AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0521810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521810 MtrunA17_Chr3g0140051 91.877 357 27 1 1 355 1 357 0.0 678
Msa0521810 MtrunA17_Chr3g0140061 92.068 353 26 1 1 351 1 353 0.0 672
Msa0521810 MtrunA17_Chr6g0486081 52.866 314 141 3 37 348 28 336 4.85e-124 360
Msa0521810 MtrunA17_Chr6g0486101 51.911 314 139 3 37 348 29 332 4.02e-119 347
Msa0521810 MtrunA17_Chr6g0486091 49.682 314 146 3 37 348 30 333 5.31e-113 332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0521810 AT4G28940.1 58.125 320 125 3 37 354 32 344 3.56e-138 397
Msa0521810 AT4G28940.2 59.459 259 98 2 96 354 1 252 4.21e-112 327
Msa0521810 AT4G24340.1 35.549 346 196 6 11 348 9 335 2.93e-67 215
Msa0521810 AT4G24350.1 35.294 340 202 6 11 348 10 333 5.04e-66 212
Msa0521810 AT4G24350.2 33.446 296 181 5 11 304 10 291 1.06e-52 176
Msa0521810 AT4G24350.3 37.395 238 133 5 111 348 1 222 5.79e-49 164
Msa0521810 AT4G24350.4 35.468 203 117 4 102 304 9 197 3.22e-38 135

Find 100 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACAAAGAGGGTCCTTATT+TGG 0.081653 3_4:+74760809 Msa0521810:CDS
CACAACTCACGAATGCATTT+TGG 0.147904 3_4:-74760749 None:intergenic
ATGTTGCTATTCCACATTAT+TGG 0.227186 3_4:+74761452 Msa0521810:CDS
AATATAATTAAATATTAAAA+AGG 0.230454 3_4:+74764784 Msa0521810:three_prime_UTR
GTAAACAACAACTTTGTTCT+TGG 0.232547 3_4:+74764668 Msa0521810:three_prime_UTR
TTGTTCTTGGTTTGGTTGTC+TGG 0.248126 3_4:+74764681 Msa0521810:three_prime_UTR
CTTCCTATATTGCGTGTGTC+TGG 0.268657 3_4:+74760649 Msa0521810:five_prime_UTR
GGATTCCCTTCATTGCTATC+AGG 0.272090 3_4:+74764451 Msa0521810:CDS
AACAAAGGCAACATGCTCTT+TGG 0.272171 3_4:+74763943 Msa0521810:CDS
TGTTGCTATTCCACATTATT+GGG 0.272480 3_4:+74761453 Msa0521810:CDS
GGTATGATTAAACCCAAATA+AGG 0.283272 3_4:-74760822 None:intergenic
GGGTTAAGTTCAAAAGAATT+TGG 0.307615 3_4:-74760843 None:intergenic
AACAAAGAGGGTCCTTATTT+GGG 0.323637 3_4:+74760810 Msa0521810:CDS
TATCAGGGCTCTTTCTGATT+TGG 0.324485 3_4:+74764467 Msa0521810:CDS
CTCATTTGGCACTTTGGAGC+TGG 0.328354 3_4:+74761476 Msa0521810:CDS
TCCACATTATTGGGCTCATT+TGG 0.331452 3_4:+74761462 Msa0521810:CDS
CAACAACTTTGTTCTTGGTT+TGG 0.342838 3_4:+74764673 Msa0521810:three_prime_UTR
AGAGCATGTTGCCTTTGTTC+AGG 0.348607 3_4:-74763939 None:intergenic
ACAACCAACTCAACAATCTA+TGG 0.372643 3_4:+74763880 Msa0521810:CDS
GTTGTTCATTACGGGATTGC+TGG 0.372697 3_4:+74761400 Msa0521810:CDS
TAGATGGAGTTGTTCATTAC+GGG 0.375885 3_4:+74761392 Msa0521810:CDS
