AlfalfaGEDB | Msa0382700

M. sativa cultivar zhongmu-4 / Msa0382700

KEGG: -
GO: GO:0001101 GO:0002229 GO:0002239 GO:0002376 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009682 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009753 GO:0009755 GO:0009787 GO:0009867 GO:0009889 GO:0009966 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010468 GO:0010556 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0023052 GO:0031323 GO:0031326 GO:0031347 GO:0032870 GO:0032879 GO:0033993 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0048583 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071395 GO:0071396 GO:0071495 GO:0080090 GO:0080134 GO:0097305 GO:0097306 GO:0098542 GO:0140110 GO:1901419 GO:1901700 GO:1901701 GO:1903506 GO:1905957 GO:2000022 GO:2000071 GO:2000112 GO:2001141
PFAM: PF00046.32

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382700	XP_003603420.1	90.964	332	17	3	1	321	1	330	0.0	549

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382700	sp\|Q8H0V5\|OCP3_ARATH	48.659	261	127	1	61	314	91	351	3.30e-66	214

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382700	G7JB43	90.964	332	17	3	1	321	1	330	0.0	549

TFs/TRs:

Gene ID	Type	Classification
Msa0382700	TF	HB-other

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0382700	Msa0463150	0.840483	8.463596e-58	-8.615850e-47
Msa0382700	Msa0964650	0.801020	1.096575e-48	-8.615850e-47
Msa0382700	Msa0970090	0.815881	7.364400e-52	-8.615850e-47
Msa0382700	Msa1157330	0.810132	1.341964e-50	-8.615850e-47
Msa0382700	Msa1214560	0.820660	6.098558e-53	-8.615850e-47
Msa0382700	Msa1262290	0.822791	1.960909e-53	-8.615850e-47
Msa0382700	Msa1388520	0.808517	2.979631e-50	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382700	MtrunA17_Chr3g0137971	90.964	332	17	3	1	321	1	330	0.0	549

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0382700	AT5G11270.1	48.659	261	127	1	61	314	91	351	3.35e-67	214

