AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382920 MtrunA17_Chr3g0138281 97.895 380 7 1 1 380 1 379 0.0 763
Msa0382920 MtrunA17_Chr4g0065141 58.497 306 123 3 76 378 79 383 1.53e-126 370
Msa0382920 MtrunA17_Chr5g0407161 54.575 306 133 4 74 378 77 377 7.11e-112 333
Msa0382920 MtrunA17_Chr3g0144111 54.577 284 104 4 95 378 1 259 3.63e-99 296
Msa0382920 MtrunA17_Chr1g0194191 45.402 348 160 8 49 378 50 385 4.40e-89 275
Msa0382920 MtrunA17_Chr2g0293811 43.491 338 174 7 55 379 34 367 7.29e-85 263
Msa0382920 MtrunA17_Chr1g0150451 36.162 271 147 8 80 346 75 323 2.35e-40 146
Msa0382920 MtrunA17_Chr1g0171571 35.106 282 148 9 77 344 382 642 4.80e-40 151
Msa0382920 MtrunA17_Chr1g0150071 29.714 350 177 8 61 357 5 338 1.10e-39 145
Msa0382920 MtrunA17_Chr3g0136811 30.114 352 173 9 61 357 5 338 1.79e-39 144
Msa0382920 MtrunA17_Chr5g0430481 35.926 270 138 7 90 348 131 376 1.46e-38 142
Msa0382920 MtrunA17_Chr3g0136711 35.055 271 150 8 80 346 32 280 2.45e-38 140
Msa0382920 MtrunA17_Chr4g0001761 30.530 321 156 7 81 347 22 329 2.78e-38 141
Msa0382920 MtrunA17_Chr3g0105371 36.090 266 141 7 90 347 95 339 7.75e-38 139
Msa0382920 MtrunA17_Chr6g0483411 31.373 306 174 8 66 348 28 320 2.72e-37 137
Msa0382920 MtrunA17_Chr4g0068971 45.679 162 76 4 224 378 110 266 3.52e-37 136
Msa0382920 MtrunA17_Chr3g0105351 35.688 269 140 8 90 348 71 316 3.85e-37 137
Msa0382920 MtrunA17_Chr1g0212961 35.227 264 143 8 90 350 103 341 1.15e-36 137
Msa0382920 MtrunA17_Chr3g0115851 35.983 239 134 5 114 347 58 282 3.85e-36 133
Msa0382920 MtrunA17_Chr5g0426141 35.271 258 139 8 95 347 48 282 2.99e-35 131
Msa0382920 MtrunA17_Chr3g0126511 32.867 286 165 8 69 350 82 344 5.17e-35 132
Msa0382920 MtrunA17_Chr2g0279151 36.638 232 128 6 121 347 64 281 2.09e-34 129
Msa0382920 MtrunA17_Chr4g0050381 34.914 232 132 5 121 347 60 277 3.77e-32 122
Msa0382920 MtrunA17_Chr2g0317021 34.167 240 139 6 113 347 108 333 4.17e-31 121
Msa0382920 MtrunA17_Chr2g0299981 29.467 319 160 9 89 349 227 538 1.02e-29 120
Msa0382920 MtrunA17_Chr3g0127091 27.152 302 171 7 79 343 57 346 1.42e-28 115
Msa0382920 MtrunA17_Chr1g0150781 29.870 308 160 10 90 349 247 546 1.65e-28 117
Msa0382920 MtrunA17_Chr8g0360351 33.195 241 140 7 113 347 57 282 7.02e-28 111
Msa0382920 MtrunA17_Chr4g0070871 29.836 305 159 9 84 344 208 501 1.13e-27 114
Msa0382920 MtrunA17_Chr3g0112291 32.184 261 135 7 119 344 120 373 2.67e-27 112
Msa0382920 MtrunA17_Chr4g0051661 33.824 272 147 10 83 346 151 397 1.14e-26 110
Msa0382920 MtrunA17_Chr3g0135961 29.710 276 151 7 110 349 274 542 2.63e-26 110
Msa0382920 MtrunA17_Chr1g0158781 33.333 285 151 9 81 344 111 377 3.47e-26 108
Msa0382920 MtrunA17_Chr5g0396731 33.981 206 118 4 122 316 107 305 2.90e-25 105
Msa0382920 MtrunA17_Chr8g0389921 28.617 311 174 8 84 363 150 443 8.42e-25 105
Msa0382920 MtrunA17_Chr5g0435721 34.112 214 112 6 122 316 223 426 2.60e-24 104
Msa0382920 MtrunA17_Chr7g0263281 27.778 288 147 12 118 349 66 348 3.05e-18 85.5
Msa0382920 MtrunA17_Chr2g0295401 28.938 273 139 13 124 350 94 357 3.95e-18 85.1
Msa0382920 MtrunA17_Chr3g0089721 29.694 229 117 6 122 311 68 291 1.09e-17 84.0
Msa0382920 MtrunA17_Chr4g0067711 26.452 310 171 12 92 350 53 356 1.29e-17 83.6
Msa0382920 MtrunA17_Chr4g0066371 29.434 265 133 11 122 344 86 338 1.43e-17 84.0
Msa0382920 MtrunA17_Chr1g0211251 27.915 283 143 12 118 344 76 353 1.86e-17 83.6
Msa0382920 MtrunA17_Chr3g0089711 29.004 231 120 6 120 311 66 291 2.79e-17 82.8
Msa0382920 MtrunA17_Chr8g0371321 26.333 300 156 13 118 361 74 364 8.67e-17 81.6
Msa0382920 MtrunA17_Chr1g0151781 30.045 223 109 8 121 303 67 282 8.92e-17 80.9
Msa0382920 MtrunA17_Chr7g0256751 27.490 251 141 8 122 337 69 313 9.13e-17 81.6
Msa0382920 MtrunA17_Chr7g0250061 26.351 296 154 12 121 361 75 361 1.07e-16 81.3
Msa0382920 MtrunA17_Chr1g0213351 26.481 287 149 12 121 351 79 359 1.88e-16 80.5
Msa0382920 MtrunA17_Chr1g0192421 28.400 250 129 10 122 331 89 328 1.20e-15 77.8
Msa0382920 MtrunA17_Chr1g0181901 28.395 243 121 11 118 319 71 301 5.11e-15 76.3
Msa0382920 MtrunA17_Chr5g0394181 28.279 244 150 9 121 346 361 597 1.06e-14 75.9
Msa0382920 MtrunA17_Chr2g0294291 28.627 255 141 10 114 332 66 315 1.26e-14 74.7
Msa0382920 MtrunA17_Chr7g0272061 28.195 266 127 11 122 334 91 345 5.12e-14 73.2
Msa0382920 MtrunA17_Chr7g0256771 29.258 229 116 7 122 310 70 292 7.97e-14 72.0
Msa0382920 MtrunA17_Chr7g0249421 35.417 144 69 4 183 308 206 343 8.51e-14 72.8
Msa0382920 MtrunA17_Chr7g0243571 27.208 283 146 10 122 350 92 368 3.02e-13 71.2
Msa0382920 MtrunA17_Chr7g0238501 26.222 225 127 7 121 306 262 486 4.11e-13 70.9
Msa0382920 MtrunA17_Chr7g0221691 35.417 144 69 5 183 308 231 368 1.48e-12 68.9
Msa0382920 MtrunA17_Chr1g0209451 29.278 263 137 13 121 357 67 306 3.44e-12 67.8
Msa0382920 MtrunA17_Chr7g0225501 30.698 215 108 12 117 303 79 280 5.15e-11 64.3
Msa0382920 MtrunA17_Chr4g0004971 26.991 226 113 8 120 300 76 294 5.84e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382920 AT2G25620.1 66.076 395 118 7 1 382 1 392 0.0 509
Msa0382920 AT2G25620.2 66.076 395 118 7 1 382 1 392 0.0 509
Msa0382920 AT2G33700.1 55.556 306 131 4 74 378 76 377 5.95e-114 338
Msa0382920 AT3G51470.2 52.581 310 138 3 71 380 17 317 2.32e-109 324
Msa0382920 AT3G51470.1 52.581 310 138 3 71 380 61 361 3.24e-109 325
Msa0382920 AT3G62260.1 48.734 316 145 6 76 378 71 382 1.58e-89 276
Msa0382920 AT3G62260.2 48.734 316 145 6 76 378 72 383 1.90e-89 276
