Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381770 | XP_003610462.1 | 86.826 | 334 | 17 | 3 | 43 | 349 | 130 | 463 | 0.0 | 577 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381770 | sp|O65390|APA1_ARATH | 67.692 | 325 | 85 | 2 | 49 | 353 | 129 | 453 | 4.34e-161 | 464 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381770 | G7JJA2 | 86.826 | 334 | 17 | 3 | 43 | 349 | 130 | 463 | 0.0 | 577 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045770 | Msa0381770 | 0.889551 | 2.188673e-73 | -8.615850e-47 |
| Msa0046140 | Msa0381770 | 0.870374 | 1.531829e-66 | -8.615850e-47 |
| Msa0381770 | Msa0484780 | 0.810295 | 1.237580e-50 | -8.615850e-47 |
| Msa0381770 | Msa0623150 | 0.893475 | 6.072604e-75 | -8.615850e-47 |
| Msa0381770 | Msa0880970 | 0.892777 | 1.160913e-74 | -8.615850e-47 |
| Msa0381770 | Msa1399480 | 0.883999 | 2.787791e-71 | -8.615850e-47 |
| Msa0381770 | Msa1409730 | 0.891230 | 4.801903e-74 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381770 | MtrunA17_Chr4g0075181 | 86.826 | 334 | 17 | 3 | 43 | 349 | 130 | 463 | 0.0 | 577 |
| Msa0381770 | MtrunA17_Chr2g0288851 | 67.901 | 324 | 83 | 3 | 50 | 353 | 135 | 457 | 4.51e-155 | 446 |
| Msa0381770 | MtrunA17_Chr1g0193211 | 52.679 | 336 | 137 | 4 | 38 | 353 | 122 | 455 | 9.89e-117 | 348 |
| Msa0381770 | MtrunA17_Chr7g0271351 | 52.681 | 317 | 129 | 3 | 57 | 353 | 136 | 451 | 4.56e-113 | 338 |
| Msa0381770 | MtrunA17_Chr4g0069631 | 44.083 | 338 | 168 | 3 | 38 | 355 | 110 | 446 | 1.48e-103 | 314 |
| Msa0381770 | MtrunA17_Chr2g0302421 | 43.787 | 338 | 164 | 3 | 39 | 356 | 118 | 449 | 5.98e-97 | 297 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0381770 | AT1G11910.1 | 67.692 | 325 | 85 | 2 | 49 | 353 | 129 | 453 | 4.41e-162 | 464 |
| Msa0381770 | AT1G11910.2 | 67.692 | 325 | 85 | 2 | 49 | 353 | 140 | 464 | 6.64e-162 | 464 |
| Msa0381770 | AT1G62290.6 | 65.732 | 321 | 90 | 2 | 49 | 349 | 136 | 456 | 1.08e-157 | 451 |
| Msa0381770 | AT1G62290.4 | 65.732 | 321 | 90 | 2 | 49 | 349 | 136 | 456 | 1.08e-157 | 451 |
| Msa0381770 | AT1G62290.5 | 65.231 | 325 | 93 | 2 | 49 | 353 | 136 | 460 | 1.84e-157 | 451 |
| Msa0381770 | AT1G62290.1 | 65.231 | 325 | 93 | 2 | 49 | 353 | 136 | 460 | 5.38e-157 | 451 |
| Msa0381770 | AT1G62290.2 | 65.231 | 325 | 93 | 2 | 49 | 353 | 136 | 460 | 5.38e-157 | 451 |
| Msa0381770 | AT4G04460.1 | 60.748 | 321 | 103 | 3 | 49 | 349 | 134 | 451 | 1.20e-142 | 414 |
| Msa0381770 | AT4G04460.2 | 60.125 | 321 | 101 | 4 | 49 | 349 | 134 | 447 | 9.43e-139 | 404 |
| Msa0381770 | AT1G62290.3 | 65.603 | 282 | 77 | 2 | 49 | 310 | 136 | 417 | 1.53e-134 | 391 |
| Msa0381770 | AT4G22050.1 | 44.521 | 146 | 75 | 5 | 57 | 198 | 100 | 243 | 6.83e-27 | 110 |
| Msa0381770 | AT1G69100.2 | 38.514 | 148 | 83 | 5 | 57 | 197 | 110 | 256 | 1.28e-24 | 103 |
| Msa0381770 | AT1G69100.1 | 38.514 | 148 | 83 | 5 | 57 | 197 | 102 | 248 | 1.68e-24 | 103 |
Find 84 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGTACTGGAGCAATTTC+TGG | 0.182146 | 3_1:+84096957 | Msa0381770:CDS |
| AAGAAGATCTGTTCCGAAAT+TGG | 0.186128 | 3_1:+84098266 | Msa0381770:CDS |
| GAAGCAGTTGAGGCTTATTT+TGG | 0.193569 | 3_1:+84099145 | Msa0381770:CDS |
| TGATTTGGTGGACCTGTATT+TGG | 0.271444 | 3_1:-84096480 | None:intergenic |
| ATTTCGGAACAGATCTTCTT+TGG | 0.285471 | 3_1:-84098263 | None:intergenic |
| CTTCCTCTTCCTCTGGTTTA+CGG | 0.290155 | 3_1:-84097523 | None:intergenic |
| CCACGCAGTTCTTGCACTTC+AGG | 0.291795 | 3_1:+84099123 | Msa0381770:CDS |
| ATCAAACTTGGCCACCAAAA+AGG | 0.312300 | 3_1:-84097172 | None:intergenic |
| GGCCAAGTTTGATGGTATAT+TGG | 0.314506 | 3_1:+84097182 | Msa0381770:CDS |
| TACCGAAGTGCGACGGTTCC+AGG | 0.319747 | 3_1:-84096310 | None:intergenic |
| CTAACTCACATTATTGATAT+AGG | 0.336786 | 3_1:-84098587 | None:intergenic |
| CCTGTAATTTCCTTCACAAT+TGG | 0.350996 | 3_1:+84098745 | Msa0381770:CDS |
| GCCAAGTTTGATGGTATATT+GGG | 0.353483 | 3_1:+84097183 | Msa0381770:CDS |
| AAAAGTGCATAATCCAATTT+CGG | 0.356449 | 3_1:-84098279 | None:intergenic |
| CTTGTGAGATGGCAGTTGTT+TGG | 0.366615 | 3_1:+84098518 | Msa0381770:CDS |
| GTGCAAGAACTGCGTGGCTC+TGG | 0.374979 | 3_1:-84099117 | None:intergenic |
| TGAGGACGTCATACCTCCTC+TGG | 0.379164 | 3_1:-84098790 | None:intergenic |
| TATAGGTTAGTATCTGATCT+TGG | 0.384235 | 3_1:-84098570 | None:intergenic |
| TGCGTGTCACAGGTATAATA+TGG | 0.389058 | 3_1:+84097454 | Msa0381770:intron |
| CCAATTGTGAAGGAAATTAC+AGG | 0.391923 | 3_1:-84098745 | None:intergenic |
