Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1409730 | XP_003610462.1 | 86.527 | 334 | 18 | 3 | 41 | 347 | 130 | 463 | 0.0 | 577 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1409730 | sp|O65390|APA1_ARATH | 67.385 | 325 | 86 | 2 | 47 | 351 | 129 | 453 | 4.99e-160 | 461 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1409730 | G7JJA2 | 86.527 | 334 | 18 | 3 | 41 | 347 | 130 | 463 | 0.0 | 573 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0045770 | Msa1409730 | 0.949784 | 6.303648e-108 | -8.615850e-47 |
Msa0046140 | Msa1409730 | 0.906866 | 9.378935e-81 | -8.615850e-47 |
Msa1399480 | Msa1409730 | 0.969601 | 2.313424e-130 | -8.615850e-47 |
Msa0623150 | Msa1409730 | 0.968934 | 2.176809e-129 | -8.615850e-47 |
Msa0381770 | Msa1409730 | 0.891230 | 4.801903e-74 | -8.615850e-47 |
Msa1082500 | Msa1409730 | 0.807198 | 5.682676e-50 | -8.615850e-47 |
Msa0484780 | Msa1409730 | 0.811806 | 5.822561e-51 | -8.615850e-47 |
Msa0880970 | Msa1409730 | 0.987744 | 2.247699e-171 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1409730 | MtrunA17_Chr4g0075181 | 86.527 | 334 | 18 | 3 | 41 | 347 | 130 | 463 | 0.0 | 573 |
Msa1409730 | MtrunA17_Chr2g0288851 | 67.593 | 324 | 84 | 3 | 48 | 351 | 135 | 457 | 4.85e-154 | 443 |
Msa1409730 | MtrunA17_Chr1g0193211 | 52.381 | 336 | 138 | 4 | 36 | 351 | 122 | 455 | 1.16e-115 | 345 |
Msa1409730 | MtrunA17_Chr7g0271351 | 52.366 | 317 | 130 | 3 | 55 | 351 | 136 | 451 | 6.10e-112 | 335 |
Msa1409730 | MtrunA17_Chr4g0069631 | 44.083 | 338 | 168 | 3 | 36 | 353 | 110 | 446 | 9.27e-103 | 312 |
Msa1409730 | MtrunA17_Chr2g0302421 | 43.787 | 338 | 164 | 3 | 37 | 354 | 118 | 449 | 2.78e-96 | 295 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1409730 | AT1G11910.1 | 67.385 | 325 | 86 | 2 | 47 | 351 | 129 | 453 | 5.08e-161 | 461 |
Msa1409730 | AT1G11910.2 | 67.385 | 325 | 86 | 2 | 47 | 351 | 140 | 464 | 9.71e-161 | 461 |
Msa1409730 | AT1G62290.6 | 65.421 | 321 | 91 | 2 | 47 | 347 | 136 | 456 | 1.66e-156 | 448 |
Msa1409730 | AT1G62290.4 | 65.421 | 321 | 91 | 2 | 47 | 347 | 136 | 456 | 1.66e-156 | 448 |
Msa1409730 | AT1G62290.5 | 64.923 | 325 | 94 | 2 | 47 | 351 | 136 | 460 | 2.95e-156 | 448 |
Msa1409730 | AT1G62290.1 | 64.923 | 325 | 94 | 2 | 47 | 351 | 136 | 460 | 8.30e-156 | 448 |
Msa1409730 | AT1G62290.2 | 64.923 | 325 | 94 | 2 | 47 | 351 | 136 | 460 | 8.30e-156 | 448 |
Msa1409730 | AT4G04460.1 | 60.436 | 321 | 104 | 3 | 47 | 347 | 134 | 451 | 1.75e-141 | 412 |
Msa1409730 | AT4G04460.2 | 59.813 | 321 | 102 | 4 | 47 | 347 | 134 | 447 | 1.58e-137 | 401 |
Msa1409730 | AT1G62290.3 | 65.248 | 282 | 78 | 2 | 47 | 308 | 136 | 417 | 2.37e-133 | 388 |
Msa1409730 | AT4G22050.1 | 44.521 | 146 | 75 | 5 | 55 | 196 | 100 | 243 | 2.28e-26 | 108 |
Msa1409730 | AT1G69100.2 | 38.514 | 148 | 83 | 5 | 55 | 195 | 110 | 256 | 2.09e-24 | 103 |
Msa1409730 | AT1G69100.1 | 38.514 | 148 | 83 | 5 | 55 | 195 | 102 | 248 | 2.44e-24 | 103 |
Find 84 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATGGTACTGGAGCAATTTC+TGG | 0.182146 | tig0023536:-64726 | Msa1409730:CDS |
AAGAAGATCTGTTCCGAAAT+TGG | 0.186128 | tig0023536:-63417 | Msa1409730:CDS |
GAAGCAGTTGAGGCTTATTT+TGG | 0.193569 | tig0023536:-62538 | Msa1409730:CDS |
TGATTTGGTGGACCTGTATT+TGG | 0.271444 | tig0023536:+65203 | None:intergenic |
ATTTCGGAACAGATCTTCTT+TGG | 0.285471 | tig0023536:+63420 | None:intergenic |
CTTCCTCTTCCTCTGGTTTA+CGG | 0.290155 | tig0023536:+64160 | None:intergenic |
CCACGCAGTTCTTGCACTTC+AGG | 0.291795 | tig0023536:-62560 | Msa1409730:CDS |
ATCAAACTTGGCCACCAAAA+AGG | 0.312300 | tig0023536:+64511 | None:intergenic |
GGCCAAGTTTGATGGTATAT+TGG | 0.314506 | tig0023536:-64501 | Msa1409730:CDS |
TACCGAAGTGCGACGGTTCC+AGG | 0.319747 | tig0023536:+65373 | None:intergenic |
CTAACTCACATTATTGATAT+AGG | 0.336786 | tig0023536:+63096 | None:intergenic |