Find 66 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GAATCTCCGGGCGTAGTTTC+AGG	0.263805	3_1:+85447680	None:intergenic
GGTGATACTGCTGATGGTTT+AGG	0.275225	3_1:+85447701	None:intergenic
TGAATGCTGATGGTGATTAT+TGG	0.310496	3_1:-85446230	Msa0382700:three_prime_UTR
CACCAGCCTTGATCACGCTT+GGG	0.331948	3_1:-85446284	Msa0382700:three_prime_UTR
TTCTCGAAAGAGATTGAAAA+AGG	0.338696	3_1:-85447564	Msa0382700:CDS
GATCATGCTCATGCAGAATC+TGG	0.343580	3_1:-85447635	Msa0382700:CDS
GCTTGGGGTTGAGTTATATA+AGG	0.343854	3_1:-85446268	Msa0382700:three_prime_UTR
TCAGTTTACACCACGGGGAT+GGG	0.412949	3_1:+85449453	None:intergenic
TTCGCTGCAAAGAAGAGGAT+TGG	0.420945	3_1:+85449384	None:intergenic
AAAATGAATACGAGAACATT+TGG	0.422236	3_1:+85446148	None:intergenic
GCTGATGGTTTAGGTTCATC+AGG	0.425177	3_1:+85447710	None:intergenic
TTCATGACATGCAACAGAAT+TGG	0.427701	3_1:-85447589	Msa0382700:CDS
TTCTTTATGAAAAGAATCTC+CGG	0.439788	3_1:+85447667	None:intergenic
CTCAGTTTACACCACGGGGA+TGG	0.443413	3_1:+85449452	None:intergenic
CTCAACCCCAAGCGTGATCA+AGG	0.446457	3_1:+85446278	None:intergenic
TCACCAGCCTTGATCACGCT+TGG	0.449052	3_1:-85446285	Msa0382700:three_prime_UTR
CGCGGAGAACAGTTATTAAG+TGG	0.452000	3_1:-85446463	Msa0382700:CDS
TCGCTGCAAAGAAGAGGATT+GGG	0.456309	3_1:+85449385	None:intergenic
TTCTGTTGCATGTCATGAAT+AGG	0.457484	3_1:+85447593	None:intergenic
TTGGCTAGAGCATTGAAAAC+TGG	0.460688	3_1:-85448831	Msa0382700:CDS
ATAGGTAAGTTAGACTTCTT+CGG	0.466152	3_1:+85447611	None:intergenic
CGTGAGTTGGAAGGTGTGTT+GGG	0.479759	3_1:-85448978	Msa0382700:CDS
TCATTAGCAGACTGCTGGTA+AGG	0.483094	3_1:+85446395	None:intergenic
TTGTTTCATTAGCAGACTGC+TGG	0.483884	3_1:+85446390	None:intergenic
TGTTTGAAAAGCAACTCAAA+TGG	0.492775	3_1:+85449101	None:intergenic
ATTCGCTGAAGCTTAGAACT+TGG	0.492933	3_1:-85448866	Msa0382700:CDS
CAGTTTACACCACGGGGATG+GGG	0.503270	3_1:+85449454	None:intergenic
AAAGGCTTACACTTAGTTTG+CGG	0.505407	3_1:+85448805	None:intergenic
ACCCCAAGCGTGATCAAGGC+TGG	0.508368	3_1:+85446282	None:intergenic
TGCTTTGTTAGAACGTGAGT+TGG	0.513640	3_1:-85448991	Msa0382700:CDS
CTCAGCATCAGAAGACTTGG+TGG	0.517452	3_1:+85447743	None:intergenic
AGCTCTATCAAGACAGAGCT+CGG	0.525713	3_1:+85447793	None:intergenic
AGAGCGAGAAGGAAGAGTGA+AGG	0.528288	3_1:+85449346	None:intergenic
ACGTGAGTTGGAAGGTGTGT+TGG	0.531369	3_1:-85448979	Msa0382700:CDS
AGAGTGAAGGAGAAGAGAAG+AGG	0.540225	3_1:+85449359	None:intergenic
AGACAAACGTGCCGAGGAGG+GGG	0.542683	3_1:-85446435	Msa0382700:CDS
ACCAGCCTTGATCACGCTTG+GGG	0.548676	3_1:-85446283	Msa0382700:three_prime_UTR
GTTTCAGGTGATACTGCTGA+TGG	0.555775	3_1:+85447695	None:intergenic
AGGCTCAGCATCAGAAGACT+TGG	0.557597	3_1:+85447740	None:intergenic
CGGTGACAATTGAAGAGTAG+AGG	0.560168	3_1:+85449318	None:intergenic
TGGTAAGGAAGACGATGCTC+TGG	0.560826	3_1:+85446410	None:intergenic
AAATTGACTCATGTTACAGA+GGG	0.567201	3_1:-85449140	Msa0382700:CDS
AACTTGGCAATTGAATACAT+TGG	0.575518	3_1:-85448850	Msa0382700:CDS
AGCATCAGAAGACTTGGTGG+AGG	0.576518	3_1:+85447746	None:intergenic
TAGGTTCATCAGGAATCGAT+AGG	0.584575	3_1:+85447720	None:intergenic
TCTTTATGAAAAGAATCTCC+GGG	0.584998	3_1:+85447668	None:intergenic
GTATCACCTGAAACTACGCC+CGG	0.589871	3_1:-85447686	Msa0382700:CDS
GAAGACAAACGTGCCGAGGA+GGG	0.595141	3_1:-85446437	Msa0382700:CDS
CAGTGTTTAGTCACAGTCAG+AGG	0.597333	3_1:-85449410	Msa0382700:CDS
AAAGGCTCAACTTGACACGC+TGG	0.611700	3_1:-85447546	Msa0382700:CDS
TTGTTAGAACGTGAGTTGGA+AGG	0.619119	3_1:-85448987	Msa0382700:CDS
TGAAGACAAACGTGCCGAGG+AGG	0.619168	3_1:-85446438	Msa0382700:CDS
AAGACAAACGTGCCGAGGAG+GGG	0.620622	3_1:-85446436	Msa0382700:CDS