| AAGACCATTGTTGCGGAGTA+TGG | 0.392734 | 3_1:+84098073 | Msa0381770:CDS |
| GGGTCTTATTCTGCCTCAGC+TGG | 0.397243 | 3_1:-84098549 | None:intergenic |
| AAAATGAAAATACTGGTTCC+TGG | 0.404675 | 3_1:-84097493 | None:intergenic |
| ACCATGATAAATCATGCAAT+TGG | 0.417431 | 3_1:+84098022 | Msa0381770:CDS |
| AATGCTGCTGCAATTCAATA+TGG | 0.425708 | 3_1:+84096939 | Msa0381770:CDS |
| AATCATGCAATTGGAGCATC+AGG | 0.427555 | 3_1:+84098031 | Msa0381770:CDS |
| ACTATTGATGGTAAATCAAC+TGG | 0.428669 | 3_1:+84097748 | Msa0381770:CDS |
| TTGAGCCAAAATGAAAATAC+TGG | 0.442611 | 3_1:-84097500 | None:intergenic |
| GGAGTTTATTGAAGCAACTA+AGG | 0.448431 | 3_1:+84097137 | Msa0381770:intron |
| GATAAAATGCCTAGCCCAAT+GGG | 0.448737 | 3_1:+84098685 | Msa0381770:CDS |
| GTAATTTCCTTCACAATTGG+TGG | 0.451679 | 3_1:+84098748 | Msa0381770:CDS |
| TATGTGCCTGTGACAAGAAA+AGG | 0.458750 | 3_1:+84097602 | Msa0381770:CDS |
| TCCAATTGCATGATTTATCA+TGG | 0.459327 | 3_1:-84098023 | None:intergenic |
| AGGAAATCTGCTCCTACTAC+TGG | 0.467062 | 3_1:+84096259 | Msa0381770:CDS |
| TTTGATGGTATATTGGGACT+TGG | 0.470072 | 3_1:+84097189 | Msa0381770:CDS |
| ATAGGTTAGTATCTGATCTT+GGG | 0.472284 | 3_1:-84098569 | None:intergenic |
| GCTACTTCCATGCCAAATAC+AGG | 0.478041 | 3_1:+84096468 | Msa0381770:CDS |
| TGATTTCCCTTGTAGTGAGC+AGG | 0.478891 | 3_1:-84097575 | None:intergenic |
| TGCACTTCAGGAAGCAGTTG+AGG | 0.488684 | 3_1:+84099135 | Msa0381770:CDS |
| TTCTTGTTCTGCTTGTGAGA+TGG | 0.488794 | 3_1:+84098507 | Msa0381770:CDS |
| CTGTGACAAGAAAAGGATAT+TGG | 0.491953 | 3_1:+84097609 | Msa0381770:CDS |
| ATGGGAGATGTAACTATTGA+TGG | 0.494179 | 3_1:+84097736 | Msa0381770:CDS |
| TCAACAGATGATTCTCCCAT+TGG | 0.495110 | 3_1:-84098700 | None:intergenic |
| TAGCTATGACAATGTTAAAG+TGG | 0.497969 | 3_1:+84096986 | Msa0381770:CDS |
| GCTGCAATTCAATATGGTAC+TGG | 0.502280 | 3_1:+84096945 | Msa0381770:CDS |
| AAACCTCACTGTTACCGTCC+TGG | 0.505920 | 3_1:+84096292 | Msa0381770:CDS |
| TGTTGATCCTGCTCACTACA+AGG | 0.512958 | 3_1:+84097568 | Msa0381770:CDS |
| AAATCATCTAGTGGTCTTCA+CGG | 0.514187 | 3_1:+84098481 | Msa0381770:CDS |
| GGATTTCAAGAGATATCAGT+TGG | 0.516373 | 3_1:+84097210 | Msa0381770:CDS |
| TCCCAATATACCATCAAACT+TGG | 0.523032 | 3_1:-84097184 | None:intergenic |
| CAACAGATGATTCTCCCATT+GGG | 0.523189 | 3_1:-84098699 | None:intergenic |
| GATGATTCTCCCATTGGGCT+AGG | 0.532294 | 3_1:-84098694 | None:intergenic |
| TGATAAAATGCCTAGCCCAA+TGG | 0.546047 | 3_1:+84098684 | Msa0381770:CDS |
| CAACCGTAAACCAGAGGAAG+AGG | 0.546465 | 3_1:+84097520 | Msa0381770:CDS |
| GTCATACCTCCTCTGGGGCA+AGG | 0.549507 | 3_1:-84098783 | None:intergenic |
| AGCTATGACAATGTTAAAGT+GGG | 0.550679 | 3_1:+84096987 | Msa0381770:CDS |
| GACAAGAAAAGGATATTGGC+AGG | 0.551662 | 3_1:+84097613 | Msa0381770:CDS |
| ATTGAAGCAACTAAGGAGCC+CGG | 0.555369 | 3_1:+84097144 | Msa0381770:CDS |
| TAAACCAGAGGAAGAGGAAG+GGG | 0.556917 | 3_1:+84097526 | Msa0381770:CDS |
| GTCCTGGAACCGTCGCACTT+CGG | 0.565588 | 3_1:+84096308 | Msa0381770:CDS |
| AGTTCTTCCACCAATTGTGA+AGG | 0.568138 | 3_1:-84098755 | None:intergenic |
| GGTTGAACAAGGTCTTATCC+AGG | 0.568523 | 3_1:+84097475 | Msa0381770:CDS |
| CGACATAGTTGTAAAGAACC+AGG | 0.576247 | 3_1:+84097010 | Msa0381770:CDS |
| CGTAAACCAGAGGAAGAGGA+AGG | 0.577422 | 3_1:+84097524 | Msa0381770:CDS |
| GAGGACGTCATACCTCCTCT+GGG | 0.578224 | 3_1:-84098789 | None:intergenic |
| AACTTTCGACCTTGCCCCAG+AGG | 0.585854 | 3_1:+84098774 | Msa0381770:CDS |
| GTGTAGTGGACGAAAATGAA+AGG | 0.599522 | 3_1:+84098458 | Msa0381770:CDS |
| TGGTGGACCTGTATTTGGCA+TGG | 0.600925 | 3_1:-84096475 | None:intergenic |
| ACGAAATTACCGAAGTGCGA+CGG | 0.610470 | 3_1:-84096317 | None:intergenic |
| TTTGGATGCAGAACCAGCTG+AGG | 0.615653 | 3_1:+84098536 | Msa0381770:CDS |
| TTTCGACCTTGCCCCAGAGG+AGG | 0.620864 | 3_1:+84098777 | Msa0381770:CDS |
| AAATCTGCTCCTACTACTGG+AGG | 0.621448 | 3_1:+84096262 | Msa0381770:CDS |
| TTGTCCATACTCCGCAACAA+TGG | 0.630745 | 3_1:-84098077 | None:intergenic |
| GTTGATCCTGCTCACTACAA+GGG | 0.635225 | 3_1:+84097569 | Msa0381770:CDS |
| AATGAAAGGAAATCATCTAG+TGG | 0.646020 | 3_1:+84098472 | Msa0381770:CDS |
| GTAAACCAGAGGAAGAGGAA+GGG | 0.670861 | 3_1:+84097525 | Msa0381770:CDS |
| AGGTATAATATGGTTGAACA+AGG | 0.671510 | 3_1:+84097464 | Msa0381770:intron |
| AAACCAGAGGAAGAGGAAGG+GGG | 0.675176 | 3_1:+84097527 | Msa0381770:CDS |
| TTGGCTCAACCGTAAACCAG+AGG | 0.676669 | 3_1:+84097514 | Msa0381770:CDS |
