None:intergenic
GGATATGGTGTTCATGGAAT+TGG 0.357483 3_3:-80108544 Msa0476300:three_prime_UTR
CATTGTGAATTGAGTGTTGC+TGG 0.360684 3_3:-80108263 Msa0476300:three_prime_UTR
GCTCACTGCTAGTTCGAGTT+TGG 0.362423 3_3:-80109678 Msa0476300:CDS
TAATCTCGCGGAGGAGGATA+TGG 0.369052 3_3:-80108559 Msa0476300:three_prime_UTR
TTAGCATATGTCAGTGTTGT+TGG 0.370710 3_3:-80110652 Msa0476300:CDS
TGATGTGCCCGTGGAGGATT+TGG 0.372993 3_3:-80109360 Msa0476300:CDS
AGAGAAATTTGGTTTGGTAA+TGG 0.373806 3_3:+80110923 None:intergenic
TGTTGGTGGAATGGTGGATT+TGG 0.375232 3_3:-80108372 Msa0476300:three_prime_UTR
GTGTTCTGTACATTGTTTGC+GGG 0.375546 3_3:-80108651 Msa0476300:three_prime_UTR
GCAGAGCCTTGTTGATCAAA+TGG 0.381911 3_3:-80109306 Msa0476300:CDS
TGGGATTAGATAGATAGATT+AGG 0.385705 3_3:+80110833 None:intergenic
TGAATCAAGCAGTGAAGTTA+AGG 0.388539 3_3:-80109519 Msa0476300:CDS
CTGATGGAGTGATGGTTGTC+AGG 0.392404 3_3:-80108159 Msa0476300:three_prime_UTR
GTTCACAACAATATGTTGTT+TGG 0.395706 3_3:+80109041 None:intergenic
AGTTGGCCTGTATCTTTATA+TGG 0.396126 3_3:-80108133 Msa0476300:three_prime_UTR
TGGTGTTTAAATAGACATAT+TGG 0.397087 3_3:-80107915 Msa0476300:three_prime_UTR
AATGGAAGGATTGCACGAAA+TGG 0.400329 3_3:-80110572 Msa0476300:CDS
AGTGGTAATGAGAGTAATTT+GGG 0.400460 3_3:-80109470 Msa0476300:CDS
GATGATTGAATGGGAAAAGT+TGG 0.400946 3_3:-80108907 Msa0476300:three_prime_UTR
CTCCTATTGTTCCTCGTGCT+TGG 0.402787 3_3:-80108042 Msa0476300:three_prime_UTR
TGGATTAAAATATATATTAA+GGG 0.408953 3_3:-80108499 Msa0476300:three_prime_UTR
GTGGTGCTTGTATTGAATTA+GGG 0.418246 3_3:-80109958 Msa0476300:CDS
TGGCTGAGATTGTGAAGTTA+AGG 0.421096 3_3:-80109880 Msa0476300:CDS
TTCTACAACCAATTTGACTA+AGG 0.426171 3_3:+80109275 None:intergenic
TACAAACTATTCTAAAACTA+GGG 0.426336 3_3:+80107818 None:intergenic
TTACAAACTATTCTAAAACT+AGG 0.427025 3_3:+80107817 None:intergenic
CAGAGCCTTGTTGATCAAAT+GGG 0.427250 3_3:-80109305 Msa0476300:CDS
TAGATTAGGGAAGAGTGAAA+TGG 0.439868 3_3:+80110847 None:intergenic
TCTTGAGAGCATATATATGA+AGG 0.444253 3_3:-80108467 Msa0476300:three_prime_UTR
GCATATATATGAAGGGTTGA+AGG 0.448803 3_3:-80108459 Msa0476300:three_prime_UTR
CTCTTGTAAACGGGGCCTGA+TGG 0.452618 3_3:-80108175 Msa0476300:three_prime_UTR
TTAGGGGAGTATGGTCTTGA+AGG 0.455498 3_3:-80109941 Msa0476300:CDS
AGATGATTCTGAAGCTATAA+GGG 0.457075 3_3:-80109645 Msa0476300:CDS
AGCCAAGCACGAGGAACAAT+AGG 0.457798 3_3:+80108040 None:intergenic
ATGATTGAATGGGAAAAGTT+GGG 0.459488 3_3:-80108906 Msa0476300:three_prime_UTR
GAAGGGAATTAGAGTGAAAG+AGG 0.460183 3_3:-80110683 Msa0476300:CDS
CATTGTTTGCGGGTCAGTCT+AGG 0.464404 3_3:-80108641 Msa0476300:three_prime_UTR
GTGAGATTGAGAGGTTGAGA+AGG 0.465030 3_3:-80109919 Msa0476300:CDS
GATTCCCACCAACCAACTCT+TGG 0.469023 3_3:+80109420 None:intergenic
GGAGGAGGATATGGTGTTCA+TGG 0.471635 3_3:-80108550 Msa0476300:three_prime_UTR
ATGGAAGGATTGCACGAAAT+GGG 0.473051 3_3:-80110571 Msa0476300:CDS
GGTTCGAATCTCTGGTGTTA+CGG 0.475248 3_3:+80107769 None:intergenic
TAATCACCATATAAAGATAC+AGG 0.475577 3_3:+80108127 None:intergenic
CACGAGGAACAATAGGAGTA+TGG 0.476046 3_3:+80108047 None:intergenic
TGAATGGCTTTGTATGCAGC+AGG 0.477650 3_3:-80109114 Msa0476300:three_prime_UTR
CAAGCTATGCAGCAAGAGAC+TGG 0.480304 3_3:-80109980 Msa0476300:CDS
TAATCAACCACAGACTCAAT+TGG 0.480632 3_3:+80109617 None:intergenic
ATTCGTAATTCGTATCACTT+TGG 0.481209 3_3:-80107963 Msa0476300:three_prime_UTR
ATTTCGTGCAATCCTTCCAT+TGG 0.481224 3_3:+80110574 None:intergenic
CATTAGGATAGAATAAGAAA+TGG 0.486421 3_3:+80108970 None:intergenic
GCGTTGAAATGAAGCGAAAA+CGG 0.487154 3_3:-80109703 Msa0476300:CDS
GGGTTAAGAGAAATTTGGTT+TGG 0.488562 3_3:+80110917 None:intergenic
GGAAAGTTGGTAAGTATGAA+AGG 0.490210 3_3:+80110779 None:intergenic
AGCAACTTAATTTAAGGCGG+TGG 0.494578 3_3:+80110870 None:intergenic
TGAGATTGAGAGGTTGAGAA+GGG 0.495911 3_3:-80109918 Msa0476300:CDS
AAGGGAGCAATTATCTGCTA+TGG 0.496135 3_3:-80109840 Msa0476300:CDS