GAAGTACTGCTGAATGCTGA+TGG	0.624828	3_1:-85446240	Msa0382700:three_prime_UTR
TGCATGTTTCAAACATTCCG+CGG	0.630435	3_1:-85446481	Msa0382700:CDS
GACTAAACACTGATTCGCGA+CGG	0.635511	3_1:+85449421	None:intergenic
AAAATTGACTCATGTTACAG+AGG	0.638213	3_1:-85449141	Msa0382700:CDS
GCATCAGAAGACTTGGTGGA+GGG	0.649310	3_1:+85447747	None:intergenic
GTTTGAAGACAAACGTGCCG+AGG	0.651860	3_1:-85446441	Msa0382700:CDS
TGTTACAGAGGGGAATGACG+AGG	0.686418	3_1:-85449129	Msa0382700:CDS
TACAGAGGGGAATGACGAGG+AGG	0.700089	3_1:-85449126	Msa0382700:CDS
CCTTCAAAACCCCATCCCCG+TGG	0.704755	3_1:-85449463	Msa0382700:five_prime_UTR
ACAGATATCAGCGAAACACA+AGG	0.708447	3_1:-85448930	Msa0382700:CDS
CACTTAATAACTGTTCTCCG+CGG	0.713242	3_1:+85446464	None:intergenic
GAGTTTACATGAGATCAAAG+CGG	0.731573	3_1:-85447520	Msa0382700:CDS
AATTGACTCATGTTACAGAG+GGG	0.739510	3_1:-85449139	Msa0382700:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAAGCATAGAATAATAAATT+AGG	+	chr3_1:85446438-85446457	None:intergenic	15.0%
!!	CTAAAAATACAAAATTCAAA+AGG	+	chr3_1:85446840-85446859	None:intergenic	15.0%
!!	AATTAAACTCAAAACAAATT+AGG	+	chr3_1:85446863-85446882	None:intergenic	15.0%
!!	AATTTAATAGTGAGATTTAT+TGG	+	chr3_1:85448827-85448846	None:intergenic	15.0%
!!	TTCCAAAAAGAAAAACAATA+AGG	-	chr3_1:85446333-85446352	Msa0382700:three_prime_UTR	20.0%
!!!	AACCTTATTGTTTTTCTTTT+TGG	+	chr3_1:85446338-85446357	None:intergenic	20.0%
!!	TATGAATCATTGAATTGTAT+TGG	+	chr3_1:85446404-85446423	None:intergenic	20.0%
!!	TTAATTCATATATACAACGT+TGG	+	chr3_1:85446944-85446963	None:intergenic	20.0%
!!	GAATAAAAAGTTTAAGCAAA+TGG	+	chr3_1:85447198-85447217	None:intergenic	20.0%
!!	TTTATATTAAGAATCTCAGA+TGG	-	chr3_1:85447602-85447621	Msa0382700:CDS	20.0%
!!!	AAGATTTTACTAGTTATGTA+TGG	+	chr3_1:85448247-85448266	None:intergenic	20.0%
!!	ACATTTGATATATTTAGCAT+CGG	-	chr3_1:85448633-85448652	Msa0382700:intron	20.0%
!!!	TTTTTGAGGAATTTGATAAT+TGG	+	chr3_1:85449433-85449452	None:intergenic	20.0%
!!!	ATTGTTTTTCTTTTTGGAAG+AGG	+	chr3_1:85446332-85446351	None:intergenic	25.0%
!	AATTGTATTGGATTTGGATT+TGG	+	chr3_1:85446392-85446411	None:intergenic	25.0%
!	TCATTGAATTGTATTGGATT+TGG	+	chr3_1:85446398-85446417	None:intergenic	25.0%
!	AATGATGTAGAAAAAAGTAG+TGG	-	chr3_1:85446721-85446740	Msa0382700:intron	25.0%
!	ATATATACAACGTTGGTATT+TGG	+	chr3_1:85446937-85446956	None:intergenic	25.0%
!	ATGATATGAATAGGATTACT+TGG	-	chr3_1:85447041-85447060	Msa0382700:intron	25.0%
!	AATGTTAGTAGTTAGTTAGT+TGG	-	chr3_1:85447329-85447348	Msa0382700:intron	25.0%
!	TAGTATATTTGCCTTTAATC+AGG	+	chr3_1:85447498-85447517	None:intergenic	25.0%
!!	CTAGTTGATATATTAAAGAG+TGG	-	chr3_1:85447515-85447534	Msa0382700:CDS	25.0%
!	TTCTTTATGAAAAGAATCTC+CGG	+	chr3_1:85447960-85447979	None:intergenic	25.0%
!	AAACTTGTGATATTGAAGTA+TGG	+	chr3_1:85448150-85448169	None:intergenic	25.0%
!!	CTTCAATATCACAAGTTTTA+TGG	-	chr3_1:85448152-85448171	Msa0382700:intron	25.0%
!	AAACTTGTGATATTGAAGTA+TGG	+	chr3_1:85448150-85448169	None:intergenic	25.0%
!!	CTTCAATATCACAAGTTTTA+TGG	-	chr3_1:85448152-85448171	Msa0382700:intron	25.0%
!	ACATAACTTCTGATTTAAGA+GGG	+	chr3_1:85448334-85448353	None:intergenic	25.0%
!!	GTGACTTTTTAATCTAATGA+TGG	-	chr3_1:85448861-85448880	Msa0382700:CDS	25.0%
!	AATAGAATATATGCACAAAG+AGG	+	chr3_1:85448941-85448960	None:intergenic	25.0%
!	AGTTAACAAGTTGTGAAATA+AGG	+	chr3_1:85449063-85449082	None:intergenic	25.0%
!!	TTTGGTATTTGACATTTTAG+CGG	+	chr3_1:85449461-85449480	None:intergenic	25.0%
!	AAAATGAATACGAGAACATT+TGG	+	chr3_1:85449479-85449498	None:intergenic	25.0%