CCAACGGGGAAAATCTCTTC+TGG 0.376793 3_4:-74763909 None:intergenic
GCATATCATTGCACTAATTA+CGG 0.380260 3_4:-74764637 None:intergenic
CCCGTCATGACTAGTATAAC+TGG 0.382128 3_4:-74761210 None:intergenic
AGGTAGTACTTGGAATCAAC+GGG 0.405005 3_4:-74763969 None:intergenic
ATTGGGCTCATTTGGCACTT+TGG 0.416383 3_4:+74761470 Msa0521810:CDS
CTGTCTACAAGCACAACCTT+TGG 0.418437 3_4:-74764306 None:intergenic
TGTTCAGGAATGCCACCAAC+GGG 0.418889 3_4:-74763924 None:intergenic
AGGGCTCTTTCTGATTTGGC+TGG 0.421164 3_4:+74764471 Msa0521810:CDS
GTAGATGGAGTTGTTCATTA+CGG 0.424060 3_4:+74761391 Msa0521810:CDS
ACAAAGGCAACATGCTCTTT+GGG 0.425980 3_4:+74763944 Msa0521810:CDS
ATTGTATATGTGCAGAGGTA+TGG 0.431241 3_4:+74763744 Msa0521810:intron
GAAGGAAGGAGATTTCGTTT+TGG 0.431427 3_4:+74761171 Msa0521810:intron
CTTTCTGATTTGGCTGGCGG+CGG 0.432701 3_4:+74764477 Msa0521810:CDS
CTCTTATATGCTTGCAACAA+AGG 0.444049 3_4:+74764430 Msa0521810:CDS
TTCCTATATTGCGTGTGTCT+GGG 0.450123 3_4:+74760650 Msa0521810:five_prime_UTR
CACCCAGACACACGCAATAT+AGG 0.451282 3_4:-74760652 None:intergenic
TTTGGCAATAAGGTAGTACT+TGG 0.451990 3_4:-74763979 None:intergenic
GCAAACCCTTCCTTGCATAT+CGG 0.458109 3_4:+74761427 Msa0521810:CDS
TCTAAGGGTAACGTGTCATC+AGG 0.462269 3_4:-74763774 None:intergenic
GTTAAACTTATTGTAGATGA+AGG 0.469473 3_4:-74764373 None:intergenic
AACCCTCTTCTTCAAAATCC+AGG 0.472844 3_4:+74760861 Msa0521810:CDS
TTTGGCACTTTGGAGCTGGC+AGG 0.483139 3_4:+74761480 Msa0521810:CDS
GGTACCATAGATTGTTGAGT+TGG 0.488750 3_4:-74763884 None:intergenic
GACCACAGCAACAGAGTTAG+TGG 0.492352 3_4:-74764544 None:intergenic
GGAGATTACACAAGGGAAGT+AGG 0.493178 3_4:+74763804 Msa0521810:CDS
TTGTATATGTGCAGAGGTAT+GGG 0.494546 3_4:+74763745 Msa0521810:intron
AAGAGCCCTGATAGCAATGA+AGG 0.499791 3_4:-74764457 None:intergenic
TTTACATCAAACTTAAGTGC+TGG 0.499968 3_4:+74763846 Msa0521810:CDS
TGTTTCTTGTGGCATTTATG+TGG 0.501987 3_4:+74760718 Msa0521810:CDS
TATAACTGGTTTGTCGCCAA+TGG 0.510741 3_4:-74761196 None:intergenic
AGTCTTGTTCATGTTTCTTG+TGG 0.512605 3_4:+74760707 Msa0521810:CDS
AAGGTAGTACTTGGAATCAA+CGG 0.527662 3_4:-74763970 None:intergenic
GGCTGATACCTTCTCACCAC+TGG 0.530809 3_4:+74764518 Msa0521810:CDS
GAGATTACACAAGGGAAGTA+GGG 0.535301 3_4:+74763805 Msa0521810:CDS
GATGCACTTTCCATGTCCAC+TGG 0.544627 3_4:-74764402 None:intergenic
GTAGACAGAGGAACAAGTGC+AGG 0.547219 3_4:+74764321 Msa0521810:CDS
GATTCCCTTCATTGCTATCA+GGG 0.551884 3_4:+74764452 Msa0521810:CDS
TTGTCACTAGCAGTATAGCC+TGG 0.553691 3_4:-74760879 None:intergenic