TGATGGTTGTCAGGTGGAGT+TGG 0.497598 3_3:-80108150 Msa0476300:three_prime_UTR
ATGATGTGTTGCTAGCAATT+CGG 0.498371 3_3:+80108856 None:intergenic
TTGTTCCTCGTGCTTGGCTG+TGG 0.498392 3_3:-80108036 Msa0476300:three_prime_UTR
GGCAGCAGCAGCATAATTCA+AGG 0.500409 3_3:-80109859 Msa0476300:CDS
CGATGGGAGTTTGCGAACGA+AGG 0.501252 3_3:-80110067 Msa0476300:CDS
AGCATCAACTAACTCAATGA+AGG 0.501749 3_3:-80110701 Msa0476300:exon
TTGAGAGGTTGAGAAGGGAC+AGG 0.504469 3_3:-80109913 Msa0476300:CDS
CTAGCAACACATCATTCGTT+AGG 0.508340 3_3:-80108848 Msa0476300:three_prime_UTR
GGATCCAAATTTCTTTGACC+AGG 0.509136 3_3:-80108701 Msa0476300:three_prime_UTR
TTCGCAAACTCCCATCGATC+CGG 0.510214 3_3:+80110073 None:intergenic
AGGGTCTCATTGTTGTGTGT+TGG 0.513874 3_3:-80108205 Msa0476300:three_prime_UTR
AAGTTGTCAAGATGATTGAA+TGG 0.521031 3_3:-80108917 Msa0476300:three_prime_UTR
CTGACAACCATCACTCCATC+AGG 0.521916 3_3:+80108160 None:intergenic
AATTATCTGCTATGGAAGCT+AGG 0.522811 3_3:-80109832 Msa0476300:CDS
CAGAGATGACAGTTCCCAAA+AGG 0.524119 3_3:+80108766 None:intergenic
CATATATATGAAGGGTTGAA+GGG 0.524858 3_3:-80108458 Msa0476300:three_prime_UTR
AGTAGGAAGGTTCTAGAGAC+GGG 0.526010 3_3:+80110897 None:intergenic
GAGTAGGAAGGTTCTAGAGA+CGG 0.527317 3_3:+80110896 None:intergenic
AGTTGTCAAGATGATTGAAT+GGG 0.528119 3_3:-80108916 Msa0476300:three_prime_UTR
TTTAAGGCGGTGGATAGAGT+AGG 0.530038 3_3:+80110880 None:intergenic
CCAGAAGATGAAGTTGTGAT+TGG 0.531597 3_3:-80109398 Msa0476300:CDS
GACTACTATTGAGTCTGAGA+TGG 0.532873 3_3:-80109567 Msa0476300:CDS
TTACTGCCATCTTGCCCAGA+TGG 0.534215 3_3:-80107940 Msa0476300:three_prime_UTR
CTTGAGAGCATATATATGAA+GGG 0.534563 3_3:-80108466 Msa0476300:three_prime_UTR
CTGAACCAAGAGTTGGTTGG+TGG 0.536158 3_3:-80109425 Msa0476300:CDS
ACCACACCATCTGGGCAAGA+TGG 0.536159 3_3:+80107934 None:intergenic
AAAAGTTGATCCGGATCGAT+GGG 0.538609 3_3:-80110083 Msa0476300:CDS
CACTGGTGATTGTATATACG+TGG 0.538875 3_3:-80108093 Msa0476300:three_prime_UTR
GAAAAGTTGATCCGGATCGA+TGG 0.539674 3_3:-80110084 Msa0476300:CDS
GATGGGAGTTTGCGAACGAA+GGG 0.539714 3_3:-80110066 Msa0476300:CDS
AATAAAGGATACACATGTGA+TGG 0.541183 3_3:+80109069 None:intergenic
GTTCCCAAAAGGAACAGAAT+CGG 0.541652 3_3:+80108777 None:intergenic
GGATAGAATAAGAAATGGTA+TGG 0.543377 3_3:+80108975 None:intergenic
GGATTTACTGAACCAAGAGT+TGG 0.543897 3_3:-80109432 Msa0476300:CDS
CTAAAGATCAGAATTTATCC+TGG 0.545378 3_3:+80108683 None:intergenic
TTTGGGTGATGCTGTGTGGG+AGG 0.547697 3_3:-80109453 Msa0476300:CDS
ATATGGTGATTAACTTCAAG+AGG 0.551845 3_3:-80108116 Msa0476300:three_prime_UTR
TGTGTTCTGTACATTGTTTG+CGG 0.552368 3_3:-80108652 Msa0476300:three_prime_UTR
TGATTAACTTCAAGAGGCAC+TGG 0.556625 3_3:-80108110 Msa0476300:three_prime_UTR
TAATTTGGGTGATGCTGTGT+GGG 0.557732 3_3:-80109456 Msa0476300:CDS
TGGATCTTCAACAACATCAA+AGG 0.559140 3_3:+80110525 None:intergenic
GAATTGTAAATCGAATAGCT+TGG 0.564977 3_3:-80108519 Msa0476300:three_prime_UTR
AAATTACTCTCATTACCACT+TGG 0.571022 3_3:+80109473 None:intergenic
AAATCTTACACCAAAACCAA+TGG 0.575232 3_3:-80110590 Msa0476300:CDS
GTCTTGAAGGTGAGATTGAG+AGG 0.580331 3_3:-80109928 Msa0476300:CDS
GGAAGATTGTACTGCAGAAG+AGG 0.582683 3_3:-80109092 Msa0476300:three_prime_UTR
ATGCTTTATCCATAAATTTG+GGG 0.583932 3_3:-80107871 Msa0476300:three_prime_UTR
GCCATCTTGCCCAGATGGTG+TGG 0.585845 3_3:-80107935 Msa0476300:three_prime_UTR
TGTGAATTGAGTGTTGCTGG+TGG 0.588769 3_3:-80108260 Msa0476300:three_prime_UTR
CTCTTGTCACGAGCAGCAAG+AGG 0.588881 3_3:-80109594 Msa0476300:CDS
CCATGAAACAATGGAATCAG+TGG 0.596228 3_3:+80110501 None:intergenic
TATGGATAAAGCATTGTCAA+CGG 0.599610 3_3:+80107880 None:intergenic
GAAACAATGGAATCAGTGGA+TGG 0.602123 3_3:+80110505 None:intergenic
ATTTAAACACCACACCATCT+GGG 0.605166 3_3:+80107926 None:intergenic
CAAAACCCATTTGATCAACA+AGG 0.605749 3_3:+80109300 None:intergenic
TAATTGATGTAGAATATGAA+TGG 0.607697 3_3:-80109130 Msa0476300:intron