CCTGTAATTTCCTTCACAAT+TGG | 0.350996 | tig0023536:-62938 | Msa1409730:CDS |
GCCAAGTTTGATGGTATATT+GGG | 0.353483 | tig0023536:-64500 | Msa1409730:CDS |
AAAAGTGCATAATCCAATTT+CGG | 0.356449 | tig0023536:+63404 | None:intergenic |
CTTGTGAGATGGCAGTTGTT+TGG | 0.366615 | tig0023536:-63165 | Msa1409730:CDS |
TGGGGACGTCATACCTCCTC+TGG | 0.371859 | tig0023536:+62893 | None:intergenic |
GTGCAAGAACTGCGTGGCTC+TGG | 0.374979 | tig0023536:+62566 | None:intergenic |
TATAGGTTAGTATCTGATCT+TGG | 0.384235 | tig0023536:+63113 | None:intergenic |
TGCGTGTCACAGGTATAATA+TGG | 0.389058 | tig0023536:-64229 | Msa1409730:intron |
CCAATTGTGAAGGAAATTAC+AGG | 0.391923 | tig0023536:+62938 | None:intergenic |
AAGACCATTGTTGCGGAGTA+TGG | 0.392734 | tig0023536:-63610 | Msa1409730:CDS |
GGGTCTTATTCTGCCTCAGC+TGG | 0.397243 | tig0023536:+63134 | None:intergenic |
AAAATGAAAATACTGGTTCC+TGG | 0.404675 | tig0023536:+64190 | None:intergenic |
ACCATGATAAATCATGCAAT+TGG | 0.417431 | tig0023536:-63661 | Msa1409730:CDS |
AATGCTGCTGCAATTCAATA+TGG | 0.425708 | tig0023536:-64744 | Msa1409730:CDS |
AATCATGCAATTGGAGCATC+AGG | 0.427555 | tig0023536:-63652 | Msa1409730:CDS |
ACTATTGATGGTAAATCAAC+TGG | 0.428669 | tig0023536:-63935 | Msa1409730:intron |
TTGAGCCAAAATGAAAATAC+TGG | 0.442611 | tig0023536:+64183 | None:intergenic |
GGAGTTTATTGAAGCAACTA+AGG | 0.448431 | tig0023536:-64546 | Msa1409730:CDS |
GATAAAATGCCTAGCCCAAT+GGG | 0.448737 | tig0023536:-62998 | Msa1409730:CDS |
GTAATTTCCTTCACAATTGG+TGG | 0.451679 | tig0023536:-62935 | Msa1409730:CDS |
TATGTGCCTGTGACAAGAAA+AGG | 0.458750 | tig0023536:-64081 | Msa1409730:CDS |
TCCAATTGCATGATTTATCA+TGG | 0.459327 | tig0023536:+63660 | None:intergenic |
AGGAAATCTGCTCCTACTAC+TGG | 0.467062 | tig0023536:-65424 | Msa1409730:CDS |
TTTGATGGTATATTGGGACT+TGG | 0.470072 | tig0023536:-64494 | Msa1409730:CDS |
ATAGGTTAGTATCTGATCTT+GGG | 0.472284 | tig0023536:+63114 | None:intergenic |
GCTACTTCCATGCCAAATAC+AGG | 0.478041 | tig0023536:-65215 | Msa1409730:intron |
TGATTTCCCTTGTAGTGAGC+AGG | 0.478891 | tig0023536:+64108 | None:intergenic |
TGCACTTCAGGAAGCAGTTG+AGG | 0.488684 | tig0023536:-62548 | Msa1409730:CDS |
TTCTTGTTCTGCTTGTGAGA+TGG | 0.488794 | tig0023536:-63176 | Msa1409730:CDS |
CTGTGACAAGAAAAGGATAT+TGG | 0.491953 | tig0023536:-64074 | Msa1409730:CDS |
ATGGGAGATGTAACTATTGA+TGG | 0.494179 | tig0023536:-63947 | Msa1409730:CDS |
TCAACAGATGATTCTCCCAT+TGG | 0.495110 | tig0023536:+62983 | None:intergenic |
TAGCTATGACAATGTTAAAG+TGG | 0.497969 | tig0023536:-64697 | Msa1409730:CDS |
GCTGCAATTCAATATGGTAC+TGG | 0.502280 | tig0023536:-64738 | Msa1409730:CDS |
AAACCTCACTGTTACCGTCC+TGG | 0.505920 | tig0023536:-65391 | Msa1409730:CDS |
GGATTTCAAGTGATATCAGT+TGG | 0.509267 | tig0023536:-64473 | Msa1409730:CDS |
TGTTGATCCTGCTCACTACA+AGG | 0.512958 | tig0023536:-64115 | Msa1409730:CDS |
AAATCATCTAGTGGTCTTCA+CGG | 0.514187 | tig0023536:-63202 | Msa1409730:CDS |
TCCCAATATACCATCAAACT+TGG | 0.523032 | tig0023536:+64499 | None:intergenic |
CAACAGATGATTCTCCCATT+GGG | 0.523189 | tig0023536:+62984 | None:intergenic |
GATGATTCTCCCATTGGGCT+AGG | 0.532294 | tig0023536:+62989 | None:intergenic |
GGGGACGTCATACCTCCTCT+GGG | 0.533369 | tig0023536:+62894 | None:intergenic |
TGATAAAATGCCTAGCCCAA+TGG | 0.546047 | tig0023536:-62999 | Msa1409730:CDS |
CAACCGTAAACCAGAGGAAG+AGG | 0.546465 | tig0023536:-64163 | Msa1409730:CDS |
GTCATACCTCCTCTGGGGCA+AGG | 0.549507 | tig0023536:+62900 | None:intergenic |
AGCTATGACAATGTTAAAGT+GGG | 0.550679 | tig0023536:-64696 | Msa1409730:CDS |
GACAAGAAAAGGATATTGGC+AGG | 0.551662 | tig0023536:-64070 | Msa1409730:intron |
ATTGAAGCAACTAAGGAGCC+CGG | 0.555369 | tig0023536:-64539 | Msa1409730:CDS |
TAAACCAGAGGAAGAGGAAG+GGG | 0.556917 | tig0023536:-64157 | Msa1409730:CDS |
GTCCTGGAACCGTCGCACTT+CGG | 0.565588 | tig0023536:-65375 | Msa1409730:intron |
