AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1409730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409730 MtrunA17_Chr4g0075181 86.527 334 18 3 41 347 130 463 0.0 573
Msa1409730 MtrunA17_Chr2g0288851 67.593 324 84 3 48 351 135 457 4.85e-154 443
Msa1409730 MtrunA17_Chr1g0193211 52.381 336 138 4 36 351 122 455 1.16e-115 345
Msa1409730 MtrunA17_Chr7g0271351 52.366 317 130 3 55 351 136 451 6.10e-112 335
Msa1409730 MtrunA17_Chr4g0069631 44.083 338 168 3 36 353 110 446 9.27e-103 312
Msa1409730 MtrunA17_Chr2g0302421 43.787 338 164 3 37 354 118 449 2.78e-96 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1409730 AT1G11910.1 67.385 325 86 2 47 351 129 453 5.08e-161 461
Msa1409730 AT1G11910.2 67.385 325 86 2 47 351 140 464 9.71e-161 461
Msa1409730 AT1G62290.6 65.421 321 91 2 47 347 136 456 1.66e-156 448
Msa1409730 AT1G62290.4 65.421 321 91 2 47 347 136 456 1.66e-156 448
Msa1409730 AT1G62290.5 64.923 325 94 2 47 351 136 460 2.95e-156 448
Msa1409730 AT1G62290.1 64.923 325 94 2 47 351 136 460 8.30e-156 448
Msa1409730 AT1G62290.2 64.923 325 94 2 47 351 136 460 8.30e-156 448
Msa1409730 AT4G04460.1 60.436 321 104 3 47 347 134 451 1.75e-141 412
Msa1409730 AT4G04460.2 59.813 321 102 4 47 347 134 447 1.58e-137 401
Msa1409730 AT1G62290.3 65.248 282 78 2 47 308 136 417 2.37e-133 388
Msa1409730 AT4G22050.1 44.521 146 75 5 55 196 100 243 2.28e-26 108
Msa1409730 AT1G69100.2 38.514 148 83 5 55 195 110 256 2.09e-24 103
Msa1409730 AT1G69100.1 38.514 148 83 5 55 195 102 248 2.44e-24 103

Find 84 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTACTGGAGCAATTTC+TGG 0.182146 tig0023536:-64726 Msa1409730:CDS
AAGAAGATCTGTTCCGAAAT+TGG 0.186128 tig0023536:-63417 Msa1409730:CDS
GAAGCAGTTGAGGCTTATTT+TGG 0.193569 tig0023536:-62538 Msa1409730:CDS
TGATTTGGTGGACCTGTATT+TGG 0.271444 tig0023536:+65203 None:intergenic
ATTTCGGAACAGATCTTCTT+TGG 0.285471 tig0023536:+63420 None:intergenic
CTTCCTCTTCCTCTGGTTTA+CGG 0.290155 tig0023536:+64160 None:intergenic
CCACGCAGTTCTTGCACTTC+AGG 0.291795 tig0023536:-62560 Msa1409730:CDS
ATCAAACTTGGCCACCAAAA+AGG 0.312300 tig0023536:+64511 None:intergenic
GGCCAAGTTTGATGGTATAT+TGG 0.314506 tig0023536:-64501 Msa1409730:CDS
TACCGAAGTGCGACGGTTCC+AGG 0.319747 tig0023536:+65373 None:intergenic
CTAACTCACATTATTGATAT+AGG 0.336786 tig0023536:+63096 None:intergenic
CCTGTAATTTCCTTCACAAT+TGG 0.350996 tig0023536:-62938 Msa1409730:CDS
GCCAAGTTTGATGGTATATT+GGG 0.353483 tig0023536:-64500 Msa1409730:CDS
AAAAGTGCATAATCCAATTT+CGG 0.356449 tig0023536:+63404 None:intergenic
CTTGTGAGATGGCAGTTGTT+TGG 0.366615 tig0023536:-63165 Msa1409730:CDS
TGGGGACGTCATACCTCCTC+TGG 0.371859 tig0023536:+62893 None:intergenic
GTGCAAGAACTGCGTGGCTC+TGG 0.374979 tig0023536:+62566 None:intergenic
TATAGGTTAGTATCTGATCT+TGG 0.384235 tig0023536:+63113 None:intergenic
TGCGTGTCACAGGTATAATA+TGG 0.389058 tig0023536:-64229 Msa1409730:intron
CCAATTGTGAAGGAAATTAC+AGG 0.391923 tig0023536:+62938 None:intergenic
AAGACCATTGTTGCGGAGTA+TGG 0.392734 tig0023536:-63610 Msa1409730:CDS
GGGTCTTATTCTGCCTCAGC+TGG 0.397243 tig0023536:+63134 None:intergenic
AAAATGAAAATACTGGTTCC+TGG 0.404675 tig0023536:+64190 None:intergenic
ACCATGATAAATCATGCAAT+TGG 0.417431 tig0023536:-63661 Msa1409730:CDS
AATGCTGCTGCAATTCAATA+TGG 0.425708 tig0023536:-64744 Msa1409730:CDS
AATCATGCAATTGGAGCATC+AGG 0.427555 tig0023536:-63652 Msa1409730:CDS
ACTATTGATGGTAAATCAAC+TGG 0.428669 tig0023536:-63935 Msa1409730:intron