!	ATTTTTCTCAGTTTACACCA+CGG	+	chr3_1:85446181-85446200	None:intergenic	30.0%
!	ATTGGATTTGGATTTGGAAT+TGG	+	chr3_1:85446386-85446405	None:intergenic	30.0%
!	AAAATTGACTCATGTTACAG+AGG	-	chr3_1:85446483-85446502	Msa0382700:CDS	30.0%
!	AAATTGACTCATGTTACAGA+GGG	-	chr3_1:85446484-85446503	Msa0382700:CDS	30.0%
	TGTTTGAAAAGCAACTCAAA+TGG	+	chr3_1:85446526-85446545	None:intergenic	30.0%
	AACTTGGCAATTGAATACAT+TGG	-	chr3_1:85446774-85446793	Msa0382700:intron	30.0%
	GTGTATCAGATGATATGAAT+AGG	-	chr3_1:85447032-85447051	Msa0382700:intron	30.0%
	ATCATACAGGTATTTCATGT+AGG	+	chr3_1:85447103-85447122	None:intergenic	30.0%
	AAATGCAGATCATATCATAC+AGG	+	chr3_1:85447116-85447135	None:intergenic	30.0%
	TCTTAAACACTTGTCTTGTA+TGG	+	chr3_1:85447147-85447166	None:intergenic	30.0%
	TTAAGAAACCAAAATGCTTG+TGG	-	chr3_1:85447161-85447180	Msa0382700:intron	30.0%
	CCTTATCAATGAATGACAAA+AGG	+	chr3_1:85447272-85447291	None:intergenic	30.0%
!	CCTTTTGTCATTCATTGATA+AGG	-	chr3_1:85447269-85447288	Msa0382700:intron	30.0%
!!!	TTACTTTTTCTTGTCCCTAA+AGG	+	chr3_1:85447449-85447468	None:intergenic	30.0%
!	ATACATCCAAGTTGAAGTTA+AGG	+	chr3_1:85447572-85447591	None:intergenic	30.0%
	TTATCTGCAACAAATTCGAA+AGG	+	chr3_1:85447799-85447818	None:intergenic	30.0%
	TCTTTATGAAAAGAATCTCC+GGG	+	chr3_1:85447959-85447978	None:intergenic	30.0%
	ATAGGTAAGTTAGACTTCTT+CGG	+	chr3_1:85448016-85448035	None:intergenic	30.0%
	TTCTCGAAAGAGATTGAAAA+AGG	-	chr3_1:85448060-85448079	Msa0382700:intron	30.0%
	ATGGCAAGTTTAACTATGTA+TGG	+	chr3_1:85448189-85448208	None:intergenic	30.0%
	GACATAACTTCTGATTTAAG+AGG	+	chr3_1:85448335-85448354	None:intergenic	30.0%
	TGATGCTTGTATTAGTATTC+TGG	-	chr3_1:85448373-85448392	Msa0382700:intron	30.0%
	TTAACATGTATTGCAAGTCT+TGG	+	chr3_1:85448529-85448548	None:intergenic	30.0%
	TGGACGACTTGAAAATAAAT+GGG	-	chr3_1:85448592-85448611	Msa0382700:intron	30.0%
	AAATGGGGTAAATGTCATAT+AGG	-	chr3_1:85448608-85448627	Msa0382700:intron	30.0%
	AATGGGGTAAATGTCATATA+GGG	-	chr3_1:85448609-85448628	Msa0382700:intron	30.0%
!!	AGTGAGATTTATTGGTTCAA+TGG	+	chr3_1:85448819-85448838	None:intergenic	30.0%
	AATGCTATAATATGCAGTGA+TGG	+	chr3_1:85448989-85449008	None:intergenic	30.0%
!!!	TTTTAGCGGACTATTTTTTG+AGG	+	chr3_1:85449447-85449466	None:intergenic	30.0%
!	TTTTTCTCAGTTTACACCAC+GGG	+	chr3_1:85446180-85446199	None:intergenic	35.0%
	GTGGTGTAAACTGAGAAAAA+TGG	-	chr3_1:85446180-85446199	Msa0382700:three_prime_UTR	35.0%
!!	GTTTTTCTTTTTGGAAGAGG+CGG	+	chr3_1:85446329-85446348	None:intergenic	35.0%
!	AATTGACTCATGTTACAGAG+GGG	-	chr3_1:85446485-85446504	Msa0382700:CDS	35.0%
!	AAAGGCTTACACTTAGTTTG+CGG	+	chr3_1:85446822-85446841	None:intergenic	35.0%
	TCATCTGATACACTTAGTTG+TGG	+	chr3_1:85447025-85447044	None:intergenic	35.0%
!	TACTTGGTTTGAGTATGAAG+AGG	-	chr3_1:85447057-85447076	Msa0382700:intron	35.0%
!	ACTGTTTTCCACAAGCATTT+TGG	+	chr3_1:85447172-85447191	None:intergenic	35.0%
	GTCATTCATTGATAAGGAGA+AGG	-	chr3_1:85447275-85447294	Msa0382700:intron	35.0%
	AGGAGAAGGAAAAAGTAAAC+TGG	-	chr3_1:85447289-85447308	Msa0382700:intron	35.0%
	TAGTAGTTAGTTAGTTGGTC+AGG	-	chr3_1:85447334-85447353	Msa0382700:intron	35.0%
	AGTAGTTAGTTAGTTGGTCA+GGG	-	chr3_1:85447335-85447354	Msa0382700:intron	35.0%
	GGTGTTTGCAAGCAAATTAA+CGG	+	chr3_1:85447551-85447570	None:intergenic	35.0%
	CAAACACCTTAACTTCAACT+TGG	-	chr3_1:85447563-85447582	Msa0382700:CDS	35.0%
	CAATCCCTAATGTTAACTTC+CGG	-	chr3_1:85447755-85447774	Msa0382700:CDS	35.0%
	TTCTGTTGCATGTCATGAAT+AGG	+	chr3_1:85448034-85448053	None:intergenic	35.0%
	TTCATGACATGCAACAGAAT+TGG	-	chr3_1:85448035-85448054	Msa0382700:intron	35.0%
