Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045770 | sp|O65390|APA1_ARATH | 67.385 | 325 | 86 | 2 | 47 | 351 | 129 | 453 | 4.99e-160 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004880 | Msa0045770 | 0.813696 | 2.245684e-51 | -8.615850e-47 |
| Msa0017510 | Msa0045770 | 0.828439 | 8.985501e-55 | -8.615850e-47 |
| Msa0045770 | Msa0046140 | 0.920582 | 1.065715e-87 | -8.615850e-47 |
| Msa0045770 | Msa0048000 | 0.812045 | 5.164220e-51 | -8.615850e-47 |
| Msa0045770 | Msa0051790 | 0.804712 | 1.893681e-49 | -8.615850e-47 |
| Msa0045770 | Msa0068680 | 0.800060 | 1.720349e-48 | -8.615850e-47 |
| Msa0045770 | Msa0089360 | 0.807855 | 4.123012e-50 | -8.615850e-47 |
| Msa0045770 | Msa0096450 | 0.815538 | 8.784626e-52 | -8.615850e-47 |
| Msa0045770 | Msa0112750 | 0.816681 | 4.878491e-52 | -8.615850e-47 |
| Msa0045770 | Msa0157290 | 0.827430 | 1.571576e-54 | -8.615850e-47 |
| Msa0045770 | Msa0210450 | 0.809232 | 2.094408e-50 | -8.615850e-47 |
| Msa0045770 | Msa0216240 | 0.820311 | 7.334487e-53 | -8.615850e-47 |
| Msa0045770 | Msa0220740 | 0.800738 | 1.251673e-48 | -8.615850e-47 |
| Msa0045770 | Msa0225600 | 0.826538 | 2.567866e-54 | -8.615850e-47 |
| Msa0045770 | Msa0243710 | 0.819513 | 1.116557e-52 | -8.615850e-47 |
| Msa0045770 | Msa0244860 | 0.833740 | 4.483400e-56 | -8.615850e-47 |
| Msa0045770 | Msa0258760 | 0.802532 | 5.365327e-49 | -8.615850e-47 |
| Msa0045770 | Msa0260810 | 0.817099 | 3.931136e-52 | -8.615850e-47 |
| Msa0045770 | Msa0262510 | 0.816854 | 4.460970e-52 | -8.615850e-47 |
| Msa0045770 | Msa0266450 | 0.819515 | 1.115136e-52 | -8.615850e-47 |
| Msa0045770 | Msa0276920 | 0.800885 | 1.168090e-48 | -8.615850e-47 |
| Msa0045770 | Msa0283450 | 0.816105 | 6.563867e-52 | -8.615850e-47 |
| Msa0045770 | Msa0287650 | 0.809500 | 1.835020e-50 | -8.615850e-47 |
| Msa0045770 | Msa0296560 | 0.806732 | 7.130728e-50 | -8.615850e-47 |
| Msa0045770 | Msa0297960 | 0.812796 | 3.540642e-51 | -8.615850e-47 |
| Msa0045770 | Msa0305700 | 0.802810 | 4.701298e-49 | -8.615850e-47 |
| Msa0045770 | Msa0322690 | 0.808885 | 2.485415e-50 | -8.615850e-47 |
| Msa0045770 | Msa0332000 | 0.806126 | 9.569965e-50 | -8.615850e-47 |
| Msa0045770 | Msa0333930 | 0.819343 | 1.221055e-52 | -8.615850e-47 |
| Msa0045770 | Msa0334040 | 0.805131 | 1.548087e-49 | -8.615850e-47 |
| Msa0045770 | Msa0334360 | 0.808882 | 2.488865e-50 | -8.615850e-47 |
| Msa0045770 | Msa0335040 | 0.807977 | 3.883067e-50 | -8.615850e-47 |
| Msa0045770 | Msa0341540 | 0.806338 | 8.633139e-50 | -8.615850e-47 |
| Msa0045770 | Msa0355220 | 0.803476 | 3.422875e-49 | -8.615850e-47 |
| Msa0045770 | Msa0363360 | 0.827870 | 1.231737e-54 | -8.615850e-47 |
| Msa0045770 | Msa0376590 | 0.806485 | 8.039191e-50 | -8.615850e-47 |
| Msa0045770 | Msa0381770 | 0.889551 | 2.188673e-73 | -8.615850e-47 |
| Msa0045770 | Msa0389340 | 0.816331 | 5.844879e-52 | -8.615850e-47 |
| Msa0045770 | Msa0399300 | 0.806530 | 7.866548e-50 | -8.615850e-47 |
| Msa0045770 | Msa0402290 | 0.823323 | 1.473327e-53 | -8.615850e-47 |
| Msa0045770 | Msa0410650 | 0.801972 | 6.996803e-49 | -8.615850e-47 |
| Msa0045770 | Msa0484780 | 0.858241 | 9.428660e-63 | -8.615850e-47 |
| Msa0045770 | Msa0512900 | 0.839238 | 1.785498e-57 | -8.615850e-47 |
| Msa0045770 | Msa0516370 | 0.801245 | 9.861082e-49 | -8.615850e-47 |
| Msa0045770 | Msa0523460 | 0.820799 | 5.666229e-53 | -8.615850e-47 |
| Msa0045770 | Msa0572420 | 0.807102 | 5.955725e-50 | -8.615850e-47 |
| Msa0045770 | Msa0623150 | 0.957475 | 2.480035e-115 | -8.615850e-47 |
| Msa0045770 | Msa0635610 | 0.801529 | 8.626621e-49 | -8.615850e-47 |
| Msa0045770 | Msa0647980 | 0.801286 | 9.671962e-49 | -8.615850e-47 |
| Msa0045770 | Msa0657970 | 0.834149 | 3.541591e-56 | -8.615850e-47 |
| Msa0045770 | Msa0682330 | 0.801746 | 7.786536e-49 | -8.615850e-47 |
| Msa0045770 | Msa0682550 | 0.819281 | 1.261299e-52 | -8.615850e-47 |
| Msa0045770 | Msa0693380 | 0.836394 | 9.602506e-57 | -8.615850e-47 |
| Msa0045770 | Msa0696640 | 0.810753 | 9.855796e-51 | -8.615850e-47 |
| Msa0045770 | Msa0715470 | 0.801425 | 9.057892e-49 | -8.615850e-47 |
| Msa0045770 | Msa0723990 | 0.802436 | 5.614293e-49 | -8.615850e-47 |
| Msa0045770 | Msa0744040 | 0.803732 | 3.029439e-49 | -8.615850e-47 |
| Msa0045770 | Msa0766630 | 0.802430 | 5.632220e-49 | -8.615850e-47 |
| Msa0045770 | Msa0790510 | 0.804775 | 1.836901e-49 | -8.615850e-47 |
| Msa0045770 | Msa0822650 | 0.803050 | 4.193333e-49 | -8.615850e-47 |
| Msa0045770 | Msa0824660 | 0.813212 | 2.868926e-51 | -8.615850e-47 |
| Msa0045770 | Msa0870530 | 0.817814 | 2.712757e-52 | -8.615850e-47 |
| Msa0045770 | Msa0880140 | 0.826879 | 2.128695e-54 | -8.615850e-47 |
| Msa0045770 | Msa0880970 | 0.955684 | 1.717402e-113 | -8.615850e-47 |
| Msa0045770 | Msa0907070 | 0.803731 | 3.030079e-49 | -8.615850e-47 |
