AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1399480


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1399480 MtrunA17_Chr4g0075181 86.527 334 18 3 41 347 130 463 0.0 573
Msa1399480 MtrunA17_Chr2g0288851 67.593 324 84 3 48 351 135 457 4.85e-154 443
Msa1399480 MtrunA17_Chr1g0193211 52.381 336 138 4 36 351 122 455 1.16e-115 345
Msa1399480 MtrunA17_Chr7g0271351 52.366 317 130 3 55 351 136 451 6.10e-112 335
Msa1399480 MtrunA17_Chr4g0069631 44.083 338 168 3 36 353 110 446 9.27e-103 312
Msa1399480 MtrunA17_Chr2g0302421 43.787 338 164 3 37 354 118 449 2.78e-96 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1399480 AT1G11910.1 67.385 325 86 2 47 351 129 453 5.08e-161 461
Msa1399480 AT1G11910.2 67.385 325 86 2 47 351 140 464 9.71e-161 461
Msa1399480 AT1G62290.6 65.421 321 91 2 47 347 136 456 1.66e-156 448
Msa1399480 AT1G62290.4 65.421 321 91 2 47 347 136 456 1.66e-156 448
Msa1399480 AT1G62290.5 64.923 325 94 2 47 351 136 460 2.95e-156 448
Msa1399480 AT1G62290.1 64.923 325 94 2 47 351 136 460 8.30e-156 448
Msa1399480 AT1G62290.2 64.923 325 94 2 47 351 136 460 8.30e-156 448
Msa1399480 AT4G04460.1 60.436 321 104 3 47 347 134 451 1.75e-141 412
Msa1399480 AT4G04460.2 59.813 321 102 4 47 347 134 447 1.58e-137 401
Msa1399480 AT1G62290.3 65.248 282 78 2 47 308 136 417 2.37e-133 388
Msa1399480 AT4G22050.1 44.521 146 75 5 55 196 100 243 2.28e-26 108
Msa1399480 AT1G69100.2 38.514 148 83 5 55 195 110 256 2.09e-24 103
Msa1399480 AT1G69100.1 38.514 148 83 5 55 195 102 248 2.44e-24 103

Find 84 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGTACTGGAGCAATTTC+TGG 0.182146 tig0022368:-15371 Msa1399480:CDS
AAGAAGATCTGTTCCGAAAT+TGG 0.186128 tig0022368:-14062 Msa1399480:CDS
GAAGCAGTTGAGGCTTATTT+TGG 0.193569 tig0022368:-13183 Msa1399480:CDS
TGATTTGGTGGACCTGTATT+TGG 0.271444 tig0022368:+15848 None:intergenic
ATTTCGGAACAGATCTTCTT+TGG 0.285471 tig0022368:+14065 None:intergenic
CTTCCTCTTCCTCTGGTTTA+CGG 0.290155 tig0022368:+14805 None:intergenic
CCACGCAGTTCTTGCACTTC+AGG 0.291795 tig0022368:-13205 Msa1399480:CDS
ATCAAACTTGGCCACCAAAA+AGG 0.312300 tig0022368:+15156 None:intergenic
GGCCAAGTTTGATGGTATAT+TGG 0.314506 tig0022368:-15146 Msa1399480:CDS
TACCGAAGTGCGACGGTTCC+AGG 0.319747 tig0022368:+16018 None:intergenic
CTAACTCACATTATTGATAT+AGG 0.336786 tig0022368:+13741 None:intergenic
CCTGTAATTTCCTTCACAAT+TGG 0.350996 tig0022368:-13583 Msa1399480:CDS
GCCAAGTTTGATGGTATATT+GGG 0.353483 tig0022368:-15145 Msa1399480:CDS
AAAAGTGCATAATCCAATTT+CGG 0.356449 tig0022368:+14049 None:intergenic
CTTGTGAGATGGCAGTTGTT+TGG 0.366615 tig0022368:-13810 Msa1399480:CDS
TGGGGACGTCATACCTCCTC+TGG 0.371859 tig0022368:+13538 None:intergenic
GTGCAAGAACTGCGTGGCTC+TGG 0.374979 tig0022368:+13211 None:intergenic
TATAGGTTAGTATCTGATCT+TGG 0.384235 tig0022368:+13758 None:intergenic
TGCGTGTCACAGGTATAATA+TGG 0.389058 tig0022368:-14874 Msa1399480:intron
CCAATTGTGAAGGAAATTAC+AGG 0.391923 tig0022368:+13583 None:intergenic
AAGACCATTGTTGCGGAGTA+TGG 0.392734 tig0022368:-14255 Msa1399480:CDS
GGGTCTTATTCTGCCTCAGC+TGG 0.397243 tig0022368:+13779 None:intergenic
AAAATGAAAATACTGGTTCC+TGG 0.404675 tig0022368:+14835 None:intergenic
ACCATGATAAATCATGCAAT+TGG 0.417431 tig0022368:-14306 Msa1399480:CDS
AATGCTGCTGCAATTCAATA+TGG 0.425708 tig0022368:-15389 Msa1399480:CDS
AATCATGCAATTGGAGCATC+AGG 0.427555 tig0022368:-14297 Msa1399480:CDS