AGTTCTTCCACCAATTGTGA+AGG | 0.568138 | tig0023536:+62928 | None:intergenic |
GGTTGAACAAGGTCTTATCC+AGG | 0.568523 | tig0023536:-64208 | Msa1409730:CDS |
CGACATAGTTGTAAAGAACC+AGG | 0.576247 | tig0023536:-64673 | Msa1409730:intron |
CGTAAACCAGAGGAAGAGGA+AGG | 0.577422 | tig0023536:-64159 | Msa1409730:CDS |
AACTTTCGACCTTGCCCCAG+AGG | 0.585854 | tig0023536:-62909 | Msa1409730:CDS |
GTGTAGTGGACGAAAATGAA+AGG | 0.599522 | tig0023536:-63225 | Msa1409730:CDS |
TGGTGGACCTGTATTTGGCA+TGG | 0.600925 | tig0023536:+65208 | None:intergenic |
ACGAAATTACCGAAGTGCGA+CGG | 0.610470 | tig0023536:+65366 | None:intergenic |
TTTGGATGCAGAACCAGCTG+AGG | 0.615653 | tig0023536:-63147 | Msa1409730:CDS |
TTTCGACCTTGCCCCAGAGG+AGG | 0.620864 | tig0023536:-62906 | Msa1409730:intron |
AAATCTGCTCCTACTACTGG+AGG | 0.621448 | tig0023536:-65421 | Msa1409730:CDS |
TTGTCCATACTCCGCAACAA+TGG | 0.630745 | tig0023536:+63606 | None:intergenic |
GTTGATCCTGCTCACTACAA+GGG | 0.635225 | tig0023536:-64114 | Msa1409730:CDS |
AATGAAAGGAAATCATCTAG+TGG | 0.646020 | tig0023536:-63211 | Msa1409730:CDS |
GTAAACCAGAGGAAGAGGAA+GGG | 0.670861 | tig0023536:-64158 | Msa1409730:CDS |
AGGTATAATATGGTTGAACA+AGG | 0.671510 | tig0023536:-64219 | Msa1409730:CDS |
AAACCAGAGGAAGAGGAAGG+GGG | 0.675176 | tig0023536:-64156 | Msa1409730:CDS |
TTGGCTCAACCGTAAACCAG+AGG | 0.676669 | tig0023536:-64169 | Msa1409730:CDS |
CCTGAAGTGCAAGAACTGCG+TGG | 0.678326 | tig0023536:+62560 | None:intergenic |
GAAGTGCGACGGTTCCAGGA+CGG | 0.701371 | tig0023536:+65377 | None:intergenic |
AGAGTGCAAGACCATTGTTG+CGG | 0.713066 | tig0023536:-63617 | Msa1409730:CDS |
GTTCCAGGACGGTAACAGTG+AGG | 0.713376 | tig0023536:+65388 | None:intergenic |
GGGACGTCATACCTCCTCTG+GGG | 0.727640 | tig0023536:+62895 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CAATAAATTTTTAACAAAAA+AGG | + | tig0023536:63745-63764 | None:intergenic | 10.0% |
!! | AAGGATATAAAAATATAATT+GGG | + | tig0023536:64666-64685 | None:intergenic | 10.0% |
!! | AAAGGATATAAAAATATAAT+TGG | + | tig0023536:64667-64686 | None:intergenic | 10.0% |
!! | AAAATTATAATTCTTAAGAT+CGG | - | tig0023536:65229-65248 | Msa1409730:intron | 10.0% |
!!! | ATTTTGGATTCATAATTTTT+AGG | - | tig0023536:62715-62734 | Msa1409730:intron | 15.0% |
!!! | TTATAGTATAAGATTTTTCT+TGG | - | tig0023536:63231-63250 | Msa1409730:CDS | 15.0% |
!!! | GTATGTTTACTTTTAAATTT+TGG | - | tig0023536:63586-63605 | Msa1409730:CDS | 15.0% |
!! | AAATAAAAAAGTAGAGAAAA+AGG | + | tig0023536:64029-64048 | None:intergenic | 15.0% |
!!! | TTTATTTTTTCAGTTTGATA+TGG | - | tig0023536:64052-64071 | Msa1409730:intron | 15.0% |
!!! | TTATTTTTTCAGTTTGATAT+GGG | - | tig0023536:64053-64072 | Msa1409730:intron | 15.0% |
!! | TTAAATTTCTAACTGAAAAA+AGG | - | tig0023536:64268-64287 | Msa1409730:intron | 15.0% |
!!! | TTTTCATAGCATAAAATAAT+CGG | + | tig0023536:65184-65203 | None:intergenic | 15.0% |
!! | TCTGAAAACCTAAAAAATTA+GGG | + | tig0023536:62682-62701 | None:intergenic | 20.0% |
!!! | AGAGTTTTGAATTTGAATTT+TGG | - | tig0023536:62699-62718 | Msa1409730:intron | 20.0% |
!!! | TTTTAGGAATTTTGAATTTG+CGG | - | tig0023536:62731-62750 | Msa1409730:intron | 20.0% |
!!! | AAATGCTTTTACAATTAGTT+TGG | - | tig0023536:63047-63066 | Msa1409730:intron | 20.0% |
!!! | TGACATATTGTAATTTGTTT+TGG | - | tig0023536:63113-63132 | Msa1409730:CDS | 20.0% |
!!! | TTCTTATGTTCTTCTATTTT+CGG | - | tig0023536:63165-63184 | Msa1409730:CDS | 20.0% |
!! | AAAAAAGATCAATACAAGTA+TGG | + | tig0023536:64004-64023 | None:intergenic | 20.0% |
!!! | TTTTATATCCTTTGAATCTT+TGG | - | tig0023536:64674-64693 | Msa1409730:CDS | 20.0% |
!!! | TTTGATATTGTTGTTATAGA+CGG | - | tig0023536:65419-65438 | Msa1409730:CDS | 20.0% |
! | CTGAAAACCTAAAAAATTAG+GGG | + | tig0023536:62681-62700 | None:intergenic | 25.0% |
!! | CTCTGAAAACCTAAAAAATT+AGG | + | tig0023536:62683-62702 | None:intergenic | 25.0% |