| Msa0045770 | Msa0909120 | 0.800527 | 1.381988e-48 | -8.615850e-47 |
| Msa0045770 | Msa0933230 | 0.800925 | 1.146630e-48 | -8.615850e-47 |
| Msa0045770 | Msa0954130 | 0.812009 | 5.260001e-51 | -8.615850e-47 |
| Msa0045770 | Msa0954530 | 0.816049 | 6.755118e-52 | -8.615850e-47 |
| Msa0045770 | Msa0954550 | 0.803655 | 3.142723e-49 | -8.615850e-47 |
| Msa0045770 | Msa0974060 | 0.817761 | 2.787983e-52 | -8.615850e-47 |
| Msa0045770 | Msa1052830 | 0.801443 | 8.982839e-49 | -8.615850e-47 |
| Msa0045770 | Msa1082500 | 0.857216 | 1.898859e-62 | -8.615850e-47 |
| Msa0045770 | Msa1085200 | 0.808754 | 2.651540e-50 | -8.615850e-47 |
| Msa0045770 | Msa1098400 | 0.806698 | 7.248193e-50 | -8.615850e-47 |
| Msa0045770 | Msa1151910 | 0.803861 | 2.848300e-49 | -8.615850e-47 |
| Msa0045770 | Msa1158310 | 0.800244 | 1.578109e-48 | -8.615850e-47 |
| Msa0045770 | Msa1162550 | -0.804725 | 1.882129e-49 | -8.615850e-47 |
| Msa0045770 | Msa1172670 | 0.823776 | 1.154266e-53 | -8.615850e-47 |
| Msa0045770 | Msa1189470 | 0.801144 | 1.034125e-48 | -8.615850e-47 |
| Msa0045770 | Msa1192990 | 0.800632 | 1.316089e-48 | -8.615850e-47 |
| Msa0045770 | Msa1267960 | 0.808979 | 2.373560e-50 | -8.615850e-47 |
| Msa0045770 | Msa1278840 | 0.802876 | 4.555365e-49 | -8.615850e-47 |
| Msa0045770 | Msa1283860 | 0.810187 | 1.305591e-50 | -8.615850e-47 |
| Msa0045770 | Msa1297290 | 0.808072 | 3.707197e-50 | -8.615850e-47 |
| Msa0045770 | Msa1299070 | 0.805656 | 1.201689e-49 | -8.615850e-47 |
| Msa0045770 | Msa1318990 | 0.807441 | 5.046608e-50 | -8.615850e-47 |
| Msa0045770 | Msa1353470 | 0.822685 | 2.075859e-53 | -8.615850e-47 |
| Msa0045770 | Msa1384350 | 0.812455 | 4.202951e-51 | -8.615850e-47 |
| Msa0045770 | Msa1385000 | 0.808539 | 2.947315e-50 | -8.615850e-47 |
| Msa0045770 | Msa1392260 | 0.809808 | 1.575502e-50 | -8.615850e-47 |
| Msa0045770 | Msa1397250 | 0.835715 | 1.427599e-56 | -8.615850e-47 |
| Msa0045770 | Msa1397610 | 0.803249 | 3.814782e-49 | -8.615850e-47 |
| Msa0045770 | Msa1397860 | 0.803783 | 2.956956e-49 | -8.615850e-47 |
| Msa0045770 | Msa1399480 | 0.966486 | 5.504412e-126 | -8.615850e-47 |
| Msa0045770 | Msa1404540 | 0.807837 | 4.159448e-50 | -8.615850e-47 |
| Msa0045770 | Msa1409730 | 0.949784 | 6.303648e-108 | -8.615850e-47 |
| Msa0045770 | Msa1409870 | 0.814817 | 1.269843e-51 | -8.615850e-47 |
| Msa0045770 | Msa1410210 | 0.808495 | 3.011993e-50 | -8.615850e-47 |
| Msa0045770 | Msa1411020 | 0.812165 | 4.862716e-51 | -8.615850e-47 |
| Msa0045770 | Msa1424290 | 0.805792 | 1.124723e-49 | -8.615850e-47 |
| Msa0045770 | Msa1425100 | 0.818976 | 1.479633e-52 | -8.615850e-47 |
| Msa0045770 | Msa1429900 | 0.804301 | 2.306363e-49 | -8.615850e-47 |
| Msa0045770 | Msa1431060 | 0.805563 | 1.256773e-49 | -8.615850e-47 |
| Msa0045770 | Msa1434350 | 0.807392 | 5.169471e-50 | -8.615850e-47 |
| Msa0045770 | Msa1439320 | 0.811671 | 6.231603e-51 | -8.615850e-47 |
| Msa0045770 | Msa1457430 | 0.801364 | 9.322970e-49 | -8.615850e-47 |
| Msa0045770 | Msa1463670 | 0.802671 | 5.023219e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045770 | MtrunA17_Chr4g0075181 | 86.527 | 334 | 18 | 3 | 41 | 347 | 130 | 463 | 0.0 | 573 |
| Msa0045770 | MtrunA17_Chr2g0288851 | 67.593 | 324 | 84 | 3 | 48 | 351 | 135 | 457 | 4.85e-154 | 443 |
| Msa0045770 | MtrunA17_Chr1g0193211 | 52.381 | 336 | 138 | 4 | 36 | 351 | 122 | 455 | 1.16e-115 | 345 |
| Msa0045770 | MtrunA17_Chr7g0271351 | 52.366 | 317 | 130 | 3 | 55 | 351 | 136 | 451 | 6.10e-112 | 335 |
| Msa0045770 | MtrunA17_Chr4g0069631 | 44.083 | 338 | 168 | 3 | 36 | 353 | 110 | 446 | 9.27e-103 | 312 |
| Msa0045770 | MtrunA17_Chr2g0302421 | 43.787 | 338 | 164 | 3 | 37 | 354 | 118 | 449 | 2.78e-96 | 295 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0045770 | AT1G11910.1 | 67.385 | 325 | 86 | 2 | 47 | 351 | 129 | 453 | 5.08e-161 | 461 |
| Msa0045770 | AT1G11910.2 | 67.385 | 325 | 86 | 2 | 47 | 351 | 140 | 464 | 9.71e-161 | 461 |
| Msa0045770 | AT1G62290.6 | 65.421 | 321 | 91 | 2 | 47 | 347 | 136 | 456 | 1.66e-156 | 448 |
| Msa0045770 | AT1G62290.4 | 65.421 | 321 | 91 | 2 | 47 | 347 | 136 | 456 | 1.66e-156 | 448 |
| Msa0045770 | AT1G62290.5 | 64.923 | 325 | 94 | 2 | 47 | 351 | 136 | 460 | 2.95e-156 | 448 |
| Msa0045770 | AT1G62290.1 | 64.923 | 325 | 94 | 2 | 47 | 351 | 136 | 460 | 8.30e-156 | 448 |
| Msa0045770 | AT1G62290.2 | 64.923 | 325 | 94 | 2 | 47 | 351 | 136 | 460 | 8.30e-156 | 448 |
| Msa0045770 | AT4G04460.1 | 60.436 | 321 | 104 | 3 | 47 | 347 | 134 | 451 | 1.75e-141 | 412 |
| Msa0045770 | AT4G04460.2 | 59.813 | 321 | 102 | 4 | 47 | 347 | 134 | 447 | 1.58e-137 | 401 |
| Msa0045770 | AT1G62290.3 | 65.248 | 282 | 78 | 2 | 47 | 308 | 136 | 417 | 2.37e-133 | 388 |
| Msa0045770 | AT4G22050.1 | 44.521 | 146 | 75 | 5 | 55 | 196 | 100 | 243 | 2.28e-26 | 108 |