ACTATTGATGGTAAATCAAC+TGG 0.428669 tig0022368:-14580 Msa1399480:intron
TTGAGCCAAAATGAAAATAC+TGG 0.442611 tig0022368:+14828 None:intergenic
GGAGTTTATTGAAGCAACTA+AGG 0.448431 tig0022368:-15191 Msa1399480:CDS
GATAAAATGCCTAGCCCAAT+GGG 0.448737 tig0022368:-13643 Msa1399480:CDS
GTAATTTCCTTCACAATTGG+TGG 0.451679 tig0022368:-13580 Msa1399480:CDS
TATGTGCCTGTGACAAGAAA+AGG 0.458750 tig0022368:-14726 Msa1399480:CDS
TCCAATTGCATGATTTATCA+TGG 0.459327 tig0022368:+14305 None:intergenic
AGGAAATCTGCTCCTACTAC+TGG 0.467062 tig0022368:-16069 Msa1399480:CDS
TTTGATGGTATATTGGGACT+TGG 0.470072 tig0022368:-15139 Msa1399480:CDS
ATAGGTTAGTATCTGATCTT+GGG 0.472284 tig0022368:+13759 None:intergenic
GCTACTTCCATGCCAAATAC+AGG 0.478041 tig0022368:-15860 Msa1399480:intron
TGATTTCCCTTGTAGTGAGC+AGG 0.478891 tig0022368:+14753 None:intergenic
TGCACTTCAGGAAGCAGTTG+AGG 0.488684 tig0022368:-13193 Msa1399480:CDS
TTCTTGTTCTGCTTGTGAGA+TGG 0.488794 tig0022368:-13821 Msa1399480:CDS
CTGTGACAAGAAAAGGATAT+TGG 0.491953 tig0022368:-14719 Msa1399480:CDS
ATGGGAGATGTAACTATTGA+TGG 0.494179 tig0022368:-14592 Msa1399480:CDS
TCAACAGATGATTCTCCCAT+TGG 0.495110 tig0022368:+13628 None:intergenic
TAGCTATGACAATGTTAAAG+TGG 0.497969 tig0022368:-15342 Msa1399480:CDS
GCTGCAATTCAATATGGTAC+TGG 0.502280 tig0022368:-15383 Msa1399480:CDS
AAACCTCACTGTTACCGTCC+TGG 0.505920 tig0022368:-16036 Msa1399480:CDS
GGATTTCAAGTGATATCAGT+TGG 0.509267 tig0022368:-15118 Msa1399480:CDS
TGTTGATCCTGCTCACTACA+AGG 0.512958 tig0022368:-14760 Msa1399480:CDS
AAATCATCTAGTGGTCTTCA+CGG 0.514187 tig0022368:-13847 Msa1399480:CDS
TCCCAATATACCATCAAACT+TGG 0.523032 tig0022368:+15144 None:intergenic
CAACAGATGATTCTCCCATT+GGG 0.523189 tig0022368:+13629 None:intergenic
GATGATTCTCCCATTGGGCT+AGG 0.532294 tig0022368:+13634 None:intergenic
GGGGACGTCATACCTCCTCT+GGG 0.533369 tig0022368:+13539 None:intergenic
TGATAAAATGCCTAGCCCAA+TGG 0.546047 tig0022368:-13644 Msa1399480:CDS
CAACCGTAAACCAGAGGAAG+AGG 0.546465 tig0022368:-14808 Msa1399480:CDS
GTCATACCTCCTCTGGGGCA+AGG 0.549507 tig0022368:+13545 None:intergenic
AGCTATGACAATGTTAAAGT+GGG 0.550679 tig0022368:-15341 Msa1399480:CDS
GACAAGAAAAGGATATTGGC+AGG 0.551662 tig0022368:-14715 Msa1399480:intron
ATTGAAGCAACTAAGGAGCC+CGG 0.555369 tig0022368:-15184 Msa1399480:CDS
TAAACCAGAGGAAGAGGAAG+GGG 0.556917 tig0022368:-14802 Msa1399480:CDS
GTCCTGGAACCGTCGCACTT+CGG 0.565588 tig0022368:-16020 Msa1399480:intron
AGTTCTTCCACCAATTGTGA+AGG 0.568138 tig0022368:+13573 None:intergenic
GGTTGAACAAGGTCTTATCC+AGG 0.568523 tig0022368:-14853 Msa1399480:CDS
CGACATAGTTGTAAAGAACC+AGG 0.576247 tig0022368:-15318 Msa1399480:intron
CGTAAACCAGAGGAAGAGGA+AGG 0.577422 tig0022368:-14804 Msa1399480:CDS
AACTTTCGACCTTGCCCCAG+AGG 0.585854 tig0022368:-13554 Msa1399480:CDS
GTGTAGTGGACGAAAATGAA+AGG 0.599522 tig0022368:-13870 Msa1399480:CDS
TGGTGGACCTGTATTTGGCA+TGG 0.600925 tig0022368:+15853 None:intergenic
ACGAAATTACCGAAGTGCGA+CGG 0.610470 tig0022368:+16011 None:intergenic
TTTGGATGCAGAACCAGCTG+AGG 0.615653 tig0022368:-13792 Msa1399480:CDS
TTTCGACCTTGCCCCAGAGG+AGG 0.620864 tig0022368:-13551 Msa1399480:intron
AAATCTGCTCCTACTACTGG+AGG 0.621448 tig0022368:-16066 Msa1399480:CDS
TTGTCCATACTCCGCAACAA+TGG 0.630745 tig0022368:+14251 None:intergenic
GTTGATCCTGCTCACTACAA+GGG 0.635225 tig0022368:-14759 Msa1399480:CDS
AATGAAAGGAAATCATCTAG+TGG 0.646020 tig0022368:-13856 Msa1399480:CDS
GTAAACCAGAGGAAGAGGAA+GGG 0.670861 tig0022368:-14803 Msa1399480:CDS
