Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383540 | GAU14211.1 | 89.163 | 203 | 20 | 1 | 8 | 208 | 7 | 209 | 6.16e-133 | 382 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383540 | sp|Q07469|BSPA_POPDE | 30.114 | 176 | 110 | 5 | 25 | 199 | 138 | 301 | 3.40e-16 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383540 | A0A1S3E6Z4 | 92.574 | 202 | 14 | 1 | 7 | 208 | 152 | 352 | 4.45e-133 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0383540 | Msa0387090 | 0.858824 | 6.316862e-63 | -8.615850e-47 |
| Msa0383540 | Msa0521810 | 0.908335 | 1.914108e-81 | -8.615850e-47 |
| Msa0383540 | Msa1348780 | 0.826779 | 2.249386e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383540 | MtrunA17_Chr3g0140051 | 90.244 | 205 | 18 | 1 | 7 | 209 | 153 | 357 | 1.08e-135 | 384 |
| Msa0383540 | MtrunA17_Chr3g0140061 | 90.547 | 201 | 17 | 1 | 7 | 205 | 153 | 353 | 3.46e-132 | 375 |
| Msa0383540 | MtrunA17_Chr6g0486081 | 50.510 | 196 | 92 | 2 | 7 | 202 | 146 | 336 | 8.48e-69 | 213 |
| Msa0383540 | MtrunA17_Chr6g0486101 | 50.000 | 196 | 88 | 2 | 7 | 202 | 147 | 332 | 7.63e-65 | 203 |
| Msa0383540 | MtrunA17_Chr6g0486091 | 48.469 | 196 | 91 | 2 | 7 | 202 | 148 | 333 | 1.98e-62 | 197 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383540 | AT4G28940.2 | 58.416 | 202 | 77 | 2 | 7 | 208 | 58 | 252 | 7.74e-82 | 244 |
| Msa0383540 | AT4G28940.1 | 58.416 | 202 | 77 | 2 | 7 | 208 | 150 | 344 | 1.48e-80 | 244 |
| Msa0383540 | AT4G24350.3 | 36.723 | 177 | 107 | 3 | 26 | 202 | 51 | 222 | 2.73e-35 | 124 |
| Msa0383540 | AT4G24340.1 | 38.286 | 175 | 100 | 3 | 28 | 202 | 169 | 335 | 1.68e-34 | 125 |
| Msa0383540 | AT4G24350.1 | 37.143 | 175 | 105 | 3 | 28 | 202 | 164 | 333 | 5.10e-34 | 124 |
| Msa0383540 | AT4G24350.4 | 33.083 | 133 | 86 | 2 | 26 | 158 | 68 | 197 | 9.52e-22 | 89.0 |
| Msa0383540 | AT4G24350.2 | 33.083 | 133 | 86 | 2 | 26 | 158 | 162 | 291 | 5.49e-21 | 88.6 |
Find 58 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTCCCTTCATTGCTATC+AGG | 0.272090 | 3_1:+86453391 | Msa0383540:CDS |
| AACAAAGGCAACATGCTCTT+TGG | 0.272171 | 3_1:+86452883 | Msa0383540:CDS |
| TATCAGGGCTCTTTCTGATT+TGG | 0.324485 | 3_1:+86453407 | Msa0383540:CDS |
| AGAGCATGTTGCCTTTGTTC+AGG | 0.348607 | 3_1:-86452879 | None:intergenic |
| ACAACCAACTCAACAATCTA+TGG | 0.372643 | 3_1:+86452820 | Msa0383540:CDS |
| CCAACGGGGAAAATCTCTTC+TGG | 0.376793 | 3_1:-86452849 | None:intergenic |
| AGGTAGTACTTGGAATCAAC+GGG | 0.405005 | 3_1:-86452909 | None:intergenic |
| CTGTCTACAAGCACAACCTT+TGG | 0.418437 | 3_1:-86453246 | None:intergenic |
| TGTTCAGGAATGCCACCAAC+GGG | 0.418889 | 3_1:-86452864 | None:intergenic |