GCATCAACTAACTCAATGAA+GGG 0.610881 3_3:-80110700 Msa0476300:exon
CTGGTGATTGTATATACGTG+GGG 0.612769 3_3:-80108091 Msa0476300:three_prime_UTR
TGGTGCTTGTATTGAATTAG+GGG 0.613155 3_3:-80109957 Msa0476300:CDS
TGAGAGGTTGAGAAGGGACA+GGG 0.615785 3_3:-80109912 Msa0476300:CDS
TGAACCAAGAGTTGGTTGGT+GGG 0.615910 3_3:-80109424 Msa0476300:CDS
GATTCCATTGTTTCATGGAG+CGG 0.618876 3_3:-80110496 Msa0476300:CDS
AAATAATGATAATTGGACTG+TGG 0.619002 3_3:-80109333 Msa0476300:CDS
AACCACAGACTCAATTGGCA+CGG 0.620284 3_3:+80109622 None:intergenic
TGTAAGATTTGAACCCGAAG+AGG 0.623342 3_3:+80110603 None:intergenic
GCAGCAGCAGCATAATTCAA+GGG 0.624420 3_3:-80109858 Msa0476300:CDS
GGCCGTGCCAATTGAGTCTG+TGG 0.628717 3_3:-80109624 Msa0476300:CDS
AACGGGGCCTGATGGAGTGA+TGG 0.628748 3_3:-80108167 Msa0476300:three_prime_UTR
TTCTCAAATTGATGTGCCCG+TGG 0.628790 3_3:-80109369 Msa0476300:CDS
CATCAGGCCCCGTTTACAAG+AGG 0.628875 3_3:+80108176 None:intergenic
ATGGAGTGATGGTTGTCAGG+TGG 0.629208 3_3:-80108156 Msa0476300:three_prime_UTR
GTAACGAGGTAAAATAGCAG+TGG 0.630092 3_3:+80110432 None:intergenic
AGCTCCGCTCCATGAAACAA+TGG 0.631104 3_3:+80110492 None:intergenic
CTTACACCAAAACCAATGGA+AGG 0.637289 3_3:-80110586 Msa0476300:CDS
TCAAATTGATGTGCCCGTGG+AGG 0.639975 3_3:-80109366 Msa0476300:CDS
TGGAGCAACTTAATTTAAGG+CGG 0.645189 3_3:+80110867 None:intergenic
TTACTGAACCAAGAGTTGGT+TGG 0.648299 3_3:-80109428 Msa0476300:CDS
TCTTGTCACGAGCAGCAAGA+GGG 0.651954 3_3:-80109593 Msa0476300:CDS
GCACAGAATAGAGAGTTGAA+AGG 0.656703 3_3:-80109725 Msa0476300:CDS
ACTGGTGATTGTATATACGT+GGG 0.658637 3_3:-80108092 Msa0476300:three_prime_UTR
TACTACAAATTACAAAACTG+AGG 0.659342 3_3:+80108227 None:intergenic
TGGTGATTGTATATACGTGG+GGG 0.663825 3_3:-80108090 Msa0476300:three_prime_UTR
AGGCGGTGGATAGAGTAGGA+AGG 0.671667 3_3:+80110884 None:intergenic
GTAATTTGGGTGATGCTGTG+TGG 0.674970 3_3:-80109457 Msa0476300:CDS
TAACAAAGTTCATACCAGCA+AGG 0.675115 3_3:+80109218 None:intergenic
AATAACCACAGCCAAGCACG+AGG 0.677918 3_3:+80108031 None:intergenic
TTGAAATGAAGCGAAAACGG+AGG 0.685238 3_3:-80109700 Msa0476300:CDS
GCATTGAGTTCAGTTCCAAG+TGG 0.687922 3_3:-80109488 Msa0476300:CDS
TTACTGTGTTTGAAGTAACG+AGG 0.690403 3_3:+80110418 None:intergenic
GAATGGCTTTGTATGCAGCA+GGG 0.693731 3_3:-80109113 Msa0476300:three_prime_UTR
GGTGATTGTATATACGTGGG+GGG 0.696287 3_3:-80108089 Msa0476300:three_prime_UTR
GCTATGCAGCAAGAGACTGG+TGG 0.743962 3_3:-80109977 Msa0476300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATATAGTTAAAAACATT+AGG + chr3_3:80109752-80109771 None:intergenic 10.0%
!! TTGGATTAAAATATATATTA+AGG - chr3_3:80110203-80110222 Msa0476300:intron 10.0%
!! TGGATTAAAATATATATTAA+GGG - chr3_3:80110204-80110223 Msa0476300:intron 10.0%
!! TCTTGAAAAAAAAAAAAAAA+AGG + chr3_3:80110702-80110721 None:intergenic 10.0%
!!! TTTGTTATTGTTATTGTTAT+TGG - chr3_3:80109501-80109520 Msa0476300:CDS 15.0%
!!! TGTTTGTTTGTTTTAGTTTT+GGG + chr3_3:80107892-80107911 None:intergenic 20.0%
!!! TTGTTTGTTTGTTTTAGTTT+TGG + chr3_3:80107893-80107912 None:intergenic 20.0%
!!! TCAATCTTTTATACAACAAT+TGG - chr3_3:80108956-80108975 Msa0476300:three_prime_UTR 20.0%
!! TGGTAGAAAATAATGATAAT+TGG - chr3_3:80109363-80109382 Msa0476300:CDS 20.0%
!! TTGATAAATAATTTCTGTGA+TGG - chr3_3:80109550-80109569 Msa0476300:CDS 20.0%
!! TAATTGATGTAGAATATGAA+TGG - chr3_3:80109573-80109592 Msa0476300:CDS 20.0%
!!! TGTTTTTAACTATATTTTGC+AGG - chr3_3:80109754-80109773 Msa0476300:CDS 20.0%
!! AATGCTTTATCCATAAATTT+GGG - chr3_3:80110831-80110850 Msa0476300:five_prime_UTR 20.0%
!!! TACAAACTATTCTAAAACTA+GGG + chr3_3:80110888-80110907 None:intergenic 20.0%
!!! TTACAAACTATTCTAAAACT+AGG + chr3_3:80110889-80110908 None:intergenic 20.0%
! AAATGGAGCAACTTAATTTA+AGG + chr3_3:80107842-80107861 None:intergenic 25.0%
! AAGTGATAGTTAACTTACAT+AGG + chr3_3:80108340-80108359 None:intergenic 25.0%