TAACGTGAGTCCAGTGGACA+TGG 0.555563 3_4:+74764392 Msa0521810:CDS
ACCAGTTATACTAGTCATGA+CGG 0.559335 3_4:+74761209 Msa0521810:CDS
TTGTTCAGGAATGCCACCAA+CGG 0.573621 3_4:-74763925 None:intergenic
GCCAAATGAGCCCAATAATG+TGG 0.579248 3_4:-74761463 None:intergenic
ACATCTCCGATATGCAAGGA+AGG 0.579860 3_4:-74761433 None:intergenic
TGAGAAGGTATCAGCCTCGT+TGG 0.580666 3_4:-74764511 None:intergenic
AGTGGCGGCCAGTGGTGAGA+AGG 0.585903 3_4:-74764526 None:intergenic
CGCCACTAACTCTGTTGCTG+TGG 0.586135 3_4:+74764542 Msa0521810:CDS
GGACATGGAAAGTGCATCAG+TGG 0.586546 3_4:+74764407 Msa0521810:CDS
AATGAAGGACCCAAATAGGT+TGG 0.590279 3_4:-74760604 None:intergenic
CGGGGAAAATCTCTTCTGGT+TGG 0.595557 3_4:-74763905 None:intergenic
AATTGCTAAAATCAACAAAG+AGG 0.598241 3_4:+74760797 Msa0521810:CDS
TCATAACATAGTTCACCACT+TGG 0.603986 3_4:-74764601 None:intergenic
CTTTAACACCAAAATTACAA+AGG 0.606600 3_4:+74760772 Msa0521810:CDS
GCTCTTTCTGATTTGGCTGG+CGG 0.606832 3_4:+74764474 Msa0521810:CDS
ATTGCTAAAATCAACAAAGA+GGG 0.607365 3_4:+74760798 Msa0521810:CDS
CCAGTTATACTAGTCATGAC+GGG 0.608599 3_4:+74761210 Msa0521810:CDS
AGCAACATCTCCGATATGCA+AGG 0.618530 3_4:-74761437 None:intergenic
TATAGGAAGACAACAACTGT+GGG 0.626859 3_4:-74760635 None:intergenic
TTTGGCTGGCGGCGGCACTG+CGG 0.630853 3_4:+74764485 Msa0521810:CDS
ATGTGCAGAGGTATGGGCAA+GGG 0.632644 3_4:+74763751 Msa0521810:intron
ACATAGTTCACCACTTGGAG+TGG 0.638822 3_4:-74764596 None:intergenic
ACAGAGTTAGTGGCGGCCAG+TGG 0.641871 3_4:-74764534 None:intergenic
TATGTGCAGAGGTATGGGCA+AGG 0.643104 3_4:+74763750 Msa0521810:intron
ACGTTACCCTTAGAAAACAA+TGG 0.644025 3_4:+74763783 Msa0521810:CDS
ATGCTTGACAACGACACCAA+AGG 0.644624 3_4:+74764290 Msa0521810:CDS
AGAGCCCTGATAGCAATGAA+GGG 0.645404 3_4:-74764456 None:intergenic
TTGGTGGCATTCCTGAACAA+AGG 0.647085 3_4:+74763928 Msa0521810:CDS
TGTCATCACACCACTCCAAG+TGG 0.651383 3_4:+74764586 Msa0521810:CDS
CATCTCCGATATGCAAGGAA+GGG 0.651532 3_4:-74761432 None:intergenic
TAAGTTTAACGTGAGTCCAG+TGG 0.659074 3_4:+74764386 Msa0521810:CDS
AGTCATGACGGGATTGAGTG+TGG 0.668616 3_4:+74761221 Msa0521810:CDS
AAAACAATGGAGATTACACA+AGG 0.670651 3_4:+74763796 Msa0521810:CDS
TAGACAGAGGAACAAGTGCA+GGG 0.675462 3_4:+74764322 Msa0521810:CDS
CGGCACTGCGGAGTCCAACG+AGG 0.679929 3_4:+74764497 Msa0521810:CDS
CACAGCAACAGAGTTAGTGG+CGG 0.702748 3_4:-74764541 None:intergenic
AAGGTTGTGCTTGTAGACAG+AGG 0.704702 3_4:+74764309 Msa0521810:CDS
AAACAATGGAGATTACACAA+GGG 0.709853 3_4:+74763797 Msa0521810:CDS
ATATAGGAAGACAACAACTG+TGG 0.713840 3_4:-74760636 None:intergenic