TTGAGCCAAAATGAAAATAC+TGG 0.442611 tig0023536:+64183 None:intergenic
GGAGTTTATTGAAGCAACTA+AGG 0.448431 tig0023536:-64546 Msa1409730:CDS
GATAAAATGCCTAGCCCAAT+GGG 0.448737 tig0023536:-62998 Msa1409730:CDS
GTAATTTCCTTCACAATTGG+TGG 0.451679 tig0023536:-62935 Msa1409730:CDS
TATGTGCCTGTGACAAGAAA+AGG 0.458750 tig0023536:-64081 Msa1409730:CDS
TCCAATTGCATGATTTATCA+TGG 0.459327 tig0023536:+63660 None:intergenic
AGGAAATCTGCTCCTACTAC+TGG 0.467062 tig0023536:-65424 Msa1409730:CDS
TTTGATGGTATATTGGGACT+TGG 0.470072 tig0023536:-64494 Msa1409730:CDS
ATAGGTTAGTATCTGATCTT+GGG 0.472284 tig0023536:+63114 None:intergenic
GCTACTTCCATGCCAAATAC+AGG 0.478041 tig0023536:-65215 Msa1409730:intron
TGATTTCCCTTGTAGTGAGC+AGG 0.478891 tig0023536:+64108 None:intergenic
TGCACTTCAGGAAGCAGTTG+AGG 0.488684 tig0023536:-62548 Msa1409730:CDS
TTCTTGTTCTGCTTGTGAGA+TGG 0.488794 tig0023536:-63176 Msa1409730:CDS
CTGTGACAAGAAAAGGATAT+TGG 0.491953 tig0023536:-64074 Msa1409730:CDS
ATGGGAGATGTAACTATTGA+TGG 0.494179 tig0023536:-63947 Msa1409730:CDS
TCAACAGATGATTCTCCCAT+TGG 0.495110 tig0023536:+62983 None:intergenic
TAGCTATGACAATGTTAAAG+TGG 0.497969 tig0023536:-64697 Msa1409730:CDS
GCTGCAATTCAATATGGTAC+TGG 0.502280 tig0023536:-64738 Msa1409730:CDS
AAACCTCACTGTTACCGTCC+TGG 0.505920 tig0023536:-65391 Msa1409730:CDS
GGATTTCAAGTGATATCAGT+TGG 0.509267 tig0023536:-64473 Msa1409730:CDS
TGTTGATCCTGCTCACTACA+AGG 0.512958 tig0023536:-64115 Msa1409730:CDS
AAATCATCTAGTGGTCTTCA+CGG 0.514187 tig0023536:-63202 Msa1409730:CDS
TCCCAATATACCATCAAACT+TGG 0.523032 tig0023536:+64499 None:intergenic
CAACAGATGATTCTCCCATT+GGG 0.523189 tig0023536:+62984 None:intergenic
GATGATTCTCCCATTGGGCT+AGG 0.532294 tig0023536:+62989 None:intergenic
GGGGACGTCATACCTCCTCT+GGG 0.533369 tig0023536:+62894 None:intergenic
TGATAAAATGCCTAGCCCAA+TGG 0.546047 tig0023536:-62999 Msa1409730:CDS
CAACCGTAAACCAGAGGAAG+AGG 0.546465 tig0023536:-64163 Msa1409730:CDS
GTCATACCTCCTCTGGGGCA+AGG 0.549507 tig0023536:+62900 None:intergenic
AGCTATGACAATGTTAAAGT+GGG 0.550679 tig0023536:-64696 Msa1409730:CDS
GACAAGAAAAGGATATTGGC+AGG 0.551662 tig0023536:-64070 Msa1409730:intron
ATTGAAGCAACTAAGGAGCC+CGG 0.555369 tig0023536:-64539 Msa1409730:CDS
TAAACCAGAGGAAGAGGAAG+GGG 0.556917 tig0023536:-64157 Msa1409730:CDS
GTCCTGGAACCGTCGCACTT+CGG 0.565588 tig0023536:-65375 Msa1409730:intron
AGTTCTTCCACCAATTGTGA+AGG 0.568138 tig0023536:+62928 None:intergenic
GGTTGAACAAGGTCTTATCC+AGG 0.568523 tig0023536:-64208 Msa1409730:CDS
CGACATAGTTGTAAAGAACC+AGG 0.576247 tig0023536:-64673 Msa1409730:intron
CGTAAACCAGAGGAAGAGGA+AGG 0.577422 tig0023536:-64159 Msa1409730:CDS
AACTTTCGACCTTGCCCCAG+AGG 0.585854 tig0023536:-62909 Msa1409730:CDS
GTGTAGTGGACGAAAATGAA+AGG 0.599522 tig0023536:-63225 Msa1409730:CDS
TGGTGGACCTGTATTTGGCA+TGG 0.600925 tig0023536:+65208 None:intergenic
ACGAAATTACCGAAGTGCGA+CGG 0.610470 tig0023536:+65366 None:intergenic
TTTGGATGCAGAACCAGCTG+AGG 0.615653 tig0023536:-63147 Msa1409730:CDS
TTTCGACCTTGCCCCAGAGG+AGG 0.620864 tig0023536:-62906 Msa1409730:intron
AAATCTGCTCCTACTACTGG+AGG 0.621448 tig0023536:-65421 Msa1409730:CDS
TTGTCCATACTCCGCAACAA+TGG 0.630745 tig0023536:+63606 None:intergenic
GTTGATCCTGCTCACTACAA+GGG 0.635225 tig0023536:-64114 Msa1409730:CDS
AATGAAAGGAAATCATCTAG+TGG 0.646020 tig0023536:-63211 Msa1409730:CDS
GTAAACCAGAGGAAGAGGAA+GGG 0.670861 tig0023536:-64158 Msa1409730:CDS
