AlfalfaGEDB | Msa0970090

M. sativa cultivar zhongmu-4 / Msa0970090

KEGG: -
GO: -
PFAM: PF12049.11

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970090	XP_013450693.1	91.776	304	12	4	1	294	1	301	0.0	544

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970090	A0A072UG11	91.776	304	12	4	1	294	1	301	0.0	544

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001540	Msa0970090	0.834157	3.524934e-56	-8.615850e-47
Msa0003060	Msa0970090	0.800687	1.282512e-48	-8.615850e-47
Msa0003470	Msa0970090	0.808586	2.880034e-50	-8.615850e-47
Msa0012460	Msa0970090	0.837806	4.182079e-57	-8.615850e-47
Msa0014960	Msa0970090	0.800733	1.254964e-48	-8.615850e-47
Msa0025340	Msa0970090	0.810336	1.212604e-50	-8.615850e-47
Msa0025830	Msa0970090	0.818381	2.018998e-52	-8.615850e-47
Msa0033930	Msa0970090	0.805891	1.072248e-49	-8.615850e-47
Msa0034320	Msa0970090	0.801303	9.595635e-49	-8.615850e-47
Msa0044380	Msa0970090	0.816040	6.787639e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970090	MtrunA17_Chr6g0448911	91.776	304	12	4	1	294	1	301	0.0	544
Msa0970090	MtrunA17_Chr8g0355941	43.750	192	108	0	103	294	127	318	2.80e-57	186

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0970090	AT5G08400.2	74.615	260	65	1	36	294	41	300	1.23e-152	429
Msa0970090	AT5G08400.1	66.212	293	65	2	36	294	41	333	1.23e-145	412
Msa0970090	AT4G29400.1	42.784	194	111	0	101	294	109	302	2.30e-59	192

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Find 104 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGTGTATCAAAATAT+AGG	0.400733	6_4:-1567841	Msa0970090:three_prime_UTR
AAACAAACCATCTCATCCAA+GGG	0.641221	6_4:+1568043	None:intergenic
AAATTAGTTTGATGCTTTGG+TGG	0.470940	6_4:-1567805	Msa0970090:three_prime_UTR
AACACAGAACGAGTAGTAGA+AGG	0.460648	6_4:+1571749	None:intergenic
AACCAGATATATGAATCAAG+TGG	0.567513	6_4:+1571083	None:intergenic
AAGTACTTCAAGATATGAAC+AGG	0.410954	6_4:-1568155	Msa0970090:exon
AAGTACTTGTAACCATACTC+AGG	0.526116	6_4:+1568170	None:intergenic
AATACTTACTTAGCCCAAGC+AGG	0.499987	6_4:+1571569	None:intergenic
ACCGAGGATGATGACTGTGG+GGG	0.704905	6_4:+1571785	None:intergenic
ACGGTACGAGAAATCCTATC+GGG	0.579360	6_4:+1567988	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTATCCAAACAAAAATGAGG+AGG	-	chr6_4:1567909-1567928	Msa0970090:three_prime_UTR	30.0%
TAAATCCAAATCCAACTTGA+AGG	-	chr6_4:1568071-1568090	Msa0970090:three_prime_UTR	30.0%
ATCATCATTATCCTTCAAGT+TGG	+	chr6_4:1568085-1568104	None:intergenic	30.0%
GATAAATCGATAAAAGGATC+AGG	-	chr6_4:1568111-1568130	Msa0970090:three_prime_UTR	30.0%
GGAAGATAGAATTCGAAAAA+AGG	-	chr6_4:1568498-1568517	Msa0970090:intron	30.0%
ATCCACTTGATTCATATATC+TGG	-	chr6_4:1568697-1568716	Msa0970090:intron	30.0%
AACCAGATATATGAATCAAG+TGG	+	chr6_4:1568702-1568721	None:intergenic	30.0%
TTATACAGGTTATTCAAGCA+TGG	-	chr6_4:1568851-1568870	Msa0970090:intron	30.0%
AAGCATGTAATGAATGAATG+GGG	+	chr6_4:1568929-1568948	None:intergenic	30.0%
GTAAGCATGTAATGAATGAA+TGG	+	chr6_4:1568931-1568950	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	1567644	1572160	1567644	ID=Msa0970090;Name=Msa0970090
chr6_4	mRNA	1567644	1572160	1567644	ID=Msa0970090-mRNA-1;Parent=Msa0970090;Name=Msa0970090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=76\|1\|1\|1\|0.87\|0.77\|9\|516\|294
chr6_4	exon	1567644	1568262	1567644	ID=Msa0970090-mRNA-1:exon:802;Parent=Msa0970090-mRNA-1
chr6_4	exon	1568392	1568463	1568392	ID=Msa0970090-mRNA-1:exon:801;Parent=Msa0970090-mRNA-1
chr6_4	exon	1569630	1569751	1569630	ID=Msa0970090-mRNA-1:exon:800;Parent=Msa0970090-mRNA-1
chr6_4	exon	1570886	1570945	1570886	ID=Msa0970090-mRNA-1:exon:799;Parent=Msa0970090-mRNA-1
chr6_4	exon	1571034	1571112	1571034	ID=Msa0970090-mRNA-1:exon:798;Parent=Msa0970090-mRNA-1
chr6_4	exon	1571223	1571308	1571223	ID=Msa0970090-mRNA-1:exon:797;Parent=Msa0970090-mRNA-1
chr6_4	exon	1571396	1571483	1571396	ID=Msa0970090-mRNA-1:exon:796;Parent=Msa0970090-mRNA-1
chr6_4	exon	1571578	1571905	1571578	ID=Msa0970090-mRNA-1:exon:795;Parent=Msa0970090-mRNA-1
chr6_4	exon	1572138	1572160	1572138	ID=Msa0970090-mRNA-1:exon:794;Parent=Msa0970090-mRNA-1
chr6_4	five_prime_UTR	1572138	1572160	1572138	ID=Msa0970090-mRNA-1:five_prime_utr;Parent=Msa0970090-mRNA-1
chr6_4	five_prime_UTR	1571853	1571905	1571853	ID=Msa0970090-mRNA-1:five_prime_utr;Parent=Msa0970090-mRNA-1
chr6_4	CDS	1571578	1571852	1571578	ID=Msa0970090-mRNA-1:cds;Parent=Msa0970090-mRNA-1
chr6_4	CDS	1571396	1571483	1571396	ID=Msa0970090-mRNA-1:cds;Parent=Msa0970090-mRNA-1
chr6_4	CDS	1571223	1571308	1571223	ID=Msa0970090-mRNA-1:cds;Parent=Msa0970090-mRNA-1
chr6_4	CDS	1571034	1571112	1571034	ID=Msa0970090-mRNA-1:cds;Parent=Msa0970090-mRNA-1
chr6_4	CDS	1570886	1570945	1570886	ID=Msa0970090-mRNA-1:cds;Parent=Msa0970090-mRNA-1
chr6_4	CDS	1569630	1569751	1569630	ID=Msa0970090-mRNA-1:cds;Parent=Msa0970090-mRNA-1
chr6_4	CDS	1568392	1568463	1568392	ID=Msa0970090-mRNA-1:cds;Parent=Msa0970090-mRNA-1
chr6_4	CDS	1568160	1568262	1568160	ID=Msa0970090-mRNA-1:cds;Parent=Msa0970090-mRNA-1
chr6_4	three_prime_UTR	1567644	1568159	1567644	ID=Msa0970090-mRNA-1:three_prime_utr;Parent=Msa0970090-mRNA-1