AGGTATAATATGGTTGAACA+AGG 0.671510 tig0022368:-14864 Msa1399480:CDS
AAACCAGAGGAAGAGGAAGG+GGG 0.675176 tig0022368:-14801 Msa1399480:CDS
TTGGCTCAACCGTAAACCAG+AGG 0.676669 tig0022368:-14814 Msa1399480:CDS
CCTGAAGTGCAAGAACTGCG+TGG 0.678326 tig0022368:+13205 None:intergenic
GAAGTGCGACGGTTCCAGGA+CGG 0.701371 tig0022368:+16022 None:intergenic
AGAGTGCAAGACCATTGTTG+CGG 0.713066 tig0022368:-14262 Msa1399480:CDS
GTTCCAGGACGGTAACAGTG+AGG 0.713376 tig0022368:+16033 None:intergenic
GGGACGTCATACCTCCTCTG+GGG 0.727640 tig0022368:+13540 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAATAAATTTTTAACAAAAA+AGG + tig0022368:14390-14409 None:intergenic 10.0%
!! AAGGATATAAAAATATAATT+GGG + tig0022368:15311-15330 None:intergenic 10.0%
!! AAAGGATATAAAAATATAAT+TGG + tig0022368:15312-15331 None:intergenic 10.0%
!! AAAATTATAATTCTTAAGAT+CGG - tig0022368:15874-15893 Msa1399480:intron 10.0%
!!! ATTTTGGATTCATAATTTTT+AGG - tig0022368:13360-13379 Msa1399480:intron 15.0%
!!! TTATAGTATAAGATTTTTCT+TGG - tig0022368:13876-13895 Msa1399480:CDS 15.0%
!!! GTATGTTTACTTTTAAATTT+TGG - tig0022368:14231-14250 Msa1399480:CDS 15.0%
!! AAATAAAAAAGTAGAGAAAA+AGG + tig0022368:14674-14693 None:intergenic 15.0%
!!! TTTATTTTTTCAGTTTGATA+TGG - tig0022368:14697-14716 Msa1399480:intron 15.0%
!!! TTATTTTTTCAGTTTGATAT+GGG - tig0022368:14698-14717 Msa1399480:intron 15.0%
!! TTAAATTTCTAACTGAAAAA+AGG - tig0022368:14913-14932 Msa1399480:intron 15.0%
!!! TTTTCATAGCATAAAATAAT+CGG + tig0022368:15829-15848 None:intergenic 15.0%
!! TCTGAAAACCTAAAAAATTA+GGG + tig0022368:13327-13346 None:intergenic 20.0%
!!! AGAGTTTTGAATTTGAATTT+TGG - tig0022368:13344-13363 Msa1399480:intron 20.0%
!!! TTTTAGGAATTTTGAATTTG+CGG - tig0022368:13376-13395 Msa1399480:intron 20.0%
!!! AAATGCTTTTACAATTAGTT+TGG - tig0022368:13692-13711 Msa1399480:intron 20.0%
!!! TGACATATTGTAATTTGTTT+TGG - tig0022368:13758-13777 Msa1399480:CDS 20.0%
!!! TTCTTATGTTCTTCTATTTT+CGG - tig0022368:13810-13829 Msa1399480:CDS 20.0%
!! AAAAAAGATCAATACAAGTA+TGG + tig0022368:14649-14668 None:intergenic 20.0%
!!! TTTTATATCCTTTGAATCTT+TGG - tig0022368:15319-15338 Msa1399480:CDS 20.0%
!!! TTTGATATTGTTGTTATAGA+CGG - tig0022368:16064-16083 Msa1399480:CDS 20.0%
! CTGAAAACCTAAAAAATTAG+GGG + tig0022368:13326-13345 None:intergenic 25.0%
!! CTCTGAAAACCTAAAAAATT+AGG + tig0022368:13328-13347 None:intergenic 25.0%
!! ATTTGCGGTTTATGATTTTT+AGG - tig0022368:13391-13410 Msa1399480:intron 25.0%
!!! GTTTTCGTTGTTGTTAATTT+TGG - tig0022368:13413-13432 Msa1399480:intron 25.0%
! TTTCCTGTAAGTATTTGATT+TGG + tig0022368:13478-13497 None:intergenic 25.0%
! TCAAATACTTACAGGAAAAA+TGG - tig0022368:13480-13499 Msa1399480:intron 25.0%
!! TCTTTTATGTCAATAAAGGA+TGG - tig0022368:14031-14050 Msa1399480:CDS 25.0%
! TGTATCTTTCATAGTATGTT+CGG - tig0022368:14062-14081 Msa1399480:CDS 25.0%
! ATAAACTCCTGATAGTAAAA+AGG + tig0022368:14106-14125 None:intergenic 25.0%
!!! TTTGGTTCATCATTTTGTTA+CGG - tig0022368:14249-14268 Msa1399480:CDS 25.0%
!!! GTACCATTTGTAATTTTTTC+TGG - tig0022368:15111-15130 Msa1399480:CDS 25.0%
! ATGCCAGAAAAAATTACAAA+TGG + tig0022368:15117-15136 None:intergenic 25.0%
!!! TAATTTTTTCTGGCATATCT+TGG - tig0022368:15121-15140 Msa1399480:CDS 25.0%
!! AAAAGTGCATAATCCAATTT+CGG + tig0022368:15262-15281 None:intergenic 25.0%
! TAAGTGGAAAAATTAGAAGA+CGG + tig0022368:15403-15422 None:intergenic 25.0%
! CTAACTCACATTATTGATAT+AGG + tig0022368:15570-15589 None:intergenic 25.0%