Msa0382920 AT1G48040.1 46.006 313 156 5 75 377 71 380 6.93e-83 259
Msa0382920 AT3G62260.3 48.485 297 136 6 95 378 1 293 1.06e-81 253
Msa0382920 AT3G17250.1 42.902 317 163 6 75 378 110 421 2.51e-74 238
Msa0382920 AT5G24940.1 36.531 271 146 8 80 346 31 279 8.14e-42 153
Msa0382920 AT5G10740.1 37.269 271 144 8 80 346 31 279 9.66e-42 150
Msa0382920 AT5G10740.2 37.269 271 144 8 80 346 31 279 9.66e-42 150
Msa0382920 AT4G31750.2 36.531 271 146 8 80 346 31 279 9.43e-40 144
Msa0382920 AT4G31750.1 36.531 271 146 8 80 346 31 279 1.02e-39 144
Msa0382920 AT4G31750.3 36.531 271 146 8 80 346 31 279 1.02e-39 144
Msa0382920 AT2G25070.1 28.895 353 179 9 61 358 5 340 1.37e-39 145
Msa0382920 AT2G25070.2 28.895 353 179 9 61 358 5 340 1.37e-39 145
Msa0382920 AT5G53140.1 33.456 272 155 7 81 348 100 349 2.32e-39 146
Msa0382920 AT5G53140.2 33.456 272 155 7 81 348 100 349 2.32e-39 146
Msa0382920 AT4G31860.1 29.969 327 161 7 80 351 21 334 1.52e-38 142
Msa0382920 AT1G78200.5 35.498 231 133 3 122 347 19 238 1.88e-37 136
Msa0382920 AT1G78200.4 35.498 231 133 3 122 347 19 238 1.88e-37 136
Msa0382920 AT2G20630.1 33.721 258 143 6 95 347 45 279 3.11e-37 137
Msa0382920 AT2G20630.2 33.463 257 143 6 95 346 45 278 6.19e-37 136
Msa0382920 AT1G78200.1 35.345 232 134 3 121 347 63 283 7.15e-37 136
Msa0382920 AT1G78200.3 35.345 232 134 3 121 347 63 283 7.15e-37 136
Msa0382920 AT1G78200.2 35.345 232 134 3 121 347 63 283 7.15e-37 136
Msa0382920 AT2G30020.1 36.431 269 140 9 90 348 147 394 7.96e-37 139
Msa0382920 AT4G28400.3 34.496 258 141 6 95 347 27 261 1.73e-36 134
Msa0382920 AT4G28400.1 34.496 258 141 6 95 347 49 283 3.64e-36 134
Msa0382920 AT2G40860.4 32.746 284 155 9 75 344 287 548 1.08e-35 138
Msa0382920 AT4G31860.3 31.690 284 131 6 80 313 21 291 1.29e-35 133
Msa0382920 AT2G40860.1 33.217 286 151 10 75 344 385 646 1.47e-35 139
Msa0382920 AT1G43900.1 34.066 273 151 9 80 347 121 369 1.64e-35 134
Msa0382920 AT1G18030.1 31.944 288 152 9 88 348 80 350 6.74e-35 132
Msa0382920 AT1G07160.1 35.338 266 140 8 90 344 130 374 9.69e-35 132
Msa0382920 AT1G22280.1 35.271 258 139 9 95 347 47 281 1.50e-33 127
Msa0382920 AT3G15260.2 34.855 241 136 6 113 347 64 289 1.69e-33 127
Msa0382920 AT3G15260.1 34.855 241 136 6 113 347 64 289 1.69e-33 127
Msa0382920 AT1G34750.2 34.468 235 134 6 116 344 59 279 1.19e-32 124
Msa0382920 AT1G34750.1 34.468 235 134 6 116 344 59 279 1.19e-32 124
Msa0382920 AT1G34750.3 34.468 235 134 6 116 344 59 279 1.19e-32 124
Msa0382920 AT1G67820.2 38.342 193 100 4 121 306 114 294 3.47e-32 126
Msa0382920 AT2G40180.1 34.182 275 148 8 90 351 136 390 4.66e-32 125
Msa0382920 AT1G67820.1 38.342 193 100 4 121 306 150 330 5.21e-32 126
Msa0382920 AT4G31860.2 30.970 268 122 6 80 297 21 275 3.97e-31 120
Msa0382920 AT1G22280.3 34.470 264 139 10 95 347 47 287 5.11e-31 120
Msa0382920 AT2G40860.2 31.884 276 148 10 75 334 385 636 9.47e-31 124
Msa0382920 AT2G29380.1 30.286 350 174 14 33 344 41 358 1.65e-28 115
Msa0382920 AT1G07430.1 31.890 254 144 8 74 310 114 355 2.77e-28 115
Msa0382920 AT4G26080.1 30.201 298 152 10 90 344 136 420 7.73e-28 114
Msa0382920 AT2G34740.1 31.801 261 146 9 95 348 101 336 1.06e-27 112
Msa0382920 AT5G51760.2 30.392 306 152 10 89 344 85 379 1.64e-27 112
Msa0382920 AT5G51760.1 30.392 306 152 10 89 344 115 409 2.77e-27 112
Msa0382920 AT5G59220.1 35.000 240 122 8 90 310 119 343 4.72e-27 112
Msa0382920 AT1G18030.2 31.933 238 119 8 88 299 80 300 6.58e-27 109
Msa0382920 AT4G27800.1 27.019 322 178 8 81 361 58 363 4.00e-26 108
Msa0382920 AT1G72770.4 29.841 315 159 9 90 349 197 504 4.26e-26 110
Msa0382920 AT1G72770.1 29.841 315 159 9 90 349 197 504 4.26e-26 110
Msa0382920 AT1G72770.3 29.841 315 159 9 90 349 197 504 4.26e-26 110
Msa0382920 AT1G17550.1 28.840 319 158 8 90 349 196 504 5.15e-26 110
Msa0382920 AT1G17550.2 28.840 319 158 8 90 349 196 504 5.15e-26 110
Msa0382920 AT5G57050.2 29.373 303 153 11 90 344 80 369 6.00e-26 108
Msa0382920 AT3G11410.1 32.946 258 132 9 78 310 102 343 6.28e-26 108
Msa0382920 AT5G57050.1 29.470 302 154 11 90 344 120 409 8.40e-26 108
Msa0382920 AT4G28400.2 34.286 210 114 5 95 299 49 239 8.50e-26 105
Msa0382920 AT1G34750.4 33.158 190 111 5 116 299 59 238 4.16e-22 95.1
Msa0382920 AT2G40860.3 31.897 232 121 9 75 290 385 595 1.70e-21 97.1
Msa0382920 AT4G08260.1 30.859 256 129 10 95 348 1 210 2.93e-21 91.7
Msa0382920 AT2G34740.2 32.075 212 116 8 95 299 115 305 3.03e-21 94.4
Msa0382920 AT2G34740.3 32.075 212 116 8 95 299 97 287 3.41e-21 93.6
Msa0382920 AT4G27800.2 26.712 292 157 8 81 331 58 333 3.55e-20 91.3
Msa0382920 AT4G27800.3 27.465 284 148 9 81 322 58 325 9.04e-20 90.1
Msa0382920 AT5G02760.1 31.780 236 113 11 121 319 71 295 2.11e-19 89.4
Msa0382920 AT5G59220.2 37.097 186 90 7 90 256 119 296 8.47e-19 86.7
Msa0382920 AT3G12620.2 28.975 283 140 13 118 344 78 355 5.08e-18 85.5
Msa0382920 AT3G12620.1 28.975 283 140 13 118 344 78 355 5.08e-18 85.5
Msa0382920 AT2G20050.2 28.625 269 130 9 122 344 143 395 3.95e-17 84.3
Msa0382920 AT2G20050.1 28.625 269 130 9 122 344 143 395 3.99e-17 84.3
Msa0382920 AT1G47380.1 28.188 298 167 11 117 386 57 335 8.74e-17 82.0
Msa0382920 AT3G63340.8 29.496 278 122 12 149 366 198 461 1.07e-16 82.8
Msa0382920 AT3G63340.7 29.496 278 122 12 149 366 198 461 1.21e-16 82.8
Msa0382920 AT3G63340.11 29.496 278 122 12 149 366 198 461 1.27e-16 82.8
Msa0382920 AT3G63340.5 29.496 278 122 12 149 366 198 461 1.28e-16 82.8