| CCTGAAGTGCAAGAACTGCG+TGG | 0.678326 | 3_1:-84099123 | None:intergenic |
| GAAGTGCGACGGTTCCAGGA+CGG | 0.701371 | 3_1:-84096306 | None:intergenic |
| AGAGTGCAAGACCATTGTTG+CGG | 0.713066 | 3_1:+84098066 | Msa0381770:CDS |
| GTTCCAGGACGGTAACAGTG+AGG | 0.713376 | 3_1:-84096295 | None:intergenic |
| AGGACGTCATACCTCCTCTG+GGG | 0.744567 | 3_1:-84098788 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATAAATTTTTAACAAAAA+AGG | - | chr3_1:84097410-84097429 | None:intergenic | 10.0% |
| !! | AAGGATATAAAAATATAATT+GGG | - | chr3_1:84098331-84098350 | None:intergenic | 10.0% |
| !! | AAAGGATATAAAAATATAAT+TGG | - | chr3_1:84098332-84098351 | None:intergenic | 10.0% |
| !! | AAAATTATAATTCTTAAGAT+CGG | + | chr3_1:84098894-84098913 | Msa0381770:intron | 10.0% |
| !! | ATGTGTCAAAAAATTAAAAA+GGG | - | chr3_1:84095626-84095645 | None:intergenic | 15.0% |
| !!! | TTTTTAAGAGAGAAAAAATA+GGG | - | chr3_1:84095691-84095710 | None:intergenic | 15.0% |
| !!! | ATTTTGGATTCATAATTTTT+AGG | + | chr3_1:84096380-84096399 | Msa0381770:intron | 15.0% |
| !!! | TTATAGTATAAGATTTTTCT+TGG | + | chr3_1:84096896-84096915 | Msa0381770:intron | 15.0% |
| !!! | GTATGTTTACTTTTAAATTT+TGG | + | chr3_1:84097251-84097270 | Msa0381770:intron | 15.0% |
| !! | AAATAAAAAAGTAGAGAAAA+AGG | - | chr3_1:84097694-84097713 | None:intergenic | 15.0% |
| !!! | TTTATTTTTTCAGTTTGATA+TGG | + | chr3_1:84097717-84097736 | Msa0381770:intron | 15.0% |
| !!! | TTATTTTTTCAGTTTGATAT+GGG | + | chr3_1:84097718-84097737 | Msa0381770:intron | 15.0% |
| !! | TTAAATTTCTAACTGAAAAA+AGG | + | chr3_1:84097933-84097952 | Msa0381770:intron | 15.0% |
| !!! | TTTTCATAGCATAAAATAAT+CGG | - | chr3_1:84098849-84098868 | None:intergenic | 15.0% |
| !! | TGTGTCAAAAAATTAAAAAG+GGG | - | chr3_1:84095625-84095644 | None:intergenic | 20.0% |
| !! | GATGTGTCAAAAAATTAAAA+AGG | - | chr3_1:84095627-84095646 | None:intergenic | 20.0% |
| !!! | TTTTAAGAGAGAAAAAATAG+GGG | - | chr3_1:84095690-84095709 | None:intergenic | 20.0% |
| !!! | GTTTTTAAGAGAGAAAAAAT+AGG | - | chr3_1:84095692-84095711 | None:intergenic | 20.0% |
| !!! | ATAGGAAAATTTGTTTTGAT+TGG | - | chr3_1:84095818-84095837 | None:intergenic | 20.0% |
| !!! | TTTTAGGAATTTTGAATTTG+CGG | + | chr3_1:84096396-84096415 | Msa0381770:intron | 20.0% |
| !!! | AAATGCTTTTACAATTAGTT+TGG | + | chr3_1:84096712-84096731 | Msa0381770:intron | 20.0% |
| !!! | TGACATATTGTAATTTGTTT+TGG | + | chr3_1:84096778-84096797 | Msa0381770:intron | 20.0% |
| !!! | TTCTTATGTTCTTCTATTTT+CGG | + | chr3_1:84096830-84096849 | Msa0381770:intron | 20.0% |
| !! | AAAAAAGATCAATACAAGTA+TGG | - | chr3_1:84097669-84097688 | None:intergenic | 20.0% |
| !!! | TTTTATATCCTTTGAATCTT+TGG | + | chr3_1:84098339-84098358 | Msa0381770:intron | 20.0% |
| !!! | TTTGATATTGTTGTTATAGA+CGG | + | chr3_1:84099084-84099103 | Msa0381770:intron | 20.0% |
| ! | TTTAAGAGAGAAAAAATAGG+GGG | - | chr3_1:84095689-84095708 | None:intergenic | 25.0% |
| !! | TCGTTTTCCTCTAATTTTTT+AGG | + | chr3_1:84096336-84096355 | Msa0381770:intron | 25.0% |
| !!! | CCTCTAATTTTTTAGGTTTT+CGG | + | chr3_1:84096343-84096362 | Msa0381770:intron | 25.0% |
| !!! | GGAGTTTTGAATTTGAATTT+TGG | + | chr3_1:84096364-84096383 | Msa0381770:intron | 25.0% |
| !! | ATTTGCGGTTTATGATTTTT+AGG | + | chr3_1:84096411-84096430 | Msa0381770:intron | 25.0% |
| !!! | GTTTTCGTTGTTGTTAATTT+TGG | + | chr3_1:84096433-84096452 | Msa0381770:intron | 25.0% |
| ! | TTTCCTGTAAGTATTTGATT+TGG | - | chr3_1:84096498-84096517 | None:intergenic | 25.0% |
| ! | TCAAATACTTACAGGAAAAA+TGG | + | chr3_1:84096500-84096519 | Msa0381770:intron | 25.0% |
| !! | TCTTTTATGTCAATAAAGGA+TGG | + | chr3_1:84097051-84097070 | Msa0381770:intron | 25.0% |
| ! | TGTATCTTTCATAGTATGTT+CGG | + | chr3_1:84097082-84097101 | Msa0381770:intron | 25.0% |
| ! | ATAAACTCCTGATAGTAAAA+AGG | - | chr3_1:84097126-84097145 | None:intergenic | 25.0% |
| !!! | TTTGGTTCATCATTTTGTTA+CGG | + | chr3_1:84097269-84097288 | Msa0381770:intron | 25.0% |
| !!! | GTACCATTTGTAATTTTTTC+TGG | + | chr3_1:84098131-84098150 | Msa0381770:intron | 25.0% |
| ! | ATGCCAGAAAAAATTACAAA+TGG | - | chr3_1:84098137-84098156 | None:intergenic | 25.0% |
| !!! | TAATTTTTTCTGGCATATCT+TGG | + | chr3_1:84098141-84098160 | Msa0381770:intron | 25.0% |
| !! | AAAAGTGCATAATCCAATTT+CGG | - | chr3_1:84098282-84098301 | None:intergenic | 25.0% |
| ! | TAAGTGGAAAAATTAGAAGA+CGG | - | chr3_1:84098423-84098442 | None:intergenic | 25.0% |