! TCGTTTTCCCCTAATTTTTT+AGG - tig0022368:13316-13335 Msa1399480:intron 30.0%
!! TCTAAATTTGTTGTGTTCTG+TGG - tig0022368:13597-13616 Msa1399480:CDS 30.0%
CTTTCCCAAAAATTGAAACA+GGG - tig0022368:13647-13666 Msa1399480:CDS 30.0%
! TTCACCCTGTTTCAATTTTT+GGG + tig0022368:13654-13673 None:intergenic 30.0%
AGTAATTGCCAATAACCAAA+GGG + tig0022368:13732-13751 None:intergenic 30.0%
TAGTAATTGCCAATAACCAA+AGG + tig0022368:13733-13752 None:intergenic 30.0%
! TTGATATTTTGCATCTGTCA+AGG - tig0022368:13838-13857 Msa1399480:CDS 30.0%
! TGATATTTTGCATCTGTCAA+GGG - tig0022368:13839-13858 Msa1399480:CDS 30.0%
TAGCTATGACAATGTTAAAG+TGG - tig0022368:13966-13985 Msa1399480:intron 30.0%
AGCTATGACAATGTTAAAGT+GGG - tig0022368:13967-13986 Msa1399480:intron 30.0%
! GGTGTCTTTTATGTCAATAA+AGG - tig0022368:14027-14046 Msa1399480:intron 30.0%
TAAAAGTAAACATACCACAC+TGG + tig0022368:14226-14245 None:intergenic 30.0%
TTTAACAAAAAAGGGAAGCT+TGG + tig0022368:14381-14400 None:intergenic 30.0%
CAAATTCTGATAATCACATG+GGG + tig0022368:14416-14435 None:intergenic 30.0%
GCAAATTCTGATAATCACAT+GGG + tig0022368:14417-14436 None:intergenic 30.0%
AGGTATAATATGGTTGAACA+AGG - tig0022368:14444-14463 Msa1399480:intron 30.0%
!! AAAATGAAAATACTGGTTCC+TGG + tig0022368:14476-14495 None:intergenic 30.0%
! AGGAACCAGTATTTTCATTT+TGG - tig0022368:14475-14494 Msa1399480:intron 30.0%
TTGAGCCAAAATGAAAATAC+TGG + tig0022368:14483-14502 None:intergenic 30.0%
! ACTATTGATGGTAAATCAAC+TGG - tig0022368:14728-14747 Msa1399480:CDS 30.0%
CAATTTATAAAATCTCTGCG+AGG + tig0022368:14794-14813 None:intergenic 30.0%
! CTCGCAGAGATTTTATAAAT+TGG - tig0022368:14792-14811 Msa1399480:CDS 30.0%
!! GGTCTTAGCTTTAATTTCAT+TGG - tig0022368:14813-14832 Msa1399480:CDS 30.0%
ACCATGATAAATCATGCAAT+TGG - tig0022368:15002-15021 Msa1399480:intron 30.0%
TCCAATTGCATGATTTATCA+TGG + tig0022368:15006-15025 None:intergenic 30.0%
GTTGATTAGATTGTTACCTA+TGG - tig0022368:15143-15162 Msa1399480:CDS 30.0%
!! GAAGAAAGGTTCTTTTAGAA+TGG - tig0022368:15183-15202 Msa1399480:CDS 30.0%
! ATTGGATTATGCACTTTTGA+TGG - tig0022368:15264-15283 Msa1399480:intron 30.0%
AATGAAAGGAAATCATCTAG+TGG - tig0022368:15452-15471 Msa1399480:intron 30.0%
ATAGGTTAGTATCTGATCTT+GGG + tig0022368:15552-15571 None:intergenic 30.0%
TATAGGTTAGTATCTGATCT+TGG + tig0022368:15553-15572 None:intergenic 30.0%
TAAGAATCAAGAGATGAAAC+AGG + tig0022368:15619-15638 None:intergenic 30.0%
AAAAGCAATCAATCAGATGT+GGG + tig0022368:15792-15811 None:intergenic 30.0%
!! TATGATTAATTTGCAGACAC+TGG + tig0022368:15976-15995 None:intergenic 30.0%
!! TTATATCATTTTCTAGCCCA+GGG + tig0022368:16025-16044 None:intergenic 30.0%
!! GTTGTTGTTAATTTTGGTGC+AGG - tig0022368:13419-13438 Msa1399480:intron 35.0%
!! CCTGTAAGTATTTGATTTGG+TGG + tig0022368:13475-13494 None:intergenic 35.0%
CCACCAAATCAAATACTTAC+AGG - tig0022368:13472-13491 Msa1399480:intron 35.0%
!! CCTGTTTCAATTTTTGGGAA+AGG + tig0022368:13649-13668 None:intergenic 35.0%
CCTTTCCCAAAAATTGAAAC+AGG - tig0022368:13646-13665 Msa1399480:CDS 35.0%
! CTTCACCCTGTTTCAATTTT+TGG + tig0022368:13655-13674 None:intergenic 35.0%
AATGCTGCTGCAATTCAATA+TGG - tig0022368:13919-13938 Msa1399480:intron 35.0%
!! GATAGTAAAAAGGTGCTATG+TGG + tig0022368:14096-14115 None:intergenic 35.0%
! CATAGCACCTTTTTACTATC+AGG - tig0022368:14096-14115 Msa1399480:intron 35.0%
GGAGTTTATTGAAGCAACTA+AGG - tig0022368:14117-14136 Msa1399480:intron 35.0%