Msa0382920 AT3G63340.1 29.496 278 122 12 149 366 198 461 1.28e-16 82.8
Msa0382920 AT3G63340.6 29.496 278 122 12 149 366 198 461 1.42e-16 82.4
Msa0382920 AT3G63340.3 29.496 278 122 12 149 366 198 461 1.42e-16 82.4
Msa0382920 AT3G63340.10 29.496 278 122 12 149 366 198 461 1.42e-16 82.4
Msa0382920 AT3G63340.4 29.496 278 122 12 149 366 198 461 1.42e-16 82.4
Msa0382920 AT3G63340.12 29.496 278 122 12 149 366 198 461 1.63e-16 81.6
Msa0382920 AT4G33920.1 26.027 292 156 12 114 348 52 340 2.89e-16 80.1
Msa0382920 AT5G01700.1 28.315 279 143 11 120 352 27 294 3.26e-16 79.7
Msa0382920 AT3G16800.4 37.415 147 67 5 183 310 74 214 1.02e-15 77.0
Msa0382920 AT3G16800.6 37.415 147 67 5 183 310 74 214 1.02e-15 77.0
Msa0382920 AT3G55050.1 27.273 286 147 13 118 347 79 359 1.03e-15 78.6
Msa0382920 AT3G55050.2 27.273 286 147 13 118 347 79 359 1.03e-15 78.6
Msa0382920 AT5G01700.2 28.315 279 143 11 120 352 76 343 1.32e-15 78.2
Msa0382920 AT3G16800.2 31.556 225 112 9 121 310 92 309 1.36e-15 78.2
Msa0382920 AT3G16800.1 31.556 225 112 9 121 310 92 309 1.36e-15 78.2
Msa0382920 AT3G16800.3 31.556 225 112 9 121 310 92 309 1.36e-15 78.2
Msa0382920 AT3G51370.1 25.175 286 153 11 115 344 71 351 2.65e-15 77.4
Msa0382920 AT3G51370.3 25.175 286 153 11 115 344 71 351 2.65e-15 77.4
Msa0382920 AT3G05640.2 26.421 299 155 12 81 332 48 328 3.17e-15 77.0
Msa0382920 AT3G05640.1 26.421 299 155 12 81 332 48 328 3.17e-15 77.0
Msa0382920 AT3G05640.3 26.421 299 155 12 81 332 48 328 3.17e-15 77.0
Msa0382920 AT3G17090.1 29.032 248 131 9 121 331 83 322 4.16e-15 77.0
Msa0382920 AT3G17090.2 28.926 242 127 9 121 325 83 316 5.77e-15 75.9
Msa0382920 AT4G32950.1 28.641 206 118 6 121 303 71 270 1.18e-14 75.1
Msa0382920 AT3G63320.2 28.571 273 119 12 151 357 52 314 1.28e-14 75.1
Msa0382920 AT1G09160.2 30.315 254 132 11 117 344 61 295 1.76e-14 75.1
Msa0382920 AT1G09160.1 30.315 254 132 11 117 344 61 295 1.76e-14 75.1
Msa0382920 AT3G63320.1 26.857 350 142 15 110 357 60 397 3.69e-14 74.3
Msa0382920 AT5G57050.3 30.256 195 104 8 90 258 120 308 3.75e-14 73.2
Msa0382920 AT5G27930.1 26.804 291 136 14 107 342 82 350 4.46e-14 73.6
Msa0382920 AT5G27930.2 26.804 291 136 14 107 342 82 350 4.46e-14 73.6
Msa0382920 AT1G72770.2 31.220 205 103 6 90 256 197 401 5.82e-14 73.6
Msa0382920 AT1G72770.5 31.220 205 103 6 90 256 197 401 5.82e-14 73.6
Msa0382920 AT1G22280.2 35.616 146 82 5 95 240 47 180 1.10e-13 70.1
Msa0382920 AT5G66080.1 26.855 283 146 11 118 344 77 354 1.73e-13 72.0
Msa0382920 AT5G26010.1 26.493 268 148 10 124 353 75 331 4.56e-13 70.1
Msa0382920 AT1G79630.6 32.275 189 91 8 183 346 111 287 7.31e-13 70.1
Msa0382920 AT1G79630.3 32.275 189 91 8 183 346 111 287 7.31e-13 70.1
Msa0382920 AT1G79630.4 32.275 189 91 8 183 346 111 287 7.31e-13 70.1
Msa0382920 AT1G79630.5 32.275 189 91 8 183 346 111 287 7.31e-13 70.1
Msa0382920 AT3G63340.2 33.918 171 84 8 212 366 337 494 7.94e-13 70.9
Msa0382920 AT1G79630.2 32.275 189 91 8 183 346 151 327 1.06e-12 69.7
Msa0382920 AT1G79630.7 32.275 189 91 8 183 346 151 327 1.06e-12 69.7
Msa0382920 AT1G79630.8 32.275 189 91 8 183 346 217 393 1.84e-12 69.3
Msa0382920 AT5G06750.3 25.357 280 152 10 120 344 80 357 1.88e-12 68.9
Msa0382920 AT5G06750.1 25.357 280 152 10 120 344 80 357 1.88e-12 68.9
Msa0382920 AT1G79630.1 32.275 189 91 8 183 346 221 397 1.94e-12 69.3
Msa0382920 AT1G16220.1 29.515 227 119 10 148 346 161 374 2.45e-12 68.9
Msa0382920 AT5G19280.1 27.419 248 147 10 123 346 339 577 4.28e-12 68.2
Msa0382920 AT3G02750.2 34.507 142 69 5 183 306 215 350 9.18e-12 67.0
Msa0382920 AT3G02750.1 34.507 142 69 5 183 306 215 350 9.18e-12 67.0
Msa0382920 AT4G32950.2 28.141 199 114 6 121 296 71 263 1.56e-11 65.1
Msa0382920 AT3G16560.3 29.054 148 83 4 181 306 273 420 4.77e-11 64.7
Msa0382920 AT3G16560.1 29.054 148 83 4 181 306 273 420 4.94e-11 64.7
Msa0382920 AT3G16560.4 29.054 148 83 4 181 306 273 420 4.94e-11 64.7
Msa0382920 AT3G16560.2 29.054 148 83 4 181 306 273 420 4.94e-11 64.7

Find 127 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGTTACCAAAATTCGAAAA+TGG 0.203487 3_1:+85706714 None:intergenic
GCAGCAGCCTCCACCAAATT+TGG 0.216972 3_1:-85704426 Msa0382920:CDS
GTCGGTGGTCGGTGAGGGTT+TGG 0.228941 3_1:+85706915 None:intergenic
TGAGTTTGCGCAAGTATTTA+TGG 0.229399 3_1:-85704321 Msa0382920:CDS
GCGCAAAATCTACAGCATTT+TGG 0.230172 3_1:+85704561 None:intergenic
TCATAGGCTGCGATGGGATT+TGG 0.232647 3_1:-85704598 Msa0382920:CDS
GCATTGGCTACTCTTGTTAT+AGG 0.258949 3_1:-85705165 Msa0382920:CDS
CTTAATGTTGCTCGAGCTAT+TGG 0.303340 3_1:-85704722 Msa0382920:CDS
CATAGGCTGCGATGGGATTT+GGG 0.327999 3_1:-85704597 Msa0382920:CDS
GATGGACCGAGTGCTTTCTA+TGG 0.328546 3_1:-85705769 Msa0382920:CDS
TATCGGGTTCCGGTCAAATA+TGG 0.330817 3_1:-85705854 Msa0382920:CDS
AGTTTCTGACTGTAGGTTGC+TGG 0.335395 3_1:-85704897 Msa0382920:intron
TCCGGAGGATGTGCTGATAT+CGG 0.336894 3_1:-85705871 Msa0382920:CDS
GAGCGTGGTGCTACCAAATT+TGG 0.350164 3_1:+85704413 None:intergenic
CTCAATAAACAACTTATAGA+TGG 0.363410 3_1:-85705787 Msa0382920:CDS
GCAATGGATGGATTAGGATT+TGG 0.372864 3_1:+85706588 None:intergenic
GTCTATGATGGATATCTTAA+CGG 0.377116 3_1:-85704749 Msa0382920:CDS
CAGAGGCGTATCGAGGCATC+TGG 0.390804 3_1:-85704779 Msa0382920:CDS
TGTTACTTGTTAGGTGTAGT+AGG 0.391570 3_1:-85704203 Msa0382920:three_prime_UTR
CATCCTCCGGAACGGAGCTT+TGG 0.398949 3_1:+85705883 None:intergenic
TCGGTGGTCGGTGAGGGTTT+GGG 0.400048 3_1:+85706916 None:intergenic
CTTTCATGCAACCTGGTTTG+TGG 0.400398 3_1:+85704804 None:intergenic