!! | ATTTGCGGTTTATGATTTTT+AGG | - | tig0023536:62746-62765 | Msa1409730:intron | 25.0% |
!!! | GTTTTCGTTGTTGTTAATTT+TGG | - | tig0023536:62768-62787 | Msa1409730:intron | 25.0% |
! | TTTCCTGTAAGTATTTGATT+TGG | + | tig0023536:62833-62852 | None:intergenic | 25.0% |
! | TCAAATACTTACAGGAAAAA+TGG | - | tig0023536:62835-62854 | Msa1409730:intron | 25.0% |
!! | TCTTTTATGTCAATAAAGGA+TGG | - | tig0023536:63386-63405 | Msa1409730:CDS | 25.0% |
! | TGTATCTTTCATAGTATGTT+CGG | - | tig0023536:63417-63436 | Msa1409730:CDS | 25.0% |
! | ATAAACTCCTGATAGTAAAA+AGG | + | tig0023536:63461-63480 | None:intergenic | 25.0% |
!!! | TTTGGTTCATCATTTTGTTA+CGG | - | tig0023536:63604-63623 | Msa1409730:CDS | 25.0% |
!!! | GTACCATTTGTAATTTTTTC+TGG | - | tig0023536:64466-64485 | Msa1409730:CDS | 25.0% |
! | ATGCCAGAAAAAATTACAAA+TGG | + | tig0023536:64472-64491 | None:intergenic | 25.0% |
!!! | TAATTTTTTCTGGCATATCT+TGG | - | tig0023536:64476-64495 | Msa1409730:CDS | 25.0% |
!! | AAAAGTGCATAATCCAATTT+CGG | + | tig0023536:64617-64636 | None:intergenic | 25.0% |
! | TAAGTGGAAAAATTAGAAGA+CGG | + | tig0023536:64758-64777 | None:intergenic | 25.0% |
! | CTAACTCACATTATTGATAT+AGG | + | tig0023536:64925-64944 | None:intergenic | 25.0% |
! | TCGTTTTCCCCTAATTTTTT+AGG | - | tig0023536:62671-62690 | Msa1409730:intron | 30.0% |
!! | TCTAAATTTGTTGTGTTCTG+TGG | - | tig0023536:62952-62971 | Msa1409730:CDS | 30.0% |
CTTTCCCAAAAATTGAAACA+GGG | - | tig0023536:63002-63021 | Msa1409730:CDS | 30.0% | |
! | TTCACCCTGTTTCAATTTTT+GGG | + | tig0023536:63009-63028 | None:intergenic | 30.0% |
AGTAATTGCCAATAACCAAA+GGG | + | tig0023536:63087-63106 | None:intergenic | 30.0% | |
TAGTAATTGCCAATAACCAA+AGG | + | tig0023536:63088-63107 | None:intergenic | 30.0% | |
! | TTGATATTTTGCATCTGTCA+AGG | - | tig0023536:63193-63212 | Msa1409730:CDS | 30.0% |
! | TGATATTTTGCATCTGTCAA+GGG | - | tig0023536:63194-63213 | Msa1409730:CDS | 30.0% |
TAGCTATGACAATGTTAAAG+TGG | - | tig0023536:63321-63340 | Msa1409730:intron | 30.0% | |
AGCTATGACAATGTTAAAGT+GGG | - | tig0023536:63322-63341 | Msa1409730:intron | 30.0% | |
! | GGTGTCTTTTATGTCAATAA+AGG | - | tig0023536:63382-63401 | Msa1409730:intron | 30.0% |
TAAAAGTAAACATACCACAC+TGG | + | tig0023536:63581-63600 | None:intergenic | 30.0% | |
TTTAACAAAAAAGGGAAGCT+TGG | + | tig0023536:63736-63755 | None:intergenic | 30.0% | |
CAAATTCTGATAATCACATG+GGG | + | tig0023536:63771-63790 | None:intergenic | 30.0% | |
GCAAATTCTGATAATCACAT+GGG | + | tig0023536:63772-63791 | None:intergenic | 30.0% | |
AGGTATAATATGGTTGAACA+AGG | - | tig0023536:63799-63818 | Msa1409730:intron | 30.0% | |
!! | AAAATGAAAATACTGGTTCC+TGG | + | tig0023536:63831-63850 | None:intergenic | 30.0% |
! | AGGAACCAGTATTTTCATTT+TGG | - | tig0023536:63830-63849 | Msa1409730:intron | 30.0% |
TTGAGCCAAAATGAAAATAC+TGG | + | tig0023536:63838-63857 | None:intergenic | 30.0% | |
! | ACTATTGATGGTAAATCAAC+TGG | - | tig0023536:64083-64102 | Msa1409730:CDS | 30.0% |
CAATTTATAAAATCTCTGCG+AGG | + | tig0023536:64149-64168 | None:intergenic | 30.0% | |
! | CTCGCAGAGATTTTATAAAT+TGG | - | tig0023536:64147-64166 | Msa1409730:CDS | 30.0% |
!! | GGTCTTAGCTTTAATTTCAT+TGG | - | tig0023536:64168-64187 | Msa1409730:CDS | 30.0% |
ACCATGATAAATCATGCAAT+TGG | - | tig0023536:64357-64376 | Msa1409730:intron | 30.0% | |
TCCAATTGCATGATTTATCA+TGG | + | tig0023536:64361-64380 | None:intergenic | 30.0% | |
GTTGATTAGATTGTTACCTA+TGG | - | tig0023536:64498-64517 | Msa1409730:CDS | 30.0% | |
!! | GAAGAAAGGTTCTTTTAGAA+TGG | - | tig0023536:64538-64557 | Msa1409730:CDS | 30.0% |
! | ATTGGATTATGCACTTTTGA+TGG | - | tig0023536:64619-64638 | Msa1409730:intron | 30.0% |
AATGAAAGGAAATCATCTAG+TGG | - | tig0023536:64807-64826 | Msa1409730:intron | 30.0% | |
ATAGGTTAGTATCTGATCTT+GGG | + | tig0023536:64907-64926 | None:intergenic | 30.0% | |