! GCCAAGTTTGATGGTATATT+GGG - tig0022368:14163-14182 Msa1399480:intron 35.0%
TCCCAATATACCATCAAACT+TGG + tig0022368:14167-14186 None:intergenic 35.0%
! TTTGATGGTATATTGGGACT+TGG - tig0022368:14169-14188 Msa1399480:intron 35.0%
! GGATTTCAAGTGATATCAGT+TGG - tig0022368:14190-14209 Msa1399480:intron 35.0%
CGCAAATTCTGATAATCACA+TGG + tig0022368:14418-14437 None:intergenic 35.0%
! CAATATCCTTTTCTTGTCAC+AGG + tig0022368:14591-14610 None:intergenic 35.0%
CTGTGACAAGAAAAGGATAT+TGG - tig0022368:14589-14608 Msa1399480:CDS 35.0%
ATGGGAGATGTAACTATTGA+TGG - tig0022368:14716-14735 Msa1399480:CDS 35.0%
TCTCTGCGAGGAAAATAAAT+TGG + tig0022368:14782-14801 None:intergenic 35.0%
TGAGTCGTATGTTAGAAGAA+AGG - tig0022368:15169-15188 Msa1399480:CDS 35.0%
! TGCTTTTCCTTTACTCCTTT+AGG - tig0022368:15215-15234 Msa1399480:intron 35.0%
ATTTCGGAACAGATCTTCTT+TGG + tig0022368:15246-15265 None:intergenic 35.0%
AAGAAGATCTGTTCCGAAAT+TGG - tig0022368:15246-15265 Msa1399480:intron 35.0%
TTCGATGACCAAAGATTCAA+AGG + tig0022368:15330-15349 None:intergenic 35.0%
CTCTCGATAGAAAAACTAAG+TGG + tig0022368:15419-15438 None:intergenic 35.0%
!! TTTTTCTATCGAGAGTGTAG+TGG - tig0022368:15424-15443 Msa1399480:intron 35.0%
AAATCATCTAGTGGTCTTCA+CGG - tig0022368:15461-15480 Msa1399480:intron 35.0%
AAACAGGAAACTCAAATAGC+AGG + tig0022368:15603-15622 None:intergenic 35.0%
CCAATTGTGAAGGAAATTAC+AGG + tig0022368:15728-15747 None:intergenic 35.0%
CCTGTAATTTCCTTCACAAT+TGG - tig0022368:15725-15744 Msa1399480:intron 35.0%
GTAATTTCCTTCACAATTGG+TGG - tig0022368:15728-15747 Msa1399480:intron 35.0%
AAAGCAATCAATCAGATGTG+GGG + tig0022368:15791-15810 None:intergenic 35.0%
CAAAAGCAATCAATCAGATG+TGG + tig0022368:15793-15812 None:intergenic 35.0%
!! TTGATTGCTTTTGCAATGAC+CGG - tig0022368:15800-15819 Msa1399480:intron 35.0%
AGCATAAAATAATCGGTGAC+CGG + tig0022368:15822-15841 None:intergenic 35.0%
ATTCTTAAGATCGGAGAACT+AGG - tig0022368:15883-15902 Msa1399480:intron 35.0%
!! GTTATATCATTTTCTAGCCC+AGG + tig0022368:16026-16045 None:intergenic 35.0%
!!! CTTTTTTCGTTCATGCTGCT+AGG - tig0022368:13219-13238 Msa1399480:CDS 40.0%
! TTTTTCACTCCTCCAGTAGT+AGG + tig0022368:13254-13273 None:intergenic 40.0%
!! TGATTTGGTGGACCTGTATT+TGG + tig0022368:13463-13482 None:intergenic 40.0%
GAATTCTACCATTCACCCTT+TGG - tig0022368:13714-13733 Msa1399480:intron 40.0%
ACCATTCACCCTTTGGTTAT+TGG - tig0022368:13721-13740 Msa1399480:intron 40.0%
! TTGGTTTCGTGCTGTTAACT+AGG - tig0022368:13895-13914 Msa1399480:intron 40.0%
! TGGTTTCGTGCTGTTAACTA+GGG - tig0022368:13896-13915 Msa1399480:intron 40.0%
GCTGCAATTCAATATGGTAC+TGG - tig0022368:13925-13944 Msa1399480:intron 40.0%
! TATGGTACTGGAGCAATTTC+TGG - tig0022368:13937-13956 Msa1399480:intron 40.0%
CGACATAGTTGTAAAGAACC+AGG - tig0022368:13990-14009 Msa1399480:intron 40.0%
AACCAGGTAATGCTGATCAT+TGG - tig0022368:14006-14025 Msa1399480:intron 40.0%
ATCAAACTTGGCCACCAAAA+AGG + tig0022368:14155-14174 None:intergenic 40.0%
!! TTTTTGGTGGCCAAGTTTGA+TGG - tig0022368:14154-14173 Msa1399480:intron 40.0%
! GGCCAAGTTTGATGGTATAT+TGG - tig0022368:14162-14181 Msa1399480:intron 40.0%
TTCATTGTAGACTCACTCAG+TGG - tig0022368:14310-14329 Msa1399480:CDS 40.0%
TATCAGAATTTGCGTGTCAC+AGG - tig0022368:14424-14443 Msa1399480:intron 40.0%
TGCGTGTCACAGGTATAATA+TGG - tig0022368:14434-14453 Msa1399480:intron 40.0%
TATGTGCCTGTGACAAGAAA+AGG - tig0022368:14582-14601 Msa1399480:CDS 40.0%
GACAAGAAAAGGATATTGGC+AGG - tig0022368:14593-14612 Msa1399480:CDS 40.0%