| Msa0045770 | AT1G69100.2 | 38.514 | 148 | 83 | 5 | 55 | 195 | 110 | 256 | 2.09e-24 | 103 |
| Msa0045770 | AT1G69100.1 | 38.514 | 148 | 83 | 5 | 55 | 195 | 102 | 248 | 2.44e-24 | 103 |
Find 84 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGTACTGGAGCAATTTC+TGG | 0.182146 | 1_1:+77727172 | Msa0045770:CDS |
| AAGAAGATCTGTTCCGAAAT+TGG | 0.186128 | 1_1:+77728481 | Msa0045770:CDS |
| GAAGCAGTTGAGGCTTATTT+TGG | 0.193569 | 1_1:+77729360 | Msa0045770:CDS |
| TGATTTGGTGGACCTGTATT+TGG | 0.271444 | 1_1:-77726695 | None:intergenic |
| ATTTCGGAACAGATCTTCTT+TGG | 0.285471 | 1_1:-77728478 | None:intergenic |
| CTTCCTCTTCCTCTGGTTTA+CGG | 0.290155 | 1_1:-77727738 | None:intergenic |
| CCACGCAGTTCTTGCACTTC+AGG | 0.291795 | 1_1:+77729338 | Msa0045770:CDS |
| ATCAAACTTGGCCACCAAAA+AGG | 0.312300 | 1_1:-77727387 | None:intergenic |
| GGCCAAGTTTGATGGTATAT+TGG | 0.314506 | 1_1:+77727397 | Msa0045770:CDS |
| TACCGAAGTGCGACGGTTCC+AGG | 0.319747 | 1_1:-77726525 | None:intergenic |
| CTAACTCACATTATTGATAT+AGG | 0.336786 | 1_1:-77728802 | None:intergenic |
| CCTGTAATTTCCTTCACAAT+TGG | 0.350996 | 1_1:+77728960 | Msa0045770:CDS |
| GCCAAGTTTGATGGTATATT+GGG | 0.353483 | 1_1:+77727398 | Msa0045770:CDS |
| AAAAGTGCATAATCCAATTT+CGG | 0.356449 | 1_1:-77728494 | None:intergenic |
| CTTGTGAGATGGCAGTTGTT+TGG | 0.366615 | 1_1:+77728733 | Msa0045770:CDS |
| TGGGGACGTCATACCTCCTC+TGG | 0.371859 | 1_1:-77729005 | None:intergenic |
| GTGCAAGAACTGCGTGGCTC+TGG | 0.374979 | 1_1:-77729332 | None:intergenic |
| TATAGGTTAGTATCTGATCT+TGG | 0.384235 | 1_1:-77728785 | None:intergenic |
| TGCGTGTCACAGGTATAATA+TGG | 0.389058 | 1_1:+77727669 | Msa0045770:intron |
| CCAATTGTGAAGGAAATTAC+AGG | 0.391923 | 1_1:-77728960 | None:intergenic |
| AAGACCATTGTTGCGGAGTA+TGG | 0.392734 | 1_1:+77728288 | Msa0045770:CDS |
| GGGTCTTATTCTGCCTCAGC+TGG | 0.397243 | 1_1:-77728764 | None:intergenic |
| AAAATGAAAATACTGGTTCC+TGG | 0.404675 | 1_1:-77727708 | None:intergenic |
| ACCATGATAAATCATGCAAT+TGG | 0.417431 | 1_1:+77728237 | Msa0045770:CDS |
| AATGCTGCTGCAATTCAATA+TGG | 0.425708 | 1_1:+77727154 | Msa0045770:CDS |
| AATCATGCAATTGGAGCATC+AGG | 0.427555 | 1_1:+77728246 | Msa0045770:CDS |
| ACTATTGATGGTAAATCAAC+TGG | 0.428669 | 1_1:+77727963 | Msa0045770:CDS |
| TTGAGCCAAAATGAAAATAC+TGG | 0.442611 | 1_1:-77727715 | None:intergenic |
| GGAGTTTATTGAAGCAACTA+AGG | 0.448431 | 1_1:+77727352 | Msa0045770:intron |
| GATAAAATGCCTAGCCCAAT+GGG | 0.448737 | 1_1:+77728900 | Msa0045770:CDS |
| GTAATTTCCTTCACAATTGG+TGG | 0.451679 | 1_1:+77728963 | Msa0045770:CDS |
| TATGTGCCTGTGACAAGAAA+AGG | 0.458750 | 1_1:+77727817 | Msa0045770:CDS |
| TCCAATTGCATGATTTATCA+TGG | 0.459327 | 1_1:-77728238 | None:intergenic |
| AGGAAATCTGCTCCTACTAC+TGG | 0.467062 | 1_1:+77726474 | Msa0045770:CDS |
| TTTGATGGTATATTGGGACT+TGG | 0.470072 | 1_1:+77727404 | Msa0045770:CDS |
| ATAGGTTAGTATCTGATCTT+GGG | 0.472284 | 1_1:-77728784 | None:intergenic |
| GCTACTTCCATGCCAAATAC+AGG | 0.478041 | 1_1:+77726683 | Msa0045770:CDS |
| TGATTTCCCTTGTAGTGAGC+AGG | 0.478891 | 1_1:-77727790 | None:intergenic |
| TGCACTTCAGGAAGCAGTTG+AGG | 0.488684 | 1_1:+77729350 | Msa0045770:CDS |
| TTCTTGTTCTGCTTGTGAGA+TGG | 0.488794 | 1_1:+77728722 | Msa0045770:CDS |
| CTGTGACAAGAAAAGGATAT+TGG | 0.491953 | 1_1:+77727824 | Msa0045770:CDS |
| ATGGGAGATGTAACTATTGA+TGG | 0.494179 | 1_1:+77727951 | Msa0045770:CDS |
| TCAACAGATGATTCTCCCAT+TGG | 0.495110 | 1_1:-77728915 | None:intergenic |
| TAGCTATGACAATGTTAAAG+TGG | 0.497969 | 1_1:+77727201 | Msa0045770:CDS |
| GCTGCAATTCAATATGGTAC+TGG | 0.502280 | 1_1:+77727160 | Msa0045770:CDS |
| AAACCTCACTGTTACCGTCC+TGG | 0.505920 | 1_1:+77726507 | Msa0045770:CDS |
| GGATTTCAAGTGATATCAGT+TGG | 0.509267 | 1_1:+77727425 | Msa0045770:CDS |
| TGTTGATCCTGCTCACTACA+AGG | 0.512958 | 1_1:+77727783 | Msa0045770:CDS |
| AAATCATCTAGTGGTCTTCA+CGG | 0.514187 | 1_1:+77728696 | Msa0045770:CDS |
| TCCCAATATACCATCAAACT+TGG | 0.523032 | 1_1:-77727399 | None:intergenic |
| CAACAGATGATTCTCCCATT+GGG | 0.523189 | 1_1:-77728914 | None:intergenic |
| GATGATTCTCCCATTGGGCT+AGG | 0.532294 | 1_1:-77728909 | None:intergenic |
| GGGGACGTCATACCTCCTCT+GGG | 0.533369 | 1_1:-77729004 | None:intergenic |
| TGATAAAATGCCTAGCCCAA+TGG | 0.546047 | 1_1:+77728899 | Msa0045770:CDS |
| CAACCGTAAACCAGAGGAAG+AGG | 0.546465 | 1_1:+77727735 | Msa0045770:CDS |
| GTCATACCTCCTCTGGGGCA+AGG | 0.549507 | 1_1:-77728998 | None:intergenic |
| AGCTATGACAATGTTAAAGT+GGG | 0.550679 | 1_1:+77727202 | Msa0045770:CDS |
| GACAAGAAAAGGATATTGGC+AGG | 0.551662 | 1_1:+77727828 | Msa0045770:CDS |
| ATTGAAGCAACTAAGGAGCC+CGG | 0.555369 | 1_1:+77727359 | Msa0045770:CDS |
| TAAACCAGAGGAAGAGGAAG+GGG | 0.556917 | 1_1:+77727741 | Msa0045770:CDS |