AGGTATAATATGGTTGAACA+AGG 0.671510 tig0023536:-64219 Msa1409730:CDS
AAACCAGAGGAAGAGGAAGG+GGG 0.675176 tig0023536:-64156 Msa1409730:CDS
TTGGCTCAACCGTAAACCAG+AGG 0.676669 tig0023536:-64169 Msa1409730:CDS
CCTGAAGTGCAAGAACTGCG+TGG 0.678326 tig0023536:+62560 None:intergenic
GAAGTGCGACGGTTCCAGGA+CGG 0.701371 tig0023536:+65377 None:intergenic
AGAGTGCAAGACCATTGTTG+CGG 0.713066 tig0023536:-63617 Msa1409730:CDS
GTTCCAGGACGGTAACAGTG+AGG 0.713376 tig0023536:+65388 None:intergenic
GGGACGTCATACCTCCTCTG+GGG 0.727640 tig0023536:+62895 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATAAATTTTTAACAAAAA+AGG + tig0023536:63745-63764 None:intergenic 10.0%
!! AAGGATATAAAAATATAATT+GGG + tig0023536:64666-64685 None:intergenic 10.0%
!! AAAGGATATAAAAATATAAT+TGG + tig0023536:64667-64686 None:intergenic 10.0%
!! AAAATTATAATTCTTAAGAT+CGG - tig0023536:65229-65248 Msa1409730:intron 10.0%
!!! ATTTTGGATTCATAATTTTT+AGG - tig0023536:62715-62734 Msa1409730:intron 15.0%
!!! TTATAGTATAAGATTTTTCT+TGG - tig0023536:63231-63250 Msa1409730:CDS 15.0%
!!! GTATGTTTACTTTTAAATTT+TGG - tig0023536:63586-63605 Msa1409730:CDS 15.0%
!! AAATAAAAAAGTAGAGAAAA+AGG + tig0023536:64029-64048 None:intergenic 15.0%
!!! TTTATTTTTTCAGTTTGATA+TGG - tig0023536:64052-64071 Msa1409730:intron 15.0%
!!! TTATTTTTTCAGTTTGATAT+GGG - tig0023536:64053-64072 Msa1409730:intron 15.0%
!! TTAAATTTCTAACTGAAAAA+AGG - tig0023536:64268-64287 Msa1409730:intron 15.0%
!!! TTTTCATAGCATAAAATAAT+CGG + tig0023536:65184-65203 None:intergenic 15.0%
!! TCTGAAAACCTAAAAAATTA+GGG + tig0023536:62682-62701 None:intergenic 20.0%
!!! AGAGTTTTGAATTTGAATTT+TGG - tig0023536:62699-62718 Msa1409730:intron 20.0%
!!! TTTTAGGAATTTTGAATTTG+CGG - tig0023536:62731-62750 Msa1409730:intron 20.0%
!!! AAATGCTTTTACAATTAGTT+TGG - tig0023536:63047-63066 Msa1409730:intron 20.0%
!!! TGACATATTGTAATTTGTTT+TGG - tig0023536:63113-63132 Msa1409730:CDS 20.0%
!!! TTCTTATGTTCTTCTATTTT+CGG - tig0023536:63165-63184 Msa1409730:CDS 20.0%
!! AAAAAAGATCAATACAAGTA+TGG + tig0023536:64004-64023 None:intergenic 20.0%
!!! TTTTATATCCTTTGAATCTT+TGG - tig0023536:64674-64693 Msa1409730:CDS 20.0%
!!! TTTGATATTGTTGTTATAGA+CGG - tig0023536:65419-65438 Msa1409730:CDS 20.0%
! CTGAAAACCTAAAAAATTAG+GGG + tig0023536:62681-62700 None:intergenic 25.0%
!! CTCTGAAAACCTAAAAAATT+AGG + tig0023536:62683-62702 None:intergenic 25.0%
!! ATTTGCGGTTTATGATTTTT+AGG - tig0023536:62746-62765 Msa1409730:intron 25.0%
!!! GTTTTCGTTGTTGTTAATTT+TGG - tig0023536:62768-62787 Msa1409730:intron 25.0%
! TTTCCTGTAAGTATTTGATT+TGG + tig0023536:62833-62852 None:intergenic 25.0%
! TCAAATACTTACAGGAAAAA+TGG - tig0023536:62835-62854 Msa1409730:intron 25.0%
!! TCTTTTATGTCAATAAAGGA+TGG - tig0023536:63386-63405 Msa1409730:CDS 25.0%
! TGTATCTTTCATAGTATGTT+CGG - tig0023536:63417-63436 Msa1409730:CDS 25.0%
! ATAAACTCCTGATAGTAAAA+AGG + tig0023536:63461-63480 None:intergenic 25.0%
!!! TTTGGTTCATCATTTTGTTA+CGG - tig0023536:63604-63623 Msa1409730:CDS 25.0%
!!! GTACCATTTGTAATTTTTTC+TGG - tig0023536:64466-64485 Msa1409730:CDS 25.0%
! ATGCCAGAAAAAATTACAAA+TGG + tig0023536:64472-64491 None:intergenic 25.0%
!!! TAATTTTTTCTGGCATATCT+TGG - tig0023536:64476-64495 Msa1409730:CDS 25.0%
!! AAAAGTGCATAATCCAATTT+CGG + tig0023536:64617-64636 None:intergenic 25.0%
! TAAGTGGAAAAATTAGAAGA+CGG + tig0023536:64758-64777 None:intergenic 25.0%
! CTAACTCACATTATTGATAT+AGG + tig0023536:64925-64944 None:intergenic 25.0%