| ! | CTAACTCACATTATTGATAT+AGG | - | chr3_1:84098590-84098609 | None:intergenic | 25.0% |
| ! | AAGGGGTAAGATTGTATTTT+TGG | - | chr3_1:84095608-84095627 | None:intergenic | 30.0% |
| TTAAGAGAGAAAAAATAGGG+GGG | - | chr3_1:84095688-84095707 | None:intergenic | 30.0% | |
| CTATTCTCTAATCATGAAAC+TGG | + | chr3_1:84095891-84095910 | Msa0381770:intron | 30.0% | |
| GGTTGTGATTAATTTATGCA+TGG | - | chr3_1:84095951-84095970 | None:intergenic | 30.0% | |
| AATCACAACCATCAGATAAT+TGG | + | chr3_1:84095961-84095980 | Msa0381770:intron | 30.0% | |
| AACGGAAAACAAATCAGTTA+CGG | - | chr3_1:84096163-84096182 | None:intergenic | 30.0% | |
| AAACACTAACATCGAGAAAA+CGG | - | chr3_1:84096181-84096200 | None:intergenic | 30.0% | |
| CCGAAAACCTAAAAAATTAG+AGG | - | chr3_1:84096346-84096365 | None:intergenic | 30.0% | |
| !! | TCTAAATTTGTTGTGTTCTG+TGG | + | chr3_1:84096617-84096636 | Msa0381770:intron | 30.0% |
| CTTTCCCAAAAATTGAAACA+GGG | + | chr3_1:84096667-84096686 | Msa0381770:intron | 30.0% | |
| ! | TTCACCCTGTTTCAATTTTT+GGG | - | chr3_1:84096674-84096693 | None:intergenic | 30.0% |
| AGTAATTGCCAATAACCAAA+GGG | - | chr3_1:84096752-84096771 | None:intergenic | 30.0% | |
| TAGTAATTGCCAATAACCAA+AGG | - | chr3_1:84096753-84096772 | None:intergenic | 30.0% | |
| ! | TTGATATTTTGCATCTGTCA+AGG | + | chr3_1:84096858-84096877 | Msa0381770:intron | 30.0% |
| ! | TGATATTTTGCATCTGTCAA+GGG | + | chr3_1:84096859-84096878 | Msa0381770:intron | 30.0% |
| TAGCTATGACAATGTTAAAG+TGG | + | chr3_1:84096986-84097005 | Msa0381770:CDS | 30.0% | |
| AGCTATGACAATGTTAAAGT+GGG | + | chr3_1:84096987-84097006 | Msa0381770:CDS | 30.0% | |
| ! | GGTGTCTTTTATGTCAATAA+AGG | + | chr3_1:84097047-84097066 | Msa0381770:intron | 30.0% |
| TAAAAGTAAACATACCACAC+TGG | - | chr3_1:84097246-84097265 | None:intergenic | 30.0% | |
| TTTAACAAAAAAGGGAAGCT+TGG | - | chr3_1:84097401-84097420 | None:intergenic | 30.0% | |
| CAAATTCTGATAATCACATG+GGG | - | chr3_1:84097436-84097455 | None:intergenic | 30.0% | |
| GCAAATTCTGATAATCACAT+GGG | - | chr3_1:84097437-84097456 | None:intergenic | 30.0% | |
| AGGTATAATATGGTTGAACA+AGG | + | chr3_1:84097464-84097483 | Msa0381770:intron | 30.0% | |
| !! | AAAATGAAAATACTGGTTCC+TGG | - | chr3_1:84097496-84097515 | None:intergenic | 30.0% |
| ! | AGGAACCAGTATTTTCATTT+TGG | + | chr3_1:84097495-84097514 | Msa0381770:CDS | 30.0% |
| TTGAGCCAAAATGAAAATAC+TGG | - | chr3_1:84097503-84097522 | None:intergenic | 30.0% | |
| ! | ACTATTGATGGTAAATCAAC+TGG | + | chr3_1:84097748-84097767 | Msa0381770:CDS | 30.0% |
| CAATTTATAAAATCTCTGCG+AGG | - | chr3_1:84097814-84097833 | None:intergenic | 30.0% | |
| ! | CTCGCAGAGATTTTATAAAT+TGG | + | chr3_1:84097812-84097831 | Msa0381770:intron | 30.0% |
| !! | GGTCTTAGCTTTAATTTCAT+TGG | + | chr3_1:84097833-84097852 | Msa0381770:intron | 30.0% |
| ACCATGATAAATCATGCAAT+TGG | + | chr3_1:84098022-84098041 | Msa0381770:CDS | 30.0% | |
| TCCAATTGCATGATTTATCA+TGG | - | chr3_1:84098026-84098045 | None:intergenic | 30.0% | |
| GTTGATTAGATTGTTACCTA+TGG | + | chr3_1:84098163-84098182 | Msa0381770:intron | 30.0% | |
| !! | GAAGAAAGGTTCTTTTAGAA+TGG | + | chr3_1:84098203-84098222 | Msa0381770:intron | 30.0% |
| ! | ATTGGATTATGCACTTTTGA+TGG | + | chr3_1:84098284-84098303 | Msa0381770:CDS | 30.0% |
| AATGAAAGGAAATCATCTAG+TGG | + | chr3_1:84098472-84098491 | Msa0381770:CDS | 30.0% | |
| ATAGGTTAGTATCTGATCTT+GGG | - | chr3_1:84098572-84098591 | None:intergenic | 30.0% | |
| TATAGGTTAGTATCTGATCT+TGG | - | chr3_1:84098573-84098592 | None:intergenic | 30.0% | |
| TAAGAATCAAGAGATGAAAC+AGG | - | chr3_1:84098639-84098658 | None:intergenic | 30.0% | |
| !! | TATGATTAATTTGCAGACAC+TGG | - | chr3_1:84098996-84099015 | None:intergenic | 30.0% |
| !! | TTATATCATTTTCTAGCCCA+GGG | - | chr3_1:84099045-84099064 | None:intergenic | 30.0% |
| CATGAAACTGGCAAAAGTTA+TGG | + | chr3_1:84095903-84095922 | Msa0381770:intron | 35.0% | |
| ACAAGTGTCCAATTATCTGA+TGG | - | chr3_1:84095972-84095991 | None:intergenic | 35.0% | |
| AATCAACCGAAAAATGACGT+CGG | - | chr3_1:84096078-84096097 | None:intergenic | 35.0% | |
| !!! | GTCATTTTTCGGTTGATTCA+CGG | + | chr3_1:84096080-84096099 | Msa0381770:intron | 35.0% |
| !! | GTTGTTGTTAATTTTGGTGC+AGG | + | chr3_1:84096439-84096458 | Msa0381770:intron | 35.0% |
| !! | CCTGTAAGTATTTGATTTGG+TGG | - | chr3_1:84096495-84096514 | None:intergenic | 35.0% |
| CCACCAAATCAAATACTTAC+AGG | + | chr3_1:84096492-84096511 | Msa0381770:intron | 35.0% | |