	GAGTTTACATGAGATCAAAG+CGG	-	chr3_1:85448104-85448123	Msa0382700:intron	35.0%
!	TGGCAAGTTTAACTTACAGT+GGG	+	chr3_1:85448130-85448149	None:intergenic	35.0%
!	ATGGCAAGTTTAACTTACAG+TGG	+	chr3_1:85448131-85448150	None:intergenic	35.0%
!!	TACACTCCATTTTTCTAGTC+CGG	-	chr3_1:85448300-85448319	Msa0382700:intron	35.0%
	GCATACATGATGATACAACT+GGG	+	chr3_1:85448422-85448441	None:intergenic	35.0%
	AGCATACATGATGATACAAC+TGG	+	chr3_1:85448423-85448442	None:intergenic	35.0%
	GTGGACGACTTGAAAATAAA+TGG	-	chr3_1:85448591-85448610	Msa0382700:intron	35.0%
	GGACGACTTGAAAATAAATG+GGG	-	chr3_1:85448593-85448612	Msa0382700:intron	35.0%
	ATGGGGTAAATGTCATATAG+GGG	-	chr3_1:85448610-85448629	Msa0382700:intron	35.0%
!	CAAAGAAGCATATAAGGTGA+TGG	+	chr3_1:85448734-85448753	None:intergenic	35.0%
	ACCTTATATGCTTCTTTGTG+CGG	-	chr3_1:85448736-85448755	Msa0382700:intron	35.0%
!!	GAGATTTATTGGTTCAATGG+TGG	+	chr3_1:85448816-85448835	None:intergenic	35.0%
!	TGAATGCTGATGGTGATTAT+TGG	-	chr3_1:85449394-85449413	Msa0382700:CDS	35.0%
!	TTTTCTCAGTTTACACCACG+GGG	+	chr3_1:85446179-85446198	None:intergenic	40.0%
!	TGCTTTGTTAGAACGTGAGT+TGG	-	chr3_1:85446633-85446652	Msa0382700:intron	40.0%
!	TTGTTAGAACGTGAGTTGGA+AGG	-	chr3_1:85446637-85446656	Msa0382700:intron	40.0%
	ACAGATATCAGCGAAACACA+AGG	-	chr3_1:85446694-85446713	Msa0382700:intron	40.0%
	GTAGAAAAAAGTAGTGGCGA+TGG	-	chr3_1:85446727-85446746	Msa0382700:intron	40.0%
	ATTCGCTGAAGCTTAGAACT+TGG	-	chr3_1:85446758-85446777	Msa0382700:intron	40.0%
!!	TTGGCTAGAGCATTGAAAAC+TGG	-	chr3_1:85446793-85446812	Msa0382700:intron	40.0%
!!	TCTGATTTGCTTCCTTGACT+TGG	-	chr3_1:85447246-85447265	Msa0382700:intron	40.0%
	AATGACAAAAGGCCAAGTCA+AGG	+	chr3_1:85447261-85447280	None:intergenic	40.0%
	GGAAAACAGGAAATGCTAGT+AGG	-	chr3_1:85447356-85447375	Msa0382700:intron	40.0%
	AAACAGGAAATGCTAGTAGG+AGG	-	chr3_1:85447359-85447378	Msa0382700:intron	40.0%
	AACAGGAAATGCTAGTAGGA+GGG	-	chr3_1:85447360-85447379	Msa0382700:intron	40.0%
	CTCCTGCTTAGAACTTCTTT+GGG	-	chr3_1:85447397-85447416	Msa0382700:intron	40.0%
	TCCTGCTTAGAACTTCTTTG+GGG	-	chr3_1:85447398-85447417	Msa0382700:intron	40.0%
!	AGTAGTGTAGTGGTTTGGAT+TGG	+	chr3_1:85447426-85447445	None:intergenic	40.0%
	AAAGGAGTAGTGTAGTGGTT+TGG	+	chr3_1:85447431-85447450	None:intergenic	40.0%
	AACCACTACACTACTCCTTT+AGG	-	chr3_1:85447431-85447450	Msa0382700:intron	40.0%
	ACCACTACACTACTCCTTTA+GGG	-	chr3_1:85447432-85447451	Msa0382700:intron	40.0%
	GTAAACTTGATAGATCAGCC+AGG	-	chr3_1:85447465-85447484	Msa0382700:intron	40.0%
!!	TCAGATGGATTTTCCTTGCA+AGG	-	chr3_1:85447617-85447636	Msa0382700:CDS	40.0%
!!	CAGATGGATTTTCCTTGCAA+GGG	-	chr3_1:85447618-85447637	Msa0382700:CDS	40.0%
!!	AGATGGATTTTCCTTGCAAG+GGG	-	chr3_1:85447619-85447638	Msa0382700:CDS	40.0%
	GTTCATGTGATAAAGCGAGA+AGG	-	chr3_1:85447668-85447687	Msa0382700:CDS	40.0%
	ATAAAGCGAGAAGGAAAGAG+AGG	-	chr3_1:85447677-85447696	Msa0382700:CDS	40.0%
	TAAAGCGAGAAGGAAAGAGA+GGG	-	chr3_1:85447678-85447697	Msa0382700:CDS	40.0%
	GAGTCCGGAAGTTAACATTA+GGG	+	chr3_1:85447762-85447781	None:intergenic	40.0%
	TGAGTCCGGAAGTTAACATT+AGG	+	chr3_1:85447763-85447782	None:intergenic	40.0%
	GTGAAACTGAGAAATGAGTC+CGG	+	chr3_1:85447777-85447796	None:intergenic	40.0%
	TAGGTTCATCAGGAATCGAT+AGG	+	chr3_1:85447907-85447926	None:intergenic	40.0%
	ATTTAAGAGGGAATTGCTGC+CGG	+	chr3_1:85448322-85448341	None:intergenic	40.0%
!	ACGATATGACACTTAGCTTG+AGG	+	chr3_1:85448573-85448592	None:intergenic	40.0%
	TCAAGCTAAGTGTCATATCG+TGG	-	chr3_1:85448572-85448591	Msa0382700:intron	40.0%
!	AAGGTGATGGTTGACATTGT+GGG	+	chr3_1:85448721-85448740	None:intergenic	40.0%