GTTCAGGAATGCCACCAACG+GGG 0.730088 3_4:-74763923 None:intergenic
GGTAGTACTTGGAATCAACG+GGG 0.836087 3_4:-74763968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATTAAATATTAAAA+AGG + chr3_4:74764784-74764803 Msa0521810:three_prime_UTR 0.0%
!!! ATATGATATTATGATTTTTT+TGG - chr3_4:74761595-74761614 None:intergenic 10.0%
!!! TAAAAACACAATAAATTTTA+AGG + chr3_4:74762076-74762095 Msa0521810:intron 10.0%
!!! TAAAAACACAATAAATTTTA+AGG + chr3_4:74762076-74762095 Msa0521810:intron 10.0%
!!! ATTTTAGATATTACTTAAAA+AGG + chr3_4:74764757-74764776 Msa0521810:three_prime_UTR 10.0%
!!! AATTTTCCTCTTTTTTTTTA+TGG + chr3_4:74761140-74761159 Msa0521810:intron 15.0%
!! ATAAATAATAATTATTGTGG+TGG - chr3_4:74761515-74761534 None:intergenic 15.0%
!!! TTGAATCAAAATTTCTTTTA+TGG + chr3_4:74761627-74761646 Msa0521810:intron 15.0%
!! GTAGTTGTTAATTAATTTAA+AGG - chr3_4:74762705-74762724 None:intergenic 15.0%
!!! TTAACAACTACATATTTTTT+TGG + chr3_4:74762714-74762733 Msa0521810:intron 15.0%
!!! TTTTCTAAGTTAAAAATAGA+CGG - chr3_4:74763073-74763092 None:intergenic 15.0%
!!! AATTGTTGACTTTTTTTATT+AGG + chr3_4:74763285-74763304 Msa0521810:intron 15.0%
!!! TACATTTATATATTTTTGAG+AGG + chr3_4:74764108-74764127 Msa0521810:intron 15.0%
!!! TGACTTTAAAAAAAAAAGAA+GGG + chr3_4:74764734-74764753 Msa0521810:three_prime_UTR 15.0%
!!! CTTTTATAGAGAATAAAATG+AGG - chr3_4:74760584-74760603 None:intergenic 20.0%
!! TCACATGTATAATTTAATCT+TGG - chr3_4:74760955-74760974 None:intergenic 20.0%
!! TGAAATTAATTAACTTTGCA+AGG + chr3_4:74761078-74761097 Msa0521810:intron 20.0%
!! TATTAGCCATAAAAAAAAAG+AGG - chr3_4:74761149-74761168 None:intergenic 20.0%
!! AAAAAAAAAACAAAGCATGA+AGG - chr3_4:74761765-74761784 None:intergenic 20.0%
!!! ATGCTTTGTTTTTTTTTTGA+AGG + chr3_4:74761767-74761786 Msa0521810:intron 20.0%
!!! TGTTGACTATAAAATATTGT+AGG + chr3_4:74761871-74761890 Msa0521810:intron 20.0%
!! GTTGACTATAAAATATTGTA+GGG + chr3_4:74761872-74761891 Msa0521810:intron 20.0%
!! TGAAAAAAATAGTTCAACTA+CGG - chr3_4:74762045-74762064 None:intergenic 20.0%
!!! TTTTTTTTTGATCAATCAAG+TGG + chr3_4:74762134-74762153 Msa0521810:intron 20.0%
!! AAGGAAAATATTTCTTATTC+AGG - chr3_4:74762686-74762705 None:intergenic 20.0%
!! TTTCTAAGTTAAAAATAGAC+GGG - chr3_4:74763072-74763091 None:intergenic 20.0%
!!! ATGGAAAATGACAAATTTTT+GGG - chr3_4:74763138-74763157 None:intergenic 20.0%
!! TTAGGCTAATTAATATGATT+AGG + chr3_4:74763303-74763322 Msa0521810:intron 20.0%
!! TAGGCTAATTAATATGATTA+GGG + chr3_4:74763304-74763323 Msa0521810:intron 20.0%