! TTGAATGTAATCATATGTGT+CGG + chr3_3:80108474-80108493 None:intergenic 25.0%
!! AATTTTTGTGTTCATATGCA+GGG - chr3_3:80108591-80108610 Msa0476300:three_prime_UTR 25.0%
! AAATAATGATAATTGGACTG+TGG - chr3_3:80109370-80109389 Msa0476300:CDS 25.0%
!! TGTTGTTTGGTTCAAAATAA+AGG + chr3_3:80109652-80109671 None:intergenic 25.0%
! CATTAGGATAGAATAAGAAA+TGG + chr3_3:80109736-80109755 None:intergenic 25.0%
! TCAATGCTTACAATTGAATA+TGG - chr3_3:80110290-80110309 Msa0476300:intron 25.0%
! TTGAGTGAATATTAGTGATT+TGG - chr3_3:80110392-80110411 Msa0476300:CDS 25.0%
! TACTACAAATTACAAAACTG+AGG + chr3_3:80110479-80110498 None:intergenic 25.0%
!!! TCAGTTTTGTAATTTGTAGT+AGG - chr3_3:80110478-80110497 Msa0476300:CDS 25.0%
!!! CAGTTTTGTAATTTGTAGTA+GGG - chr3_3:80110479-80110498 Msa0476300:CDS 25.0%
! TAATCACCATATAAAGATAC+AGG + chr3_3:80110579-80110598 None:intergenic 25.0%
! TGGTGTTTAAATAGACATAT+TGG - chr3_3:80110788-80110807 Msa0476300:five_prime_UTR 25.0%
! CAATGCTTTATCCATAAATT+TGG - chr3_3:80110830-80110849 Msa0476300:five_prime_UTR 25.0%
! ATGCTTTATCCATAAATTTG+GGG - chr3_3:80110832-80110851 Msa0476300:five_prime_UTR 25.0%
!! AGAGAAATTTGGTTTGGTAA+TGG + chr3_3:80107783-80107802 None:intergenic 30.0%
GGGATTAGATAGATAGATTA+GGG + chr3_3:80107872-80107891 None:intergenic 30.0%
TGGGATTAGATAGATAGATT+AGG + chr3_3:80107873-80107892 None:intergenic 30.0%
!!! TCGATTTTGGAGCTTAATTT+TGG + chr3_3:80107948-80107967 None:intergenic 30.0%
!! TGTGATGTGATAATCGATTT+TGG + chr3_3:80107961-80107980 None:intergenic 30.0%
AAATCTTACACCAAAACCAA+TGG - chr3_3:80108113-80108132 Msa0476300:three_prime_UTR 30.0%
! TTCAACAACATCAAAGGTTT+TGG + chr3_3:80108175-80108194 None:intergenic 30.0%
!! TCGTAATAGCTTTGTTGTTT+GGG - chr3_3:80108233-80108252 Msa0476300:three_prime_UTR 30.0%
TATGTCAATGTTGATGTATC+CGG - chr3_3:80108505-80108524 Msa0476300:three_prime_UTR 30.0%
AAGAACAAATTCACAAACAC+CGG + chr3_3:80108527-80108546 None:intergenic 30.0%
! GAATTTTTGTGTTCATATGC+AGG - chr3_3:80108590-80108609 Msa0476300:three_prime_UTR 30.0%
!! AAGATGATTCTGAAGCTATA+AGG - chr3_3:80109057-80109076 Msa0476300:three_prime_UTR 30.0%
!! AGATGATTCTGAAGCTATAA+GGG - chr3_3:80109058-80109077 Msa0476300:three_prime_UTR 30.0%
AAATTACTCTCATTACCACT+TGG + chr3_3:80109233-80109252 None:intergenic 30.0%
! AAGTGGTAATGAGAGTAATT+TGG - chr3_3:80109232-80109251 Msa0476300:intron 30.0%
! AGTGGTAATGAGAGTAATTT+GGG - chr3_3:80109233-80109252 Msa0476300:three_prime_UTR 30.0%
!! GTTTTGAACCTTAGTCAAAT+TGG - chr3_3:80109420-80109439 Msa0476300:CDS 30.0%
TTCTACAACCAATTTGACTA+AGG + chr3_3:80109431-80109450 None:intergenic 30.0%
AATAAAGGATACACATGTGA+TGG + chr3_3:80109637-80109656 None:intergenic 30.0%
GTTCACAACAATATGTTGTT+TGG + chr3_3:80109665-80109684 None:intergenic 30.0%
GGATAGAATAAGAAATGGTA+TGG + chr3_3:80109731-80109750 None:intergenic 30.0%
TCAATCATCTTGACAACTTT+GGG + chr3_3:80109785-80109804 None:intergenic 30.0%
TTCAATCATCTTGACAACTT+TGG + chr3_3:80109786-80109805 None:intergenic 30.0%
AAGTTGTCAAGATGATTGAA+TGG - chr3_3:80109786-80109805 Msa0476300:CDS 30.0%
AGTTGTCAAGATGATTGAAT+GGG - chr3_3:80109787-80109806 Msa0476300:CDS 30.0%
ATGATTGAATGGGAAAAGTT+GGG - chr3_3:80109797-80109816 Msa0476300:CDS 30.0%
TTATCCTGGTCAAAGAAATT+TGG + chr3_3:80110009-80110028 None:intergenic 30.0%
CTAAAGATCAGAATTTATCC+TGG + chr3_3:80110023-80110042 None:intergenic 30.0%
GAATTGTAAATCGAATAGCT+TGG - chr3_3:80110184-80110203 Msa0476300:intron 30.0%
! TCTTGAGAGCATATATATGA+AGG - chr3_3:80110236-80110255 Msa0476300:intron 30.0%
! CTTGAGAGCATATATATGAA+GGG - chr3_3:80110237-80110256 Msa0476300:intron 30.0%
CATATATATGAAGGGTTGAA+GGG - chr3_3:80110245-80110264 Msa0476300:intron 30.0%
ATATGGTGATTAACTTCAAG+AGG - chr3_3:80110587-80110606 Msa0476300:CDS 30.0%
ATTCGTAATTCGTATCACTT+TGG - chr3_3:80110740-80110759 Msa0476300:five_prime_UTR 30.0%
!! TATGGATAAAGCATTGTCAA+CGG + chr3_3:80110826-80110845 None:intergenic 30.0%