| AGGGCTCTTTCTGATTTGGC+TGG | 0.421164 | 3_1:+86453411 | Msa0383540:CDS |
| ACAAAGGCAACATGCTCTTT+GGG | 0.425980 | 3_1:+86452884 | Msa0383540:CDS |
| ATTGTATATGTGCAGAGGTA+TGG | 0.431241 | 3_1:+86452684 | Msa0383540:CDS |
| CTTTCTGATTTGGCTGGCGG+CGG | 0.432701 | 3_1:+86453417 | Msa0383540:CDS |
| CTCTTATATGCTTGCAACAA+AGG | 0.444049 | 3_1:+86453370 | Msa0383540:CDS |
| TTTGGCAATAAGGTAGTACT+TGG | 0.451990 | 3_1:-86452919 | None:intergenic |
| TCTAAGGGTAACGTGTCATC+AGG | 0.462269 | 3_1:-86452714 | None:intergenic |
| GTTAAACTTATTGTAGATGA+AGG | 0.469473 | 3_1:-86453313 | None:intergenic |
| GGTACCATAGATTGTTGAGT+TGG | 0.488750 | 3_1:-86452824 | None:intergenic |
| GACCACAGCAACAGAGTTAG+TGG | 0.492352 | 3_1:-86453484 | None:intergenic |
| GGAGATTACACAAGGGAAGT+AGG | 0.493178 | 3_1:+86452744 | Msa0383540:CDS |
| TTGTATATGTGCAGAGGTAT+GGG | 0.494546 | 3_1:+86452685 | Msa0383540:CDS |
| AAGAGCCCTGATAGCAATGA+AGG | 0.499791 | 3_1:-86453397 | None:intergenic |
| TTTACATCAAACTTAAGTGC+TGG | 0.499968 | 3_1:+86452786 | Msa0383540:CDS |
| AAGGTAGTACTTGGAATCAA+CGG | 0.527662 | 3_1:-86452910 | None:intergenic |
| GGCTGATACCTTCTCACCAC+TGG | 0.530809 | 3_1:+86453458 | Msa0383540:CDS |
| GAGATTACACAAGGGAAGTA+GGG | 0.535301 | 3_1:+86452745 | Msa0383540:CDS |
| GATGCACTTTCCATGTCCAC+TGG | 0.544627 | 3_1:-86453342 | None:intergenic |
| GTAGACAGAGGAACAAGTGC+AGG | 0.547219 | 3_1:+86453261 | Msa0383540:CDS |
| GATTCCCTTCATTGCTATCA+GGG | 0.551884 | 3_1:+86453392 | Msa0383540:CDS |
| TAACGTGAGTCCAGTGGACA+TGG | 0.555563 | 3_1:+86453332 | Msa0383540:CDS |
| TTGTTCAGGAATGCCACCAA+CGG | 0.573621 | 3_1:-86452865 | None:intergenic |
| TGAGAAGGTATCAGCCTCGT+TGG | 0.580666 | 3_1:-86453451 | None:intergenic |
| AGTGGCGGCCAGTGGTGAGA+AGG | 0.585903 | 3_1:-86453466 | None:intergenic |
| CGCCACTAACTCTGTTGCTG+TGG | 0.586135 | 3_1:+86453482 | Msa0383540:CDS |
| GGACATGGAAAGTGCATCAG+TGG | 0.586546 | 3_1:+86453347 | Msa0383540:CDS |
| CGGGGAAAATCTCTTCTGGT+TGG | 0.595557 | 3_1:-86452845 | None:intergenic |
| TCATAACATAGTTCACCACT+TGG | 0.603986 | 3_1:-86453541 | None:intergenic |
| GCTCTTTCTGATTTGGCTGG+CGG | 0.606832 | 3_1:+86453414 | Msa0383540:CDS |
| TTTGGCTGGCGGCGGCACTG+CGG | 0.630853 | 3_1:+86453425 | Msa0383540:CDS |
| ATGTGCAGAGGTATGGGCAA+GGG | 0.632644 | 3_1:+86452691 | Msa0383540:CDS |
| ACATAGTTCACCACTTGGAG+TGG | 0.638822 | 3_1:-86453536 | None:intergenic |
| ACAGAGTTAGTGGCGGCCAG+TGG | 0.641871 | 3_1:-86453474 | None:intergenic |
| TATGTGCAGAGGTATGGGCA+AGG | 0.643104 | 3_1:+86452690 | Msa0383540:CDS |
| ACGTTACCCTTAGAAAACAA+TGG | 0.644025 | 3_1:+86452723 | Msa0383540:CDS |