!! TAAAGTTATTAATTAAGCGT+TGG - chr3_4:74763335-74763354 None:intergenic 20.0%
!! TAATAACATGCATAACAAAA+AGG + chr3_4:74763386-74763405 Msa0521810:intron 20.0%
!!! AGAATTTTTCAAGAAATAGT+TGG + chr3_4:74763440-74763459 Msa0521810:intron 20.0%
!!! AATAGTTGGCAAATTTTAAT+TGG + chr3_4:74763454-74763473 Msa0521810:intron 20.0%
!!! AGGAAATTGTTTCTATAAAA+TGG - chr3_4:74763621-74763640 None:intergenic 20.0%
!!! TTTTACAAGAATTGATTTTG+AGG - chr3_4:74763641-74763660 None:intergenic 20.0%
!! TACCATAAATATATATGAGT+AGG + chr3_4:74764046-74764065 Msa0521810:intron 20.0%
!! ACCATAAATATATATGAGTA+GGG + chr3_4:74764047-74764066 Msa0521810:intron 20.0%
!!! TATTGTATCCATTTTTTTTG+AGG + chr3_4:74764136-74764155 Msa0521810:intron 20.0%
!!! ATTGTATCCATTTTTTTTGA+GGG + chr3_4:74764137-74764156 Msa0521810:intron 20.0%
!! ATTATGTGGTTATGTTTATT+CGG + chr3_4:74764219-74764238 Msa0521810:intron 20.0%
!!! GTGACTTTAAAAAAAAAAGA+AGG + chr3_4:74764733-74764752 Msa0521810:three_prime_UTR 20.0%
! CTTTAACACCAAAATTACAA+AGG + chr3_4:74760772-74760791 Msa0521810:CDS 25.0%
!! GCAATTTTCCTTTGTAATTT+TGG - chr3_4:74760783-74760802 None:intergenic 25.0%
! AATTGCTAAAATCAACAAAG+AGG + chr3_4:74760797-74760816 Msa0521810:CDS 25.0%
! ATTGCTAAAATCAACAAAGA+GGG + chr3_4:74760798-74760817 Msa0521810:CDS 25.0%
!! TAATCTTGGTCCTTTTAAAT+GGG - chr3_4:74760941-74760960 None:intergenic 25.0%
!! TTAATCTTGGTCCTTTTAAA+TGG - chr3_4:74760942-74760961 None:intergenic 25.0%
! GCTCTAGTTAAAATAAACTT+TGG - chr3_4:74760983-74761002 None:intergenic 25.0%
! TCAGTGAAGATTTGTAAATT+AGG - chr3_4:74761029-74761048 None:intergenic 25.0%
!!! TCATTGTTATTTTCTGTTGA+TGG - chr3_4:74761061-74761080 None:intergenic 25.0%
!!! TTTTTTATGGCTAATAACGA+AGG + chr3_4:74761153-74761172 Msa0521810:intron 25.0%
!!! TTAAGCTTTTTCAAAGTAGA+TGG + chr3_4:74761376-74761395 Msa0521810:CDS 25.0%
! GAAAAAAATAGTTCAACTAC+GGG - chr3_4:74762044-74762063 None:intergenic 25.0%
! AAAATCAACCACTTGATTAA+AGG - chr3_4:74762112-74762131 None:intergenic 25.0%
! AATCAAGTGGTGAATTTAAA+TGG + chr3_4:74762147-74762166 Msa0521810:intron 25.0%
! AAAATCAACCACTTGATTAA+AGG - chr3_4:74762112-74762131 None:intergenic 25.0%
!!! TTTTTTTGTGATCAATCAAG+TGG + chr3_4:74762257-74762276 Msa0521810:intron 25.0%
! AATCAAGTGGTGAATTTAAA+TGG + chr3_4:74762147-74762166 Msa0521810:intron 25.0%
! CTCTGTCAAAAAAAAAATTG+AGG + chr3_4:74762636-74762655 Msa0521810:intron 25.0%
!! ACTTCATCTATTTCTTGTAA+TGG + chr3_4:74762750-74762769 Msa0521810:intron 25.0%