TTCCTTCCAAAGCTCCGTTC+CGG 0.404057 3_1:-85705889 Msa0382920:CDS
GCAGAAGCAATGGATGGATT+AGG 0.405446 3_1:+85706582 None:intergenic
CTCTGCTCTTTCATGCAACC+TGG 0.407237 3_1:+85704797 None:intergenic
AACTGTAGGTGTTACTTGTT+AGG 0.413137 3_1:-85704212 Msa0382920:intron
AAAAGAGTGTGTTGGGAAAG+AGG 0.414423 3_1:+85706863 None:intergenic
ATGTGGAGATTTGTTTGAAA+GGG 0.417255 3_1:+85706833 None:intergenic
TGAATCTCAATTCTCATAAG+AGG 0.424835 3_1:+85704269 None:intergenic
CGGTGGTCGGTGGTCGGTGA+GGG 0.425084 3_1:+85706910 None:intergenic
AGTTACCAAAATTCGAAAAT+GGG 0.428227 3_1:+85706715 None:intergenic
TTTATATGTCGGCGATTCGA+AGG 0.437263 3_1:+85706798 None:intergenic
TGACTGTAGGTTGCTGGTGG+TGG 0.438915 3_1:-85704891 Msa0382920:intron
TGGCTTGGTCAGGTGTTTGA+TGG 0.441121 3_1:-85705363 Msa0382920:intron
CCGGAGGATGTGCTGATATC+GGG 0.442854 3_1:-85705870 Msa0382920:CDS
AGAGGCGTATCGAGGCATCT+GGG 0.450237 3_1:-85704778 Msa0382920:CDS
CTCAATGCTGCCCTTGCATC+CGG 0.452615 3_1:-85705195 Msa0382920:CDS
TTGCTGGTGGTGGCAAATGC+TGG 0.454788 3_1:-85704881 Msa0382920:CDS
ATGCAGTGGTGCCGGATGCA+AGG 0.459353 3_1:+85705184 None:intergenic
GCAAACAGACTATGCATTTG+CGG 0.463349 3_1:-85705229 Msa0382920:CDS
TTTGAAGAAAAGAGTGTGTT+GGG 0.473612 3_1:+85706856 None:intergenic
AATGTGGAGATTTGTTTGAA+AGG 0.474500 3_1:+85706832 None:intergenic
TGCATCCGGCACCACTGCAT+TGG 0.476188 3_1:-85705181 Msa0382920:CDS
TCTATGATGGATATCTTAAC+GGG 0.479521 3_1:-85704748 Msa0382920:CDS
TGCAGTGGTGCCGGATGCAA+GGG 0.482277 3_1:+85705185 None:intergenic
AGCTGTATGCAGTAAGGATC+TGG 0.483557 3_1:-85704510 Msa0382920:CDS
GATGTGCTGATATCGGGTTC+CGG 0.494574 3_1:-85705864 Msa0382920:CDS
CCCGATATCAGCACATCCTC+CGG 0.497125 3_1:+85705870 None:intergenic
AGATCCTTACTGCATACAGC+TGG 0.500453 3_1:+85704512 None:intergenic
TAAGTTGTTTATTGAGCCCA+TGG 0.501821 3_1:+85705794 None:intergenic
TTATCCTCGAGAATGAACTT+TGG 0.503539 3_1:+85705297 None:intergenic
AGTAGCCAATGCAGTGGTGC+CGG 0.504279 3_1:+85705176 None:intergenic
ACTATCCTTTCAATATCCAC+TGG 0.504474 3_1:+85705267 None:intergenic
CACAGGAGCTTCTCTGCTGA+AGG 0.507072 3_1:-85704383 Msa0382920:CDS
AGGCGTATCGAGGCATCTGG+GGG 0.513077 3_1:-85704776 Msa0382920:CDS
ATGGACCGAGTGCTTTCTAT+GGG 0.513585 3_1:-85705768 Msa0382920:CDS
GCGGTGGTCGGTGGTCGGTG+AGG 0.520865 3_1:+85706909 None:intergenic
AGAATGACCGTCGTAAATGA+AGG 0.524484 3_1:+85706887 None:intergenic
ATGGATGGATTAGGATTTGG+AGG 0.527042 3_1:+85706591 None:intergenic
TTTCTCATCATAGGCTGCGA+TGG 0.528638 3_1:-85704605 Msa0382920:CDS
TATGTCGGCGATTCGAAGGG+TGG 0.528965 3_1:+85706802 None:intergenic
TTCTCATCATAGGCTGCGAT+GGG 0.530891 3_1:-85704604 Msa0382920:CDS
GAAGGAATGAAAGGCAAAGA+TGG 0.533012 3_1:-85704686 Msa0382920:CDS
TGAGATTCATTTGTAACTGT+AGG 0.533426 3_1:-85704255 Msa0382920:intron
TGCATAGTCTGTTTGCAGAA+AGG 0.536620 3_1:+85705236 None:intergenic
TTATATGTCGGCGATTCGAA+GGG 0.537707 3_1:+85706799 None:intergenic
CGACCCAGCTGTATGCAGTA+AGG 0.541516 3_1:-85704516 Msa0382920:CDS
TAAATGAAGGCGGTGGTCGG+TGG 0.544330 3_1:+85706900 None:intergenic
GTTTGAAGAAAAGAGTGTGT+TGG 0.546377 3_1:+85706855 None:intergenic
TAAAATAAAATTAAACAAGA+AGG 0.548575 3_1:+85704296 None:intergenic
ATTTCCCAGTGGATATTGAA+AGG 0.550709 3_1:-85705272 Msa0382920:CDS
CTTCCAAAGCTCCGTTCCGG+AGG 0.555450 3_1:-85705886 Msa0382920:CDS
CGTGGTGCTACCAAATTTGG+TGG 0.556204 3_1:+85704416 None:intergenic
TGGCTACTCTTGTTATAGGA+AGG 0.559140 3_1:-85705161 Msa0382920:intron
GAGGCGTATCGAGGCATCTG+GGG 0.559861 3_1:-85704777 Msa0382920:CDS
CTATCCTTTCAATATCCACT+GGG 0.563023 3_1:+85705268 None:intergenic
ATGTCAAGAGACCACAAACC+AGG 0.567267 3_1:-85704815 Msa0382920:CDS
AGAGAAGCTCCTGTGCACTC+TGG 0.567952 3_1:+85704391 None:intergenic
TGGCACATGGAAGGAATGAA+AGG 0.568858 3_1:-85704695 Msa0382920:CDS
GGTCAGGTGTTTGATGGACA+CGG 0.571598 3_1:-85705357 Msa0382920:intron
TTTCTGCATGGTAAAACAAG+AGG 0.572653 3_1:+85706534 None:intergenic
ATTGGTGACTGGCACATGGA+AGG 0.574252 3_1:-85704704 Msa0382920:CDS
CTCCGGAACGGAGCTTTGGA+AGG 0.575225 3_1:+85705887 None:intergenic
TTCTGACTGTAGGTTGCTGG+TGG 0.579507 3_1:-85704894 Msa0382920:intron
CGAAAAGCAGAAGCAATGGA+TGG 0.580021 3_1:+85706576 None:intergenic
TCGTAAATGAAGGCGGTGGT+CGG 0.582325 3_1:+85706897 None:intergenic
TTGCTCGAGCTATTGGTGAC+TGG 0.582496 3_1:-85704715 Msa0382920:CDS
GAGGACGAATTTCTCATCAT+AGG 0.583587 3_1:-85704614 Msa0382920:CDS
CTCCTGTGCACTCTGGAGCG+TGG 0.585430 3_1:+85704398 None:intergenic
ACACATCCTCCATATTTGAC+CGG 0.585526 3_1:+85705845 None:intergenic
AGACAATTTAGCTGTTGTTG+TGG 0.586656 3_1:-85704459 Msa0382920:CDS
TTTGCCAAAGTTCATTCTCG+AGG 0.590449 3_1:-85705301 Msa0382920:CDS
CAGTAAGGATCTGGTTGATG+AGG 0.591652 3_1:-85704501 Msa0382920:CDS
TGAAGGCGGTGGTCGGTGGT+CGG 0.591726 3_1:+85706904 None:intergenic
GAAGGGTGGTTTAACAAATG+TGG 0.593767 3_1:+85706816 None:intergenic
TTGACGAAAAGCAGAAGCAA+TGG 0.595015 3_1:+85706572 None:intergenic
CGAGCAGTGCTGTGCCGTCG+TGG 0.598079 3_1:-85704851 Msa0382920:CDS
GGGTTTGGGTTTCGAAGATG+CGG 0.598198 3_1:+85706930 None:intergenic
AGCTATTGGTGACTGGCACA+TGG 0.600561 3_1:-85704708 Msa0382920:CDS
CACCACGCTCCAGAGTGCAC+AGG 0.602591 3_1:-85704400 Msa0382920:CDS
TTTGGGTTTCGAAGATGCGG+TGG 0.614214 3_1:+85706933 None:intergenic
GCTTTGGAAGGAAATCAGAC+TGG 0.619255 3_1:+85705899 None:intergenic
GGTGCTACCAAATTTGGTGG+AGG 0.621044 3_1:+85704419 None:intergenic
CGGGTTCCGGTCAAATATGG+AGG 0.621074 3_1:-85705851 Msa0382920:CDS
GGAATGAAAGGCAAAGATGG+TGG 0.624005 3_1:-85704683 Msa0382920:CDS
AGTTCAGGCTCTGCACTGAG+TGG 0.625933 3_1:+85704659 None:intergenic