| !! | CCTGTTTCAATTTTTGGGAA+AGG | - | chr3_1:84096669-84096688 | None:intergenic | 35.0% |
| CCTTTCCCAAAAATTGAAAC+AGG | + | chr3_1:84096666-84096685 | Msa0381770:intron | 35.0% | |
| ! | CTTCACCCTGTTTCAATTTT+TGG | - | chr3_1:84096675-84096694 | None:intergenic | 35.0% |
| AATGCTGCTGCAATTCAATA+TGG | + | chr3_1:84096939-84096958 | Msa0381770:CDS | 35.0% | |
| !! | GATAGTAAAAAGGTGCTATG+TGG | - | chr3_1:84097116-84097135 | None:intergenic | 35.0% |
| ! | CATAGCACCTTTTTACTATC+AGG | + | chr3_1:84097116-84097135 | Msa0381770:intron | 35.0% |
| GGAGTTTATTGAAGCAACTA+AGG | + | chr3_1:84097137-84097156 | Msa0381770:intron | 35.0% | |
| ! | GCCAAGTTTGATGGTATATT+GGG | + | chr3_1:84097183-84097202 | Msa0381770:CDS | 35.0% |
| TCCCAATATACCATCAAACT+TGG | - | chr3_1:84097187-84097206 | None:intergenic | 35.0% | |
| ! | TTTGATGGTATATTGGGACT+TGG | + | chr3_1:84097189-84097208 | Msa0381770:CDS | 35.0% |
| GGATTTCAAGAGATATCAGT+TGG | + | chr3_1:84097210-84097229 | Msa0381770:CDS | 35.0% | |
| CGCAAATTCTGATAATCACA+TGG | - | chr3_1:84097438-84097457 | None:intergenic | 35.0% | |
| ! | CAATATCCTTTTCTTGTCAC+AGG | - | chr3_1:84097611-84097630 | None:intergenic | 35.0% |
| CTGTGACAAGAAAAGGATAT+TGG | + | chr3_1:84097609-84097628 | Msa0381770:CDS | 35.0% | |
| ATGGGAGATGTAACTATTGA+TGG | + | chr3_1:84097736-84097755 | Msa0381770:CDS | 35.0% | |
| TCTCTGCGAGGAAAATAAAT+TGG | - | chr3_1:84097802-84097821 | None:intergenic | 35.0% | |
| TGAGTCGTATGTTAGAAGAA+AGG | + | chr3_1:84098189-84098208 | Msa0381770:intron | 35.0% | |
| ! | TGCTTTTCCTTTACTCCTTT+AGG | + | chr3_1:84098235-84098254 | Msa0381770:intron | 35.0% |
| ATTTCGGAACAGATCTTCTT+TGG | - | chr3_1:84098266-84098285 | None:intergenic | 35.0% | |
| AAGAAGATCTGTTCCGAAAT+TGG | + | chr3_1:84098266-84098285 | Msa0381770:CDS | 35.0% | |
| TTCGATGACCAAAGATTCAA+AGG | - | chr3_1:84098350-84098369 | None:intergenic | 35.0% | |
| CTCTCGATAGAAAAACTAAG+TGG | - | chr3_1:84098439-84098458 | None:intergenic | 35.0% | |
| !! | TTTTTCTATCGAGAGTGTAG+TGG | + | chr3_1:84098444-84098463 | Msa0381770:CDS | 35.0% |
| AAATCATCTAGTGGTCTTCA+CGG | + | chr3_1:84098481-84098500 | Msa0381770:CDS | 35.0% | |
| AAACAGGAAACTCAAATAGC+AGG | - | chr3_1:84098623-84098642 | None:intergenic | 35.0% | |
| CCAATTGTGAAGGAAATTAC+AGG | - | chr3_1:84098748-84098767 | None:intergenic | 35.0% | |
| CCTGTAATTTCCTTCACAAT+TGG | + | chr3_1:84098745-84098764 | Msa0381770:CDS | 35.0% | |
| GTAATTTCCTTCACAATTGG+TGG | + | chr3_1:84098748-84098767 | Msa0381770:CDS | 35.0% | |
| AAAGCAATCAATCAGATGTG+AGG | - | chr3_1:84098811-84098830 | None:intergenic | 35.0% | |
| !! | TTGATTGCTTTTGCAATGAC+CGG | + | chr3_1:84098820-84098839 | Msa0381770:intron | 35.0% |
| AGCATAAAATAATCGGTGAC+CGG | - | chr3_1:84098842-84098861 | None:intergenic | 35.0% | |
| ATTCTTAAGATCGGAGAACT+AGG | + | chr3_1:84098903-84098922 | Msa0381770:intron | 35.0% | |
| !! | GTTATATCATTTTCTAGCCC+AGG | - | chr3_1:84099046-84099065 | None:intergenic | 35.0% |
| GGACACTTGTAATGATCCTA+TGG | + | chr3_1:84095982-84096001 | Msa0381770:intron | 40.0% | |
| ATGAGGTAGGAGAAGATTGT+GGG | - | chr3_1:84096022-84096041 | None:intergenic | 40.0% | |
| TATGAGGTAGGAGAAGATTG+TGG | - | chr3_1:84096023-84096042 | None:intergenic | 40.0% | |
| GAAAAATGACGTCGGAGTTA+CGG | - | chr3_1:84096070-84096089 | None:intergenic | 40.0% | |
| !!! | GTAACTCCGACGTCATTTTT+CGG | + | chr3_1:84096069-84096088 | Msa0381770:intron | 40.0% |
| !! | ATTTTTCGGTTGATTCACGG+CGG | + | chr3_1:84096083-84096102 | Msa0381770:intron | 40.0% |
| GGAAAACAAATCAGTTACGG+CGG | - | chr3_1:84096160-84096179 | None:intergenic | 40.0% | |
| !!! | CTTTTTTCGTTCATGCTGCT+AGG | + | chr3_1:84096239-84096258 | Msa0381770:CDS | 40.0% |
| !! | TTTTTGACTCCTCCAGTAGT+AGG | - | chr3_1:84096274-84096293 | None:intergenic | 40.0% |
| !! | TGATTTGGTGGACCTGTATT+TGG | - | chr3_1:84096483-84096502 | None:intergenic | 40.0% |
| GAATTCTACCATTCACCCTT+TGG | + | chr3_1:84096734-84096753 | Msa0381770:intron | 40.0% | |
| ACCATTCACCCTTTGGTTAT+TGG | + | chr3_1:84096741-84096760 | Msa0381770:intron | 40.0% | |
| ! | TTGGTTTCGTGCTGTTAACT+AGG | + | chr3_1:84096915-84096934 | Msa0381770:intron | 40.0% |
| ! | TGGTTTCGTGCTGTTAACTA+GGG | + | chr3_1:84096916-84096935 | Msa0381770:intron | 40.0% |
| GCTGCAATTCAATATGGTAC+TGG | + | chr3_1:84096945-84096964 | Msa0381770:CDS | 40.0% | |
| ! | TATGGTACTGGAGCAATTTC+TGG | + | chr3_1:84096957-84096976 | Msa0381770:CDS | 40.0% |