!	TAAGGTGATGGTTGACATTG+TGG	+	chr3_1:85448722-85448741	None:intergenic	40.0%
	TCACTTGTGCACCATAGAAT+TGG	+	chr3_1:85448762-85448781	None:intergenic	40.0%
!	CAAAGAGGCTTTGTCTAACA+TGG	+	chr3_1:85448926-85448945	None:intergenic	40.0%
	AAAGTGACAAGCATGTGTCT+TGG	-	chr3_1:85449010-85449029	Msa0382700:CDS	40.0%
	TAGTTCAAGACAGACAGGTA+AGG	+	chr3_1:85449093-85449112	None:intergenic	40.0%
	CATTGTAGTTCAAGACAGAC+AGG	+	chr3_1:85449098-85449117	None:intergenic	40.0%
	TGCATGTTTCAAACATTCCG+CGG	-	chr3_1:85449143-85449162	Msa0382700:CDS	40.0%
	CACTTAATAACTGTTCTCCG+CGG	+	chr3_1:85449163-85449182	None:intergenic	40.0%
	TTGTTTCATTAGCAGACTGC+TGG	+	chr3_1:85449237-85449256	None:intergenic	40.0%
	GCTTGGGGTTGAGTTATATA+AGG	-	chr3_1:85449356-85449375	Msa0382700:CDS	40.0%
!!	GACTAAACACTGATTCGCGA+CGG	+	chr3_1:85446206-85446225	None:intergenic	45.0%
	CAGTGTTTAGTCACAGTCAG+AGG	-	chr3_1:85446214-85446233	Msa0382700:three_prime_UTR	45.0%
	TCGCTGCAAAGAAGAGGATT+GGG	+	chr3_1:85446242-85446261	None:intergenic	45.0%
	TTCGCTGCAAAGAAGAGGAT+TGG	+	chr3_1:85446243-85446262	None:intergenic	45.0%
!	AGGTTTTCGCTGCAAAGAAG+AGG	+	chr3_1:85446248-85446267	None:intergenic	45.0%
	AGAGTGAAGGAGAAGAGAAG+AGG	+	chr3_1:85446268-85446287	None:intergenic	45.0%
!!!	TAGAGGTTTTGAGAGCGAGA+AGG	+	chr3_1:85446292-85446311	None:intergenic	45.0%
	CGGTGACAATTGAAGAGTAG+AGG	+	chr3_1:85446309-85446328	None:intergenic	45.0%
	GTTAGTTGGTCAGGGAAAAC+AGG	-	chr3_1:85447343-85447362	Msa0382700:intron	45.0%
!!	AGTTCTAAGCAGGAGGTCTA+GGG	+	chr3_1:85447392-85447411	None:intergenic	45.0%
!!	AAGTTCTAAGCAGGAGGTCT+AGG	+	chr3_1:85447393-85447412	None:intergenic	45.0%
!!	CCAAAGAAGTTCTAAGCAGG+AGG	+	chr3_1:85447399-85447418	None:intergenic	45.0%
	CCTCCTGCTTAGAACTTCTT+TGG	-	chr3_1:85447396-85447415	Msa0382700:intron	45.0%
!!	ACCCCAAAGAAGTTCTAAGC+AGG	+	chr3_1:85447402-85447421	None:intergenic	45.0%
	TCCCTAAAGGAGTAGTGTAG+TGG	+	chr3_1:85447436-85447455	None:intergenic	45.0%
	ACTTGATAGATCAGCCAGGT+TGG	-	chr3_1:85447469-85447488	Msa0382700:intron	45.0%
	CTTGATAGATCAGCCAGGTT+GGG	-	chr3_1:85447470-85447489	Msa0382700:intron	45.0%
	TTGATAGATCAGCCAGGTTG+GGG	-	chr3_1:85447471-85447490	Msa0382700:intron	45.0%
	ATTGAGCAGACAACTAGCAC+AGG	+	chr3_1:85447739-85447758	None:intergenic	45.0%
	AGCTCTATCAAGACAGAGCT+CGG	+	chr3_1:85447834-85447853	None:intergenic	45.0%
!	GCTGATGGTTTAGGTTCATC+AGG	+	chr3_1:85447917-85447936	None:intergenic	45.0%
	GGTGATACTGCTGATGGTTT+AGG	+	chr3_1:85447926-85447945	None:intergenic	45.0%
!	GTTTCAGGTGATACTGCTGA+TGG	+	chr3_1:85447932-85447951	None:intergenic	45.0%
	GATCATGCTCATGCAGAATC+TGG	-	chr3_1:85447989-85448008	Msa0382700:intron	45.0%
!	TTGCTGCCGGACTAGAAAAA+TGG	+	chr3_1:85448309-85448328	None:intergenic	45.0%
!	GCCGCACAAAGAAGCATATA+AGG	+	chr3_1:85448740-85448759	None:intergenic	45.0%
	TCTTTGTGCGGCCAATTCTA+TGG	-	chr3_1:85448748-85448767	Msa0382700:intron	45.0%
	CGCGGAGAACAGTTATTAAG+TGG	-	chr3_1:85449161-85449180	Msa0382700:intron	45.0%
	TCATTAGCAGACTGCTGGTA+AGG	+	chr3_1:85449232-85449251	None:intergenic	45.0%
!!	GAAGTACTGCTGAATGCTGA+TGG	-	chr3_1:85449384-85449403	Msa0382700:CDS	45.0%
!!!	GGGATGGGGTTTTGAAGGTT+TGG	+	chr3_1:85446159-85446178	None:intergenic	50.0%
	TCAGTTTACACCACGGGGAT+GGG	+	chr3_1:85446174-85446193	None:intergenic	50.0%
	AGAGCGAGAAGGAAGAGTGA+AGG	+	chr3_1:85446281-85446300	None:intergenic	50.0%
	TGTTACAGAGGGGAATGACG+AGG	-	chr3_1:85446495-85446514	Msa0382700:CDS	50.0%
!	ACGTGAGTTGGAAGGTGTGT+TGG	-	chr3_1:85446645-85446664	Msa0382700:intron	50.0%
!	CGTGAGTTGGAAGGTGTGTT+GGG	-	chr3_1:85446646-85446665	Msa0382700:intron	50.0%