GACTACAAAACTTACTGCCG+AGG 0.627191 3_1:-85704633 Msa0382920:CDS
TATGATGAGAAATTCGTCCT+CGG 0.637476 3_1:+85704616 None:intergenic
GATCCTTACTGCATACAGCT+GGG 0.642529 3_1:+85704513 None:intergenic
GGTGTGAATTGTTTCAGTGA+AGG 0.642841 3_1:-85706636 Msa0382920:CDS
ACCGTCGTAAATGAAGGCGG+TGG 0.644318 3_1:+85706893 None:intergenic
TATCAGCACATCCTCCGGAA+CGG 0.646071 3_1:+85705875 None:intergenic
GAAAGAGCAGAGGCGTATCG+AGG 0.646196 3_1:-85704786 Msa0382920:CDS
TCTGTTGAGGATGTTACTGA+AGG 0.648815 3_1:-85705925 Msa0382920:CDS
CTTTCTGACTGTATCATATG+CGG 0.655064 3_1:-85704169 Msa0382920:three_prime_UTR
TGAAAACAAATCATAAAACA+AGG 0.663165 3_1:-85706973 Msa0382920:five_prime_UTR
CAGGTTGCATGAAAGAGCAG+AGG 0.671998 3_1:-85704796 Msa0382920:CDS
TATACCCCATAGAAAGCACT+CGG 0.672295 3_1:+85705763 None:intergenic
AACAAGAGTAGCCAATGCAG+TGG 0.673761 3_1:+85705170 None:intergenic
GTTGTCTGATGCATCTGTTG+AGG 0.696072 3_1:-85705938 Msa0382920:CDS
GGCGTATCGAGGCATCTGGG+GGG 0.697326 3_1:-85704775 Msa0382920:CDS
ACCACCGCCTTCATTTACGA+CGG 0.704422 3_1:-85706894 Msa0382920:five_prime_UTR
GGTTTCTTACAAGAGAAGCG+TGG 0.710252 3_1:+85706499 None:intergenic
CGAGGATAAAGATTTCCCAG+TGG 0.737162 3_1:-85705283 Msa0382920:CDS
TGGACCGAGTGCTTTCTATG+GGG 0.737710 3_1:-85705767 Msa0382920:intron
ATGACCGTCGTAAATGAAGG+CGG 0.742021 3_1:+85706890 None:intergenic
CAGGTGTTTGATGGACACGG+CGG 0.806389 3_1:-85705354 Msa0382920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTGATATTCAATAATTT+GGG - chr3_1:85705980-85705999 Msa0382920:intron 10.0%
!! TAAAATAAAATTAAACAAGA+AGG + chr3_1:85706820-85706839 None:intergenic 10.0%
!! ATTTAATGTAGATAAAAACT+AGG - chr3_1:85704846-85704865 Msa0382920:CDS 15.0%
!!! GATTTTGATATTCAATAATT+TGG - chr3_1:85705979-85705998 Msa0382920:intron 15.0%
!! GCTAATTTATAGTAAAAAAA+AGG + chr3_1:85706013-85706032 None:intergenic 15.0%
!!! TTTATGATTTGTTTTCACAA+CGG + chr3_1:85704137-85704156 None:intergenic 20.0%
!! TGAAAACAAATCATAAAACA+AGG - chr3_1:85704140-85704159 Msa0382920:three_prime_UTR 20.0%
!!! ATTAGGTCTTTTTTATATGT+CGG + chr3_1:85704329-85704348 None:intergenic 20.0%
!!! TCAGAAAAAGTGTAAAAATT+AGG + chr3_1:85704346-85704365 None:intergenic 20.0%
!! CAAAAGAAAAAACAAAAGAT+CGG + chr3_1:85704638-85704657 None:intergenic 20.0%
!!! ATAATGATGTTACTTAGTTT+TGG - chr3_1:85704686-85704705 Msa0382920:CDS 20.0%
!! GAAATGAAATGAAATAATGA+TGG - chr3_1:85704902-85704921 Msa0382920:intron 20.0%
!!! TAATTGTTGATTATGTTTTG+TGG - chr3_1:85704984-85705003 Msa0382920:intron 20.0%
!! ATAATCAATAATCAATCCTA+AGG + chr3_1:85705023-85705042 None:intergenic 20.0%
!!! TAGGATTGATTATTGATTAT+TGG - chr3_1:85705023-85705042 Msa0382920:intron 20.0%
!! TGATATGATAGTTGTTAAAA+TGG - chr3_1:85705404-85705423 Msa0382920:intron 20.0%
!!! TGCTAATCTTATTTTGTAAT+TGG - chr3_1:85705562-85705581 Msa0382920:intron 20.0%
!!! TTTTTTTTTGAACAAACTGT+AGG - chr3_1:85706887-85706906 Msa0382920:five_prime_UTR 20.0%
!! TTTAACCCATTTTCGAATTT+TGG - chr3_1:85704393-85704412 Msa0382920:CDS 25.0%
! AGTTACCAAAATTCGAAAAT+GGG + chr3_1:85704401-85704420 None:intergenic 25.0%
!!! ATTTTCGAATTTTGGTAACT+GGG - chr3_1:85704401-85704420 Msa0382920:CDS 25.0%
!!! TTTTTGAAGTTTGGATCTTA+TGG - chr3_1:85704430-85704449 Msa0382920:CDS 25.0%
! GATCTTATGGTTAAGAAAAA+TGG - chr3_1:85704443-85704462 Msa0382920:CDS 25.0%
! AGAAAAATGGAAGAAATTGA+AGG - chr3_1:85704456-85704475 Msa0382920:CDS 25.0%
! TGACAAATGGAAAGAAAAAA+AGG + chr3_1:85704784-85704803 None:intergenic 25.0%
! AGAATGTGTAATTTAAGCTT+TGG - chr3_1:85704817-85704836 Msa0382920:CDS 25.0%
! ATGAAATGAAATAATGATGG+CGG - chr3_1:85704905-85704924 Msa0382920:intron 25.0%
!!! TATTGATTATTGGTGTTAGT+AGG - chr3_1:85705033-85705052 Msa0382920:intron 25.0%
!!! ATTGATTATTGGTGTTAGTA+GGG - chr3_1:85705034-85705053 Msa0382920:intron 25.0%
!!! ATGTTTGTGTTGACAATTTT+AGG - chr3_1:85705291-85705310 Msa0382920:CDS 25.0%
! CTCAATAAACAACTTATAGA+TGG - chr3_1:85705326-85705345 Msa0382920:CDS 25.0%
! TAATATGTGTTTATGCACAT+TGG + chr3_1:85705611-85705630 None:intergenic 25.0%
! TTACTATAAATTAGCACCAA+AGG - chr3_1:85706018-85706037 Msa0382920:intron 25.0%
!!! CATCTGACATTTTAATTTAC+TGG - chr3_1:85706967-85706986 Msa0382920:five_prime_UTR 25.0%
! TTTGAAGAAAAGAGTGTGTT+GGG + chr3_1:85704260-85704279 None:intergenic 30.0%
! ATGTGGAGATTTGTTTGAAA+GGG + chr3_1:85704283-85704302 None:intergenic 30.0%
! AATGTGGAGATTTGTTTGAA+AGG + chr3_1:85704284-85704303 None:intergenic 30.0%
CCAGATTGTAAAAAGCAATT+GGG + chr3_1:85704372-85704391 None:intergenic 30.0%
!!! CCAATTGCTTTTTACAATCT+GGG - chr3_1:85704370-85704389 Msa0382920:CDS 30.0%
CAGTTACCAAAATTCGAAAA+TGG + chr3_1:85704402-85704421 None:intergenic 30.0%
!! CATTTTCGAATTTTGGTAAC+TGG - chr3_1:85704400-85704419 Msa0382920:CDS 30.0%
AAAACTAGGACTAGAATAGA+AGG - chr3_1:85704860-85704879 Msa0382920:CDS 30.0%
TGAAATGAAATAATGATGGC+GGG - chr3_1:85704906-85704925 Msa0382920:intron 30.0%
AAAAGAGAATAACGACACAT+GGG + chr3_1:85705461-85705480 None:intergenic 30.0%
AATGAAAGAAGACAAAACGA+AGG + chr3_1:85705484-85705503 None:intergenic 30.0%
AAAAACTCCATAGCTAGTAA+AGG + chr3_1:85705640-85705659 None:intergenic 30.0%
CAGTTGACAAGAATAGATAT+AGG - chr3_1:85705661-85705680 Msa0382920:intron 30.0%
AAGTAACGTTATATGTCGAA+TGG - chr3_1:85705730-85705749 Msa0382920:intron 30.0%
ACAAGAAATTAGCATACCTT+TGG + chr3_1:85706037-85706056 None:intergenic 30.0%
GAGCATGAAAATGGAAATAT+GGG + chr3_1:85706135-85706154 None:intergenic 30.0%