| CGACATAGTTGTAAAGAACC+AGG | + | chr3_1:84097010-84097029 | Msa0381770:CDS | 40.0% | |
| AACCAGGTAATGCTGATCAT+TGG | + | chr3_1:84097026-84097045 | Msa0381770:intron | 40.0% | |
| ATCAAACTTGGCCACCAAAA+AGG | - | chr3_1:84097175-84097194 | None:intergenic | 40.0% | |
| !! | TTTTTGGTGGCCAAGTTTGA+TGG | + | chr3_1:84097174-84097193 | Msa0381770:CDS | 40.0% |
| ! | GGCCAAGTTTGATGGTATAT+TGG | + | chr3_1:84097182-84097201 | Msa0381770:CDS | 40.0% |
| TTCATTGTAGACTCACTCAG+TGG | + | chr3_1:84097330-84097349 | Msa0381770:intron | 40.0% | |
| TATCAGAATTTGCGTGTCAC+AGG | + | chr3_1:84097444-84097463 | Msa0381770:intron | 40.0% | |
| TGCGTGTCACAGGTATAATA+TGG | + | chr3_1:84097454-84097473 | Msa0381770:intron | 40.0% | |
| TATGTGCCTGTGACAAGAAA+AGG | + | chr3_1:84097602-84097621 | Msa0381770:CDS | 40.0% | |
| GACAAGAAAAGGATATTGGC+AGG | + | chr3_1:84097613-84097632 | Msa0381770:CDS | 40.0% | |
| ! | GTTTGACGTGCTTTTAATCC+AGG | + | chr3_1:84097855-84097874 | Msa0381770:intron | 40.0% |
| AATCCAGGATATTGCGTTGA+TGG | + | chr3_1:84097870-84097889 | Msa0381770:intron | 40.0% | |
| !! | ATATTGCGTTGATGGCTGTT+CGG | + | chr3_1:84097878-84097897 | Msa0381770:intron | 40.0% |
| ! | AATCATGCAATTGGAGCATC+AGG | + | chr3_1:84098031-84098050 | Msa0381770:CDS | 40.0% |
| AACATACGACTCATGACCAT+AGG | - | chr3_1:84098182-84098201 | None:intergenic | 40.0% | |
| !! | GTGTAGTGGACGAAAATGAA+AGG | + | chr3_1:84098458-84098477 | Msa0381770:CDS | 40.0% |
| TTCTTGTTCTGCTTGTGAGA+TGG | + | chr3_1:84098507-84098526 | Msa0381770:CDS | 40.0% | |
| TGATAAAATGCCTAGCCCAA+TGG | + | chr3_1:84098684-84098703 | Msa0381770:CDS | 40.0% | |
| GATAAAATGCCTAGCCCAAT+GGG | + | chr3_1:84098685-84098704 | Msa0381770:CDS | 40.0% | |
| CAACAGATGATTCTCCCATT+GGG | - | chr3_1:84098702-84098721 | None:intergenic | 40.0% | |
| TCAACAGATGATTCTCCCAT+TGG | - | chr3_1:84098703-84098722 | None:intergenic | 40.0% | |
| AGTTCTTCCACCAATTGTGA+AGG | - | chr3_1:84098758-84098777 | None:intergenic | 40.0% | |
| !!! | GGAAAGCTTTTTTCAGCTAG+TGG | - | chr3_1:84098975-84098994 | None:intergenic | 40.0% |
| ! | GAAGCAGTTGAGGCTTATTT+TGG | + | chr3_1:84099145-84099164 | Msa0381770:CDS | 40.0% |
| !!! | GTTTTTTACGCGAAAGTGCG+AGG | + | chr3_1:84095516-84095535 | Msa0381770:intron | 45.0% |
| TGAGGTAGGAGAAGATTGTG+GGG | - | chr3_1:84096021-84096040 | None:intergenic | 45.0% | |
| ATGGTTGAGTGGTATGAGGT+AGG | - | chr3_1:84096035-84096054 | None:intergenic | 45.0% | |
| GAGAATGGTTGAGTGGTATG+AGG | - | chr3_1:84096039-84096058 | None:intergenic | 45.0% | |
| !! | TTTTTCGGTTGATTCACGGC+GGG | + | chr3_1:84096084-84096103 | Msa0381770:intron | 45.0% |
| AAATCAGTTACGGCGGTGAA+CGG | - | chr3_1:84096153-84096172 | None:intergenic | 45.0% | |
| AGGAAATCTGCTCCTACTAC+TGG | + | chr3_1:84096259-84096278 | Msa0381770:CDS | 45.0% | |
| AAATCTGCTCCTACTACTGG+AGG | + | chr3_1:84096262-84096281 | Msa0381770:CDS | 45.0% | |
| ACGAAATTACCGAAGTGCGA+CGG | - | chr3_1:84096320-84096339 | None:intergenic | 45.0% | |
| GCTACTTCCATGCCAAATAC+AGG | + | chr3_1:84096468-84096487 | Msa0381770:CDS | 45.0% | |
| GCCAATAACCAAAGGGTGAA+TGG | - | chr3_1:84096745-84096764 | None:intergenic | 45.0% | |
| CACCAATGATCAGCATTACC+TGG | - | chr3_1:84097031-84097050 | None:intergenic | 45.0% | |
| ATTGAAGCAACTAAGGAGCC+CGG | + | chr3_1:84097144-84097163 | Msa0381770:CDS | 45.0% | |
| TTGGAAATGCTGTTCCAGTG+TGG | + | chr3_1:84097229-84097248 | Msa0381770:intron | 45.0% | |
| ATGACTGCCTTGCAAATGCT+TGG | + | chr3_1:84097301-84097320 | Msa0381770:intron | 45.0% | |
| AACCTTGCCAAGCATTTGCA+AGG | - | chr3_1:84097311-84097330 | None:intergenic | 45.0% | |
| CTATGAACGGGTCTACAGAA+GGG | - | chr3_1:84097362-84097381 | None:intergenic | 45.0% | |
| ACTATGAACGGGTCTACAGA+AGG | - | chr3_1:84097363-84097382 | None:intergenic | 45.0% | |
| TTCTGTAGACCCGTTCATAG+TGG | + | chr3_1:84097362-84097381 | Msa0381770:intron | 45.0% | |
| TGTAAGGCTGCCACTATGAA+CGG | - | chr3_1:84097375-84097394 | None:intergenic | 45.0% | |
| ! | GGTTGAACAAGGTCTTATCC+AGG | + | chr3_1:84097475-84097494 | Msa0381770:CDS | 45.0% |
| ! | CTTCCTCTTCCTCTGGTTTA+CGG | - | chr3_1:84097526-84097545 | None:intergenic | 45.0% |
| GTAAACCAGAGGAAGAGGAA+GGG | + | chr3_1:84097525-84097544 | Msa0381770:CDS | 45.0% | |
| TAAACCAGAGGAAGAGGAAG+GGG | + | chr3_1:84097526-84097545 | Msa0381770:CDS | 45.0% | |
| ! | GAAGGGGGTGAGATTGTTTT+CGG | + | chr3_1:84097542-84097561 | Msa0381770:CDS | 45.0% |