TATAGGTTAGTATCTGATCT+TGG | + | tig0023536:64908-64927 | None:intergenic | 30.0% | |
TAAGAATCAAGAGATGAAAC+AGG | + | tig0023536:64974-64993 | None:intergenic | 30.0% | |
AAAAGCAATCAATCAGATGT+GGG | + | tig0023536:65147-65166 | None:intergenic | 30.0% | |
!! | TATGATTAATTTGCAGACAC+TGG | + | tig0023536:65331-65350 | None:intergenic | 30.0% |
!! | TTATATCATTTTCTAGCCCA+GGG | + | tig0023536:65380-65399 | None:intergenic | 30.0% |
!! | GTTGTTGTTAATTTTGGTGC+AGG | - | tig0023536:62774-62793 | Msa1409730:intron | 35.0% |
!! | CCTGTAAGTATTTGATTTGG+TGG | + | tig0023536:62830-62849 | None:intergenic | 35.0% |
CCACCAAATCAAATACTTAC+AGG | - | tig0023536:62827-62846 | Msa1409730:intron | 35.0% | |
!! | CCTGTTTCAATTTTTGGGAA+AGG | + | tig0023536:63004-63023 | None:intergenic | 35.0% |
CCTTTCCCAAAAATTGAAAC+AGG | - | tig0023536:63001-63020 | Msa1409730:CDS | 35.0% | |
! | CTTCACCCTGTTTCAATTTT+TGG | + | tig0023536:63010-63029 | None:intergenic | 35.0% |
AATGCTGCTGCAATTCAATA+TGG | - | tig0023536:63274-63293 | Msa1409730:intron | 35.0% | |
!! | GATAGTAAAAAGGTGCTATG+TGG | + | tig0023536:63451-63470 | None:intergenic | 35.0% |
! | CATAGCACCTTTTTACTATC+AGG | - | tig0023536:63451-63470 | Msa1409730:intron | 35.0% |
GGAGTTTATTGAAGCAACTA+AGG | - | tig0023536:63472-63491 | Msa1409730:intron | 35.0% | |
! | GCCAAGTTTGATGGTATATT+GGG | - | tig0023536:63518-63537 | Msa1409730:intron | 35.0% |
TCCCAATATACCATCAAACT+TGG | + | tig0023536:63522-63541 | None:intergenic | 35.0% | |
! | TTTGATGGTATATTGGGACT+TGG | - | tig0023536:63524-63543 | Msa1409730:intron | 35.0% |
! | GGATTTCAAGTGATATCAGT+TGG | - | tig0023536:63545-63564 | Msa1409730:intron | 35.0% |
CGCAAATTCTGATAATCACA+TGG | + | tig0023536:63773-63792 | None:intergenic | 35.0% | |
! | CAATATCCTTTTCTTGTCAC+AGG | + | tig0023536:63946-63965 | None:intergenic | 35.0% |
CTGTGACAAGAAAAGGATAT+TGG | - | tig0023536:63944-63963 | Msa1409730:CDS | 35.0% | |
ATGGGAGATGTAACTATTGA+TGG | - | tig0023536:64071-64090 | Msa1409730:CDS | 35.0% | |
TCTCTGCGAGGAAAATAAAT+TGG | + | tig0023536:64137-64156 | None:intergenic | 35.0% | |
TGAGTCGTATGTTAGAAGAA+AGG | - | tig0023536:64524-64543 | Msa1409730:CDS | 35.0% | |
! | TGCTTTTCCTTTACTCCTTT+AGG | - | tig0023536:64570-64589 | Msa1409730:intron | 35.0% |
ATTTCGGAACAGATCTTCTT+TGG | + | tig0023536:64601-64620 | None:intergenic | 35.0% | |
AAGAAGATCTGTTCCGAAAT+TGG | - | tig0023536:64601-64620 | Msa1409730:intron | 35.0% | |
TTCGATGACCAAAGATTCAA+AGG | + | tig0023536:64685-64704 | None:intergenic | 35.0% | |
CTCTCGATAGAAAAACTAAG+TGG | + | tig0023536:64774-64793 | None:intergenic | 35.0% | |
!! | TTTTTCTATCGAGAGTGTAG+TGG | - | tig0023536:64779-64798 | Msa1409730:intron | 35.0% |
AAATCATCTAGTGGTCTTCA+CGG | - | tig0023536:64816-64835 | Msa1409730:intron | 35.0% | |
AAACAGGAAACTCAAATAGC+AGG | + | tig0023536:64958-64977 | None:intergenic | 35.0% | |
CCAATTGTGAAGGAAATTAC+AGG | + | tig0023536:65083-65102 | None:intergenic | 35.0% | |
CCTGTAATTTCCTTCACAAT+TGG | - | tig0023536:65080-65099 | Msa1409730:intron | 35.0% | |
GTAATTTCCTTCACAATTGG+TGG | - | tig0023536:65083-65102 | Msa1409730:intron | 35.0% | |
AAAGCAATCAATCAGATGTG+GGG | + | tig0023536:65146-65165 | None:intergenic | 35.0% | |
CAAAAGCAATCAATCAGATG+TGG | + | tig0023536:65148-65167 | None:intergenic | 35.0% | |
!! | TTGATTGCTTTTGCAATGAC+CGG | - | tig0023536:65155-65174 | Msa1409730:intron | 35.0% |
AGCATAAAATAATCGGTGAC+CGG | + | tig0023536:65177-65196 | None:intergenic | 35.0% | |
ATTCTTAAGATCGGAGAACT+AGG | - | tig0023536:65238-65257 | Msa1409730:intron | 35.0% | |
!! | GTTATATCATTTTCTAGCCC+AGG | + | tig0023536:65381-65400 | None:intergenic | 35.0% |
!!! | CTTTTTTCGTTCATGCTGCT+AGG | - | tig0023536:62574-62593 | Msa1409730:CDS | 40.0% |
! | TTTTTCACTCCTCCAGTAGT+AGG | + | tig0023536:62609-62628 | None:intergenic | 40.0% |