! TCGTTTTCCCCTAATTTTTT+AGG - tig0023536:62671-62690 Msa1409730:intron 30.0%
!! TCTAAATTTGTTGTGTTCTG+TGG - tig0023536:62952-62971 Msa1409730:CDS 30.0%
CTTTCCCAAAAATTGAAACA+GGG - tig0023536:63002-63021 Msa1409730:CDS 30.0%
! TTCACCCTGTTTCAATTTTT+GGG + tig0023536:63009-63028 None:intergenic 30.0%
AGTAATTGCCAATAACCAAA+GGG + tig0023536:63087-63106 None:intergenic 30.0%
TAGTAATTGCCAATAACCAA+AGG + tig0023536:63088-63107 None:intergenic 30.0%
! TTGATATTTTGCATCTGTCA+AGG - tig0023536:63193-63212 Msa1409730:CDS 30.0%
! TGATATTTTGCATCTGTCAA+GGG - tig0023536:63194-63213 Msa1409730:CDS 30.0%
TAGCTATGACAATGTTAAAG+TGG - tig0023536:63321-63340 Msa1409730:intron 30.0%
AGCTATGACAATGTTAAAGT+GGG - tig0023536:63322-63341 Msa1409730:intron 30.0%
! GGTGTCTTTTATGTCAATAA+AGG - tig0023536:63382-63401 Msa1409730:intron 30.0%
TAAAAGTAAACATACCACAC+TGG + tig0023536:63581-63600 None:intergenic 30.0%
TTTAACAAAAAAGGGAAGCT+TGG + tig0023536:63736-63755 None:intergenic 30.0%
CAAATTCTGATAATCACATG+GGG + tig0023536:63771-63790 None:intergenic 30.0%
GCAAATTCTGATAATCACAT+GGG + tig0023536:63772-63791 None:intergenic 30.0%
AGGTATAATATGGTTGAACA+AGG - tig0023536:63799-63818 Msa1409730:intron 30.0%
!! AAAATGAAAATACTGGTTCC+TGG + tig0023536:63831-63850 None:intergenic 30.0%
! AGGAACCAGTATTTTCATTT+TGG - tig0023536:63830-63849 Msa1409730:intron 30.0%
TTGAGCCAAAATGAAAATAC+TGG + tig0023536:63838-63857 None:intergenic 30.0%
! ACTATTGATGGTAAATCAAC+TGG - tig0023536:64083-64102 Msa1409730:CDS 30.0%
CAATTTATAAAATCTCTGCG+AGG + tig0023536:64149-64168 None:intergenic 30.0%
! CTCGCAGAGATTTTATAAAT+TGG - tig0023536:64147-64166 Msa1409730:CDS 30.0%
!! GGTCTTAGCTTTAATTTCAT+TGG - tig0023536:64168-64187 Msa1409730:CDS 30.0%
ACCATGATAAATCATGCAAT+TGG - tig0023536:64357-64376 Msa1409730:intron 30.0%
TCCAATTGCATGATTTATCA+TGG + tig0023536:64361-64380 None:intergenic 30.0%
GTTGATTAGATTGTTACCTA+TGG - tig0023536:64498-64517 Msa1409730:CDS 30.0%
!! GAAGAAAGGTTCTTTTAGAA+TGG - tig0023536:64538-64557 Msa1409730:CDS 30.0%
! ATTGGATTATGCACTTTTGA+TGG - tig0023536:64619-64638 Msa1409730:intron 30.0%
AATGAAAGGAAATCATCTAG+TGG - tig0023536:64807-64826 Msa1409730:intron 30.0%
ATAGGTTAGTATCTGATCTT+GGG + tig0023536:64907-64926 None:intergenic 30.0%
TATAGGTTAGTATCTGATCT+TGG + tig0023536:64908-64927 None:intergenic 30.0%
TAAGAATCAAGAGATGAAAC+AGG + tig0023536:64974-64993 None:intergenic 30.0%
AAAAGCAATCAATCAGATGT+GGG + tig0023536:65147-65166 None:intergenic 30.0%
!! TATGATTAATTTGCAGACAC+TGG + tig0023536:65331-65350 None:intergenic 30.0%
!! TTATATCATTTTCTAGCCCA+GGG + tig0023536:65380-65399 None:intergenic 30.0%
!! GTTGTTGTTAATTTTGGTGC+AGG - tig0023536:62774-62793 Msa1409730:intron 35.0%
!! CCTGTAAGTATTTGATTTGG+TGG + tig0023536:62830-62849 None:intergenic 35.0%
CCACCAAATCAAATACTTAC+AGG - tig0023536:62827-62846 Msa1409730:intron 35.0%
!! CCTGTTTCAATTTTTGGGAA+AGG + tig0023536:63004-63023 None:intergenic 35.0%
CCTTTCCCAAAAATTGAAAC+AGG - tig0023536:63001-63020 Msa1409730:CDS 35.0%
! CTTCACCCTGTTTCAATTTT+TGG + tig0023536:63010-63029 None:intergenic 35.0%
AATGCTGCTGCAATTCAATA+TGG - tig0023536:63274-63293 Msa1409730:intron 35.0%
!! GATAGTAAAAAGGTGCTATG+TGG + tig0023536:63451-63470 None:intergenic 35.0%
! CATAGCACCTTTTTACTATC+AGG - tig0023536:63451-63470 Msa1409730:intron 35.0%
GGAGTTTATTGAAGCAACTA+AGG - tig0023536:63472-63491 Msa1409730:intron 35.0%
! GCCAAGTTTGATGGTATATT+GGG - tig0023536:63518-63537 Msa1409730:intron 35.0%