	CTTTAATCAGGACCCCAACC+TGG	+	chr3_1:85447486-85447505	None:intergenic	50.0%
!	CAGGTTGGGGTCCTGATTAA+AGG	-	chr3_1:85447484-85447503	Msa0382700:intron	50.0%
	TCAAACTTGCACCCCTTGCA+AGG	+	chr3_1:85447633-85447652	None:intergenic	50.0%
!	TGCAAGGGGTGCAAGTTTGA+AGG	-	chr3_1:85447633-85447652	Msa0382700:CDS	50.0%
!!	GCATCAGAAGACTTGGTGGA+GGG	+	chr3_1:85447880-85447899	None:intergenic	50.0%
!!	AGCATCAGAAGACTTGGTGG+AGG	+	chr3_1:85447881-85447900	None:intergenic	50.0%
	CTCAGCATCAGAAGACTTGG+TGG	+	chr3_1:85447884-85447903	None:intergenic	50.0%
	AGGCTCAGCATCAGAAGACT+TGG	+	chr3_1:85447887-85447906	None:intergenic	50.0%
	GTATCACCTGAAACTACGCC+CGG	-	chr3_1:85447938-85447957	Msa0382700:intron	50.0%
	AAAGGCTCAACTTGACACGC+TGG	-	chr3_1:85448078-85448097	Msa0382700:intron	50.0%
	GTGATGGTTGACATTGTGGG+AGG	+	chr3_1:85448718-85448737	None:intergenic	50.0%
	GTTTGAAGACAAACGTGCCG+AGG	-	chr3_1:85449183-85449202	Msa0382700:intron	50.0%
	TGGTAAGGAAGACGATGCTC+TGG	+	chr3_1:85449217-85449236	None:intergenic	50.0%
	CAGTTTACACCACGGGGATG+GGG	+	chr3_1:85446173-85446192	None:intergenic	55.0%
	CTCAGTTTACACCACGGGGA+TGG	+	chr3_1:85446175-85446194	None:intergenic	55.0%
	TACAGAGGGGAATGACGAGG+AGG	-	chr3_1:85446498-85446517	Msa0382700:CDS	55.0%
	GAATCTCCGGGCGTAGTTTC+AGG	+	chr3_1:85447947-85447966	None:intergenic	55.0%
	TGAAGACAAACGTGCCGAGG+AGG	-	chr3_1:85449186-85449205	Msa0382700:intron	55.0%
	GAAGACAAACGTGCCGAGGA+GGG	-	chr3_1:85449187-85449206	Msa0382700:intron	55.0%
	AAGACAAACGTGCCGAGGAG+GGG	-	chr3_1:85449188-85449207	Msa0382700:intron	55.0%
	TCACCAGCCTTGATCACGCT+TGG	-	chr3_1:85449339-85449358	Msa0382700:CDS	55.0%
	CACCAGCCTTGATCACGCTT+GGG	-	chr3_1:85449340-85449359	Msa0382700:CDS	55.0%
	ACCAGCCTTGATCACGCTTG+GGG	-	chr3_1:85449341-85449360	Msa0382700:CDS	55.0%
	CTCAACCCCAAGCGTGATCA+AGG	+	chr3_1:85449349-85449368	None:intergenic	55.0%
!!	CCACGGGGATGGGGTTTTGA+AGG	+	chr3_1:85446164-85446183	None:intergenic	60.0%
	CCTTCAAAACCCCATCCCCG+TGG	-	chr3_1:85446161-85446180	Msa0382700:three_prime_UTR	60.0%
	AGACAAACGTGCCGAGGAGG+GGG	-	chr3_1:85449189-85449208	Msa0382700:intron	60.0%
!!	ATGCTCTGGAACCCCCTCCT+CGG	+	chr3_1:85449203-85449222	None:intergenic	60.0%
	ACCCCAAGCGTGATCAAGGC+TGG	+	chr3_1:85449345-85449364	None:intergenic	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	85446122	85449524	85446122	ID=Msa0382700;Name=Msa0382700
chr3_1	mRNA	85446122	85449524	85446122	ID=Msa0382700-mRNA-1;Parent=Msa0382700;Name=Msa0382700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=77\|1\|1\|1\|1\|1\|4\|263\|321
chr3_1	exon	85446122	85446525	85446122	ID=Msa0382700-mRNA-1:exon:22391;Parent=Msa0382700-mRNA-1
chr3_1	exon	85447514	85447831	85447514	ID=Msa0382700-mRNA-1:exon:22390;Parent=Msa0382700-mRNA-1
chr3_1	exon	85448815	85449165	85448815	ID=Msa0382700-mRNA-1:exon:22389;Parent=Msa0382700-mRNA-1
chr3_1	exon	85449292	85449524	85449292	ID=Msa0382700-mRNA-1:exon:22388;Parent=Msa0382700-mRNA-1
chr3_1	five_prime_UTR	85449448	85449524	85449448	ID=Msa0382700-mRNA-1:five_prime_utr;Parent=Msa0382700-mRNA-1
chr3_1	CDS	85449292	85449447	85449292	ID=Msa0382700-mRNA-1:cds;Parent=Msa0382700-mRNA-1
chr3_1	CDS	85448815	85449165	85448815	ID=Msa0382700-mRNA-1:cds;Parent=Msa0382700-mRNA-1
chr3_1	CDS	85447514	85447831	85447514	ID=Msa0382700-mRNA-1:cds;Parent=Msa0382700-mRNA-1
chr3_1	CDS	85446385	85446525	85446385	ID=Msa0382700-mRNA-1:cds;Parent=Msa0382700-mRNA-1
chr3_1	three_prime_UTR	85446122	85446384	85446122	ID=Msa0382700-mRNA-1:three_prime_utr;Parent=Msa0382700-mRNA-1