| ATGCTTGACAACGACACCAA+AGG | 0.644624 | 3_1:+86453230 | Msa0383540:CDS |
| AGAGCCCTGATAGCAATGAA+GGG | 0.645404 | 3_1:-86453396 | None:intergenic |
| TTGGTGGCATTCCTGAACAA+AGG | 0.647085 | 3_1:+86452868 | Msa0383540:CDS |
| TGTCATCACACCACTCCAAG+TGG | 0.651383 | 3_1:+86453526 | Msa0383540:CDS |
| TAACGATTGTATATGTGCAG+AGG | 0.653047 | 3_1:+86452679 | Msa0383540:CDS |
| TAAGTTTAACGTGAGTCCAG+TGG | 0.659074 | 3_1:+86453326 | Msa0383540:CDS |
| AAAACAATGGAGATTACACA+AGG | 0.670651 | 3_1:+86452736 | Msa0383540:CDS |
| TAGACAGAGGAACAAGTGCA+GGG | 0.675462 | 3_1:+86453262 | Msa0383540:CDS |
| CGGCACTGCGGAGTCCAACG+AGG | 0.679929 | 3_1:+86453437 | Msa0383540:CDS |
| CACAGCAACAGAGTTAGTGG+CGG | 0.702748 | 3_1:-86453481 | None:intergenic |
| AAGGTTGTGCTTGTAGACAG+AGG | 0.704702 | 3_1:+86453249 | Msa0383540:CDS |
| AAACAATGGAGATTACACAA+GGG | 0.709853 | 3_1:+86452737 | Msa0383540:CDS |
| GTTCAGGAATGCCACCAACG+GGG | 0.730088 | 3_1:-86452863 | None:intergenic |
| GGTAGTACTTGGAATCAACG+GGG | 0.836087 | 3_1:-86452908 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACATTTATATATTTTTGAG+AGG | + | chr3_1:86453048-86453067 | Msa0383540:intron | 15.0% |
| !!! | TACATTTATATATTTTTGAG+AGG | + | chr3_1:86453048-86453067 | Msa0383540:intron | 15.0% |
| !! | TACCATAAATATATATGAGT+AGG | + | chr3_1:86452986-86453005 | Msa0383540:intron | 20.0% |
| !! | ACCATAAATATATATGAGTA+GGG | + | chr3_1:86452987-86453006 | Msa0383540:intron | 20.0% |
| !!! | TATTGTATCCATTTTTTTTG+AGG | + | chr3_1:86453076-86453095 | Msa0383540:intron | 20.0% |
| !!! | ATTGTATCCATTTTTTTTGA+GGG | + | chr3_1:86453077-86453096 | Msa0383540:intron | 20.0% |
| !! | ATTATGTGGTTATGTTTATT+CGG | + | chr3_1:86453159-86453178 | Msa0383540:intron | 20.0% |
| !!! | TTTATTCGGATATATTTTTC+AGG | + | chr3_1:86453173-86453192 | Msa0383540:intron | 20.0% |
| !! | TACCATAAATATATATGAGT+AGG | + | chr3_1:86452986-86453005 | Msa0383540:intron | 20.0% |
| !! | ACCATAAATATATATGAGTA+GGG | + | chr3_1:86452987-86453006 | Msa0383540:intron | 20.0% |
| !!! | TATTGTATCCATTTTTTTTG+AGG | + | chr3_1:86453076-86453095 | Msa0383540:intron | 20.0% |
| !!! | ATTGTATCCATTTTTTTTGA+GGG | + | chr3_1:86453077-86453096 | Msa0383540:intron | 20.0% |
| !! | ATTATGTGGTTATGTTTATT+CGG | + | chr3_1:86453159-86453178 | Msa0383540:intron | 20.0% |
| !!! | TTTATTCGGATATATTTTTC+AGG | + | chr3_1:86453173-86453192 | Msa0383540:intron | 20.0% |
| !! | TAATCTCCATTGTTTTCTAA+GGG | - | chr3_1:86452732-86452751 | None:intergenic | 25.0% |
| !!! | ATTACATACCTCTAGTTTTT+TGG | - | chr3_1:86452940-86452959 | None:intergenic | 25.0% |
| !! | CTAGAGGTATGTAATTAATT+AGG | + | chr3_1:86452945-86452964 | Msa0383540:intron | 25.0% |