Gene Sequence

>Msa0970090

ATGAGTAGCATGGCGTGTGGATGTTGGTACTACAACTACTGCTGTCCCCCACAGTCATCATCCTCGGTGCTGAAGCGTAGTCCTTCTACTACTCGTTCTGTGTTTGTTTGTTGTGTCTCTAAATCCAAATCCAACTTGAAGGATAATGATGATGAAATTGATAAATCGATAAAAGGATCAGGAACCACTGCTAGAGGTCGAAGATTACTAAGAATTCGACAAGATAAACAACAACGCGAACACGAACGCCTTCACAATTACCCTGCTTGGGCTAAAGTCCTTGAAGATGCTTGTAAAAACGACACTGAACTACGTGCTGTACTTGGTGATAGTATTGGCAACCCTCAACTCATGAAGGAACGAGTGGAAGATAGAATTCGAAAAAAGGGTAAAGACTTTCGTCGCTCCAAAACTGGATCTGTTGTTGCCTCCAAAGTCACCTTTAGAGACTTCAATCCACTTGATTCATATATCTGGTTTGAATTGTATGGATCACCATCTGATCGCGACGTTAATCTAATTGGCAGTGTTATTCAAGCATGGTATGTCATGGGTCGACTTGGGGCCTACAATTCTTCAAACTTGCAGATGTCAAATTCGTCAATGGAGTATGATCCTCTCTATGACTCAGATAAGGGTTTCAAAGTGATGCCGTCATCTTTCCATGATATCAGTGATGTTGAGTTCCAGGATAATTGGGGGCGTGTTTGGGTGGACCTCGGTACTGCTGATTATTTTGCCATTGATGTGCTTCTCAACTGCCTTACTAATTTAAGCTCAGAATATCTTGGTATCCAACAAATTGTTTTTGGTGGTCGGTCCATGGGTGATTGGGAAGAGGGGATGACAAACCCTGAGTATGGTTACAAGTACTTCAAGATATGA

Protein sequence

>Msa0970090

MSSMACGCWYYNYCCPPQSSSSVLKRSPSTTRSVFVCCVSKSKSNLKDNDDEIDKSIKGSGTTARGRRLLRIRQDKQQREHERLHNYPAWAKVLEDACKNDTELRAVLGDSIGNPQLMKERVEDRIRKKGKDFRRSKTGSVVASKVTFRDFNPLDSYIWFELYGSPSDRDVNLIGSVIQAWYVMGRLGAYNSSNLQMSNSSMEYDPLYDSDKGFKVMPSSFHDISDVEFQDNWGRVWVDLGTADYFAIDVLLNCLTNLSSEYLGIQQIVFGGRSMGDWEEGMTNPEYGYKYFKI*