!! | TGATTTGGTGGACCTGTATT+TGG | + | tig0023536:62818-62837 | None:intergenic | 40.0% |
GAATTCTACCATTCACCCTT+TGG | - | tig0023536:63069-63088 | Msa1409730:intron | 40.0% | |
ACCATTCACCCTTTGGTTAT+TGG | - | tig0023536:63076-63095 | Msa1409730:intron | 40.0% | |
! | TTGGTTTCGTGCTGTTAACT+AGG | - | tig0023536:63250-63269 | Msa1409730:intron | 40.0% |
! | TGGTTTCGTGCTGTTAACTA+GGG | - | tig0023536:63251-63270 | Msa1409730:intron | 40.0% |
GCTGCAATTCAATATGGTAC+TGG | - | tig0023536:63280-63299 | Msa1409730:intron | 40.0% | |
! | TATGGTACTGGAGCAATTTC+TGG | - | tig0023536:63292-63311 | Msa1409730:intron | 40.0% |
CGACATAGTTGTAAAGAACC+AGG | - | tig0023536:63345-63364 | Msa1409730:intron | 40.0% | |
AACCAGGTAATGCTGATCAT+TGG | - | tig0023536:63361-63380 | Msa1409730:intron | 40.0% | |
ATCAAACTTGGCCACCAAAA+AGG | + | tig0023536:63510-63529 | None:intergenic | 40.0% | |
!! | TTTTTGGTGGCCAAGTTTGA+TGG | - | tig0023536:63509-63528 | Msa1409730:intron | 40.0% |
! | GGCCAAGTTTGATGGTATAT+TGG | - | tig0023536:63517-63536 | Msa1409730:intron | 40.0% |
TTCATTGTAGACTCACTCAG+TGG | - | tig0023536:63665-63684 | Msa1409730:CDS | 40.0% | |
TATCAGAATTTGCGTGTCAC+AGG | - | tig0023536:63779-63798 | Msa1409730:intron | 40.0% | |
TGCGTGTCACAGGTATAATA+TGG | - | tig0023536:63789-63808 | Msa1409730:intron | 40.0% | |
TATGTGCCTGTGACAAGAAA+AGG | - | tig0023536:63937-63956 | Msa1409730:CDS | 40.0% | |
GACAAGAAAAGGATATTGGC+AGG | - | tig0023536:63948-63967 | Msa1409730:CDS | 40.0% | |
! | GTTTGACGTGCTTTTAATCC+AGG | - | tig0023536:64190-64209 | Msa1409730:CDS | 40.0% |
AATCCAGGATATTGCGTTGA+TGG | - | tig0023536:64205-64224 | Msa1409730:CDS | 40.0% | |
!! | ATATTGCGTTGATGGCTGTT+CGG | - | tig0023536:64213-64232 | Msa1409730:CDS | 40.0% |
GACTTGGGAACATCTTTGTA+TGG | - | tig0023536:64244-64263 | Msa1409730:intron | 40.0% | |
! | AATCATGCAATTGGAGCATC+AGG | - | tig0023536:64366-64385 | Msa1409730:intron | 40.0% |
AACATACGACTCATGACCAT+AGG | + | tig0023536:64517-64536 | None:intergenic | 40.0% | |
!! | GTGTAGTGGACGAAAATGAA+AGG | - | tig0023536:64793-64812 | Msa1409730:intron | 40.0% |
TTCTTGTTCTGCTTGTGAGA+TGG | - | tig0023536:64842-64861 | Msa1409730:intron | 40.0% | |
TGATAAAATGCCTAGCCCAA+TGG | - | tig0023536:65019-65038 | Msa1409730:intron | 40.0% | |
GATAAAATGCCTAGCCCAAT+GGG | - | tig0023536:65020-65039 | Msa1409730:intron | 40.0% | |
CAACAGATGATTCTCCCATT+GGG | + | tig0023536:65037-65056 | None:intergenic | 40.0% | |
TCAACAGATGATTCTCCCAT+TGG | + | tig0023536:65038-65057 | None:intergenic | 40.0% | |
AGTTCTTCCACCAATTGTGA+AGG | + | tig0023536:65093-65112 | None:intergenic | 40.0% | |
!!! | GGAAAGCTTTTTTCAGCTAG+TGG | + | tig0023536:65310-65329 | None:intergenic | 40.0% |
! | GAAGCAGTTGAGGCTTATTT+TGG | - | tig0023536:65480-65499 | Msa1409730:CDS | 40.0% |
AGGAAATCTGCTCCTACTAC+TGG | - | tig0023536:62594-62613 | Msa1409730:intron | 45.0% | |
AAATCTGCTCCTACTACTGG+AGG | - | tig0023536:62597-62616 | Msa1409730:intron | 45.0% | |
ACGAAATTACCGAAGTGCGA+CGG | + | tig0023536:62655-62674 | None:intergenic | 45.0% | |
GCTACTTCCATGCCAAATAC+AGG | - | tig0023536:62803-62822 | Msa1409730:intron | 45.0% | |
GCCAATAACCAAAGGGTGAA+TGG | + | tig0023536:63080-63099 | None:intergenic | 45.0% | |
CACCAATGATCAGCATTACC+TGG | + | tig0023536:63366-63385 | None:intergenic | 45.0% | |
ATTGAAGCAACTAAGGAGCC+CGG | - | tig0023536:63479-63498 | Msa1409730:intron | 45.0% | |
TTGGAAATGCTGTTCCAGTG+TGG | - | tig0023536:63564-63583 | Msa1409730:intron | 45.0% | |
ATGACTGCCTTGCAAATGCT+TGG | - | tig0023536:63636-63655 | Msa1409730:CDS | 45.0% | |
AACCTTGCCAAGCATTTGCA+AGG | + | tig0023536:63646-63665 | None:intergenic | 45.0% | |
CTATGAACGGGTCTACAGAA+GGG | + | tig0023536:63697-63716 | None:intergenic | 45.0% | |
ACTATGAACGGGTCTACAGA+AGG | + | tig0023536:63698-63717 | None:intergenic | 45.0% | |