| GTCCTGGAACCGTCGCACTT+CGG | 0.565588 | 1_1:+77726523 | Msa0045770:CDS |
| AGTTCTTCCACCAATTGTGA+AGG | 0.568138 | 1_1:-77728970 | None:intergenic |
| GGTTGAACAAGGTCTTATCC+AGG | 0.568523 | 1_1:+77727690 | Msa0045770:CDS |
| CGACATAGTTGTAAAGAACC+AGG | 0.576247 | 1_1:+77727225 | Msa0045770:CDS |
| CGTAAACCAGAGGAAGAGGA+AGG | 0.577422 | 1_1:+77727739 | Msa0045770:CDS |
| AACTTTCGACCTTGCCCCAG+AGG | 0.585854 | 1_1:+77728989 | Msa0045770:CDS |
| GTGTAGTGGACGAAAATGAA+AGG | 0.599522 | 1_1:+77728673 | Msa0045770:CDS |
| TGGTGGACCTGTATTTGGCA+TGG | 0.600925 | 1_1:-77726690 | None:intergenic |
| ACGAAATTACCGAAGTGCGA+CGG | 0.610470 | 1_1:-77726532 | None:intergenic |
| TTTGGATGCAGAACCAGCTG+AGG | 0.615653 | 1_1:+77728751 | Msa0045770:CDS |
| TTTCGACCTTGCCCCAGAGG+AGG | 0.620864 | 1_1:+77728992 | Msa0045770:CDS |
| AAATCTGCTCCTACTACTGG+AGG | 0.621448 | 1_1:+77726477 | Msa0045770:CDS |
| TTGTCCATACTCCGCAACAA+TGG | 0.630745 | 1_1:-77728292 | None:intergenic |
| GTTGATCCTGCTCACTACAA+GGG | 0.635225 | 1_1:+77727784 | Msa0045770:CDS |
| AATGAAAGGAAATCATCTAG+TGG | 0.646020 | 1_1:+77728687 | Msa0045770:CDS |
| GTAAACCAGAGGAAGAGGAA+GGG | 0.670861 | 1_1:+77727740 | Msa0045770:CDS |
| AGGTATAATATGGTTGAACA+AGG | 0.671510 | 1_1:+77727679 | Msa0045770:intron |
| AAACCAGAGGAAGAGGAAGG+GGG | 0.675176 | 1_1:+77727742 | Msa0045770:CDS |
| TTGGCTCAACCGTAAACCAG+AGG | 0.676669 | 1_1:+77727729 | Msa0045770:CDS |
| CCTGAAGTGCAAGAACTGCG+TGG | 0.678326 | 1_1:-77729338 | None:intergenic |
| GAAGTGCGACGGTTCCAGGA+CGG | 0.701371 | 1_1:-77726521 | None:intergenic |
| AGAGTGCAAGACCATTGTTG+CGG | 0.713066 | 1_1:+77728281 | Msa0045770:CDS |
| GTTCCAGGACGGTAACAGTG+AGG | 0.713376 | 1_1:-77726510 | None:intergenic |
| GGGACGTCATACCTCCTCTG+GGG | 0.727640 | 1_1:-77729003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAATAAATTTTTAACAAAAA+AGG | - | chr1_1:77727625-77727644 | None:intergenic | 10.0% |
| !! | AAGGATATAAAAATATAATT+GGG | - | chr1_1:77728546-77728565 | None:intergenic | 10.0% |
| !! | AAAGGATATAAAAATATAAT+TGG | - | chr1_1:77728547-77728566 | None:intergenic | 10.0% |
| !! | AAAATTATAATTCTTAAGAT+CGG | + | chr1_1:77729109-77729128 | Msa0045770:intron | 10.0% |
| !!! | ATTTTGGATTCATAATTTTT+AGG | + | chr1_1:77726595-77726614 | Msa0045770:intron | 15.0% |
| !!! | TTATAGTATAAGATTTTTCT+TGG | + | chr1_1:77727111-77727130 | Msa0045770:intron | 15.0% |
| !!! | GTATGTTTACTTTTAAATTT+TGG | + | chr1_1:77727466-77727485 | Msa0045770:intron | 15.0% |
| !! | AAATAAAAAAGTAGAGAAAA+AGG | - | chr1_1:77727909-77727928 | None:intergenic | 15.0% |
| !!! | TTTATTTTTTCAGTTTGATA+TGG | + | chr1_1:77727932-77727951 | Msa0045770:intron | 15.0% |
| !!! | TTATTTTTTCAGTTTGATAT+GGG | + | chr1_1:77727933-77727952 | Msa0045770:intron | 15.0% |
| !! | TTAAATTTCTAACTGAAAAA+AGG | + | chr1_1:77728148-77728167 | Msa0045770:intron | 15.0% |
| !!! | TTTTCATAGCATAAAATAAT+CGG | - | chr1_1:77729064-77729083 | None:intergenic | 15.0% |
| !! | TCTGAAAACCTAAAAAATTA+GGG | - | chr1_1:77726562-77726581 | None:intergenic | 20.0% |
| !!! | AGAGTTTTGAATTTGAATTT+TGG | + | chr1_1:77726579-77726598 | Msa0045770:intron | 20.0% |
| !!! | TTTTAGGAATTTTGAATTTG+CGG | + | chr1_1:77726611-77726630 | Msa0045770:intron | 20.0% |
| !!! | AAATGCTTTTACAATTAGTT+TGG | + | chr1_1:77726927-77726946 | Msa0045770:intron | 20.0% |
| !!! | TGACATATTGTAATTTGTTT+TGG | + | chr1_1:77726993-77727012 | Msa0045770:intron | 20.0% |
| !!! | TTCTTATGTTCTTCTATTTT+CGG | + | chr1_1:77727045-77727064 | Msa0045770:intron | 20.0% |
| !! | AAAAAAGATCAATACAAGTA+TGG | - | chr1_1:77727884-77727903 | None:intergenic | 20.0% |
| !!! | TTTTATATCCTTTGAATCTT+TGG | + | chr1_1:77728554-77728573 | Msa0045770:intron | 20.0% |
| !!! | TTTGATATTGTTGTTATAGA+CGG | + | chr1_1:77729299-77729318 | Msa0045770:intron | 20.0% |
| ! | CTGAAAACCTAAAAAATTAG+GGG | - | chr1_1:77726561-77726580 | None:intergenic | 25.0% |
| !! | CTCTGAAAACCTAAAAAATT+AGG | - | chr1_1:77726563-77726582 | None:intergenic | 25.0% |
| !! | ATTTGCGGTTTATGATTTTT+AGG | + | chr1_1:77726626-77726645 | Msa0045770:intron | 25.0% |
| !!! | GTTTTCGTTGTTGTTAATTT+TGG | + | chr1_1:77726648-77726667 | Msa0045770:intron | 25.0% |
| ! | TTTCCTGTAAGTATTTGATT+TGG | - | chr1_1:77726713-77726732 | None:intergenic | 25.0% |
| ! | TCAAATACTTACAGGAAAAA+TGG | + | chr1_1:77726715-77726734 | Msa0045770:intron | 25.0% |
| !! | TCTTTTATGTCAATAAAGGA+TGG | + | chr1_1:77727266-77727285 | Msa0045770:intron | 25.0% |
| ! | TGTATCTTTCATAGTATGTT+CGG | + | chr1_1:77727297-77727316 | Msa0045770:intron | 25.0% |
| ! | ATAAACTCCTGATAGTAAAA+AGG | - | chr1_1:77727341-77727360 | None:intergenic | 25.0% |
| !!! | TTTGGTTCATCATTTTGTTA+CGG | + | chr1_1:77727484-77727503 | Msa0045770:intron | 25.0% |
| !!! | GTACCATTTGTAATTTTTTC+TGG | + | chr1_1:77728346-77728365 | Msa0045770:intron | 25.0% |