! TAACAAAATTACTAATCGCA+TGG + chr3_4:74763099-74763118 Msa0521810:intron 25.0%
!! CATGGAAAATGACAAATTTT+TGG - chr3_4:74763139-74763158 None:intergenic 25.0%
! TAATTAATATGATTAGGGCT+GGG + chr3_4:74763309-74763328 Msa0521810:intron 25.0%
! AGATTAACGAATTGCATATT+TGG + chr3_4:74763689-74763708 Msa0521810:intron 25.0%
!! TAATCTCCATTGTTTTCTAA+GGG - chr3_4:74763792-74763811 None:intergenic 25.0%
!!! ATTACATACCTCTAGTTTTT+TGG - chr3_4:74764000-74764019 None:intergenic 25.0%
!! CTAGAGGTATGTAATTAATT+AGG + chr3_4:74764005-74764024 Msa0521810:intron 25.0%
! ACCCTACTCATATATATTTA+TGG - chr3_4:74764051-74764070 None:intergenic 25.0%
! ACTACATGATACAAATTATG+TGG + chr3_4:74764205-74764224 Msa0521810:intron 25.0%
! GTTAAACTTATTGTAGATGA+AGG - chr3_4:74764376-74764395 None:intergenic 25.0%
TCTATAAAAGCCAACCTATT+TGG + chr3_4:74760594-74760613 Msa0521810:intron 30.0%
CTATAAAAGCCAACCTATTT+GGG + chr3_4:74760595-74760614 Msa0521810:intron 30.0%
GGTATGATTAAACCCAAATA+AGG - chr3_4:74760825-74760844 None:intergenic 30.0%
GGGTTAAGTTCAAAAGAATT+TGG - chr3_4:74760846-74760865 None:intergenic 30.0%
GTGAAGATTTGTAAATTAGG+TGG - chr3_4:74761026-74761045 None:intergenic 30.0%
! ATGTTGCTATTCCACATTAT+TGG + chr3_4:74761452-74761471 Msa0521810:CDS 30.0%
! TGTTGCTATTCCACATTATT+GGG + chr3_4:74761453-74761472 Msa0521810:CDS 30.0%
TAAAAAGCAATGAATGTGCA+TGG + chr3_4:74761709-74761728 Msa0521810:intron 30.0%
! AAAGGTATGTATGATTGCAA+CGG - chr3_4:74762016-74762035 None:intergenic 30.0%
TTATGTCACCTTTAATCAAG+TGG + chr3_4:74762101-74762120 Msa0521810:intron 30.0%
TTATGTCACCTTTAATCAAG+TGG + chr3_4:74762101-74762120 Msa0521810:intron 30.0%
CAAACACAATTAACAAGTTG+AGG + chr3_4:74762606-74762625 Msa0521810:intron 30.0%
! TCAATTTGATGTTGTTGACT+TGG + chr3_4:74762818-74762837 Msa0521810:intron 30.0%
!! ATTTTAGTGTGTTCCTTTCA+AGG + chr3_4:74762844-74762863 Msa0521810:intron 30.0%
! CTTTTCTGTGTCAATTTTGA+TGG + chr3_4:74762881-74762900 Msa0521810:intron 30.0%
ATCTATCAAATTCATGTGCA+TGG + chr3_4:74762930-74762949 Msa0521810:intron 30.0%
TCTATCAAATTCATGTGCAT+GGG + chr3_4:74762931-74762950 Msa0521810:intron 30.0%
!!! TCTCAGACTTTGTTTTTTGA+AGG + chr3_4:74763010-74763029 Msa0521810:intron 30.0%
!!! CTCAGACTTTGTTTTTTGAA+GGG + chr3_4:74763011-74763030 Msa0521810:intron 30.0%
AAGAAAAACAAAAGTCTGAG+AGG - chr3_4:74763041-74763060 None:intergenic 30.0%
TAAAATTAACCTCAACTGAG+TGG + chr3_4:74763215-74763234 Msa0521810:intron 30.0%
CTAATTAATATGATTAGGGC+TGG + chr3_4:74763308-74763327 Msa0521810:intron 30.0%