| TGTTGATCCTGCTCACTACA+AGG | + | chr3_1:84097568-84097587 | Msa0381770:CDS | 45.0% | |
| GTTGATCCTGCTCACTACAA+GGG | + | chr3_1:84097569-84097588 | Msa0381770:CDS | 45.0% | |
| TGATTTCCCTTGTAGTGAGC+AGG | - | chr3_1:84097578-84097597 | None:intergenic | 45.0% | |
| GACTCGGGAACATCTTTGTA+TGG | + | chr3_1:84097909-84097928 | Msa0381770:intron | 45.0% | |
| AGAGTGCAAGACCATTGTTG+CGG | + | chr3_1:84098066-84098085 | Msa0381770:CDS | 45.0% | |
| AAGACCATTGTTGCGGAGTA+TGG | + | chr3_1:84098073-84098092 | Msa0381770:CDS | 45.0% | |
| TTGTCCATACTCCGCAACAA+TGG | - | chr3_1:84098080-84098099 | None:intergenic | 45.0% | |
| TCTTCTTTGGCTGTGCCTAA+AGG | - | chr3_1:84098253-84098272 | None:intergenic | 45.0% | |
| CTTGTGAGATGGCAGTTGTT+TGG | + | chr3_1:84098518-84098537 | Msa0381770:CDS | 45.0% | |
| !! | ATATTTAAAAGTTAAATTAT+AGG | - | chr3_1:84095836-84095855 | None:intergenic | 5.0% |
| !!! | AATAAATTTTTAACAAAAAA+GGG | - | chr3_1:84097409-84097428 | None:intergenic | 5.0% |
| AAATGACGTCGGAGTTACGG+TGG | - | chr3_1:84096067-84096086 | None:intergenic | 50.0% | |
| AAACCTCACTGTTACCGTCC+TGG | + | chr3_1:84096292-84096311 | Msa0381770:CDS | 50.0% | |
| ! | TGGTGGACCTGTATTTGGCA+TGG | - | chr3_1:84096478-84096497 | None:intergenic | 50.0% |
| GCCACCAAAAAGGTAACACC+GGG | - | chr3_1:84097165-84097184 | None:intergenic | 50.0% | |
| GGCCACCAAAAAGGTAACAC+CGG | - | chr3_1:84097166-84097185 | None:intergenic | 50.0% | |
| TGCCTTGCAAATGCTTGGCA+AGG | + | chr3_1:84097306-84097325 | Msa0381770:intron | 50.0% | |
| GTAAGGCTGCCACTATGAAC+GGG | - | chr3_1:84097374-84097393 | None:intergenic | 50.0% | |
| AAGGGAAGCTTGGAGCTGTA+AGG | - | chr3_1:84097391-84097410 | None:intergenic | 50.0% | |
| TTGGCTCAACCGTAAACCAG+AGG | + | chr3_1:84097514-84097533 | Msa0381770:CDS | 50.0% | |
| CAACCGTAAACCAGAGGAAG+AGG | + | chr3_1:84097520-84097539 | Msa0381770:CDS | 50.0% | |
| CGTAAACCAGAGGAAGAGGA+AGG | + | chr3_1:84097524-84097543 | Msa0381770:CDS | 50.0% | |
| AAACCAGAGGAAGAGGAAGG+GGG | + | chr3_1:84097527-84097546 | Msa0381770:CDS | 50.0% | |
| CAGCCATCAACGCAATATCC+TGG | - | chr3_1:84097876-84097895 | None:intergenic | 50.0% | |
| ! | CTGTTCGGCAATTGCTGACT+CGG | + | chr3_1:84097893-84097912 | Msa0381770:intron | 50.0% |
| !! | TGTTCGGCAATTGCTGACTC+GGG | + | chr3_1:84097894-84097913 | Msa0381770:intron | 50.0% |
| GGCTGTGCCTAAAGGAGTAA+AGG | - | chr3_1:84098245-84098264 | None:intergenic | 50.0% | |
| !! | TGCACTTTTGATGGCACTCG+TGG | + | chr3_1:84098293-84098312 | Msa0381770:CDS | 50.0% |
| TTTGGATGCAGAACCAGCTG+AGG | + | chr3_1:84098536-84098555 | Msa0381770:CDS | 50.0% | |
| GATGATTCTCCCATTGGGCT+AGG | - | chr3_1:84098697-84098716 | None:intergenic | 50.0% | |
| TGCACTTCAGGAAGCAGTTG+AGG | + | chr3_1:84099135-84099154 | Msa0381770:CDS | 50.0% | |
| ! | GGGTCTGAGGTGAGAACCAT+AGG | - | chr3_1:84096001-84096020 | None:intergenic | 55.0% |
| GGAGAAGATTGTGGGGTCTG+AGG | - | chr3_1:84096014-84096033 | None:intergenic | 55.0% | |
| GTGAACGGTGGTTACCTTGG+TGG | - | chr3_1:84096138-84096157 | None:intergenic | 55.0% | |
| GTTCCAGGACGGTAACAGTG+AGG | - | chr3_1:84096298-84096317 | None:intergenic | 55.0% | |
| !!! | GGAGCCCGGTGTTACCTTTT+TGG | + | chr3_1:84097158-84097177 | Msa0381770:CDS | 55.0% |
| !!! | GCCCGGTGTTACCTTTTTGG+TGG | + | chr3_1:84097161-84097180 | Msa0381770:CDS | 55.0% |
| ! | GGGGGTGAGATTGTTTTCGG+TGG | + | chr3_1:84097545-84097564 | Msa0381770:CDS | 55.0% |
| ! | GGCACTCGTGGTGTTGAGTA+AGG | + | chr3_1:84098305-84098324 | Msa0381770:intron | 55.0% |
| !! | GGGTCTTATTCTGCCTCAGC+TGG | - | chr3_1:84098552-84098571 | None:intergenic | 55.0% |
| AACTTTCGACCTTGCCCCAG+AGG | + | chr3_1:84098774-84098793 | Msa0381770:CDS | 55.0% | |
| AGGACGTCATACCTCCTCTG+GGG | - | chr3_1:84098791-84098810 | None:intergenic | 55.0% | |
| GAGGACGTCATACCTCCTCT+GGG | - | chr3_1:84098792-84098811 | None:intergenic | 55.0% | |
| TGAGGACGTCATACCTCCTC+TGG | - | chr3_1:84098793-84098812 | None:intergenic | 55.0% | |
| AACTACTCCCAGAGACACCC+TGG | + | chr3_1:84099025-84099044 | Msa0381770:intron | 55.0% | |
| ACTACTCCCAGAGACACCCT+GGG | + | chr3_1:84099026-84099045 | Msa0381770:intron | 55.0% | |
| ! | TTCTAGCCCAGGGTGTCTCT+GGG | - | chr3_1:84099035-84099054 | None:intergenic | 55.0% |
| ! | TTTCTAGCCCAGGGTGTCTC+TGG | - | chr3_1:84099036-84099055 | None:intergenic | 55.0% |
| CCTGAAGTGCAAGAACTGCG+TGG | - | chr3_1:84099126-84099145 | None:intergenic | 55.0% | |