| ! | ATGCCAGAAAAAATTACAAA+TGG | - | chr1_1:77728352-77728371 | None:intergenic | 25.0% |
| !!! | TAATTTTTTCTGGCATATCT+TGG | + | chr1_1:77728356-77728375 | Msa0045770:intron | 25.0% |
| !! | AAAAGTGCATAATCCAATTT+CGG | - | chr1_1:77728497-77728516 | None:intergenic | 25.0% |
| ! | TAAGTGGAAAAATTAGAAGA+CGG | - | chr1_1:77728638-77728657 | None:intergenic | 25.0% |
| ! | CTAACTCACATTATTGATAT+AGG | - | chr1_1:77728805-77728824 | None:intergenic | 25.0% |
| ! | TCGTTTTCCCCTAATTTTTT+AGG | + | chr1_1:77726551-77726570 | Msa0045770:intron | 30.0% |
| !! | TCTAAATTTGTTGTGTTCTG+TGG | + | chr1_1:77726832-77726851 | Msa0045770:intron | 30.0% |
| CTTTCCCAAAAATTGAAACA+GGG | + | chr1_1:77726882-77726901 | Msa0045770:intron | 30.0% | |
| ! | TTCACCCTGTTTCAATTTTT+GGG | - | chr1_1:77726889-77726908 | None:intergenic | 30.0% |
| AGTAATTGCCAATAACCAAA+GGG | - | chr1_1:77726967-77726986 | None:intergenic | 30.0% | |
| TAGTAATTGCCAATAACCAA+AGG | - | chr1_1:77726968-77726987 | None:intergenic | 30.0% | |
| ! | TTGATATTTTGCATCTGTCA+AGG | + | chr1_1:77727073-77727092 | Msa0045770:intron | 30.0% |
| ! | TGATATTTTGCATCTGTCAA+GGG | + | chr1_1:77727074-77727093 | Msa0045770:intron | 30.0% |
| TAGCTATGACAATGTTAAAG+TGG | + | chr1_1:77727201-77727220 | Msa0045770:CDS | 30.0% | |
| AGCTATGACAATGTTAAAGT+GGG | + | chr1_1:77727202-77727221 | Msa0045770:CDS | 30.0% | |
| ! | GGTGTCTTTTATGTCAATAA+AGG | + | chr1_1:77727262-77727281 | Msa0045770:intron | 30.0% |
| TAAAAGTAAACATACCACAC+TGG | - | chr1_1:77727461-77727480 | None:intergenic | 30.0% | |
| TTTAACAAAAAAGGGAAGCT+TGG | - | chr1_1:77727616-77727635 | None:intergenic | 30.0% | |
| CAAATTCTGATAATCACATG+GGG | - | chr1_1:77727651-77727670 | None:intergenic | 30.0% | |
| GCAAATTCTGATAATCACAT+GGG | - | chr1_1:77727652-77727671 | None:intergenic | 30.0% | |
| AGGTATAATATGGTTGAACA+AGG | + | chr1_1:77727679-77727698 | Msa0045770:intron | 30.0% | |
| !! | AAAATGAAAATACTGGTTCC+TGG | - | chr1_1:77727711-77727730 | None:intergenic | 30.0% |
| ! | AGGAACCAGTATTTTCATTT+TGG | + | chr1_1:77727710-77727729 | Msa0045770:CDS | 30.0% |
| TTGAGCCAAAATGAAAATAC+TGG | - | chr1_1:77727718-77727737 | None:intergenic | 30.0% | |
| ! | ACTATTGATGGTAAATCAAC+TGG | + | chr1_1:77727963-77727982 | Msa0045770:CDS | 30.0% |
| CAATTTATAAAATCTCTGCG+AGG | - | chr1_1:77728029-77728048 | None:intergenic | 30.0% | |
| ! | CTCGCAGAGATTTTATAAAT+TGG | + | chr1_1:77728027-77728046 | Msa0045770:intron | 30.0% |
| !! | GGTCTTAGCTTTAATTTCAT+TGG | + | chr1_1:77728048-77728067 | Msa0045770:intron | 30.0% |
| ACCATGATAAATCATGCAAT+TGG | + | chr1_1:77728237-77728256 | Msa0045770:CDS | 30.0% | |
| TCCAATTGCATGATTTATCA+TGG | - | chr1_1:77728241-77728260 | None:intergenic | 30.0% | |
| GTTGATTAGATTGTTACCTA+TGG | + | chr1_1:77728378-77728397 | Msa0045770:intron | 30.0% | |
| !! | GAAGAAAGGTTCTTTTAGAA+TGG | + | chr1_1:77728418-77728437 | Msa0045770:intron | 30.0% |
| ! | ATTGGATTATGCACTTTTGA+TGG | + | chr1_1:77728499-77728518 | Msa0045770:CDS | 30.0% |
| AATGAAAGGAAATCATCTAG+TGG | + | chr1_1:77728687-77728706 | Msa0045770:CDS | 30.0% | |
| ATAGGTTAGTATCTGATCTT+GGG | - | chr1_1:77728787-77728806 | None:intergenic | 30.0% | |
| TATAGGTTAGTATCTGATCT+TGG | - | chr1_1:77728788-77728807 | None:intergenic | 30.0% | |
| TAAGAATCAAGAGATGAAAC+AGG | - | chr1_1:77728854-77728873 | None:intergenic | 30.0% | |
| AAAAGCAATCAATCAGATGT+GGG | - | chr1_1:77729027-77729046 | None:intergenic | 30.0% | |
| !! | TATGATTAATTTGCAGACAC+TGG | - | chr1_1:77729211-77729230 | None:intergenic | 30.0% |
| !! | TTATATCATTTTCTAGCCCA+GGG | - | chr1_1:77729260-77729279 | None:intergenic | 30.0% |
| !! | GTTGTTGTTAATTTTGGTGC+AGG | + | chr1_1:77726654-77726673 | Msa0045770:intron | 35.0% |
| !! | CCTGTAAGTATTTGATTTGG+TGG | - | chr1_1:77726710-77726729 | None:intergenic | 35.0% |
| CCACCAAATCAAATACTTAC+AGG | + | chr1_1:77726707-77726726 | Msa0045770:intron | 35.0% | |
| !! | CCTGTTTCAATTTTTGGGAA+AGG | - | chr1_1:77726884-77726903 | None:intergenic | 35.0% |
| CCTTTCCCAAAAATTGAAAC+AGG | + | chr1_1:77726881-77726900 | Msa0045770:intron | 35.0% | |
| ! | CTTCACCCTGTTTCAATTTT+TGG | - | chr1_1:77726890-77726909 | None:intergenic | 35.0% |
| AATGCTGCTGCAATTCAATA+TGG | + | chr1_1:77727154-77727173 | Msa0045770:CDS | 35.0% | |
| !! | GATAGTAAAAAGGTGCTATG+TGG | - | chr1_1:77727331-77727350 | None:intergenic | 35.0% |
| ! | CATAGCACCTTTTTACTATC+AGG | + | chr1_1:77727331-77727350 | Msa0045770:intron | 35.0% |
| GGAGTTTATTGAAGCAACTA+AGG | + | chr1_1:77727352-77727371 | Msa0045770:intron | 35.0% | |
| ! | GCCAAGTTTGATGGTATATT+GGG | + | chr1_1:77727398-77727417 | Msa0045770:CDS | 35.0% |
| TCCCAATATACCATCAAACT+TGG | - | chr1_1:77727402-77727421 | None:intergenic | 35.0% | |
| ! | TTTGATGGTATATTGGGACT+TGG | + | chr1_1:77727404-77727423 | Msa0045770:CDS | 35.0% |