CGAAGTTTGTAATAATCTGA+TGG + chr3_4:74763712-74763731 Msa0521810:intron 30.0%
! GTAATCTCCATTGTTTTCTA+AGG - chr3_4:74763793-74763812 None:intergenic 30.0%
AAAACAATGGAGATTACACA+AGG + chr3_4:74763796-74763815 Msa0521810:CDS 30.0%
AAACAATGGAGATTACACAA+GGG + chr3_4:74763797-74763816 Msa0521810:CDS 30.0%
TTTACATCAAACTTAAGTGC+TGG + chr3_4:74763846-74763865 Msa0521810:CDS 30.0%
AATTGCTCCCTCAAAAAAAA+TGG - chr3_4:74764147-74764166 None:intergenic 30.0%
!! TATTTTTCAGCAAATGAAGC+TGG + chr3_4:74764245-74764264 Msa0521810:intron 30.0%
GCATATCATTGCACTAATTA+CGG - chr3_4:74764640-74764659 None:intergenic 30.0%
GTAAACAACAACTTTGTTCT+TGG + chr3_4:74764668-74764687 Msa0521810:three_prime_UTR 30.0%
TATAGGAAGACAACAACTGT+GGG - chr3_4:74760638-74760657 None:intergenic 35.0%
ATATAGGAAGACAACAACTG+TGG - chr3_4:74760639-74760658 None:intergenic 35.0%
TGTCTGGGTGTAGATAAAAA+TGG + chr3_4:74760665-74760684 Msa0521810:exon 35.0%
ATAAAAATGGCAGCTACTCA+TGG + chr3_4:74760678-74760697 Msa0521810:exon 35.0%
TAAAAATGGCAGCTACTCAT+GGG + chr3_4:74760679-74760698 Msa0521810:exon 35.0%
!! AGTCTTGTTCATGTTTCTTG+TGG + chr3_4:74760707-74760726 Msa0521810:CDS 35.0%
TGTTTCTTGTGGCATTTATG+TGG + chr3_4:74760718-74760737 Msa0521810:CDS 35.0%
! ACAACTCACGAATGCATTTT+GGG - chr3_4:74760751-74760770 None:intergenic 35.0%
! AACAAAGAGGGTCCTTATTT+GGG + chr3_4:74760810-74760829 Msa0521810:CDS 35.0%
! GACAACATCATAGATTTTGC+AGG + chr3_4:74760897-74760916 Msa0521810:CDS 35.0%
TGCGTCTATTCCCATTTAAA+AGG + chr3_4:74760928-74760947 Msa0521810:intron 35.0%
TTATGGCTAATAACGAAGGA+AGG + chr3_4:74761157-74761176 Msa0521810:intron 35.0%
!! AGATTTCGTTTTGGATCCAT+TGG + chr3_4:74761180-74761199 Msa0521810:CDS 35.0%
ACCAGTTATACTAGTCATGA+CGG + chr3_4:74761209-74761228 Msa0521810:CDS 35.0%
GTAGATGGAGTTGTTCATTA+CGG + chr3_4:74761391-74761410 Msa0521810:CDS 35.0%
TAGATGGAGTTGTTCATTAC+GGG + chr3_4:74761392-74761411 Msa0521810:CDS 35.0%
TCTCAGTTGCTAACTTTGTT+GGG - chr3_4:74762965-74762984 None:intergenic 35.0%
TTCTCAGTTGCTAACTTTGT+TGG - chr3_4:74762966-74762985 None:intergenic 35.0%
ATGTATCTGCACATGAGAAT+GGG + chr3_4:74763156-74763175 Msa0521810:intron 35.0%
! TACTCACGTCTCATTTGTTA+AGG + chr3_4:74763244-74763263 Msa0521810:intron 35.0%
! ACTCACGTCTCATTTGTTAA+GGG + chr3_4:74763245-74763264 Msa0521810:intron 35.0%
TATCAAGTCGAGTGTATGTT+AGG - chr3_4:74763670-74763689 None:intergenic 35.0%
TAACGATTGTATATGTGCAG+AGG + chr3_4:74763739-74763758 Msa0521810:intron 35.0%