AGAGCATGAAAATGGAAATA+TGG + chr3_1:85706136-85706155 None:intergenic 30.0%
!! GTCTATGATGGATATCTTAA+CGG - chr3_1:85706364-85706383 Msa0382920:intron 30.0%
!! TCTATGATGGATATCTTAAC+GGG - chr3_1:85706365-85706384 Msa0382920:intron 30.0%
TGAATCTCAATTCTCATAAG+AGG + chr3_1:85706847-85706866 None:intergenic 30.0%
TGAGATTCATTTGTAACTGT+AGG - chr3_1:85706858-85706877 Msa0382920:five_prime_UTR 30.0%
! GTTTGAAGAAAAGAGTGTGT+TGG + chr3_1:85704261-85704280 None:intergenic 35.0%
!!! CCCAATTGCTTTTTACAATC+TGG - chr3_1:85704369-85704388 Msa0382920:CDS 35.0%
CCCAGATTGTAAAAAGCAAT+TGG + chr3_1:85704373-85704392 None:intergenic 35.0%
TTTCTGCATGGTAAAACAAG+AGG + chr3_1:85704582-85704601 None:intergenic 35.0%
CACTACATGAAAGTGACAAA+TGG + chr3_1:85704797-85704816 None:intergenic 35.0%
!! TTGTGTTGACAATTTTAGGC+AGG - chr3_1:85705295-85705314 Msa0382920:CDS 35.0%
!! TGTGTTGACAATTTTAGGCA+GGG - chr3_1:85705296-85705315 Msa0382920:CDS 35.0%
TAAGTTGTTTATTGAGCCCA+TGG + chr3_1:85705322-85705341 None:intergenic 35.0%
AGTACTCCAATCAAGATAAG+CGG + chr3_1:85705385-85705404 None:intergenic 35.0%
AAAGAGAATAACGACACATG+GGG + chr3_1:85705460-85705479 None:intergenic 35.0%
GAAAAGAGAATAACGACACA+TGG + chr3_1:85705462-85705481 None:intergenic 35.0%
AATTGGTACTGCTTTACCTT+TGG - chr3_1:85705579-85705598 Msa0382920:intron 35.0%
TTATCCTCGAGAATGAACTT+TGG + chr3_1:85705819-85705838 None:intergenic 35.0%
ATTTCCCAGTGGATATTGAA+AGG - chr3_1:85705841-85705860 Msa0382920:CDS 35.0%
CTATCCTTTCAATATCCACT+GGG + chr3_1:85705848-85705867 None:intergenic 35.0%
ACTATCCTTTCAATATCCAC+TGG + chr3_1:85705849-85705868 None:intergenic 35.0%
! TAATTTCTTGTCCGCGTTTT+TGG - chr3_1:85706046-85706065 Msa0382920:intron 35.0%
TTTGTACTTGTCCAAAAACG+CGG + chr3_1:85706060-85706079 None:intergenic 35.0%
CAAAGACATAAATCTGACTG+AGG - chr3_1:85706076-85706095 Msa0382920:intron 35.0%
ACATAAATCTGACTGAGGTT+TGG - chr3_1:85706081-85706100 Msa0382920:intron 35.0%
CATAAATCTGACTGAGGTTT+GGG - chr3_1:85706082-85706101 Msa0382920:intron 35.0%
! TTTTGGTCTGCTACAAAAGT+TGG - chr3_1:85706109-85706128 Msa0382920:intron 35.0%
!! TGTATTGATTGTCATGTCAG+AGG + chr3_1:85706160-85706179 None:intergenic 35.0%
TGATTGTAGTTTCTGACTGT+AGG - chr3_1:85706209-85706228 Msa0382920:intron 35.0%
!! AGTTTTGTAGTCATGAGTTC+AGG + chr3_1:85706472-85706491 None:intergenic 35.0%
TATGATGAGAAATTCGTCCT+CGG + chr3_1:85706500-85706519 None:intergenic 35.0%
! AAAATGCTGTAGATTTTGCG+CGG - chr3_1:85706554-85706573 Msa0382920:CDS 35.0%
AGACAATTTAGCTGTTGTTG+TGG - chr3_1:85706654-85706673 Msa0382920:CDS 35.0%
! GAAAGAGTTGCAAAGCTTTT+TGG - chr3_1:85706756-85706775 Msa0382920:five_prime_UTR 35.0%
TGAGTTTGCGCAAGTATTTA+TGG - chr3_1:85706792-85706811 Msa0382920:five_prime_UTR 35.0%
!! AACTGTAGGTGTTACTTGTT+AGG - chr3_1:85706901-85706920 Msa0382920:five_prime_UTR 35.0%
! TGTTACTTGTTAGGTGTAGT+AGG - chr3_1:85706910-85706929 Msa0382920:five_prime_UTR 35.0%
CTTTCTGACTGTATCATATG+CGG - chr3_1:85706944-85706963 Msa0382920:five_prime_UTR 35.0%
AGAATGACCGTCGTAAATGA+AGG + chr3_1:85704229-85704248 None:intergenic 40.0%
! AAAAGAGTGTGTTGGGAAAG+AGG + chr3_1:85704253-85704272 None:intergenic 40.0%
GAAGGGTGGTTTAACAAATG+TGG + chr3_1:85704300-85704319 None:intergenic 40.0%
TTATATGTCGGCGATTCGAA+GGG + chr3_1:85704317-85704336 None:intergenic 40.0%
TTTATATGTCGGCGATTCGA+AGG + chr3_1:85704318-85704337 None:intergenic 40.0%
!!! GGGTCTGTGTTTTTGAAGTT+TGG - chr3_1:85704421-85704440 Msa0382920:CDS 40.0%
GGTGTGAATTGTTTCAGTGA+AGG - chr3_1:85704477-85704496 Msa0382920:CDS 40.0%
!! ATGGATGGATTAGGATTTGG+AGG + chr3_1:85704525-85704544 None:intergenic 40.0%
!! GCAATGGATGGATTAGGATT+TGG + chr3_1:85704528-85704547 None:intergenic 40.0%
TTGACGAAAAGCAGAAGCAA+TGG + chr3_1:85704544-85704563 None:intergenic 40.0%
! CGAACAAGAGATTTTCTGCA+TGG + chr3_1:85704594-85704613 None:intergenic 40.0%
!!! GAAATAATGATGGCGGGTTT+TGG - chr3_1:85704912-85704931 Msa0382920:intron 40.0%
!!! GGTTTTGGTTTGGTCAGATT+GGG - chr3_1:85704927-85704946 Msa0382920:intron 40.0%
!!! GTTTTGGTTTGGTCAGATTG+GGG - chr3_1:85704928-85704947 Msa0382920:intron 40.0%
TGGATTCAGTTTGCAACCTT+AGG - chr3_1:85705004-85705023 Msa0382920:intron 40.0%
! GGTGTTAGTAGGGTTATTTC+TGG - chr3_1:85705044-85705063 Msa0382920:intron 40.0%
TCTGTTGAGGATGTTACTGA+AGG - chr3_1:85705188-85705207 Msa0382920:CDS 40.0%
ACACATCCTCCATATTTGAC+CGG + chr3_1:85705271-85705290 None:intergenic 40.0%
!! TATACCCCATAGAAAGCACT+CGG + chr3_1:85705353-85705372 None:intergenic 40.0%
GAACTTCCAAAAGATGCCAT+CGG + chr3_1:85705523-85705542 None:intergenic 40.0%
ACGTTATATGTCGAATGGCT+TGG - chr3_1:85705735-85705754 Msa0382920:intron 40.0%
TTTGCCAAAGTTCATTCTCG+AGG - chr3_1:85705812-85705831 Msa0382920:CDS 40.0%
TGCATAGTCTGTTTGCAGAA+AGG + chr3_1:85705880-85705899 None:intergenic 40.0%
GCAAACAGACTATGCATTTG+CGG - chr3_1:85705884-85705903 Msa0382920:CDS 40.0%
!! GCATTGGCTACTCTTGTTAT+AGG - chr3_1:85705948-85705967 Msa0382920:CDS 40.0%
! TGGCTACTCTTGTTATAGGA+AGG - chr3_1:85705952-85705971 Msa0382920:CDS 40.0%
! ACTCTTGTTATAGGAAGGTC+AGG - chr3_1:85705957-85705976 Msa0382920:intron 40.0%
!! ACTGAGGTTTGGGATCTTTT+TGG - chr3_1:85706092-85706111 Msa0382920:intron 40.0%
! TCAGAGGAAGAGCATGAAAA+TGG + chr3_1:85706144-85706163 None:intergenic 40.0%
CTTAATGTTGCTCGAGCTAT+TGG - chr3_1:85706391-85706410 Msa0382920:intron 40.0%
GAAGGAATGAAAGGCAAAGA+TGG - chr3_1:85706427-85706446 Msa0382920:intron 40.0%
GAGGACGAATTTCTCATCAT+AGG - chr3_1:85706499-85706518 Msa0382920:intron 40.0%