GGGTTAAGAGAAATTTGGTT+TGG + chr3_3:80107789-80107808 None:intergenic 35.0%
TGGAGCAACTTAATTTAAGG+CGG + chr3_3:80107839-80107858 None:intergenic 35.0%
TAGATTAGGGAAGAGTGAAA+TGG + chr3_3:80107859-80107878 None:intergenic 35.0%
!! GGAAAGTTGGTAAGTATGAA+AGG + chr3_3:80107927-80107946 None:intergenic 35.0%
!! GGAGCTTAATTTTGGAAAGT+TGG + chr3_3:80107940-80107959 None:intergenic 35.0%
AGCATCAACTAACTCAATGA+AGG - chr3_3:80108002-80108021 Msa0476300:three_prime_UTR 35.0%
GCATCAACTAACTCAATGAA+GGG - chr3_3:80108003-80108022 Msa0476300:three_prime_UTR 35.0%
TTAGCATATGTCAGTGTTGT+TGG - chr3_3:80108051-80108070 Msa0476300:three_prime_UTR 35.0%
TAACTCTTCATCTTCCTCTT+CGG - chr3_3:80108086-80108105 Msa0476300:three_prime_UTR 35.0%
!! TCAAAGGTTTTGGTGAGAAA+TGG + chr3_3:80108165-80108184 None:intergenic 35.0%
TGGATCTTCAACAACATCAA+AGG + chr3_3:80108181-80108200 None:intergenic 35.0%
!! CTCGTAATAGCTTTGTTGTT+TGG - chr3_3:80108232-80108251 Msa0476300:three_prime_UTR 35.0%
! TTACTGTGTTTGAAGTAACG+AGG + chr3_3:80108288-80108307 None:intergenic 35.0%
!!! GGGTTTTAGAAAAGTTGATC+CGG - chr3_3:80108611-80108630 Msa0476300:three_prime_UTR 35.0%
GTGGTGCTTGTATTGAATTA+GGG - chr3_3:80108745-80108764 Msa0476300:three_prime_UTR 35.0%
TGGTGCTTGTATTGAATTAG+GGG - chr3_3:80108746-80108765 Msa0476300:three_prime_UTR 35.0%
TGTATTGAATTAGGGGAGTA+TGG - chr3_3:80108753-80108772 Msa0476300:three_prime_UTR 35.0%
AATTATCTGCTATGGAAGCT+AGG - chr3_3:80108871-80108890 Msa0476300:three_prime_UTR 35.0%
TAATCAACCACAGACTCAAT+TGG + chr3_3:80109089-80109108 None:intergenic 35.0%
TGAATCAAGCAGTGAAGTTA+AGG - chr3_3:80109184-80109203 Msa0476300:intron 35.0%
! ATTTTCTACCAAATCCTCCA+CGG + chr3_3:80109354-80109373 None:intergenic 35.0%
CAAAACCCATTTGATCAACA+AGG + chr3_3:80109406-80109425 None:intergenic 35.0%
TAACAAAGTTCATACCAGCA+AGG + chr3_3:80109488-80109507 None:intergenic 35.0%
GATGATTGAATGGGAAAAGT+TGG - chr3_3:80109796-80109815 Msa0476300:CDS 35.0%
! ATGATGTGTTGCTAGCAATT+CGG + chr3_3:80109850-80109869 None:intergenic 35.0%
!! GGTATCTAGGTTTTGTCAAA+TGG + chr3_3:80109882-80109901 None:intergenic 35.0%
AAACTCAAAAAAACTGTCGC+AGG + chr3_3:80109903-80109922 None:intergenic 35.0%
! CTCTTTTAGACTTGTCAAAG+AGG - chr3_3:80109981-80110000 Msa0476300:CDS 35.0%
TGTGTTCTGTACATTGTTTG+CGG - chr3_3:80110051-80110070 Msa0476300:CDS 35.0%
!! TGGTTGTTTTGTTAATCTCG+CGG - chr3_3:80110132-80110151 Msa0476300:intron 35.0%
GCATATATATGAAGGGTTGA+AGG - chr3_3:80110244-80110263 Msa0476300:intron 35.0%
!!! GAACTGCAGCTTTATTTTTG+AGG - chr3_3:80110414-80110433 Msa0476300:CDS 35.0%
! TGGTGTTTTCCTCTTGTAAA+CGG - chr3_3:80110518-80110537 Msa0476300:CDS 35.0%
! AGTTGGCCTGTATCTTTATA+TGG - chr3_3:80110570-80110589 Msa0476300:CDS 35.0%
ACTGGTGATTGTATATACGT+GGG - chr3_3:80110611-80110630 Msa0476300:CDS 35.0%
ATTTAAACACCACACCATCT+GGG + chr3_3:80110780-80110799 None:intergenic 35.0%
TATTTAAACACCACACCATC+TGG + chr3_3:80110781-80110800 None:intergenic 35.0%
!! GAGACGGGTTAAGAGAAATT+TGG + chr3_3:80107794-80107813 None:intergenic 40.0%
! AGCAACTTAATTTAAGGCGG+TGG + chr3_3:80107836-80107855 None:intergenic 40.0%
GAAGGGAATTAGAGTGAAAG+AGG - chr3_3:80108020-80108039 Msa0476300:three_prime_UTR 40.0%
AACTCTTCATCTTCCTCTTC+GGG - chr3_3:80108087-80108106 Msa0476300:three_prime_UTR 40.0%
TGTAAGATTTGAACCCGAAG+AGG + chr3_3:80108103-80108122 None:intergenic 40.0%
CTTACACCAAAACCAATGGA+AGG - chr3_3:80108117-80108136 Msa0476300:three_prime_UTR 40.0%
!!! TGCAATCCTTCCATTGGTTT+TGG + chr3_3:80108126-80108145 None:intergenic 40.0%
ATTTCGTGCAATCCTTCCAT+TGG + chr3_3:80108132-80108151 None:intergenic 40.0%
AATGGAAGGATTGCACGAAA+TGG - chr3_3:80108131-80108150 Msa0476300:three_prime_UTR 40.0%
ATGGAAGGATTGCACGAAAT+GGG - chr3_3:80108132-80108151 Msa0476300:three_prime_UTR 40.0%
!! AAGGTTTTGGTGAGAAATGG+AGG + chr3_3:80108162-80108181 None:intergenic 40.0%