| ! | ACCCTACTCATATATATTTA+TGG | - | chr3_1:86452991-86453010 | None:intergenic | 25.0% |
| ! | ACTACATGATACAAATTATG+TGG | + | chr3_1:86453145-86453164 | Msa0383540:intron | 25.0% |
| ! | GTTAAACTTATTGTAGATGA+AGG | - | chr3_1:86453316-86453335 | None:intergenic | 25.0% |
| !! | TAATCTCCATTGTTTTCTAA+GGG | - | chr3_1:86452732-86452751 | None:intergenic | 25.0% |
| !!! | ATTACATACCTCTAGTTTTT+TGG | - | chr3_1:86452940-86452959 | None:intergenic | 25.0% |
| !! | CTAGAGGTATGTAATTAATT+AGG | + | chr3_1:86452945-86452964 | Msa0383540:intron | 25.0% |
| ! | ACCCTACTCATATATATTTA+TGG | - | chr3_1:86452991-86453010 | None:intergenic | 25.0% |
| ! | ACTACATGATACAAATTATG+TGG | + | chr3_1:86453145-86453164 | Msa0383540:intron | 25.0% |
| ! | GTTAAACTTATTGTAGATGA+AGG | - | chr3_1:86453316-86453335 | None:intergenic | 25.0% |
| ! | GTAATCTCCATTGTTTTCTA+AGG | - | chr3_1:86452733-86452752 | None:intergenic | 30.0% |
| AAAACAATGGAGATTACACA+AGG | + | chr3_1:86452736-86452755 | Msa0383540:CDS | 30.0% | |
| AAACAATGGAGATTACACAA+GGG | + | chr3_1:86452737-86452756 | Msa0383540:CDS | 30.0% | |
| TTTACATCAAACTTAAGTGC+TGG | + | chr3_1:86452786-86452805 | Msa0383540:CDS | 30.0% | |
| AATTGCTCCCTCAAAAAAAA+TGG | - | chr3_1:86453087-86453106 | None:intergenic | 30.0% | |
| !!! | TATTTTTCAGGAAATGAAGC+TGG | + | chr3_1:86453185-86453204 | Msa0383540:intron | 30.0% |
| ! | GTAATCTCCATTGTTTTCTA+AGG | - | chr3_1:86452733-86452752 | None:intergenic | 30.0% |
| AAAACAATGGAGATTACACA+AGG | + | chr3_1:86452736-86452755 | Msa0383540:CDS | 30.0% | |
| AAACAATGGAGATTACACAA+GGG | + | chr3_1:86452737-86452756 | Msa0383540:CDS | 30.0% | |
| TTTACATCAAACTTAAGTGC+TGG | + | chr3_1:86452786-86452805 | Msa0383540:CDS | 30.0% | |
| AATTGCTCCCTCAAAAAAAA+TGG | - | chr3_1:86453087-86453106 | None:intergenic | 30.0% | |
| !!! | TATTTTTCAGGAAATGAAGC+TGG | + | chr3_1:86453185-86453204 | Msa0383540:intron | 30.0% |
| TAACGATTGTATATGTGCAG+AGG | + | chr3_1:86452679-86452698 | Msa0383540:CDS | 35.0% | |
| ATTGTATATGTGCAGAGGTA+TGG | + | chr3_1:86452684-86452703 | Msa0383540:CDS | 35.0% | |
| ! | TTGTATATGTGCAGAGGTAT+GGG | + | chr3_1:86452685-86452704 | Msa0383540:CDS | 35.0% |
| ACGTTACCCTTAGAAAACAA+TGG | + | chr3_1:86452723-86452742 | Msa0383540:CDS | 35.0% | |
| ACAACCAACTCAACAATCTA+TGG | + | chr3_1:86452820-86452839 | Msa0383540:CDS | 35.0% | |
| AAGGTAGTACTTGGAATCAA+CGG | - | chr3_1:86452913-86452932 | None:intergenic | 35.0% | |
| TTTGGCAATAAGGTAGTACT+TGG | - | chr3_1:86452922-86452941 | None:intergenic | 35.0% | |
| !!! | CCTCTAGTTTTTTGGCAATA+AGG | - | chr3_1:86452932-86452951 | None:intergenic | 35.0% |