| CCACGCAGTTCTTGCACTTC+AGG | + | chr3_1:84099123-84099142 | Msa0381770:CDS | 55.0% | |
| GCGAGCTGCTTCCTTGGAGT+CGG | - | chr3_1:84096116-84096135 | None:intergenic | 60.0% | |
| !! | TTGGTGGCGAGCTGCTTCCT+TGG | - | chr3_1:84096122-84096141 | None:intergenic | 60.0% |
| AAGGAAGCAGCTCGCCACCA+AGG | + | chr3_1:84096121-84096140 | Msa0381770:intron | 60.0% | |
| GCGGTGAACGGTGGTTACCT+TGG | - | chr3_1:84096141-84096160 | None:intergenic | 60.0% | |
| TCAGTTACGGCGGTGAACGG+TGG | - | chr3_1:84096150-84096169 | None:intergenic | 60.0% | |
| GAAGTGCGACGGTTCCAGGA+CGG | - | chr3_1:84096309-84096328 | None:intergenic | 60.0% | |
| GTCCTGGAACCGTCGCACTT+CGG | + | chr3_1:84096308-84096327 | Msa0381770:CDS | 60.0% | |
| TACCGAAGTGCGACGGTTCC+AGG | - | chr3_1:84096313-84096332 | None:intergenic | 60.0% | |
| TCACCCCCTTCCTCTTCCTC+TGG | - | chr3_1:84097533-84097552 | None:intergenic | 60.0% | |
| TTTCGACCTTGCCCCAGAGG+AGG | + | chr3_1:84098777-84098796 | Msa0381770:CDS | 60.0% | |
| !! | GTCATACCTCCTCTGGGGCA+AGG | - | chr3_1:84098786-84098805 | None:intergenic | 60.0% |
| GTGCAAGAACTGCGTGGCTC+TGG | - | chr3_1:84099120-84099139 | None:intergenic | 60.0% | |
| GGCGCGCGAGAATGGTTGAG+TGG | - | chr3_1:84096046-84096065 | None:intergenic | 65.0% | |
| GTTACGGTGGCGCGCGAGAA+TGG | - | chr3_1:84096054-84096073 | None:intergenic | 65.0% | |
| !! | GCGGGATTGCGCCGACTCCA+AGG | + | chr3_1:84096102-84096121 | Msa0381770:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 84095510 | 84099174 | 84095510 | ID=Msa0381770;Name=Msa0381770 |
| chr3_1 | mRNA | 84095510 | 84099174 | 84095510 | ID=Msa0381770-mRNA-1;Parent=Msa0381770;Name=Msa0381770-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.08|0.07|0.76|0.75|0.84|13|0|372 |
| chr3_1 | exon | 84095510 | 84095515 | 84095510 | ID=Msa0381770-mRNA-1:exon:21790;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84096196 | 84096329 | 84096196 | ID=Msa0381770-mRNA-1:exon:21791;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84096461 | 84096489 | 84096461 | ID=Msa0381770-mRNA-1:exon:21792;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84096937 | 84097031 | 84096937 | ID=Msa0381770-mRNA-1:exon:21793;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84097138 | 84097247 | 84097138 | ID=Msa0381770-mRNA-1:exon:21794;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84097466 | 84097634 | 84097466 | ID=Msa0381770-mRNA-1:exon:21795;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84097730 | 84097769 | 84097730 | ID=Msa0381770-mRNA-1:exon:21796;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84097877 | 84097884 | 84097877 | ID=Msa0381770-mRNA-1:exon:21797;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84098013 | 84098126 | 84098013 | ID=Msa0381770-mRNA-1:exon:21798;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84098257 | 84098321 | 84098257 | ID=Msa0381770-mRNA-1:exon:21799;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84098444 | 84098600 | 84098444 | ID=Msa0381770-mRNA-1:exon:21800;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84098679 | 84098798 | 84098679 | ID=Msa0381770-mRNA-1:exon:21801;Parent=Msa0381770-mRNA-1 |
| chr3_1 | exon | 84099103 | 84099174 | 84099103 | ID=Msa0381770-mRNA-1:exon:21802;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84095510 | 84095515 | 84095510 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84096196 | 84096329 | 84096196 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84096461 | 84096489 | 84096461 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84096937 | 84097031 | 84096937 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84097138 | 84097247 | 84097138 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84097466 | 84097634 | 84097466 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84097730 | 84097769 | 84097730 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84097877 | 84097884 | 84097877 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84098013 | 84098126 | 84098013 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84098257 | 84098321 | 84098257 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84098444 | 84098600 | 84098444 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84098679 | 84098798 | 84098679 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| chr3_1 | CDS | 84099103 | 84099174 | 84099103 | ID=Msa0381770-mRNA-1:cds;Parent=Msa0381770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