TCCCAATATACCATCAAACT+TGG + tig0023536:63522-63541 None:intergenic 35.0%
! TTTGATGGTATATTGGGACT+TGG - tig0023536:63524-63543 Msa1409730:intron 35.0%
! GGATTTCAAGTGATATCAGT+TGG - tig0023536:63545-63564 Msa1409730:intron 35.0%
CGCAAATTCTGATAATCACA+TGG + tig0023536:63773-63792 None:intergenic 35.0%
! CAATATCCTTTTCTTGTCAC+AGG + tig0023536:63946-63965 None:intergenic 35.0%
CTGTGACAAGAAAAGGATAT+TGG - tig0023536:63944-63963 Msa1409730:CDS 35.0%
ATGGGAGATGTAACTATTGA+TGG - tig0023536:64071-64090 Msa1409730:CDS 35.0%
TCTCTGCGAGGAAAATAAAT+TGG + tig0023536:64137-64156 None:intergenic 35.0%
TGAGTCGTATGTTAGAAGAA+AGG - tig0023536:64524-64543 Msa1409730:CDS 35.0%
! TGCTTTTCCTTTACTCCTTT+AGG - tig0023536:64570-64589 Msa1409730:intron 35.0%
ATTTCGGAACAGATCTTCTT+TGG + tig0023536:64601-64620 None:intergenic 35.0%
AAGAAGATCTGTTCCGAAAT+TGG - tig0023536:64601-64620 Msa1409730:intron 35.0%
TTCGATGACCAAAGATTCAA+AGG + tig0023536:64685-64704 None:intergenic 35.0%
CTCTCGATAGAAAAACTAAG+TGG + tig0023536:64774-64793 None:intergenic 35.0%
!! TTTTTCTATCGAGAGTGTAG+TGG - tig0023536:64779-64798 Msa1409730:intron 35.0%
AAATCATCTAGTGGTCTTCA+CGG - tig0023536:64816-64835 Msa1409730:intron 35.0%
AAACAGGAAACTCAAATAGC+AGG + tig0023536:64958-64977 None:intergenic 35.0%
CCAATTGTGAAGGAAATTAC+AGG + tig0023536:65083-65102 None:intergenic 35.0%
CCTGTAATTTCCTTCACAAT+TGG - tig0023536:65080-65099 Msa1409730:intron 35.0%
GTAATTTCCTTCACAATTGG+TGG - tig0023536:65083-65102 Msa1409730:intron 35.0%
AAAGCAATCAATCAGATGTG+GGG + tig0023536:65146-65165 None:intergenic 35.0%
CAAAAGCAATCAATCAGATG+TGG + tig0023536:65148-65167 None:intergenic 35.0%
!! TTGATTGCTTTTGCAATGAC+CGG - tig0023536:65155-65174 Msa1409730:intron 35.0%
AGCATAAAATAATCGGTGAC+CGG + tig0023536:65177-65196 None:intergenic 35.0%
ATTCTTAAGATCGGAGAACT+AGG - tig0023536:65238-65257 Msa1409730:intron 35.0%
!! GTTATATCATTTTCTAGCCC+AGG + tig0023536:65381-65400 None:intergenic 35.0%
!!! CTTTTTTCGTTCATGCTGCT+AGG - tig0023536:62574-62593 Msa1409730:CDS 40.0%
! TTTTTCACTCCTCCAGTAGT+AGG + tig0023536:62609-62628 None:intergenic 40.0%
!! TGATTTGGTGGACCTGTATT+TGG + tig0023536:62818-62837 None:intergenic 40.0%
GAATTCTACCATTCACCCTT+TGG - tig0023536:63069-63088 Msa1409730:intron 40.0%
ACCATTCACCCTTTGGTTAT+TGG - tig0023536:63076-63095 Msa1409730:intron 40.0%
! TTGGTTTCGTGCTGTTAACT+AGG - tig0023536:63250-63269 Msa1409730:intron 40.0%
! TGGTTTCGTGCTGTTAACTA+GGG - tig0023536:63251-63270 Msa1409730:intron 40.0%
GCTGCAATTCAATATGGTAC+TGG - tig0023536:63280-63299 Msa1409730:intron 40.0%
! TATGGTACTGGAGCAATTTC+TGG - tig0023536:63292-63311 Msa1409730:intron 40.0%
CGACATAGTTGTAAAGAACC+AGG - tig0023536:63345-63364 Msa1409730:intron 40.0%
AACCAGGTAATGCTGATCAT+TGG - tig0023536:63361-63380 Msa1409730:intron 40.0%
ATCAAACTTGGCCACCAAAA+AGG + tig0023536:63510-63529 None:intergenic 40.0%
!! TTTTTGGTGGCCAAGTTTGA+TGG - tig0023536:63509-63528 Msa1409730:intron 40.0%
! GGCCAAGTTTGATGGTATAT+TGG - tig0023536:63517-63536 Msa1409730:intron 40.0%
TTCATTGTAGACTCACTCAG+TGG - tig0023536:63665-63684 Msa1409730:CDS 40.0%
TATCAGAATTTGCGTGTCAC+AGG - tig0023536:63779-63798 Msa1409730:intron 40.0%
TGCGTGTCACAGGTATAATA+TGG - tig0023536:63789-63808 Msa1409730:intron 40.0%
TATGTGCCTGTGACAAGAAA+AGG - tig0023536:63937-63956 Msa1409730:CDS 40.0%
GACAAGAAAAGGATATTGGC+AGG - tig0023536:63948-63967 Msa1409730:CDS 40.0%