| ! | GGATTTCAAGTGATATCAGT+TGG | + | chr1_1:77727425-77727444 | Msa0045770:CDS | 35.0% |
| CGCAAATTCTGATAATCACA+TGG | - | chr1_1:77727653-77727672 | None:intergenic | 35.0% | |
| ! | CAATATCCTTTTCTTGTCAC+AGG | - | chr1_1:77727826-77727845 | None:intergenic | 35.0% |
| CTGTGACAAGAAAAGGATAT+TGG | + | chr1_1:77727824-77727843 | Msa0045770:CDS | 35.0% | |
| ATGGGAGATGTAACTATTGA+TGG | + | chr1_1:77727951-77727970 | Msa0045770:CDS | 35.0% | |
| TCTCTGCGAGGAAAATAAAT+TGG | - | chr1_1:77728017-77728036 | None:intergenic | 35.0% | |
| TGAGTCGTATGTTAGAAGAA+AGG | + | chr1_1:77728404-77728423 | Msa0045770:intron | 35.0% | |
| ! | TGCTTTTCCTTTACTCCTTT+AGG | + | chr1_1:77728450-77728469 | Msa0045770:intron | 35.0% |
| ATTTCGGAACAGATCTTCTT+TGG | - | chr1_1:77728481-77728500 | None:intergenic | 35.0% | |
| AAGAAGATCTGTTCCGAAAT+TGG | + | chr1_1:77728481-77728500 | Msa0045770:CDS | 35.0% | |
| TTCGATGACCAAAGATTCAA+AGG | - | chr1_1:77728565-77728584 | None:intergenic | 35.0% | |
| CTCTCGATAGAAAAACTAAG+TGG | - | chr1_1:77728654-77728673 | None:intergenic | 35.0% | |
| !! | TTTTTCTATCGAGAGTGTAG+TGG | + | chr1_1:77728659-77728678 | Msa0045770:CDS | 35.0% |
| AAATCATCTAGTGGTCTTCA+CGG | + | chr1_1:77728696-77728715 | Msa0045770:CDS | 35.0% | |
| AAACAGGAAACTCAAATAGC+AGG | - | chr1_1:77728838-77728857 | None:intergenic | 35.0% | |
| CCAATTGTGAAGGAAATTAC+AGG | - | chr1_1:77728963-77728982 | None:intergenic | 35.0% | |
| CCTGTAATTTCCTTCACAAT+TGG | + | chr1_1:77728960-77728979 | Msa0045770:CDS | 35.0% | |
| GTAATTTCCTTCACAATTGG+TGG | + | chr1_1:77728963-77728982 | Msa0045770:CDS | 35.0% | |
| AAAGCAATCAATCAGATGTG+GGG | - | chr1_1:77729026-77729045 | None:intergenic | 35.0% | |
| CAAAAGCAATCAATCAGATG+TGG | - | chr1_1:77729028-77729047 | None:intergenic | 35.0% | |
| !! | TTGATTGCTTTTGCAATGAC+CGG | + | chr1_1:77729035-77729054 | Msa0045770:intron | 35.0% |
| AGCATAAAATAATCGGTGAC+CGG | - | chr1_1:77729057-77729076 | None:intergenic | 35.0% | |
| ATTCTTAAGATCGGAGAACT+AGG | + | chr1_1:77729118-77729137 | Msa0045770:intron | 35.0% | |
| !! | GTTATATCATTTTCTAGCCC+AGG | - | chr1_1:77729261-77729280 | None:intergenic | 35.0% |
| !!! | CTTTTTTCGTTCATGCTGCT+AGG | + | chr1_1:77726454-77726473 | Msa0045770:CDS | 40.0% |
| ! | TTTTTCACTCCTCCAGTAGT+AGG | - | chr1_1:77726489-77726508 | None:intergenic | 40.0% |
| !! | TGATTTGGTGGACCTGTATT+TGG | - | chr1_1:77726698-77726717 | None:intergenic | 40.0% |
| GAATTCTACCATTCACCCTT+TGG | + | chr1_1:77726949-77726968 | Msa0045770:intron | 40.0% | |
| ACCATTCACCCTTTGGTTAT+TGG | + | chr1_1:77726956-77726975 | Msa0045770:intron | 40.0% | |
| ! | TTGGTTTCGTGCTGTTAACT+AGG | + | chr1_1:77727130-77727149 | Msa0045770:intron | 40.0% |
| ! | TGGTTTCGTGCTGTTAACTA+GGG | + | chr1_1:77727131-77727150 | Msa0045770:intron | 40.0% |
| GCTGCAATTCAATATGGTAC+TGG | + | chr1_1:77727160-77727179 | Msa0045770:CDS | 40.0% | |
| ! | TATGGTACTGGAGCAATTTC+TGG | + | chr1_1:77727172-77727191 | Msa0045770:CDS | 40.0% |
| CGACATAGTTGTAAAGAACC+AGG | + | chr1_1:77727225-77727244 | Msa0045770:CDS | 40.0% | |
| AACCAGGTAATGCTGATCAT+TGG | + | chr1_1:77727241-77727260 | Msa0045770:intron | 40.0% | |
| ATCAAACTTGGCCACCAAAA+AGG | - | chr1_1:77727390-77727409 | None:intergenic | 40.0% | |
| !! | TTTTTGGTGGCCAAGTTTGA+TGG | + | chr1_1:77727389-77727408 | Msa0045770:CDS | 40.0% |
| ! | GGCCAAGTTTGATGGTATAT+TGG | + | chr1_1:77727397-77727416 | Msa0045770:CDS | 40.0% |
| TTCATTGTAGACTCACTCAG+TGG | + | chr1_1:77727545-77727564 | Msa0045770:intron | 40.0% | |
| TATCAGAATTTGCGTGTCAC+AGG | + | chr1_1:77727659-77727678 | Msa0045770:intron | 40.0% | |
| TGCGTGTCACAGGTATAATA+TGG | + | chr1_1:77727669-77727688 | Msa0045770:intron | 40.0% | |
| TATGTGCCTGTGACAAGAAA+AGG | + | chr1_1:77727817-77727836 | Msa0045770:CDS | 40.0% | |
| GACAAGAAAAGGATATTGGC+AGG | + | chr1_1:77727828-77727847 | Msa0045770:CDS | 40.0% | |
| ! | GTTTGACGTGCTTTTAATCC+AGG | + | chr1_1:77728070-77728089 | Msa0045770:intron | 40.0% |
| AATCCAGGATATTGCGTTGA+TGG | + | chr1_1:77728085-77728104 | Msa0045770:intron | 40.0% | |
| !! | ATATTGCGTTGATGGCTGTT+CGG | + | chr1_1:77728093-77728112 | Msa0045770:intron | 40.0% |
| GACTTGGGAACATCTTTGTA+TGG | + | chr1_1:77728124-77728143 | Msa0045770:intron | 40.0% | |
| ! | AATCATGCAATTGGAGCATC+AGG | + | chr1_1:77728246-77728265 | Msa0045770:CDS | 40.0% |
| AACATACGACTCATGACCAT+AGG | - | chr1_1:77728397-77728416 | None:intergenic | 40.0% | |
| !! | GTGTAGTGGACGAAAATGAA+AGG | + | chr1_1:77728673-77728692 | Msa0045770:CDS | 40.0% |
| TTCTTGTTCTGCTTGTGAGA+TGG | + | chr1_1:77728722-77728741 | Msa0045770:CDS | 40.0% | |
| TGATAAAATGCCTAGCCCAA+TGG | + | chr1_1:77728899-77728918 | Msa0045770:CDS | 40.0% | |
| GATAAAATGCCTAGCCCAAT+GGG | + | chr1_1:77728900-77728919 | Msa0045770:CDS | 40.0% | |