! GCGCAAAATCTACAGCATTT+TGG + chr3_1:85706555-85706574 None:intergenic 40.0%
!! GAGGCTTTGAAGAGAAAAAG+TGG - chr3_1:85706631-85706650 Msa0382920:CDS 40.0%
! GCAAAGCTTTTTGGATAGCT+TGG - chr3_1:85706765-85706784 Msa0382920:five_prime_UTR 40.0%
ATGACCGTCGTAAATGAAGG+CGG + chr3_1:85704226-85704245 None:intergenic 45.0%
! GCAGAAGCAATGGATGGATT+AGG + chr3_1:85704534-85704553 None:intergenic 45.0%
CGAAAAGCAGAAGCAATGGA+TGG + chr3_1:85704540-85704559 None:intergenic 45.0%
GGTTTCTTACAAGAGAAGCG+TGG + chr3_1:85704617-85704636 None:intergenic 45.0%
!!! AATGATGGCGGGTTTTGGTT+TGG - chr3_1:85704917-85704936 Msa0382920:intron 45.0%
!!! GGGTTTTGGTTTGGTCAGAT+TGG - chr3_1:85704926-85704945 Msa0382920:intron 45.0%
GTTGTCTGATGCATCTGTTG+AGG - chr3_1:85705175-85705194 Msa0382920:CDS 45.0%
!! GCTTTGGAAGGAAATCAGAC+TGG + chr3_1:85705217-85705236 None:intergenic 45.0%
TATCGGGTTCCGGTCAAATA+TGG - chr3_1:85705259-85705278 Msa0382920:CDS 45.0%
! ACAATTTTAGGCAGGGCCAT+GGG - chr3_1:85705303-85705322 Msa0382920:CDS 45.0%
ATGGACCGAGTGCTTTCTAT+GGG - chr3_1:85705345-85705364 Msa0382920:CDS 45.0%
CTCTCTCCGCTTATCTTGAT+TGG - chr3_1:85705376-85705395 Msa0382920:intron 45.0%
GTACTGCTTTACCTTTGGTG+TGG - chr3_1:85705584-85705603 Msa0382920:intron 45.0%
!! ATATGTCGAATGGCTTGGTC+AGG - chr3_1:85705740-85705759 Msa0382920:intron 45.0%
CGAGGATAAAGATTTCCCAG+TGG - chr3_1:85705830-85705849 Msa0382920:CDS 45.0%
AACAAGAGTAGCCAATGCAG+TGG + chr3_1:85705946-85705965 None:intergenic 45.0%
AGTTTCTGACTGTAGGTTGC+TGG - chr3_1:85706216-85706235 Msa0382920:intron 45.0%
!! TGTCGATTGCTTTTCCACGA+CGG + chr3_1:85706279-85706298 None:intergenic 45.0%
ATGTCAAGAGACCACAAACC+AGG - chr3_1:85706298-85706317 Msa0382920:intron 45.0%
! CTTTCATGCAACCTGGTTTG+TGG + chr3_1:85706312-85706331 None:intergenic 45.0%
TGGCACATGGAAGGAATGAA+AGG - chr3_1:85706418-85706437 Msa0382920:intron 45.0%
GGAATGAAAGGCAAAGATGG+TGG - chr3_1:85706430-85706449 Msa0382920:intron 45.0%
GACTACAAAACTTACTGCCG+AGG - chr3_1:85706480-85706499 Msa0382920:intron 45.0%
TTTCTCATCATAGGCTGCGA+TGG - chr3_1:85706508-85706527 Msa0382920:intron 45.0%
TTCTCATCATAGGCTGCGAT+GGG - chr3_1:85706509-85706528 Msa0382920:CDS 45.0%
GATCCTTACTGCATACAGCT+GGG + chr3_1:85706603-85706622 None:intergenic 45.0%
AGATCCTTACTGCATACAGC+TGG + chr3_1:85706604-85706623 None:intergenic 45.0%
AGCTGTATGCAGTAAGGATC+TGG - chr3_1:85706603-85706622 Msa0382920:CDS 45.0%
! CAGTAAGGATCTGGTTGATG+AGG - chr3_1:85706612-85706631 Msa0382920:CDS 45.0%
! TTTGGGTTTCGAAGATGCGG+TGG + chr3_1:85704183-85704202 None:intergenic 50.0%
! GGGTTTGGGTTTCGAAGATG+CGG + chr3_1:85704186-85704205 None:intergenic 50.0%
TCGTAAATGAAGGCGGTGGT+CGG + chr3_1:85704219-85704238 None:intergenic 50.0%
ACCACCGCCTTCATTTACGA+CGG - chr3_1:85704219-85704238 Msa0382920:intron 50.0%
TTCCTTCCAAAGCTCCGTTC+CGG - chr3_1:85705224-85705243 Msa0382920:CDS 50.0%
TATCAGCACATCCTCCGGAA+CGG + chr3_1:85705241-85705260 None:intergenic 50.0%
! TCCGGAGGATGTGCTGATAT+CGG - chr3_1:85705242-85705261 Msa0382920:CDS 50.0%
! GATGTGCTGATATCGGGTTC+CGG - chr3_1:85705249-85705268 Msa0382920:CDS 50.0%
! GACAATTTTAGGCAGGGCCA+TGG - chr3_1:85705302-85705321 Msa0382920:CDS 50.0%
GATGGACCGAGTGCTTTCTA+TGG - chr3_1:85705344-85705363 Msa0382920:CDS 50.0%
TGGACCGAGTGCTTTCTATG+GGG - chr3_1:85705346-85705365 Msa0382920:CDS 50.0%
! GCACATCCGATGGCATCTTT+TGG - chr3_1:85705514-85705533 Msa0382920:intron 50.0%
TGCACATTGGTCCACACCAA+AGG + chr3_1:85705598-85705617 None:intergenic 50.0%
AGACGCGCCTTTACTAGCTA+TGG - chr3_1:85705630-85705649 Msa0382920:intron 50.0%
!! TGGCTTGGTCAGGTGTTTGA+TGG - chr3_1:85705750-85705769 Msa0382920:intron 50.0%
! GGTCAGGTGTTTGATGGACA+CGG - chr3_1:85705756-85705775 Msa0382920:intron 50.0%
TTCTGACTGTAGGTTGCTGG+TGG - chr3_1:85706219-85706238 Msa0382920:intron 50.0%
CTCTGCTCTTTCATGCAACC+TGG + chr3_1:85706319-85706338 None:intergenic 50.0%
CAGGTTGCATGAAAGAGCAG+AGG - chr3_1:85706317-85706336 Msa0382920:intron 50.0%
! TTGCTCGAGCTATTGGTGAC+TGG - chr3_1:85706398-85706417 Msa0382920:intron 50.0%
! AGCTATTGGTGACTGGCACA+TGG - chr3_1:85706405-85706424 Msa0382920:intron 50.0%
! ATTGGTGACTGGCACATGGA+AGG - chr3_1:85706409-85706428 Msa0382920:intron 50.0%
TCATAGGCTGCGATGGGATT+TGG - chr3_1:85706515-85706534 Msa0382920:CDS 50.0%
CATAGGCTGCGATGGGATTT+GGG - chr3_1:85706516-85706535 Msa0382920:CDS 50.0%
! GGTGCTACCAAATTTGGTGG+AGG + chr3_1:85706697-85706716 None:intergenic 50.0%
!! CGTGGTGCTACCAAATTTGG+TGG + chr3_1:85706700-85706719 None:intergenic 50.0%
!! GAGCGTGGTGCTACCAAATT+TGG + chr3_1:85706703-85706722 None:intergenic 50.0%
TAAATGAAGGCGGTGGTCGG+TGG + chr3_1:85704216-85704235 None:intergenic 55.0%
ACCGTCGTAAATGAAGGCGG+TGG + chr3_1:85704223-85704242 None:intergenic 55.0%
TATGTCGGCGATTCGAAGGG+TGG + chr3_1:85704314-85704333 None:intergenic 55.0%
CCCGATATCAGCACATCCTC+CGG + chr3_1:85705246-85705265 None:intergenic 55.0%
! CCGGAGGATGTGCTGATATC+GGG - chr3_1:85705243-85705262 Msa0382920:CDS 55.0%
CGGGTTCCGGTCAAATATGG+AGG - chr3_1:85705262-85705281 Msa0382920:CDS 55.0%
CTCCTGTTCTGCACATCCGA+TGG - chr3_1:85705504-85705523 Msa0382920:intron 55.0%
TGCCATCGGATGTGCAGAAC+AGG + chr3_1:85705509-85705528 None:intergenic 55.0%
! CAGGTGTTTGATGGACACGG+CGG - chr3_1:85705759-85705778 Msa0382920:intron 55.0%
CTCAATGCTGCCCTTGCATC+CGG - chr3_1:85705918-85705937 Msa0382920:CDS 55.0%
AGTAGCCAATGCAGTGGTGC+CGG + chr3_1:85705940-85705959 None:intergenic 55.0%
TGACTGTAGGTTGCTGGTGG+TGG - chr3_1:85706222-85706241 Msa0382920:intron 55.0%