! GTTTGACGTGCTTTTAATCC+AGG - tig0022368:14835-14854 Msa1399480:CDS 40.0%
AATCCAGGATATTGCGTTGA+TGG - tig0022368:14850-14869 Msa1399480:CDS 40.0%
!! ATATTGCGTTGATGGCTGTT+CGG - tig0022368:14858-14877 Msa1399480:CDS 40.0%
GACTTGGGAACATCTTTGTA+TGG - tig0022368:14889-14908 Msa1399480:intron 40.0%
! AATCATGCAATTGGAGCATC+AGG - tig0022368:15011-15030 Msa1399480:intron 40.0%
AACATACGACTCATGACCAT+AGG + tig0022368:15162-15181 None:intergenic 40.0%
!! GTGTAGTGGACGAAAATGAA+AGG - tig0022368:15438-15457 Msa1399480:intron 40.0%
TTCTTGTTCTGCTTGTGAGA+TGG - tig0022368:15487-15506 Msa1399480:intron 40.0%
TGATAAAATGCCTAGCCCAA+TGG - tig0022368:15664-15683 Msa1399480:intron 40.0%
GATAAAATGCCTAGCCCAAT+GGG - tig0022368:15665-15684 Msa1399480:intron 40.0%
CAACAGATGATTCTCCCATT+GGG + tig0022368:15682-15701 None:intergenic 40.0%
TCAACAGATGATTCTCCCAT+TGG + tig0022368:15683-15702 None:intergenic 40.0%
AGTTCTTCCACCAATTGTGA+AGG + tig0022368:15738-15757 None:intergenic 40.0%
!!! GGAAAGCTTTTTTCAGCTAG+TGG + tig0022368:15955-15974 None:intergenic 40.0%
! GAAGCAGTTGAGGCTTATTT+TGG - tig0022368:16125-16144 Msa1399480:CDS 40.0%
AGGAAATCTGCTCCTACTAC+TGG - tig0022368:13239-13258 Msa1399480:intron 45.0%
AAATCTGCTCCTACTACTGG+AGG - tig0022368:13242-13261 Msa1399480:intron 45.0%
ACGAAATTACCGAAGTGCGA+CGG + tig0022368:13300-13319 None:intergenic 45.0%
GCTACTTCCATGCCAAATAC+AGG - tig0022368:13448-13467 Msa1399480:intron 45.0%
GCCAATAACCAAAGGGTGAA+TGG + tig0022368:13725-13744 None:intergenic 45.0%
CACCAATGATCAGCATTACC+TGG + tig0022368:14011-14030 None:intergenic 45.0%
ATTGAAGCAACTAAGGAGCC+CGG - tig0022368:14124-14143 Msa1399480:intron 45.0%
TTGGAAATGCTGTTCCAGTG+TGG - tig0022368:14209-14228 Msa1399480:intron 45.0%
ATGACTGCCTTGCAAATGCT+TGG - tig0022368:14281-14300 Msa1399480:CDS 45.0%
AACCTTGCCAAGCATTTGCA+AGG + tig0022368:14291-14310 None:intergenic 45.0%
CTATGAACGGGTCTACAGAA+GGG + tig0022368:14342-14361 None:intergenic 45.0%
ACTATGAACGGGTCTACAGA+AGG + tig0022368:14343-14362 None:intergenic 45.0%
TTCTGTAGACCCGTTCATAG+TGG - tig0022368:14342-14361 Msa1399480:intron 45.0%
TGTAAGGCTGCCACTATGAA+CGG + tig0022368:14355-14374 None:intergenic 45.0%
! GGTTGAACAAGGTCTTATCC+AGG - tig0022368:14455-14474 Msa1399480:intron 45.0%
! CTTCCTCTTCCTCTGGTTTA+CGG + tig0022368:14506-14525 None:intergenic 45.0%
GTAAACCAGAGGAAGAGGAA+GGG - tig0022368:14505-14524 Msa1399480:intron 45.0%
TAAACCAGAGGAAGAGGAAG+GGG - tig0022368:14506-14525 Msa1399480:intron 45.0%
! GAAGGGGGTGAGATTGTTTT+CGG - tig0022368:14522-14541 Msa1399480:intron 45.0%
TGTTGATCCTGCTCACTACA+AGG - tig0022368:14548-14567 Msa1399480:intron 45.0%
GTTGATCCTGCTCACTACAA+GGG - tig0022368:14549-14568 Msa1399480:intron 45.0%
TGATTTCCCTTGTAGTGAGC+AGG + tig0022368:14558-14577 None:intergenic 45.0%
!! TGTTCGGCAATTGCTGACTT+GGG - tig0022368:14874-14893 Msa1399480:intron 45.0%
AGAGTGCAAGACCATTGTTG+CGG - tig0022368:15046-15065 Msa1399480:intron 45.0%
AAGACCATTGTTGCGGAGTA+TGG - tig0022368:15053-15072 Msa1399480:intron 45.0%
TTGTCCATACTCCGCAACAA+TGG + tig0022368:15060-15079 None:intergenic 45.0%
TCTTCTTTGGCTGTGCCTAA+AGG + tig0022368:15233-15252 None:intergenic 45.0%
CTTGTGAGATGGCAGTTGTT+TGG - tig0022368:15498-15517 Msa1399480:intron 45.0%
!!! AATAAATTTTTAACAAAAAA+GGG + tig0022368:14389-14408 None:intergenic 5.0%
AAACCTCACTGTTACCGTCC+TGG - tig0022368:13272-13291 Msa1399480:intron 50.0%