| CCTTATTGCCAAAAAACTAG+AGG | + | chr3_1:86452929-86452948 | Msa0383540:CDS | 35.0% | |
| GGTATGTAATTAATTAGGCC+TGG | + | chr3_1:86452950-86452969 | Msa0383540:intron | 35.0% | |
| TGGTATAGTAGTTTGAATCC+AGG | - | chr3_1:86452971-86452990 | None:intergenic | 35.0% | |
| CTCTTATATGCTTGCAACAA+AGG | + | chr3_1:86453370-86453389 | Msa0383540:CDS | 35.0% | |
| TAACGATTGTATATGTGCAG+AGG | + | chr3_1:86452679-86452698 | Msa0383540:CDS | 35.0% | |
| ATTGTATATGTGCAGAGGTA+TGG | + | chr3_1:86452684-86452703 | Msa0383540:CDS | 35.0% | |
| ! | TTGTATATGTGCAGAGGTAT+GGG | + | chr3_1:86452685-86452704 | Msa0383540:CDS | 35.0% |
| ACGTTACCCTTAGAAAACAA+TGG | + | chr3_1:86452723-86452742 | Msa0383540:CDS | 35.0% | |
| ACAACCAACTCAACAATCTA+TGG | + | chr3_1:86452820-86452839 | Msa0383540:CDS | 35.0% | |
| AAGGTAGTACTTGGAATCAA+CGG | - | chr3_1:86452913-86452932 | None:intergenic | 35.0% | |
| TTTGGCAATAAGGTAGTACT+TGG | - | chr3_1:86452922-86452941 | None:intergenic | 35.0% | |
| !!! | CCTCTAGTTTTTTGGCAATA+AGG | - | chr3_1:86452932-86452951 | None:intergenic | 35.0% |
| CCTTATTGCCAAAAAACTAG+AGG | + | chr3_1:86452929-86452948 | Msa0383540:CDS | 35.0% | |
| GGTATGTAATTAATTAGGCC+TGG | + | chr3_1:86452950-86452969 | Msa0383540:intron | 35.0% | |
| TGGTATAGTAGTTTGAATCC+AGG | - | chr3_1:86452971-86452990 | None:intergenic | 35.0% | |
| CTCTTATATGCTTGCAACAA+AGG | + | chr3_1:86453370-86453389 | Msa0383540:CDS | 35.0% | |
| GAGATTACACAAGGGAAGTA+GGG | + | chr3_1:86452745-86452764 | Msa0383540:CDS | 40.0% | |
| GGTACCATAGATTGTTGAGT+TGG | - | chr3_1:86452827-86452846 | None:intergenic | 40.0% | |
| AACAAAGGCAACATGCTCTT+TGG | + | chr3_1:86452883-86452902 | Msa0383540:CDS | 40.0% | |
| ACAAAGGCAACATGCTCTTT+GGG | + | chr3_1:86452884-86452903 | Msa0383540:CDS | 40.0% | |
| AGGTAGTACTTGGAATCAAC+GGG | - | chr3_1:86452912-86452931 | None:intergenic | 40.0% | |
| !! | TTTTCAGGAAATGAAGCTGG+AGG | + | chr3_1:86453188-86453207 | Msa0383540:intron | 40.0% |
| TAAGTTTAACGTGAGTCCAG+TGG | + | chr3_1:86453326-86453345 | Msa0383540:CDS | 40.0% | |
| GATTCCCTTCATTGCTATCA+GGG | + | chr3_1:86453392-86453411 | Msa0383540:CDS | 40.0% | |
| TATCAGGGCTCTTTCTGATT+TGG | + | chr3_1:86453407-86453426 | Msa0383540:CDS | 40.0% | |
| GAGATTACACAAGGGAAGTA+GGG | + | chr3_1:86452745-86452764 | Msa0383540:CDS | 40.0% | |
| GGTACCATAGATTGTTGAGT+TGG | - | chr3_1:86452827-86452846 | None:intergenic | 40.0% | |
| AACAAAGGCAACATGCTCTT+TGG | + | chr3_1:86452883-86452902 | Msa0383540:CDS | 40.0% | |
| ACAAAGGCAACATGCTCTTT+GGG | + | chr3_1:86452884-86452903 | Msa0383540:CDS | 40.0% | |
| AGGTAGTACTTGGAATCAAC+GGG | - | chr3_1:86452912-86452931 | None:intergenic | 40.0% | |