! GTTTGACGTGCTTTTAATCC+AGG - tig0023536:64190-64209 Msa1409730:CDS 40.0%
AATCCAGGATATTGCGTTGA+TGG - tig0023536:64205-64224 Msa1409730:CDS 40.0%
!! ATATTGCGTTGATGGCTGTT+CGG - tig0023536:64213-64232 Msa1409730:CDS 40.0%
GACTTGGGAACATCTTTGTA+TGG - tig0023536:64244-64263 Msa1409730:intron 40.0%
! AATCATGCAATTGGAGCATC+AGG - tig0023536:64366-64385 Msa1409730:intron 40.0%
AACATACGACTCATGACCAT+AGG + tig0023536:64517-64536 None:intergenic 40.0%
!! GTGTAGTGGACGAAAATGAA+AGG - tig0023536:64793-64812 Msa1409730:intron 40.0%
TTCTTGTTCTGCTTGTGAGA+TGG - tig0023536:64842-64861 Msa1409730:intron 40.0%
TGATAAAATGCCTAGCCCAA+TGG - tig0023536:65019-65038 Msa1409730:intron 40.0%
GATAAAATGCCTAGCCCAAT+GGG - tig0023536:65020-65039 Msa1409730:intron 40.0%
CAACAGATGATTCTCCCATT+GGG + tig0023536:65037-65056 None:intergenic 40.0%
TCAACAGATGATTCTCCCAT+TGG + tig0023536:65038-65057 None:intergenic 40.0%
AGTTCTTCCACCAATTGTGA+AGG + tig0023536:65093-65112 None:intergenic 40.0%
!!! GGAAAGCTTTTTTCAGCTAG+TGG + tig0023536:65310-65329 None:intergenic 40.0%
! GAAGCAGTTGAGGCTTATTT+TGG - tig0023536:65480-65499 Msa1409730:CDS 40.0%
AGGAAATCTGCTCCTACTAC+TGG - tig0023536:62594-62613 Msa1409730:intron 45.0%
AAATCTGCTCCTACTACTGG+AGG - tig0023536:62597-62616 Msa1409730:intron 45.0%
ACGAAATTACCGAAGTGCGA+CGG + tig0023536:62655-62674 None:intergenic 45.0%
GCTACTTCCATGCCAAATAC+AGG - tig0023536:62803-62822 Msa1409730:intron 45.0%
GCCAATAACCAAAGGGTGAA+TGG + tig0023536:63080-63099 None:intergenic 45.0%
CACCAATGATCAGCATTACC+TGG + tig0023536:63366-63385 None:intergenic 45.0%
ATTGAAGCAACTAAGGAGCC+CGG - tig0023536:63479-63498 Msa1409730:intron 45.0%
TTGGAAATGCTGTTCCAGTG+TGG - tig0023536:63564-63583 Msa1409730:intron 45.0%
ATGACTGCCTTGCAAATGCT+TGG - tig0023536:63636-63655 Msa1409730:CDS 45.0%
AACCTTGCCAAGCATTTGCA+AGG + tig0023536:63646-63665 None:intergenic 45.0%
CTATGAACGGGTCTACAGAA+GGG + tig0023536:63697-63716 None:intergenic 45.0%
ACTATGAACGGGTCTACAGA+AGG + tig0023536:63698-63717 None:intergenic 45.0%
TTCTGTAGACCCGTTCATAG+TGG - tig0023536:63697-63716 Msa1409730:intron 45.0%
TGTAAGGCTGCCACTATGAA+CGG + tig0023536:63710-63729 None:intergenic 45.0%
! GGTTGAACAAGGTCTTATCC+AGG - tig0023536:63810-63829 Msa1409730:intron 45.0%
! CTTCCTCTTCCTCTGGTTTA+CGG + tig0023536:63861-63880 None:intergenic 45.0%
GTAAACCAGAGGAAGAGGAA+GGG - tig0023536:63860-63879 Msa1409730:intron 45.0%
TAAACCAGAGGAAGAGGAAG+GGG - tig0023536:63861-63880 Msa1409730:intron 45.0%
! GAAGGGGGTGAGATTGTTTT+CGG - tig0023536:63877-63896 Msa1409730:intron 45.0%
TGTTGATCCTGCTCACTACA+AGG - tig0023536:63903-63922 Msa1409730:intron 45.0%
GTTGATCCTGCTCACTACAA+GGG - tig0023536:63904-63923 Msa1409730:intron 45.0%
TGATTTCCCTTGTAGTGAGC+AGG + tig0023536:63913-63932 None:intergenic 45.0%
!! TGTTCGGCAATTGCTGACTT+GGG - tig0023536:64229-64248 Msa1409730:intron 45.0%
AGAGTGCAAGACCATTGTTG+CGG - tig0023536:64401-64420 Msa1409730:intron 45.0%
AAGACCATTGTTGCGGAGTA+TGG - tig0023536:64408-64427 Msa1409730:intron 45.0%
TTGTCCATACTCCGCAACAA+TGG + tig0023536:64415-64434 None:intergenic 45.0%
TCTTCTTTGGCTGTGCCTAA+AGG + tig0023536:64588-64607 None:intergenic 45.0%
CTTGTGAGATGGCAGTTGTT+TGG - tig0023536:64853-64872 Msa1409730:intron 45.0%
!!! AATAAATTTTTAACAAAAAA+GGG + tig0023536:63744-63763 None:intergenic 5.0%
AAACCTCACTGTTACCGTCC+TGG - tig0023536:62627-62646 Msa1409730:intron 50.0%
! TGGTGGACCTGTATTTGGCA+TGG + tig0023536:62813-62832 None:intergenic 50.0%