TTCTGTAGACCCGTTCATAG+TGG | - | tig0023536:63697-63716 | Msa1409730:intron | 45.0% | |
TGTAAGGCTGCCACTATGAA+CGG | + | tig0023536:63710-63729 | None:intergenic | 45.0% | |
! | GGTTGAACAAGGTCTTATCC+AGG | - | tig0023536:63810-63829 | Msa1409730:intron | 45.0% |
! | CTTCCTCTTCCTCTGGTTTA+CGG | + | tig0023536:63861-63880 | None:intergenic | 45.0% |
GTAAACCAGAGGAAGAGGAA+GGG | - | tig0023536:63860-63879 | Msa1409730:intron | 45.0% | |
TAAACCAGAGGAAGAGGAAG+GGG | - | tig0023536:63861-63880 | Msa1409730:intron | 45.0% | |
! | GAAGGGGGTGAGATTGTTTT+CGG | - | tig0023536:63877-63896 | Msa1409730:intron | 45.0% |
TGTTGATCCTGCTCACTACA+AGG | - | tig0023536:63903-63922 | Msa1409730:intron | 45.0% | |
GTTGATCCTGCTCACTACAA+GGG | - | tig0023536:63904-63923 | Msa1409730:intron | 45.0% | |
TGATTTCCCTTGTAGTGAGC+AGG | + | tig0023536:63913-63932 | None:intergenic | 45.0% | |
!! | TGTTCGGCAATTGCTGACTT+GGG | - | tig0023536:64229-64248 | Msa1409730:intron | 45.0% |
AGAGTGCAAGACCATTGTTG+CGG | - | tig0023536:64401-64420 | Msa1409730:intron | 45.0% | |
AAGACCATTGTTGCGGAGTA+TGG | - | tig0023536:64408-64427 | Msa1409730:intron | 45.0% | |
TTGTCCATACTCCGCAACAA+TGG | + | tig0023536:64415-64434 | None:intergenic | 45.0% | |
TCTTCTTTGGCTGTGCCTAA+AGG | + | tig0023536:64588-64607 | None:intergenic | 45.0% | |
CTTGTGAGATGGCAGTTGTT+TGG | - | tig0023536:64853-64872 | Msa1409730:intron | 45.0% | |
!!! | AATAAATTTTTAACAAAAAA+GGG | + | tig0023536:63744-63763 | None:intergenic | 5.0% |
AAACCTCACTGTTACCGTCC+TGG | - | tig0023536:62627-62646 | Msa1409730:intron | 50.0% | |
! | TGGTGGACCTGTATTTGGCA+TGG | + | tig0023536:62813-62832 | None:intergenic | 50.0% |
GCCACCAAAAAGGTAACACC+GGG | + | tig0023536:63500-63519 | None:intergenic | 50.0% | |
GGCCACCAAAAAGGTAACAC+CGG | + | tig0023536:63501-63520 | None:intergenic | 50.0% | |
TGCCTTGCAAATGCTTGGCA+AGG | - | tig0023536:63641-63660 | Msa1409730:CDS | 50.0% | |
GTAAGGCTGCCACTATGAAC+GGG | + | tig0023536:63709-63728 | None:intergenic | 50.0% | |
AAGGGAAGCTTGGAGCTGTA+AGG | + | tig0023536:63726-63745 | None:intergenic | 50.0% | |
TTGGCTCAACCGTAAACCAG+AGG | - | tig0023536:63849-63868 | Msa1409730:intron | 50.0% | |
CAACCGTAAACCAGAGGAAG+AGG | - | tig0023536:63855-63874 | Msa1409730:intron | 50.0% | |
CGTAAACCAGAGGAAGAGGA+AGG | - | tig0023536:63859-63878 | Msa1409730:intron | 50.0% | |
AAACCAGAGGAAGAGGAAGG+GGG | - | tig0023536:63862-63881 | Msa1409730:intron | 50.0% | |
CAGCCATCAACGCAATATCC+TGG | + | tig0023536:64211-64230 | None:intergenic | 50.0% | |
! | CTGTTCGGCAATTGCTGACT+TGG | - | tig0023536:64228-64247 | Msa1409730:intron | 50.0% |
GGCTGTGCCTAAAGGAGTAA+AGG | + | tig0023536:64580-64599 | None:intergenic | 50.0% | |
!! | TGCACTTTTGATGGCACTCG+TGG | - | tig0023536:64628-64647 | Msa1409730:intron | 50.0% |
TTTGGATGCAGAACCAGCTG+AGG | - | tig0023536:64871-64890 | Msa1409730:intron | 50.0% | |
GATGATTCTCCCATTGGGCT+AGG | + | tig0023536:65032-65051 | None:intergenic | 50.0% | |
TGCACTTCAGGAAGCAGTTG+AGG | - | tig0023536:65470-65489 | Msa1409730:CDS | 50.0% | |
GTTCCAGGACGGTAACAGTG+AGG | + | tig0023536:62633-62652 | None:intergenic | 55.0% | |
!!! | GGAGCCCGGTGTTACCTTTT+TGG | - | tig0023536:63493-63512 | Msa1409730:intron | 55.0% |
!!! | GCCCGGTGTTACCTTTTTGG+TGG | - | tig0023536:63496-63515 | Msa1409730:intron | 55.0% |
! | GGGGGTGAGATTGTTTTCGG+TGG | - | tig0023536:63880-63899 | Msa1409730:intron | 55.0% |
! | GGCACTCGTGGTGTTGAGTA+AGG | - | tig0023536:64640-64659 | Msa1409730:intron | 55.0% |
!! | GGGTCTTATTCTGCCTCAGC+TGG | + | tig0023536:64887-64906 | None:intergenic | 55.0% |
AACTTTCGACCTTGCCCCAG+AGG | - | tig0023536:65109-65128 | Msa1409730:intron | 55.0% | |
AACTACTCCCAGAGACACCC+TGG | - | tig0023536:65360-65379 | Msa1409730:intron | 55.0% | |
ACTACTCCCAGAGACACCCT+GGG | - | tig0023536:65361-65380 | Msa1409730:intron | 55.0% | |