| !! | TTTTCAGGAAATGAAGCTGG+AGG | + | chr3_1:86453188-86453207 | Msa0383540:intron | 40.0% |
| TAAGTTTAACGTGAGTCCAG+TGG | + | chr3_1:86453326-86453345 | Msa0383540:CDS | 40.0% | |
| GATTCCCTTCATTGCTATCA+GGG | + | chr3_1:86453392-86453411 | Msa0383540:CDS | 40.0% | |
| TATCAGGGCTCTTTCTGATT+TGG | + | chr3_1:86453407-86453426 | Msa0383540:CDS | 40.0% | |
| TCTAAGGGTAACGTGTCATC+AGG | - | chr3_1:86452717-86452736 | None:intergenic | 45.0% | |
| GGAGATTACACAAGGGAAGT+AGG | + | chr3_1:86452744-86452763 | Msa0383540:CDS | 45.0% | |
| TTGTTCAGGAATGCCACCAA+CGG | - | chr3_1:86452868-86452887 | None:intergenic | 45.0% | |
| ! | TTGGTGGCATTCCTGAACAA+AGG | + | chr3_1:86452868-86452887 | Msa0383540:CDS | 45.0% |
| AGAGCATGTTGCCTTTGTTC+AGG | - | chr3_1:86452882-86452901 | None:intergenic | 45.0% | |
| GGTAGTACTTGGAATCAACG+GGG | - | chr3_1:86452911-86452930 | None:intergenic | 45.0% | |
| ATGCTTGACAACGACACCAA+AGG | + | chr3_1:86453230-86453249 | Msa0383540:CDS | 45.0% | |
| CTGTCTACAAGCACAACCTT+TGG | - | chr3_1:86453249-86453268 | None:intergenic | 45.0% | |
| AAGGTTGTGCTTGTAGACAG+AGG | + | chr3_1:86453249-86453268 | Msa0383540:CDS | 45.0% | |
| TAGACAGAGGAACAAGTGCA+GGG | + | chr3_1:86453262-86453281 | Msa0383540:CDS | 45.0% | |
| GGATTCCCTTCATTGCTATC+AGG | + | chr3_1:86453391-86453410 | Msa0383540:CDS | 45.0% | |
| AGAGCCCTGATAGCAATGAA+GGG | - | chr3_1:86453399-86453418 | None:intergenic | 45.0% | |
| AAGAGCCCTGATAGCAATGA+AGG | - | chr3_1:86453400-86453419 | None:intergenic | 45.0% | |
| TCTAAGGGTAACGTGTCATC+AGG | - | chr3_1:86452717-86452736 | None:intergenic | 45.0% | |
| GGAGATTACACAAGGGAAGT+AGG | + | chr3_1:86452744-86452763 | Msa0383540:CDS | 45.0% | |
| TTGTTCAGGAATGCCACCAA+CGG | - | chr3_1:86452868-86452887 | None:intergenic | 45.0% | |
| ! | TTGGTGGCATTCCTGAACAA+AGG | + | chr3_1:86452868-86452887 | Msa0383540:CDS | 45.0% |
| AGAGCATGTTGCCTTTGTTC+AGG | - | chr3_1:86452882-86452901 | None:intergenic | 45.0% | |
| GGTAGTACTTGGAATCAACG+GGG | - | chr3_1:86452911-86452930 | None:intergenic | 45.0% | |
| ATGCTTGACAACGACACCAA+AGG | + | chr3_1:86453230-86453249 | Msa0383540:CDS | 45.0% | |
| CTGTCTACAAGCACAACCTT+TGG | - | chr3_1:86453249-86453268 | None:intergenic | 45.0% | |
| AAGGTTGTGCTTGTAGACAG+AGG | + | chr3_1:86453249-86453268 | Msa0383540:CDS | 45.0% | |
| TAGACAGAGGAACAAGTGCA+GGG | + | chr3_1:86453262-86453281 | Msa0383540:CDS | 45.0% | |
| GGATTCCCTTCATTGCTATC+AGG | + | chr3_1:86453391-86453410 | Msa0383540:CDS | 45.0% | |
| AGAGCCCTGATAGCAATGAA+GGG | - | chr3_1:86453399-86453418 | None:intergenic | 45.0% | |