! TGGTGGACCTGTATTTGGCA+TGG + tig0022368:13458-13477 None:intergenic 50.0%
GCCACCAAAAAGGTAACACC+GGG + tig0022368:14145-14164 None:intergenic 50.0%
GGCCACCAAAAAGGTAACAC+CGG + tig0022368:14146-14165 None:intergenic 50.0%
TGCCTTGCAAATGCTTGGCA+AGG - tig0022368:14286-14305 Msa1399480:CDS 50.0%
GTAAGGCTGCCACTATGAAC+GGG + tig0022368:14354-14373 None:intergenic 50.0%
AAGGGAAGCTTGGAGCTGTA+AGG + tig0022368:14371-14390 None:intergenic 50.0%
TTGGCTCAACCGTAAACCAG+AGG - tig0022368:14494-14513 Msa1399480:intron 50.0%
CAACCGTAAACCAGAGGAAG+AGG - tig0022368:14500-14519 Msa1399480:intron 50.0%
CGTAAACCAGAGGAAGAGGA+AGG - tig0022368:14504-14523 Msa1399480:intron 50.0%
AAACCAGAGGAAGAGGAAGG+GGG - tig0022368:14507-14526 Msa1399480:intron 50.0%
CAGCCATCAACGCAATATCC+TGG + tig0022368:14856-14875 None:intergenic 50.0%
! CTGTTCGGCAATTGCTGACT+TGG - tig0022368:14873-14892 Msa1399480:intron 50.0%
GGCTGTGCCTAAAGGAGTAA+AGG + tig0022368:15225-15244 None:intergenic 50.0%
!! TGCACTTTTGATGGCACTCG+TGG - tig0022368:15273-15292 Msa1399480:intron 50.0%
TTTGGATGCAGAACCAGCTG+AGG - tig0022368:15516-15535 Msa1399480:intron 50.0%
GATGATTCTCCCATTGGGCT+AGG + tig0022368:15677-15696 None:intergenic 50.0%
TGCACTTCAGGAAGCAGTTG+AGG - tig0022368:16115-16134 Msa1399480:CDS 50.0%
GTTCCAGGACGGTAACAGTG+AGG + tig0022368:13278-13297 None:intergenic 55.0%
!!! GGAGCCCGGTGTTACCTTTT+TGG - tig0022368:14138-14157 Msa1399480:intron 55.0%
!!! GCCCGGTGTTACCTTTTTGG+TGG - tig0022368:14141-14160 Msa1399480:intron 55.0%
! GGGGGTGAGATTGTTTTCGG+TGG - tig0022368:14525-14544 Msa1399480:intron 55.0%
! GGCACTCGTGGTGTTGAGTA+AGG - tig0022368:15285-15304 Msa1399480:intron 55.0%
!! GGGTCTTATTCTGCCTCAGC+TGG + tig0022368:15532-15551 None:intergenic 55.0%
AACTTTCGACCTTGCCCCAG+AGG - tig0022368:15754-15773 Msa1399480:intron 55.0%
AACTACTCCCAGAGACACCC+TGG - tig0022368:16005-16024 Msa1399480:intron 55.0%
ACTACTCCCAGAGACACCCT+GGG - tig0022368:16006-16025 Msa1399480:intron 55.0%
! TTCTAGCCCAGGGTGTCTCT+GGG + tig0022368:16015-16034 None:intergenic 55.0%
! TTTCTAGCCCAGGGTGTCTC+TGG + tig0022368:16016-16035 None:intergenic 55.0%
CCTGAAGTGCAAGAACTGCG+TGG + tig0022368:16106-16125 None:intergenic 55.0%
CCACGCAGTTCTTGCACTTC+AGG - tig0022368:16103-16122 Msa1399480:CDS 55.0%
GAAGTGCGACGGTTCCAGGA+CGG + tig0022368:13289-13308 None:intergenic 60.0%
GTCCTGGAACCGTCGCACTT+CGG - tig0022368:13288-13307 Msa1399480:intron 60.0%
TACCGAAGTGCGACGGTTCC+AGG + tig0022368:13293-13312 None:intergenic 60.0%
TCACCCCCTTCCTCTTCCTC+TGG + tig0022368:14513-14532 None:intergenic 60.0%
TTTCGACCTTGCCCCAGAGG+AGG - tig0022368:15757-15776 Msa1399480:intron 60.0%
!! GTCATACCTCCTCTGGGGCA+AGG + tig0022368:15766-15785 None:intergenic 60.0%
GGGACGTCATACCTCCTCTG+GGG + tig0022368:15771-15790 None:intergenic 60.0%
GGGGACGTCATACCTCCTCT+GGG + tig0022368:15772-15791 None:intergenic 60.0%
TGGGGACGTCATACCTCCTC+TGG + tig0022368:15773-15792 None:intergenic 60.0%
GTGCAAGAACTGCGTGGCTC+TGG + tig0022368:16100-16119 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0022368 gene 13176 16154 13176 ID=Msa1399480;Name=Msa1399480
tig0022368 mRNA 13176 16154 13176 ID=Msa1399480-mRNA-1;Parent=Msa1399480;Name=Msa1399480-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0.09|0.08|0.83|0.72|0.83|12|0|370
tig0022368 exon 16021 16154 16021 ID=Msa1399480-mRNA-1:exon:17243;Parent=Msa1399480-mRNA-1
tig0022368 exon 15861 15889 15861 ID=Msa1399480-mRNA-1:exon:17242;Parent=Msa1399480-mRNA-1