!! TTGCTGGTGGTGGCAAATGC+TGG - chr3_1:85706232-85706251 Msa0382920:intron 55.0%
! GAAAGAGCAGAGGCGTATCG+AGG - chr3_1:85706327-85706346 Msa0382920:intron 55.0%
! AGAGGCGTATCGAGGCATCT+GGG - chr3_1:85706335-85706354 Msa0382920:intron 55.0%
TCTGGGGGGTCTGTCTATGA+TGG - chr3_1:85706352-85706371 Msa0382920:intron 55.0%
AGTTCAGGCTCTGCACTGAG+TGG + chr3_1:85706457-85706476 None:intergenic 55.0%
CGACCCAGCTGTATGCAGTA+AGG - chr3_1:85706597-85706616 Msa0382920:CDS 55.0%
GCAGCAGCCTCCACCAAATT+TGG - chr3_1:85706687-85706706 Msa0382920:five_prime_UTR 55.0%
AGAGAAGCTCCTGTGCACTC+TGG + chr3_1:85706725-85706744 None:intergenic 55.0%
CACAGGAGCTTCTCTGCTGA+AGG - chr3_1:85706730-85706749 Msa0382920:five_prime_UTR 55.0%
TCGGTGGTCGGTGAGGGTTT+GGG + chr3_1:85704200-85704219 None:intergenic 60.0%
!! CTCCGGAACGGAGCTTTGGA+AGG + chr3_1:85705229-85705248 None:intergenic 60.0%
CTTCCAAAGCTCCGTTCCGG+AGG - chr3_1:85705227-85705246 Msa0382920:CDS 60.0%
CATCCTCCGGAACGGAGCTT+TGG + chr3_1:85705233-85705252 None:intergenic 60.0%
! TGCAGTGGTGCCGGATGCAA+GGG + chr3_1:85705931-85705950 None:intergenic 60.0%
! ATGCAGTGGTGCCGGATGCA+AGG + chr3_1:85705932-85705951 None:intergenic 60.0%
TGCATCCGGCACCACTGCAT+TGG - chr3_1:85705932-85705951 Msa0382920:CDS 60.0%
! CAGAGGCGTATCGAGGCATC+TGG - chr3_1:85706334-85706353 Msa0382920:intron 60.0%
! GAGGCGTATCGAGGCATCTG+GGG - chr3_1:85706336-85706355 Msa0382920:intron 60.0%
! AGGCGTATCGAGGCATCTGG+GGG - chr3_1:85706337-85706356 Msa0382920:intron 60.0%
! CTGTAGATTTTGCGCGGCGC+AGG - chr3_1:85706560-85706579 Msa0382920:CDS 60.0%
GTCGGTGGTCGGTGAGGGTT+TGG + chr3_1:85704201-85704220 None:intergenic 65.0%
TGAAGGCGGTGGTCGGTGGT+CGG + chr3_1:85704212-85704231 None:intergenic 65.0%
! GGCGTATCGAGGCATCTGGG+GGG - chr3_1:85706338-85706357 Msa0382920:intron 65.0%
! TTTTGCGCGGCGCAGGCTTC+AGG - chr3_1:85706567-85706586 Msa0382920:CDS 65.0%
CACCACGCTCCAGAGTGCAC+AGG - chr3_1:85706713-85706732 Msa0382920:five_prime_UTR 65.0%
!! CTCCTGTGCACTCTGGAGCG+TGG + chr3_1:85706718-85706737 None:intergenic 65.0%
CGGTGGTCGGTGGTCGGTGA+GGG + chr3_1:85704206-85704225 None:intergenic 70.0%
CGAGCAGTGCTGTGCCGTCG+TGG - chr3_1:85706262-85706281 Msa0382920:intron 70.0%
GCGGTGGTCGGTGGTCGGTG+AGG + chr3_1:85704207-85704226 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 85704119 85707016 85704119 ID=Msa0382920;Name=Msa0382920
chr3_1 mRNA 85704119 85707016 85704119 ID=Msa0382920-mRNA-1;Parent=Msa0382920;Name=Msa0382920-mRNA-1;_AED=0.12;_eAED=0.12;_QI=343|1|1|1|0.75|0.6|5|114|408
chr3_1 exon 85704119 85704226 85704119 ID=Msa0382920-mRNA-1:exon:22600;Parent=Msa0382920-mRNA-1
chr3_1 exon 85704256 85704904 85704256 ID=Msa0382920-mRNA-1:exon:22599;Parent=Msa0382920-mRNA-1
chr3_1 exon 85705162 85705373 85705162 ID=Msa0382920-mRNA-1:exon:22598;Parent=Msa0382920-mRNA-1
chr3_1 exon 85705768 85705974 85705768 ID=Msa0382920-mRNA-1:exon:22597;Parent=Msa0382920-mRNA-1
chr3_1 exon 85706509 85707016 85706509 ID=Msa0382920-mRNA-1:exon:22596;Parent=Msa0382920-mRNA-1
chr3_1 five_prime_UTR 85706674 85707016 85706674 ID=Msa0382920-mRNA-1:five_prime_utr;Parent=Msa0382920-mRNA-1
chr3_1 CDS 85706509 85706673 85706509 ID=Msa0382920-mRNA-1:cds;Parent=Msa0382920-mRNA-1
chr3_1 CDS 85705768 85705974 85705768 ID=Msa0382920-mRNA-1:cds;Parent=Msa0382920-mRNA-1
chr3_1 CDS 85705162 85705373 85705162 ID=Msa0382920-mRNA-1:cds;Parent=Msa0382920-mRNA-1
chr3_1 CDS 85704262 85704904 85704262 ID=Msa0382920-mRNA-1:cds;Parent=Msa0382920-mRNA-1
chr3_1 three_prime_UTR 85704256 85704261 85704256 ID=Msa0382920-mRNA-1:three_prime_utr;Parent=Msa0382920-mRNA-1
chr3_1 three_prime_UTR 85704119 85704226 85704119 ID=Msa0382920-mRNA-1:three_prime_utr;Parent=Msa0382920-mRNA-1
Gene Sequence

>Msa0382920

ATGGAAGAAATTGAAGGTGTGAATTGTTTCAGTGAAGGTAGAAGCTCTAGTGAGAGTCGACCTCCAAATCCTAATCCATCCATTGCTTCTGCTTTTCGTCAATGTCAACGCAATGATCCTCTTGTTTTACCATGCAGAAAATCTCTTGTTCGCCACGCTTCTCTTCAGACGAAAATGAAGTTGTCTGATGCATCTGTTGAGGATGTTACTGAAGGTTGCCAGTCTGATTTCCTTCCAAAGCTCCGTTCCGGAGGATGTGCTGATATCGGGTTCCGGTCAAATATGGAGGATGTGTATGTTTGTGTTGACAATTTTAGGCAGGGCCATGGGCTCAATAAACAACTTATAGATGGACCGAGTGCTTTCTATGGGGTGTTTGATGGACACGGCGGAAAGCATGCTGCTGACTTTGCTTGCAATCATTTGCCAAAGTTCATTCTCGAGGATAAAGATTTCCCAGTGGATATTGAAAGGATAGTTGCTTCTGCCTTTCTGCAAACAGACTATGCATTTGCGGAAGCTTGTTCTCTCAATGCTGCCCTTGCATCCGGCACCACTGCATTGGCTACTCTTGTTATAGGAAGGTTGCTGGTGGTGGCAAATGCTGGAGATTGTCGAGCAGTGCTGTGCCGTCGTGGAAAAGCAATCGACATGTCAAGAGACCACAAACCAGGTTGCATGAAAGAGCAGAGGCGTATCGAGGCATCTGGGGGGTCTGTCTATGATGGATATCTTAACGGGCAACTTAATGTTGCTCGAGCTATTGGTGACTGGCACATGGAAGGAATGAAAGGCAAAGATGGTGGACCACTCAGTGCAGAGCCTGAACTCATGACTACAAAACTTACTGCCGAGGACGAATTTCTCATCATAGGCTGCGATGGGATTTGGGATGTTTTTAGAAGCCAAAATGCTGTAGATTTTGCGCGGCGCAGGCTTCAGGTGCATAACGACCCAGCTGTATGCAGTAAGGATCTGGTTGATGAGGCTTTGAAGAGAAAAAGTGGAGACAATTTAGCTGTTGTTGTGGTTTGCTTTCAGCAGCAGCCTCCACCAAATTTGGTAGCACCACGCTCCAGAGTGCACAGGAGCTTCTCTGCTGAAGGTTTGAAAGAGTTGCAAAGCTTTTTGGATAGCTTGGAAAATGAGTTTGCGCAAGTATTTATGGTTCCTTCTTGTTTAATTTTATTTTATGTACCTCTTATGAGAATTGAGATTCATTTGTAA
Protein sequence

>Msa0382920

MEEIEGVNCFSEGRSSSESRPPNPNPSIASAFRQCQRNDPLVLPCRKSLVRHASLQTKMKLSDASVEDVTEGCQSDFLPKLRSGGCADIGFRSNMEDVYVCVDNFRQGHGLNKQLIDGPSAFYGVFDGHGGKHAADFACNHLPKFILEDKDFPVDIERIVASAFLQTDYAFAEACSLNAALASGTTALATLVIGRLLVVANAGDCRAVLCRRGKAIDMSRDHKPGCMKEQRRIEASGGSVYDGYLNGQLNVARAIGDWHMEGMKGKDGGPLSAEPELMTTKLTAEDEFLIIGCDGIWDVFRSQNAVDFARRRLQVHNDPAVCSKDLVDEALKRKSGDNLAVVVVCFQQQPPPNLVAPRSRVHRSFSAEGLKELQSFLDSLENEFAQVFMVPSCLILFYVPLMRIEIHL*