| CAACAGATGATTCTCCCATT+GGG | - | chr1_1:77728917-77728936 | None:intergenic | 40.0% | |
| TCAACAGATGATTCTCCCAT+TGG | - | chr1_1:77728918-77728937 | None:intergenic | 40.0% | |
| AGTTCTTCCACCAATTGTGA+AGG | - | chr1_1:77728973-77728992 | None:intergenic | 40.0% | |
| !!! | GGAAAGCTTTTTTCAGCTAG+TGG | - | chr1_1:77729190-77729209 | None:intergenic | 40.0% |
| ! | GAAGCAGTTGAGGCTTATTT+TGG | + | chr1_1:77729360-77729379 | Msa0045770:CDS | 40.0% |
| AGGAAATCTGCTCCTACTAC+TGG | + | chr1_1:77726474-77726493 | Msa0045770:CDS | 45.0% | |
| AAATCTGCTCCTACTACTGG+AGG | + | chr1_1:77726477-77726496 | Msa0045770:CDS | 45.0% | |
| ACGAAATTACCGAAGTGCGA+CGG | - | chr1_1:77726535-77726554 | None:intergenic | 45.0% | |
| GCTACTTCCATGCCAAATAC+AGG | + | chr1_1:77726683-77726702 | Msa0045770:CDS | 45.0% | |
| GCCAATAACCAAAGGGTGAA+TGG | - | chr1_1:77726960-77726979 | None:intergenic | 45.0% | |
| CACCAATGATCAGCATTACC+TGG | - | chr1_1:77727246-77727265 | None:intergenic | 45.0% | |
| ATTGAAGCAACTAAGGAGCC+CGG | + | chr1_1:77727359-77727378 | Msa0045770:CDS | 45.0% | |
| TTGGAAATGCTGTTCCAGTG+TGG | + | chr1_1:77727444-77727463 | Msa0045770:intron | 45.0% | |
| ATGACTGCCTTGCAAATGCT+TGG | + | chr1_1:77727516-77727535 | Msa0045770:intron | 45.0% | |
| AACCTTGCCAAGCATTTGCA+AGG | - | chr1_1:77727526-77727545 | None:intergenic | 45.0% | |
| CTATGAACGGGTCTACAGAA+GGG | - | chr1_1:77727577-77727596 | None:intergenic | 45.0% | |
| ACTATGAACGGGTCTACAGA+AGG | - | chr1_1:77727578-77727597 | None:intergenic | 45.0% | |
| TTCTGTAGACCCGTTCATAG+TGG | + | chr1_1:77727577-77727596 | Msa0045770:intron | 45.0% | |
| TGTAAGGCTGCCACTATGAA+CGG | - | chr1_1:77727590-77727609 | None:intergenic | 45.0% | |
| ! | GGTTGAACAAGGTCTTATCC+AGG | + | chr1_1:77727690-77727709 | Msa0045770:CDS | 45.0% |
| ! | CTTCCTCTTCCTCTGGTTTA+CGG | - | chr1_1:77727741-77727760 | None:intergenic | 45.0% |
| GTAAACCAGAGGAAGAGGAA+GGG | + | chr1_1:77727740-77727759 | Msa0045770:CDS | 45.0% | |
| TAAACCAGAGGAAGAGGAAG+GGG | + | chr1_1:77727741-77727760 | Msa0045770:CDS | 45.0% | |
| ! | GAAGGGGGTGAGATTGTTTT+CGG | + | chr1_1:77727757-77727776 | Msa0045770:CDS | 45.0% |
| TGTTGATCCTGCTCACTACA+AGG | + | chr1_1:77727783-77727802 | Msa0045770:CDS | 45.0% | |
| GTTGATCCTGCTCACTACAA+GGG | + | chr1_1:77727784-77727803 | Msa0045770:CDS | 45.0% | |
| TGATTTCCCTTGTAGTGAGC+AGG | - | chr1_1:77727793-77727812 | None:intergenic | 45.0% | |
| !! | TGTTCGGCAATTGCTGACTT+GGG | + | chr1_1:77728109-77728128 | Msa0045770:intron | 45.0% |
| AGAGTGCAAGACCATTGTTG+CGG | + | chr1_1:77728281-77728300 | Msa0045770:CDS | 45.0% | |
| AAGACCATTGTTGCGGAGTA+TGG | + | chr1_1:77728288-77728307 | Msa0045770:CDS | 45.0% | |
| TTGTCCATACTCCGCAACAA+TGG | - | chr1_1:77728295-77728314 | None:intergenic | 45.0% | |
| TCTTCTTTGGCTGTGCCTAA+AGG | - | chr1_1:77728468-77728487 | None:intergenic | 45.0% | |
| CTTGTGAGATGGCAGTTGTT+TGG | + | chr1_1:77728733-77728752 | Msa0045770:CDS | 45.0% | |
| !!! | AATAAATTTTTAACAAAAAA+GGG | - | chr1_1:77727624-77727643 | None:intergenic | 5.0% |
| AAACCTCACTGTTACCGTCC+TGG | + | chr1_1:77726507-77726526 | Msa0045770:CDS | 50.0% | |
| ! | TGGTGGACCTGTATTTGGCA+TGG | - | chr1_1:77726693-77726712 | None:intergenic | 50.0% |
| GCCACCAAAAAGGTAACACC+GGG | - | chr1_1:77727380-77727399 | None:intergenic | 50.0% | |
| GGCCACCAAAAAGGTAACAC+CGG | - | chr1_1:77727381-77727400 | None:intergenic | 50.0% | |
| TGCCTTGCAAATGCTTGGCA+AGG | + | chr1_1:77727521-77727540 | Msa0045770:intron | 50.0% | |
| GTAAGGCTGCCACTATGAAC+GGG | - | chr1_1:77727589-77727608 | None:intergenic | 50.0% | |
| AAGGGAAGCTTGGAGCTGTA+AGG | - | chr1_1:77727606-77727625 | None:intergenic | 50.0% | |
| TTGGCTCAACCGTAAACCAG+AGG | + | chr1_1:77727729-77727748 | Msa0045770:CDS | 50.0% | |
| CAACCGTAAACCAGAGGAAG+AGG | + | chr1_1:77727735-77727754 | Msa0045770:CDS | 50.0% | |
| CGTAAACCAGAGGAAGAGGA+AGG | + | chr1_1:77727739-77727758 | Msa0045770:CDS | 50.0% | |
| AAACCAGAGGAAGAGGAAGG+GGG | + | chr1_1:77727742-77727761 | Msa0045770:CDS | 50.0% | |
| CAGCCATCAACGCAATATCC+TGG | - | chr1_1:77728091-77728110 | None:intergenic | 50.0% | |
| ! | CTGTTCGGCAATTGCTGACT+TGG | + | chr1_1:77728108-77728127 | Msa0045770:intron | 50.0% |
| GGCTGTGCCTAAAGGAGTAA+AGG | - | chr1_1:77728460-77728479 | None:intergenic | 50.0% | |
| !! | TGCACTTTTGATGGCACTCG+TGG | + | chr1_1:77728508-77728527 | Msa0045770:CDS | 50.0% |
| TTTGGATGCAGAACCAGCTG+AGG | + | chr1_1:77728751-77728770 | Msa0045770:CDS | 50.0% | |
| GATGATTCTCCCATTGGGCT+AGG | - | chr1_1:77728912-77728931 | None:intergenic | 50.0% | |
| TGCACTTCAGGAAGCAGTTG+AGG | + | chr1_1:77729350-77729369 | Msa0045770:CDS | 50.0% | |
| GTTCCAGGACGGTAACAGTG+AGG | - | chr1_1:77726513-77726532 | None:intergenic | 55.0% | |