| AAGAGCCCTGATAGCAATGA+AGG | - | chr3_1:86453400-86453419 | None:intergenic | 45.0% | |
| ! | TATGTGCAGAGGTATGGGCA+AGG | + | chr3_1:86452690-86452709 | Msa0383540:CDS | 50.0% |
| ! | ATGTGCAGAGGTATGGGCAA+GGG | + | chr3_1:86452691-86452710 | Msa0383540:CDS | 50.0% |
| CGGGGAAAATCTCTTCTGGT+TGG | - | chr3_1:86452848-86452867 | None:intergenic | 50.0% | |
| CCAACGGGGAAAATCTCTTC+TGG | - | chr3_1:86452852-86452871 | None:intergenic | 50.0% | |
| ! | CCAGAAGAGATTTTCCCCGT+TGG | + | chr3_1:86452849-86452868 | Msa0383540:CDS | 50.0% |
| ! | GAAGAGATTTTCCCCGTTGG+TGG | + | chr3_1:86452852-86452871 | Msa0383540:CDS | 50.0% |
| TGTTCAGGAATGCCACCAAC+GGG | - | chr3_1:86452867-86452886 | None:intergenic | 50.0% | |
| GTAGACAGAGGAACAAGTGC+AGG | + | chr3_1:86453261-86453280 | Msa0383540:CDS | 50.0% | |
| TAACGTGAGTCCAGTGGACA+TGG | + | chr3_1:86453332-86453351 | Msa0383540:CDS | 50.0% | |
| GATGCACTTTCCATGTCCAC+TGG | - | chr3_1:86453345-86453364 | None:intergenic | 50.0% | |
| ! | GGACATGGAAAGTGCATCAG+TGG | + | chr3_1:86453347-86453366 | Msa0383540:CDS | 50.0% |
| !! | AGGGCTCTTTCTGATTTGGC+TGG | + | chr3_1:86453411-86453430 | Msa0383540:CDS | 50.0% |
| !! | GCTCTTTCTGATTTGGCTGG+CGG | + | chr3_1:86453414-86453433 | Msa0383540:CDS | 50.0% |
| !! | TGAGAAGGTATCAGCCTCGT+TGG | - | chr3_1:86453454-86453473 | None:intergenic | 50.0% |
| CACAGCAACAGAGTTAGTGG+CGG | - | chr3_1:86453484-86453503 | None:intergenic | 50.0% | |
| GACCACAGCAACAGAGTTAG+TGG | - | chr3_1:86453487-86453506 | None:intergenic | 50.0% | |
| TGTCATCACACCACTCCAAG+TGG | + | chr3_1:86453526-86453545 | Msa0383540:CDS | 50.0% | |
| ! | TATGTGCAGAGGTATGGGCA+AGG | + | chr3_1:86452690-86452709 | Msa0383540:CDS | 50.0% |
| ! | ATGTGCAGAGGTATGGGCAA+GGG | + | chr3_1:86452691-86452710 | Msa0383540:CDS | 50.0% |
| CGGGGAAAATCTCTTCTGGT+TGG | - | chr3_1:86452848-86452867 | None:intergenic | 50.0% | |
| CCAACGGGGAAAATCTCTTC+TGG | - | chr3_1:86452852-86452871 | None:intergenic | 50.0% | |
| ! | CCAGAAGAGATTTTCCCCGT+TGG | + | chr3_1:86452849-86452868 | Msa0383540:CDS | 50.0% |
| ! | GAAGAGATTTTCCCCGTTGG+TGG | + | chr3_1:86452852-86452871 | Msa0383540:CDS | 50.0% |
| TGTTCAGGAATGCCACCAAC+GGG | - | chr3_1:86452867-86452886 | None:intergenic | 50.0% | |
| GTAGACAGAGGAACAAGTGC+AGG | + | chr3_1:86453261-86453280 | Msa0383540:CDS | 50.0% | |
| TAACGTGAGTCCAGTGGACA+TGG | + | chr3_1:86453332-86453351 | Msa0383540:CDS | 50.0% | |
| GATGCACTTTCCATGTCCAC+TGG | - | chr3_1:86453345-86453364 | None:intergenic | 50.0% | |
| ! | GGACATGGAAAGTGCATCAG+TGG | + | chr3_1:86453347-86453366 | Msa0383540:CDS | 50.0% |
| !! | AGGGCTCTTTCTGATTTGGC+TGG | + | chr3_1:86453411-86453430 | Msa0383540:CDS | 50.0% |