GCCACCAAAAAGGTAACACC+GGG + tig0023536:63500-63519 None:intergenic 50.0%
GGCCACCAAAAAGGTAACAC+CGG + tig0023536:63501-63520 None:intergenic 50.0%
TGCCTTGCAAATGCTTGGCA+AGG - tig0023536:63641-63660 Msa1409730:CDS 50.0%
GTAAGGCTGCCACTATGAAC+GGG + tig0023536:63709-63728 None:intergenic 50.0%
AAGGGAAGCTTGGAGCTGTA+AGG + tig0023536:63726-63745 None:intergenic 50.0%
TTGGCTCAACCGTAAACCAG+AGG - tig0023536:63849-63868 Msa1409730:intron 50.0%
CAACCGTAAACCAGAGGAAG+AGG - tig0023536:63855-63874 Msa1409730:intron 50.0%
CGTAAACCAGAGGAAGAGGA+AGG - tig0023536:63859-63878 Msa1409730:intron 50.0%
AAACCAGAGGAAGAGGAAGG+GGG - tig0023536:63862-63881 Msa1409730:intron 50.0%
CAGCCATCAACGCAATATCC+TGG + tig0023536:64211-64230 None:intergenic 50.0%
! CTGTTCGGCAATTGCTGACT+TGG - tig0023536:64228-64247 Msa1409730:intron 50.0%
GGCTGTGCCTAAAGGAGTAA+AGG + tig0023536:64580-64599 None:intergenic 50.0%
!! TGCACTTTTGATGGCACTCG+TGG - tig0023536:64628-64647 Msa1409730:intron 50.0%
TTTGGATGCAGAACCAGCTG+AGG - tig0023536:64871-64890 Msa1409730:intron 50.0%
GATGATTCTCCCATTGGGCT+AGG + tig0023536:65032-65051 None:intergenic 50.0%
TGCACTTCAGGAAGCAGTTG+AGG - tig0023536:65470-65489 Msa1409730:CDS 50.0%
GTTCCAGGACGGTAACAGTG+AGG + tig0023536:62633-62652 None:intergenic 55.0%
!!! GGAGCCCGGTGTTACCTTTT+TGG - tig0023536:63493-63512 Msa1409730:intron 55.0%
!!! GCCCGGTGTTACCTTTTTGG+TGG - tig0023536:63496-63515 Msa1409730:intron 55.0%
! GGGGGTGAGATTGTTTTCGG+TGG - tig0023536:63880-63899 Msa1409730:intron 55.0%
! GGCACTCGTGGTGTTGAGTA+AGG - tig0023536:64640-64659 Msa1409730:intron 55.0%
!! GGGTCTTATTCTGCCTCAGC+TGG + tig0023536:64887-64906 None:intergenic 55.0%
AACTTTCGACCTTGCCCCAG+AGG - tig0023536:65109-65128 Msa1409730:intron 55.0%
AACTACTCCCAGAGACACCC+TGG - tig0023536:65360-65379 Msa1409730:intron 55.0%
ACTACTCCCAGAGACACCCT+GGG - tig0023536:65361-65380 Msa1409730:intron 55.0%
! TTCTAGCCCAGGGTGTCTCT+GGG + tig0023536:65370-65389 None:intergenic 55.0%
! TTTCTAGCCCAGGGTGTCTC+TGG + tig0023536:65371-65390 None:intergenic 55.0%
CCTGAAGTGCAAGAACTGCG+TGG + tig0023536:65461-65480 None:intergenic 55.0%
CCACGCAGTTCTTGCACTTC+AGG - tig0023536:65458-65477 Msa1409730:CDS 55.0%
GAAGTGCGACGGTTCCAGGA+CGG + tig0023536:62644-62663 None:intergenic 60.0%
GTCCTGGAACCGTCGCACTT+CGG - tig0023536:62643-62662 Msa1409730:intron 60.0%
TACCGAAGTGCGACGGTTCC+AGG + tig0023536:62648-62667 None:intergenic 60.0%
TCACCCCCTTCCTCTTCCTC+TGG + tig0023536:63868-63887 None:intergenic 60.0%
TTTCGACCTTGCCCCAGAGG+AGG - tig0023536:65112-65131 Msa1409730:intron 60.0%
!! GTCATACCTCCTCTGGGGCA+AGG + tig0023536:65121-65140 None:intergenic 60.0%
GGGACGTCATACCTCCTCTG+GGG + tig0023536:65126-65145 None:intergenic 60.0%
GGGGACGTCATACCTCCTCT+GGG + tig0023536:65127-65146 None:intergenic 60.0%
TGGGGACGTCATACCTCCTC+TGG + tig0023536:65128-65147 None:intergenic 60.0%
GTGCAAGAACTGCGTGGCTC+TGG + tig0023536:65455-65474 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0023536 gene 62531 65509 62531 ID=Msa1409730;Name=Msa1409730
tig0023536 mRNA 62531 65509 62531 ID=Msa1409730-mRNA-1;Parent=Msa1409730;Name=Msa1409730-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.09|0.08|0.83|0.72|0.83|12|0|370
tig0023536 exon 65376 65509 65376 ID=Msa1409730-mRNA-1:exon:26191;Parent=Msa1409730-mRNA-1
tig0023536 exon 65216 65244 65216 ID=Msa1409730-mRNA-1:exon:26190;Parent=Msa1409730-mRNA-1