GAAACAATGGAATCAGTGGA+TGG + chr3_3:80108201-80108220 None:intergenic 40.0%
CCATGAAACAATGGAATCAG+TGG + chr3_3:80108205-80108224 None:intergenic 40.0%
!! CCACTGATTCCATTGTTTCA+TGG - chr3_3:80108202-80108221 Msa0476300:three_prime_UTR 40.0%
GATTCCATTGTTTCATGGAG+CGG - chr3_3:80108207-80108226 Msa0476300:three_prime_UTR 40.0%
GTAACGAGGTAAAATAGCAG+TGG + chr3_3:80108274-80108293 None:intergenic 40.0%
! AAAAGTTGATCCGGATCGAT+GGG - chr3_3:80108620-80108639 Msa0476300:three_prime_UTR 40.0%
GGTGGTGCTTGTATTGAATT+AGG - chr3_3:80108744-80108763 Msa0476300:three_prime_UTR 40.0%
TGAGATTGAGAGGTTGAGAA+GGG - chr3_3:80108785-80108804 Msa0476300:three_prime_UTR 40.0%
TGGCTGAGATTGTGAAGTTA+AGG - chr3_3:80108823-80108842 Msa0476300:three_prime_UTR 40.0%
AAGGGAGCAATTATCTGCTA+TGG - chr3_3:80108863-80108882 Msa0476300:three_prime_UTR 40.0%
GCACAGAATAGAGAGTTGAA+AGG - chr3_3:80108978-80108997 Msa0476300:three_prime_UTR 40.0%
GCGTTGAAATGAAGCGAAAA+CGG - chr3_3:80109000-80109019 Msa0476300:three_prime_UTR 40.0%
TTGAAATGAAGCGAAAACGG+AGG - chr3_3:80109003-80109022 Msa0476300:three_prime_UTR 40.0%
GACTACTATTGAGTCTGAGA+TGG - chr3_3:80109136-80109155 Msa0476300:intron 40.0%
TAATTTGGGTGATGCTGTGT+GGG - chr3_3:80109247-80109266 Msa0476300:three_prime_UTR 40.0%
GGATTTACTGAACCAAGAGT+TGG - chr3_3:80109271-80109290 Msa0476300:three_prime_UTR 40.0%
! TTACTGAACCAAGAGTTGGT+TGG - chr3_3:80109275-80109294 Msa0476300:exon 40.0%
CCAATCACAACTTCATCTTC+TGG + chr3_3:80109308-80109327 None:intergenic 40.0%
CCAGAAGATGAAGTTGTGAT+TGG - chr3_3:80109305-80109324 Msa0476300:CDS 40.0%
! TTTTCTACCAAATCCTCCAC+GGG + chr3_3:80109353-80109372 None:intergenic 40.0%
!! CAGAGCCTTGTTGATCAAAT+GGG - chr3_3:80109398-80109417 Msa0476300:CDS 40.0%
CTAGCAACACATCATTCGTT+AGG - chr3_3:80109855-80109874 Msa0476300:CDS 40.0%
AAAAACTGTCGCAGGTATCT+AGG + chr3_3:80109895-80109914 None:intergenic 40.0%
GTTCCCAAAAGGAACAGAAT+CGG + chr3_3:80109929-80109948 None:intergenic 40.0%
GGATCCAAATTTCTTTGACC+AGG - chr3_3:80110002-80110021 Msa0476300:CDS 40.0%
GTGTTCTGTACATTGTTTGC+GGG - chr3_3:80110052-80110071 Msa0476300:CDS 40.0%
! CAGTTTGCTTTCTTTGTTGC+TGG - chr3_3:80110112-80110131 Msa0476300:intron 40.0%
!! TTGTTTTGTTAATCTCGCGG+AGG - chr3_3:80110135-80110154 Msa0476300:intron 40.0%
GGATATGGTGTTCATGGAAT+TGG - chr3_3:80110159-80110178 Msa0476300:intron 40.0%
!!! CTGCTTTGTTGTTTTGCTGT+TGG - chr3_3:80110314-80110333 Msa0476300:intron 40.0%
!!! CTTTGTTGTTTTGCTGTTGG+TGG - chr3_3:80110317-80110336 Msa0476300:intron 40.0%
!!! TTGTTTTGCTGTTGGTGGAA+TGG - chr3_3:80110322-80110341 Msa0476300:intron 40.0%
!!! CTGCAGCTTTATTTTTGAGG+TGG - chr3_3:80110417-80110436 Msa0476300:CDS 40.0%
! CATTGTGAATTGAGTGTTGC+TGG - chr3_3:80110440-80110459 Msa0476300:CDS 40.0%
! GGTGTTTTCCTCTTGTAAAC+GGG - chr3_3:80110519-80110538 Msa0476300:CDS 40.0%
! GTGTTTTCCTCTTGTAAACG+GGG - chr3_3:80110520-80110539 Msa0476300:CDS 40.0%
! TGATTAACTTCAAGAGGCAC+TGG - chr3_3:80110593-80110612 Msa0476300:CDS 40.0%
CACTGGTGATTGTATATACG+TGG - chr3_3:80110610-80110629 Msa0476300:CDS 40.0%
CTGGTGATTGTATATACGTG+GGG - chr3_3:80110612-80110631 Msa0476300:CDS 40.0%
TGGTGATTGTATATACGTGG+GGG - chr3_3:80110613-80110632 Msa0476300:CDS 40.0%
GAATCAACGCCCCAAATTTA+TGG + chr3_3:80110844-80110863 None:intergenic 40.0%
!! AGTAGGAAGGTTCTAGAGAC+GGG + chr3_3:80107809-80107828 None:intergenic 45.0%
!! GAGTAGGAAGGTTCTAGAGA+CGG + chr3_3:80107810-80107829 None:intergenic 45.0%
! TTTAAGGCGGTGGATAGAGT+AGG + chr3_3:80107826-80107845 None:intergenic 45.0%
!! GTTTTGGTGAGAAATGGAGG+TGG + chr3_3:80108159-80108178 None:intergenic 45.0%
! GAAAAGTTGATCCGGATCGA+TGG - chr3_3:80108619-80108638 Msa0476300:three_prime_UTR 45.0%
!!! CGAACGAAGGGTTTTTAGCT+GGG - chr3_3:80108649-80108668 Msa0476300:three_prime_UTR 45.0%
! TTAGGGGAGTATGGTCTTGA+AGG - chr3_3:80108762-80108781 Msa0476300:three_prime_UTR 45.0%