| !! | GCTCTTTCTGATTTGGCTGG+CGG | + | chr3_1:86453414-86453433 | Msa0383540:CDS | 50.0% |
| !! | TGAGAAGGTATCAGCCTCGT+TGG | - | chr3_1:86453454-86453473 | None:intergenic | 50.0% |
| CACAGCAACAGAGTTAGTGG+CGG | - | chr3_1:86453484-86453503 | None:intergenic | 50.0% | |
| GACCACAGCAACAGAGTTAG+TGG | - | chr3_1:86453487-86453506 | None:intergenic | 50.0% | |
| TGTCATCACACCACTCCAAG+TGG | + | chr3_1:86453526-86453545 | Msa0383540:CDS | 50.0% | |
| GTTCAGGAATGCCACCAACG+GGG | - | chr3_1:86452866-86452885 | None:intergenic | 55.0% | |
| !! | CTTTCTGATTTGGCTGGCGG+CGG | + | chr3_1:86453417-86453436 | Msa0383540:CDS | 55.0% |
| GGCTGATACCTTCTCACCAC+TGG | + | chr3_1:86453458-86453477 | Msa0383540:CDS | 55.0% | |
| CGCCACTAACTCTGTTGCTG+TGG | + | chr3_1:86453482-86453501 | Msa0383540:CDS | 55.0% | |
| GTTCAGGAATGCCACCAACG+GGG | - | chr3_1:86452866-86452885 | None:intergenic | 55.0% | |
| !! | CTTTCTGATTTGGCTGGCGG+CGG | + | chr3_1:86453417-86453436 | Msa0383540:CDS | 55.0% |
| GGCTGATACCTTCTCACCAC+TGG | + | chr3_1:86453458-86453477 | Msa0383540:CDS | 55.0% | |
| CGCCACTAACTCTGTTGCTG+TGG | + | chr3_1:86453482-86453501 | Msa0383540:CDS | 55.0% | |
| ACAGAGTTAGTGGCGGCCAG+TGG | - | chr3_1:86453477-86453496 | None:intergenic | 60.0% | |
| ACAGAGTTAGTGGCGGCCAG+TGG | - | chr3_1:86453477-86453496 | None:intergenic | 60.0% | |
| AGTGGCGGCCAGTGGTGAGA+AGG | - | chr3_1:86453469-86453488 | None:intergenic | 65.0% | |
| AGTGGCGGCCAGTGGTGAGA+AGG | - | chr3_1:86453469-86453488 | None:intergenic | 65.0% | |
| TTTGGCTGGCGGCGGCACTG+CGG | + | chr3_1:86453425-86453444 | Msa0383540:CDS | 70.0% | |
| CGGCACTGCGGAGTCCAACG+AGG | + | chr3_1:86453437-86453456 | Msa0383540:CDS | 70.0% | |
| TTTGGCTGGCGGCGGCACTG+CGG | + | chr3_1:86453425-86453444 | Msa0383540:CDS | 70.0% | |
| CGGCACTGCGGAGTCCAACG+AGG | + | chr3_1:86453437-86453456 | Msa0383540:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 86452678 | 86453551 | 86452678 | ID=Msa0383540;Name=Msa0383540 |
| chr3_1 | mRNA | 86452678 | 86453551 | 86452678 | ID=Msa0383540-mRNA-1;Parent=Msa0383540;Name=Msa0383540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|209 |
| chr3_1 | exon | 86452678 | 86452950 | 86452678 | ID=Msa0383540-mRNA-1:exon:22836;Parent=Msa0383540-mRNA-1 |
| chr3_1 | exon | 86453195 | 86453551 | 86453195 | ID=Msa0383540-mRNA-1:exon:22837;Parent=Msa0383540-mRNA-1 |
| chr3_1 | CDS | 86452678 | 86452950 | 86452678 | ID=Msa0383540-mRNA-1:cds;Parent=Msa0383540-mRNA-1 |
| chr3_1 | CDS | 86453195 | 86453551 | 86453195 | ID=Msa0383540-mRNA-1:cds;Parent=Msa0383540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