tig0023536 exon 64674 64768 64674 ID=Msa1409730-mRNA-1:exon:26189;Parent=Msa1409730-mRNA-1
tig0023536 exon 64458 64567 64458 ID=Msa1409730-mRNA-1:exon:26188;Parent=Msa1409730-mRNA-1
tig0023536 exon 64071 64239 64071 ID=Msa1409730-mRNA-1:exon:26187;Parent=Msa1409730-mRNA-1
tig0023536 exon 63936 63975 63936 ID=Msa1409730-mRNA-1:exon:26186;Parent=Msa1409730-mRNA-1
tig0023536 exon 63821 63828 63821 ID=Msa1409730-mRNA-1:exon:26185;Parent=Msa1409730-mRNA-1
tig0023536 exon 63579 63692 63579 ID=Msa1409730-mRNA-1:exon:26184;Parent=Msa1409730-mRNA-1
tig0023536 exon 63384 63448 63384 ID=Msa1409730-mRNA-1:exon:26183;Parent=Msa1409730-mRNA-1
tig0023536 exon 63105 63261 63105 ID=Msa1409730-mRNA-1:exon:26182;Parent=Msa1409730-mRNA-1
tig0023536 exon 62907 63026 62907 ID=Msa1409730-mRNA-1:exon:26181;Parent=Msa1409730-mRNA-1
tig0023536 exon 62531 62602 62531 ID=Msa1409730-mRNA-1:exon:26180;Parent=Msa1409730-mRNA-1
tig0023536 CDS 65376 65509 65376 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 65216 65244 65216 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 64674 64768 64674 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 64458 64567 64458 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 64071 64239 64071 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 63936 63975 63936 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 63821 63828 63821 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 63579 63692 63579 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 63384 63448 63384 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 63105 63261 63105 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 62907 63026 62907 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
tig0023536 CDS 62531 62602 62531 ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1
Gene Sequence

>Msa1409730

TGTTTCGTTTTCTACGATTCGAATTTTTCGATTAATTTCATCGCTTTTTTCGTTCATGCTGCTAGGAAATCTGCTCCTACTACTGGAGGAGTGAAAAAACCTCACTGTTACCGTCCTGGAACCGTCGCACTTCGGTTGCATGCTACTTCCATGCCAAATACAGGGAATGCTGCTGCAATTCAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGCTATGACAATGTTAAAGTGGGCGACATAGTTGTAAAGAACCAGGAGTTTATTGAAGCAACTAAGGAGCCCGGTGTTACCTTTTTGGTGGCCAAGTTTGATGGTATATTGGGACTTGGATTTCAAGTGATATCAGTTGGAAATGCTGTTCCAGTGTATAATATGGTTGAACAAGGTCTTATCCAGGAACCAGTATTTTCATTTTGGCTCAACCGTAAACCAGAGGAAGAGGAAGGGGGTGAGATTGTTTTCGGTGGTGTTGATCCTGCTCACTACAAGGGAAATCACACTTATGTGCCTGTGACAAGAAAAGGATATTGGCAGTTTGATATGGGAGATGTAACTATTGATGGTAAATCAACTGGATATTGCACTGTAATTACCATGATAAATCATGCAATTGGAGCATCAGGAGTTGTAAGCAAAGAGTGCAAGACCATTGTTGCGGAGTATGGACAAACAATATTGAACTTACTTTTAGCTGAAGCACAGCCAAAGAAGATCTGTTCCGAAATTGGATTATGCACTTTTGATGGCACTCGTGGTGTTGATTTTTCTATCGAGAGTGTAGTGGACGAAAATGAAAGGAAATCATCTAGTGGTCTTCACGGTGCTTCTTGTTCTGCTTGTGAGATGGCAGTTGTTTGGATGCAGAACCAGCTGAGGCAGAATAAGACCCAAGATCAGATACTAACCTATATCAATAATCTTTGTGATAAAATGCCTAGCCCAATGGGAGAATCATCTGTTGACTGTGAGAATATCTCTTTGTTGCCTGTAATTTCCTTCACAATTGGTGGAAGAACTTTCGACCTTGCCCCAGAGGAGACGGATCTGAGATTCCAGAGCCACGCAGTTCTTGCACTTCAGGAAGCAGTTGAGGCTTATTTTGGATTATGA

Protein sequence

>Msa1409730

CFVFYDSNFSINFIAFFVHAARKSAPTTGGVKKPHCYRPGTVALRLHATSMPNTGNAAAIQYGTGAISGFFSYDNVKVGDIVVKNQEFIEATKEPGVTFLVAKFDGILGLGFQVISVGNAVPVYNMVEQGLIQEPVFSFWLNRKPEEEEGGEIVFGGVDPAHYKGNHTYVPVTRKGYWQFDMGDVTIDGKSTGYCTVITMINHAIGASGVVSKECKTIVAEYGQTILNLLLAEAQPKKICSEIGLCTFDGTRGVDFSIESVVDENERKSSSGLHGASCSACEMAVVWMQNQLRQNKTQDQILTYINNLCDKMPSPMGESSVDCENISLLPVISFTIGGRTFDLAPEETDLRFQSHAVLALQEAVEAYFGL*