Gene Sequence

>Msa0382700

ATGGCCGTCGCGAATCAGTGTTTAGTCACAGTCAGAGGAACCCAATCCTCTTCTTTGCAGCGAAAACCTCTTCTCTTCTCCTTCACTCTTCCTTCTCGCTCTCAAAACCTCTACTCTTCAATTGTCACCGCCTCTTCCAAAAAGAAAAACAATAAGAAAAAATTGACTCATGTTACAGAGGGGAATGACGAGGAGGATCCATTTGAGTTGCTTTTCAAACAACTCGAAGATGATCTCAAAAACGATGATGATTTGTCAAAAGAAGATAGCGATGACGACGACGACGACGAGATAAGTGAAGAAGATTTTGCTTTGTTAGAACGTGAGTTGGAAGGTGTGTTGGGTGAATTTGATGCTGAATTGTTGAACACAGATATCAGCGAAACACAAGGTGATAATGATGTAGAAAAAAGTAGTGGCGATGGAAATGATAATTCGCTGAAGCTTAGAACTTGGCAATTGAATACATTGGCTAGAGCATTGAAAACTGGACGCCGCAAACTAAGTATAAAAGCTCTTGCTGCCGAGCTCTGTCTTGATAGAGCTCTTGTTCTTGATTTGCTTCGTAACCCTCCACCAAGTCTTCTGATGCTGAGCCTATCGATTCCTGATGAACCTAAACCATCAGCAGTATCACCTGAAACTACGCCCGGAGATTCTTTTCATAAAGAAACAAGTGCAGATCATGCTCATGCAGAATCTGGACCGAAGAAGTCTAACTTACCTATTCATGACATGCAACAGAATTGGTCTTCTCGAAAGAGATTGAAAAAGGCTCAACTTGACACGCTGGAGAGAGTTTACATGAGATCAAAGCGGCCCACTAATGCAATGATTAGTAATATTGTGCATGTTTCAAACATTCCGCGGAGAACAGTTATTAAGTGGTTTGAAGACAAACGTGCCGAGGAGGGGGTTCCAGAGCATCGTCTTCCTTACCAGCAGTCTGCTAATGAAACAAGTTGA

Protein sequence

>Msa0382700

MAVANQCLVTVRGTQSSSLQRKPLLFSFTLPSRSQNLYSSIVTASSKKKNNKKKLTHVTEGNDEEDPFELLFKQLEDDLKNDDDLSKEDSDDDDDDEISEEDFALLERELEGVLGEFDAELLNTDISETQGDNDVEKSSGDGNDNSLKLRTWQLNTLARALKTGRRKLSIKALAAELCLDRALVLDLLRNPPPSLLMLSLSIPDEPKPSAVSPETTPGDSFHKETSADHAHAESGPKKSNLPIHDMQQNWSSRKRLKKAQLDTLERVYMRSKRPTNAMISNIVHVSNIPRRTVIKWFEDKRAEEGVPEHRLPYQQSANETS*