! | TTCTAGCCCAGGGTGTCTCT+GGG | + | tig0023536:65370-65389 | None:intergenic | 55.0% |
! | TTTCTAGCCCAGGGTGTCTC+TGG | + | tig0023536:65371-65390 | None:intergenic | 55.0% |
CCTGAAGTGCAAGAACTGCG+TGG | + | tig0023536:65461-65480 | None:intergenic | 55.0% | |
CCACGCAGTTCTTGCACTTC+AGG | - | tig0023536:65458-65477 | Msa1409730:CDS | 55.0% | |
GAAGTGCGACGGTTCCAGGA+CGG | + | tig0023536:62644-62663 | None:intergenic | 60.0% | |
GTCCTGGAACCGTCGCACTT+CGG | - | tig0023536:62643-62662 | Msa1409730:intron | 60.0% | |
TACCGAAGTGCGACGGTTCC+AGG | + | tig0023536:62648-62667 | None:intergenic | 60.0% | |
TCACCCCCTTCCTCTTCCTC+TGG | + | tig0023536:63868-63887 | None:intergenic | 60.0% | |
TTTCGACCTTGCCCCAGAGG+AGG | - | tig0023536:65112-65131 | Msa1409730:intron | 60.0% | |
!! | GTCATACCTCCTCTGGGGCA+AGG | + | tig0023536:65121-65140 | None:intergenic | 60.0% |
GGGACGTCATACCTCCTCTG+GGG | + | tig0023536:65126-65145 | None:intergenic | 60.0% | |
GGGGACGTCATACCTCCTCT+GGG | + | tig0023536:65127-65146 | None:intergenic | 60.0% | |
TGGGGACGTCATACCTCCTC+TGG | + | tig0023536:65128-65147 | None:intergenic | 60.0% | |
GTGCAAGAACTGCGTGGCTC+TGG | + | tig0023536:65455-65474 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0023536 | gene | 62531 | 65509 | 62531 | ID=Msa1409730;Name=Msa1409730 |
tig0023536 | mRNA | 62531 | 65509 | 62531 | ID=Msa1409730-mRNA-1;Parent=Msa1409730;Name=Msa1409730-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.09|0.08|0.83|0.72|0.83|12|0|370 |
tig0023536 | exon | 65376 | 65509 | 65376 | ID=Msa1409730-mRNA-1:exon:26191;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 65216 | 65244 | 65216 | ID=Msa1409730-mRNA-1:exon:26190;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 64674 | 64768 | 64674 | ID=Msa1409730-mRNA-1:exon:26189;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 64458 | 64567 | 64458 | ID=Msa1409730-mRNA-1:exon:26188;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 64071 | 64239 | 64071 | ID=Msa1409730-mRNA-1:exon:26187;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 63936 | 63975 | 63936 | ID=Msa1409730-mRNA-1:exon:26186;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 63821 | 63828 | 63821 | ID=Msa1409730-mRNA-1:exon:26185;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 63579 | 63692 | 63579 | ID=Msa1409730-mRNA-1:exon:26184;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 63384 | 63448 | 63384 | ID=Msa1409730-mRNA-1:exon:26183;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 63105 | 63261 | 63105 | ID=Msa1409730-mRNA-1:exon:26182;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 62907 | 63026 | 62907 | ID=Msa1409730-mRNA-1:exon:26181;Parent=Msa1409730-mRNA-1 |
tig0023536 | exon | 62531 | 62602 | 62531 | ID=Msa1409730-mRNA-1:exon:26180;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 65376 | 65509 | 65376 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 65216 | 65244 | 65216 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 64674 | 64768 | 64674 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 64458 | 64567 | 64458 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 64071 | 64239 | 64071 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 63936 | 63975 | 63936 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 63821 | 63828 | 63821 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 63579 | 63692 | 63579 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 63384 | 63448 | 63384 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 63105 | 63261 | 63105 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 62907 | 63026 | 62907 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
tig0023536 | CDS | 62531 | 62602 | 62531 | ID=Msa1409730-mRNA-1:cds;Parent=Msa1409730-mRNA-1 |
Gene Sequence |
Protein sequence |