tig0022368 exon 15319 15413 15319 ID=Msa1399480-mRNA-1:exon:17241;Parent=Msa1399480-mRNA-1
tig0022368 exon 15103 15212 15103 ID=Msa1399480-mRNA-1:exon:17240;Parent=Msa1399480-mRNA-1
tig0022368 exon 14716 14884 14716 ID=Msa1399480-mRNA-1:exon:17239;Parent=Msa1399480-mRNA-1
tig0022368 exon 14581 14620 14581 ID=Msa1399480-mRNA-1:exon:17238;Parent=Msa1399480-mRNA-1
tig0022368 exon 14466 14473 14466 ID=Msa1399480-mRNA-1:exon:17237;Parent=Msa1399480-mRNA-1
tig0022368 exon 14224 14337 14224 ID=Msa1399480-mRNA-1:exon:17236;Parent=Msa1399480-mRNA-1
tig0022368 exon 14029 14093 14029 ID=Msa1399480-mRNA-1:exon:17235;Parent=Msa1399480-mRNA-1
tig0022368 exon 13750 13906 13750 ID=Msa1399480-mRNA-1:exon:17234;Parent=Msa1399480-mRNA-1
tig0022368 exon 13552 13671 13552 ID=Msa1399480-mRNA-1:exon:17233;Parent=Msa1399480-mRNA-1
tig0022368 exon 13176 13247 13176 ID=Msa1399480-mRNA-1:exon:17232;Parent=Msa1399480-mRNA-1
tig0022368 CDS 16021 16154 16021 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 15861 15889 15861 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 15319 15413 15319 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 15103 15212 15103 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 14716 14884 14716 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 14581 14620 14581 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 14466 14473 14466 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 14224 14337 14224 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 14029 14093 14029 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 13750 13906 13750 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 13552 13671 13552 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
tig0022368 CDS 13176 13247 13176 ID=Msa1399480-mRNA-1:cds;Parent=Msa1399480-mRNA-1
Gene Sequence

>Msa1399480

TGTTTCGTTTTCTACGATTCGAATTTTTCGATTAATTTCATCGCTTTTTTCGTTCATGCTGCTAGGAAATCTGCTCCTACTACTGGAGGAGTGAAAAAACCTCACTGTTACCGTCCTGGAACCGTCGCACTTCGGTTGCATGCTACTTCCATGCCAAATACAGGGAATGCTGCTGCAATTCAATATGGTACTGGAGCAATTTCTGGTTTCTTTAGCTATGACAATGTTAAAGTGGGCGACATAGTTGTAAAGAACCAGGAGTTTATTGAAGCAACTAAGGAGCCCGGTGTTACCTTTTTGGTGGCCAAGTTTGATGGTATATTGGGACTTGGATTTCAAGTGATATCAGTTGGAAATGCTGTTCCAGTGTATAATATGGTTGAACAAGGTCTTATCCAGGAACCAGTATTTTCATTTTGGCTCAACCGTAAACCAGAGGAAGAGGAAGGGGGTGAGATTGTTTTCGGTGGTGTTGATCCTGCTCACTACAAGGGAAATCACACTTATGTGCCTGTGACAAGAAAAGGATATTGGCAGTTTGATATGGGAGATGTAACTATTGATGGTAAATCAACTGGATATTGCACTGTAATTACCATGATAAATCATGCAATTGGAGCATCAGGAGTTGTAAGCAAAGAGTGCAAGACCATTGTTGCGGAGTATGGACAAACAATATTGAACTTACTTTTAGCTGAAGCACAGCCAAAGAAGATCTGTTCCGAAATTGGATTATGCACTTTTGATGGCACTCGTGGTGTTGATTTTTCTATCGAGAGTGTAGTGGACGAAAATGAAAGGAAATCATCTAGTGGTCTTCACGGTGCTTCTTGTTCTGCTTGTGAGATGGCAGTTGTTTGGATGCAGAACCAGCTGAGGCAGAATAAGACCCAAGATCAGATACTAACCTATATCAATAATCTTTGTGATAAAATGCCTAGCCCAATGGGAGAATCATCTGTTGACTGTGAGAATATCTCTTTGTTGCCTGTAATTTCCTTCACAATTGGTGGAAGAACTTTCGACCTTGCCCCAGAGGAGACGGATCTGAGATTCCAGAGCCACGCAGTTCTTGCACTTCAGGAAGCAGTTGAGGCTTATTTTGGATTATGA

Protein sequence

>Msa1399480

CFVFYDSNFSINFIAFFVHAARKSAPTTGGVKKPHCYRPGTVALRLHATSMPNTGNAAAIQYGTGAISGFFSYDNVKVGDIVVKNQEFIEATKEPGVTFLVAKFDGILGLGFQVISVGNAVPVYNMVEQGLIQEPVFSFWLNRKPEEEEGGEIVFGGVDPAHYKGNHTYVPVTRKGYWQFDMGDVTIDGKSTGYCTVITMINHAIGASGVVSKECKTIVAEYGQTILNLLLAEAQPKKICSEIGLCTFDGTRGVDFSIESVVDENERKSSSGLHGASCSACEMAVVWMQNQLRQNKTQDQILTYINNLCDKMPSPMGESSVDCENISLLPVISFTIGGRTFDLAPEETDLRFQSHAVLALQEAVEAYFGL*