GTCTTGAAGGTGAGATTGAG+AGG - chr3_3:80108775-80108794 Msa0476300:three_prime_UTR 45.0%
GTGAGATTGAGAGGTTGAGA+AGG - chr3_3:80108784-80108803 Msa0476300:three_prime_UTR 45.0%
!! AAGGGACAGGGCTGTTTTAA+TGG - chr3_3:80108803-80108822 Msa0476300:three_prime_UTR 45.0%
GCAGCAGCAGCATAATTCAA+GGG - chr3_3:80108845-80108864 Msa0476300:three_prime_UTR 45.0%
AACCACAGACTCAATTGGCA+CGG + chr3_3:80109084-80109103 None:intergenic 45.0%
GCATTGAGTTCAGTTCCAAG+TGG - chr3_3:80109215-80109234 Msa0476300:intron 45.0%
GTAATTTGGGTGATGCTGTG+TGG - chr3_3:80109246-80109265 Msa0476300:three_prime_UTR 45.0%
! TGAACCAAGAGTTGGTTGGT+GGG - chr3_3:80109279-80109298 Msa0476300:exon 45.0%
TTCTCAAATTGATGTGCCCG+TGG - chr3_3:80109334-80109353 Msa0476300:CDS 45.0%
!! GCAGAGCCTTGTTGATCAAA+TGG - chr3_3:80109397-80109416 Msa0476300:CDS 45.0%
!! TGAATGGCTTTGTATGCAGC+AGG - chr3_3:80109589-80109608 Msa0476300:CDS 45.0%
!! GAATGGCTTTGTATGCAGCA+GGG - chr3_3:80109590-80109609 Msa0476300:CDS 45.0%
GGAAGATTGTACTGCAGAAG+AGG - chr3_3:80109611-80109630 Msa0476300:CDS 45.0%
!! TCAGCCGATTCTGTTCCTTT+TGG - chr3_3:80109922-80109941 Msa0476300:CDS 45.0%
!! CAGCCGATTCTGTTCCTTTT+GGG - chr3_3:80109923-80109942 Msa0476300:CDS 45.0%
CAGAGATGACAGTTCCCAAA+AGG + chr3_3:80109940-80109959 None:intergenic 45.0%
!! CTTTTGGGAACTGTCATCTC+TGG - chr3_3:80109938-80109957 Msa0476300:CDS 45.0%
! TTTTGTTAATCTCGCGGAGG+AGG - chr3_3:80110138-80110157 Msa0476300:intron 45.0%
!!! TTTTGCTGTTGGTGGAATGG+TGG - chr3_3:80110325-80110344 Msa0476300:intron 45.0%
!! TGTTGGTGGAATGGTGGATT+TGG - chr3_3:80110331-80110350 Msa0476300:intron 45.0%
! TGTGAATTGAGTGTTGCTGG+TGG - chr3_3:80110443-80110462 Msa0476300:CDS 45.0%
AGGGTCTCATTGTTGTGTGT+TGG - chr3_3:80110498-80110517 Msa0476300:CDS 45.0%
GGTGATTGTATATACGTGGG+GGG - chr3_3:80110614-80110633 Msa0476300:CDS 45.0%
CACGAGGAACAATAGGAGTA+TGG + chr3_3:80110659-80110678 None:intergenic 45.0%
AGCTCCGCTCCATGAAACAA+TGG + chr3_3:80108214-80108233 None:intergenic 50.0%
TTCGCAAACTCCCATCGATC+CGG + chr3_3:80108633-80108652 None:intergenic 50.0%
GATGGGAGTTTGCGAACGAA+GGG - chr3_3:80108637-80108656 Msa0476300:three_prime_UTR 50.0%
!!! GCGAACGAAGGGTTTTTAGC+TGG - chr3_3:80108648-80108667 Msa0476300:three_prime_UTR 50.0%
!!! AAGGGTTTTTAGCTGGGCAG+AGG - chr3_3:80108655-80108674 Msa0476300:three_prime_UTR 50.0%
CAAGCTATGCAGCAAGAGAC+TGG - chr3_3:80108723-80108742 Msa0476300:three_prime_UTR 50.0%
TTGAGAGGTTGAGAAGGGAC+AGG - chr3_3:80108790-80108809 Msa0476300:three_prime_UTR 50.0%
TGAGAGGTTGAGAAGGGACA+GGG - chr3_3:80108791-80108810 Msa0476300:three_prime_UTR 50.0%
GGCAGCAGCAGCATAATTCA+AGG - chr3_3:80108844-80108863 Msa0476300:three_prime_UTR 50.0%
! GCTCACTGCTAGTTCGAGTT+TGG - chr3_3:80109025-80109044 Msa0476300:three_prime_UTR 50.0%
TCTTGTCACGAGCAGCAAGA+GGG - chr3_3:80109110-80109129 Msa0476300:three_prime_UTR 50.0%
! CTGAACCAAGAGTTGGTTGG+TGG - chr3_3:80109278-80109297 Msa0476300:exon 50.0%
GATTCCCACCAACCAACTCT+TGG + chr3_3:80109286-80109305 None:intergenic 50.0%
TCAAATTGATGTGCCCGTGG+AGG - chr3_3:80109337-80109356 Msa0476300:CDS 50.0%
! TCACTTGAGTTGCACCTTGC+TGG - chr3_3:80109471-80109490 Msa0476300:CDS 50.0%
CATTGTTTGCGGGTCAGTCT+AGG - chr3_3:80110062-80110081 Msa0476300:CDS 50.0%
TAATCTCGCGGAGGAGGATA+TGG - chr3_3:80110144-80110163 Msa0476300:intron 50.0%
GGAGGAGGATATGGTGTTCA+TGG - chr3_3:80110153-80110172 Msa0476300:intron 50.0%
CTGACAACCATCACTCCATC+AGG + chr3_3:80110546-80110565 None:intergenic 50.0%
CTGATGGAGTGATGGTTGTC+AGG - chr3_3:80110544-80110563 Msa0476300:CDS 50.0%
ATGGAGTGATGGTTGTCAGG+TGG - chr3_3:80110547-80110566 Msa0476300:CDS 50.0%
TGATGGTTGTCAGGTGGAGT+TGG - chr3_3:80110553-80110572 Msa0476300:CDS 50.0%
CTCCTATTGTTCCTCGTGCT+TGG - chr3_3:80110661-80110680 Msa0476300:CDS 50.0%
AGCCAAGCACGAGGAACAAT+AGG + chr3_3:80110666-80110685 None:intergenic 50.0%