| !!! | GGAGCCCGGTGTTACCTTTT+TGG | + | chr1_1:77727373-77727392 | Msa0045770:CDS | 55.0% |
| !!! | GCCCGGTGTTACCTTTTTGG+TGG | + | chr1_1:77727376-77727395 | Msa0045770:CDS | 55.0% |
| ! | GGGGGTGAGATTGTTTTCGG+TGG | + | chr1_1:77727760-77727779 | Msa0045770:CDS | 55.0% |
| ! | GGCACTCGTGGTGTTGAGTA+AGG | + | chr1_1:77728520-77728539 | Msa0045770:intron | 55.0% |
| !! | GGGTCTTATTCTGCCTCAGC+TGG | - | chr1_1:77728767-77728786 | None:intergenic | 55.0% |
| AACTTTCGACCTTGCCCCAG+AGG | + | chr1_1:77728989-77729008 | Msa0045770:CDS | 55.0% | |
| AACTACTCCCAGAGACACCC+TGG | + | chr1_1:77729240-77729259 | Msa0045770:intron | 55.0% | |
| ACTACTCCCAGAGACACCCT+GGG | + | chr1_1:77729241-77729260 | Msa0045770:intron | 55.0% | |
| ! | TTCTAGCCCAGGGTGTCTCT+GGG | - | chr1_1:77729250-77729269 | None:intergenic | 55.0% |
| ! | TTTCTAGCCCAGGGTGTCTC+TGG | - | chr1_1:77729251-77729270 | None:intergenic | 55.0% |
| CCTGAAGTGCAAGAACTGCG+TGG | - | chr1_1:77729341-77729360 | None:intergenic | 55.0% | |
| CCACGCAGTTCTTGCACTTC+AGG | + | chr1_1:77729338-77729357 | Msa0045770:CDS | 55.0% | |
| GAAGTGCGACGGTTCCAGGA+CGG | - | chr1_1:77726524-77726543 | None:intergenic | 60.0% | |
| GTCCTGGAACCGTCGCACTT+CGG | + | chr1_1:77726523-77726542 | Msa0045770:CDS | 60.0% | |
| TACCGAAGTGCGACGGTTCC+AGG | - | chr1_1:77726528-77726547 | None:intergenic | 60.0% | |
| TCACCCCCTTCCTCTTCCTC+TGG | - | chr1_1:77727748-77727767 | None:intergenic | 60.0% | |
| TTTCGACCTTGCCCCAGAGG+AGG | + | chr1_1:77728992-77729011 | Msa0045770:CDS | 60.0% | |
| !! | GTCATACCTCCTCTGGGGCA+AGG | - | chr1_1:77729001-77729020 | None:intergenic | 60.0% |
| GGGACGTCATACCTCCTCTG+GGG | - | chr1_1:77729006-77729025 | None:intergenic | 60.0% | |
| GGGGACGTCATACCTCCTCT+GGG | - | chr1_1:77729007-77729026 | None:intergenic | 60.0% | |
| TGGGGACGTCATACCTCCTC+TGG | - | chr1_1:77729008-77729027 | None:intergenic | 60.0% | |
| GTGCAAGAACTGCGTGGCTC+TGG | - | chr1_1:77729335-77729354 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 77726411 | 77729389 | 77726411 | ID=Msa0045770;Name=Msa0045770 |
| chr1_1 | mRNA | 77726411 | 77729389 | 77726411 | ID=Msa0045770-mRNA-1;Parent=Msa0045770;Name=Msa0045770-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.09|0.08|0.83|0.63|0.83|12|0|370 |
| chr1_1 | exon | 77726411 | 77726544 | 77726411 | ID=Msa0045770-mRNA-1:exon:26614;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77726676 | 77726704 | 77726676 | ID=Msa0045770-mRNA-1:exon:26615;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77727152 | 77727246 | 77727152 | ID=Msa0045770-mRNA-1:exon:26616;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77727353 | 77727462 | 77727353 | ID=Msa0045770-mRNA-1:exon:26617;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77727681 | 77727849 | 77727681 | ID=Msa0045770-mRNA-1:exon:26618;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77727945 | 77727984 | 77727945 | ID=Msa0045770-mRNA-1:exon:26619;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77728092 | 77728099 | 77728092 | ID=Msa0045770-mRNA-1:exon:26620;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77728228 | 77728341 | 77728228 | ID=Msa0045770-mRNA-1:exon:26621;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77728472 | 77728536 | 77728472 | ID=Msa0045770-mRNA-1:exon:26622;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77728659 | 77728815 | 77728659 | ID=Msa0045770-mRNA-1:exon:26623;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77728894 | 77729013 | 77728894 | ID=Msa0045770-mRNA-1:exon:26624;Parent=Msa0045770-mRNA-1 |
| chr1_1 | exon | 77729318 | 77729389 | 77729318 | ID=Msa0045770-mRNA-1:exon:26625;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77726411 | 77726544 | 77726411 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77726676 | 77726704 | 77726676 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77727152 | 77727246 | 77727152 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77727353 | 77727462 | 77727353 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77727681 | 77727849 | 77727681 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77727945 | 77727984 | 77727945 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77728092 | 77728099 | 77728092 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77728228 | 77728341 | 77728228 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77728472 | 77728536 | 77728472 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77728659 | 77728815 | 77728659 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77728894 | 77729013 | 77728894 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| chr1_1 | CDS | 77729318 | 77729389 | 77729318 | ID=Msa0045770-mRNA-1:cds;Parent=Msa0045770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