AATAACCACAGCCAAGCACG+AGG + chr3_3:80110675-80110694 None:intergenic 50.0%
TTACTGCCATCTTGCCCAGA+TGG - chr3_3:80110763-80110782 Msa0476300:five_prime_UTR 50.0%
AGGCGGTGGATAGAGTAGGA+AGG + chr3_3:80107822-80107841 None:intergenic 55.0%
CGATGGGAGTTTGCGAACGA+AGG - chr3_3:80108636-80108655 Msa0476300:three_prime_UTR 55.0%
GCTATGCAGCAAGAGACTGG+TGG - chr3_3:80108726-80108745 Msa0476300:three_prime_UTR 55.0%
CTCTTGTCACGAGCAGCAAG+AGG - chr3_3:80109109-80109128 Msa0476300:three_prime_UTR 55.0%
TTTGGGTGATGCTGTGTGGG+AGG - chr3_3:80109250-80109269 Msa0476300:three_prime_UTR 55.0%
TGATGTGCCCGTGGAGGATT+TGG - chr3_3:80109343-80109362 Msa0476300:CDS 55.0%
CATCAGGCCCCGTTTACAAG+AGG + chr3_3:80110530-80110549 None:intergenic 55.0%
CTCTTGTAAACGGGGCCTGA+TGG - chr3_3:80110528-80110547 Msa0476300:CDS 55.0%
TTGTTCCTCGTGCTTGGCTG+TGG - chr3_3:80110667-80110686 Msa0476300:CDS 55.0%
ACCACACCATCTGGGCAAGA+TGG + chr3_3:80110772-80110791 None:intergenic 55.0%
GGCCGTGCCAATTGAGTCTG+TGG - chr3_3:80109079-80109098 Msa0476300:three_prime_UTR 60.0%
AACGGGGCCTGATGGAGTGA+TGG - chr3_3:80110536-80110555 Msa0476300:CDS 60.0%
GCCATCTTGCCCAGATGGTG+TGG - chr3_3:80110768-80110787 Msa0476300:five_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80107770 80110955 80107770 ID=Msa0476300;Name=Msa0476300
chr3_3 mRNA 80107770 80110955 80107770 ID=Msa0476300-mRNA-1;Parent=Msa0476300;Name=Msa0476300-mRNA-1;_AED=0.02;_eAED=0.02;_QI=248|1|1|1|0.5|0.33|3|1430|381
chr3_3 exon 80107770 80109140 80107770 ID=Msa0476300-mRNA-1:exon:21851;Parent=Msa0476300-mRNA-1
chr3_3 exon 80109233 80110113 80109233 ID=Msa0476300-mRNA-1:exon:21850;Parent=Msa0476300-mRNA-1
chr3_3 exon 80110384 80110955 80110384 ID=Msa0476300-mRNA-1:exon:21849;Parent=Msa0476300-mRNA-1
chr3_3 five_prime_UTR 80110708 80110955 80110708 ID=Msa0476300-mRNA-1:five_prime_utr;Parent=Msa0476300-mRNA-1
chr3_3 CDS 80110384 80110707 80110384 ID=Msa0476300-mRNA-1:cds;Parent=Msa0476300-mRNA-1
chr3_3 CDS 80109292 80110113 80109292 ID=Msa0476300-mRNA-1:cds;Parent=Msa0476300-mRNA-1
chr3_3 three_prime_UTR 80109233 80109291 80109233 ID=Msa0476300-mRNA-1:three_prime_utr;Parent=Msa0476300-mRNA-1
chr3_3 three_prime_UTR 80107770 80109140 80107770 ID=Msa0476300-mRNA-1:three_prime_utr;Parent=Msa0476300-mRNA-1
Gene Sequence

>Msa0476300

ATGAAGGGAATTAGAGTGAAAGAGGAAGAAACATTAGCATATGTCAGTGTTGTTGGTTCAACATCATGTAACTCTTCATCTTCCTCTTCGGGTTCAAATCTTACACCAAAACCAATGGAAGGATTGCACGAAATGGGTCCACCTCCATTTCTCACCAAAACCTTTGATGTTGTTGAAGATCCATCCACTGATTCCATTGTTTCATGGAGCGGAGCTCGTAATAGCTTTGTTGTTTGGGATCTTCACAAATTCTCCACTGCTATTTTACCTCGTTACTTCAAACACAGTAATTTCTCTAGCTTCGTTCGACAACTCAATACCTATGGTTTTAGAAAAGTTGATCCGGATCGATGGGAGTTTGCGAACGAAGGGTTTTTAGCTGGGCAGAGGAACTTGTTGAAAACAATCAAGAGAAGAAGAAATGTGACACAATCACAAGCTATGCAGCAAGAGACTGGTGGTGCTTGTATTGAATTAGGGGAGTATGGTCTTGAAGGTGAGATTGAGAGGTTGAGAAGGGACAGGGCTGTTTTAATGGCTGAGATTGTGAAGTTAAGGCAGCAGCAGCATAATTCAAGGGAGCAATTATCTGCTATGGAAGCTAGGTTGTTGATTACTGAGAAGAAACATCAACAGATGATGAATTTTCTTGCAAAAGCACTTAGCAATCAATCTTTTATACAACAATTGGCACAGAATAGAGAGTTGAAAGGCGTTGAAATGAAGCGAAAACGGAGGCTCACTGCTAGTTCGAGTTTGGAGAATTTGCAAGATGATTCTGAAGCTATAAGGGCCGTGCCAATTGAGTCTGTGGTTGATTACTCTTGTCACGAGCAGCAAGAGGGTTTGACTACTATTGAGTCTGAGATGGAGACACTGTTAAGTGCTTATGATAATGAATCAAGCAGTGAAGTTAAGGACTACAGTGCATTGAGTTCAGTTCCAAGTGGTAATGAGAGTAATTTGGGTGATGCTGTGTGGGAGGATTTACTGAACCAAGAGTTGGTTGGTGGGAATCCAGAAGATGAAGTTGTGATTGGTGATTTTTCTCAAATTGATGTGCCCGTGGAGGATTTGGTAGAAAATAATGATAATTGGACTGTGGATTTGCAGAGCCTTGTTGATCAAATGGGTTTTGAACCTTAG
Protein sequence

>Msa0476300

MKGIRVKEEETLAYVSVVGSTSCNSSSSSSGSNLTPKPMEGLHEMGPPPFLTKTFDVVEDPSTDSIVSWSGARNSFVVWDLHKFSTAILPRYFKHSNFSSFVRQLNTYGFRKVDPDRWEFANEGFLAGQRNLLKTIKRRRNVTQSQAMQQETGGACIELGEYGLEGEIERLRRDRAVLMAEIVKLRQQQHNSREQLSAMEARLLITEKKHQQMMNFLAKALSNQSFIQQLAQNRELKGVEMKRKRRLTASSSLENLQDDSEAIRAVPIESVVDYSCHEQQEGLTTIESEMETLLSAYDNESSSEVKDYSALSSVPSGNESNLGDAVWEDLLNQELVGGNPEDEVVIGDFSQIDVPVEDLVENNDNWTVDLQSLVDQMGFEP*