ATTGTATATGTGCAGAGGTA+TGG + chr3_4:74763744-74763763 Msa0521810:intron 35.0%
! TTGTATATGTGCAGAGGTAT+GGG + chr3_4:74763745-74763764 Msa0521810:intron 35.0%
ACGTTACCCTTAGAAAACAA+TGG + chr3_4:74763783-74763802 Msa0521810:CDS 35.0%
ACAACCAACTCAACAATCTA+TGG + chr3_4:74763880-74763899 Msa0521810:CDS 35.0%
AAGGTAGTACTTGGAATCAA+CGG - chr3_4:74763973-74763992 None:intergenic 35.0%
TTTGGCAATAAGGTAGTACT+TGG - chr3_4:74763982-74764001 None:intergenic 35.0%
!!! CCTCTAGTTTTTTGGCAATA+AGG - chr3_4:74763992-74764011 None:intergenic 35.0%
CCTTATTGCCAAAAAACTAG+AGG + chr3_4:74763989-74764008 Msa0521810:CDS 35.0%
GGTATGTAATTAATTAGGCC+TGG + chr3_4:74764010-74764029 Msa0521810:intron 35.0%
TGGTATAGTAGTTTGAATCC+AGG - chr3_4:74764031-74764050 None:intergenic 35.0%
CTCTTATATGCTTGCAACAA+AGG + chr3_4:74764430-74764449 Msa0521810:CDS 35.0%
TCATAACATAGTTCACCACT+TGG - chr3_4:74764604-74764623 None:intergenic 35.0%
CAACAACTTTGTTCTTGGTT+TGG + chr3_4:74764673-74764692 Msa0521810:three_prime_UTR 35.0%
AATGAAGGACCCAAATAGGT+TGG - chr3_4:74760607-74760626 None:intergenic 40.0%
GAGTAATGAAGGACCCAAAT+AGG - chr3_4:74760611-74760630 None:intergenic 40.0%
CTGTGGGATTTGAGTAATGA+AGG - chr3_4:74760622-74760641 None:intergenic 40.0%
TTCCTATATTGCGTGTGTCT+GGG + chr3_4:74760650-74760669 Msa0521810:five_prime_UTR 40.0%
! CACAACTCACGAATGCATTT+TGG - chr3_4:74760752-74760771 None:intergenic 40.0%
CAACAAAGAGGGTCCTTATT+TGG + chr3_4:74760809-74760828 Msa0521810:CDS 40.0%
AACCCTCTTCTTCAAAATCC+AGG + chr3_4:74760861-74760880 Msa0521810:CDS 40.0%
!! AGCCTGGATTTTGAAGAAGA+GGG - chr3_4:74760866-74760885 None:intergenic 40.0%
!! TAGCCTGGATTTTGAAGAAG+AGG - chr3_4:74760867-74760886 None:intergenic 40.0%
! GAAGGAAGGAGATTTCGTTT+TGG + chr3_4:74761171-74761190 Msa0521810:intron 40.0%
!! TATAACTGGTTTGTCGCCAA+TGG - chr3_4:74761199-74761218 None:intergenic 40.0%
CCAGTTATACTAGTCATGAC+GGG + chr3_4:74761210-74761229 Msa0521810:CDS 40.0%
TCCACATTATTGGGCTCATT+TGG + chr3_4:74761462-74761481 Msa0521810:CDS 40.0%
!! TCATGCTTTGTTGTTGTCGA+CGG + chr3_4:74761792-74761811 Msa0521810:intron 40.0%
! TATTGTAGGGTCCTTTTCGA+AGG + chr3_4:74761885-74761904 Msa0521810:intron 40.0%
! ATTGTAGGGTCCTTTTCGAA+GGG + chr3_4:74761886-74761905 Msa0521810:intron 40.0%
TTACCAAACACCCTTCGAAA+AGG - chr3_4:74761899-74761918 None:intergenic 40.0%
CACCTGACTTTCAGAGAAAA+GGG - chr3_4:74762412-74762431 None:intergenic 40.0%
ATCGAACATGAGACCTTGAA+AGG - chr3_4:74762860-74762879 None:intergenic 40.0%
CATTCTCATGTGCAGATACA+TGG - chr3_4:74763157-74763176 None:intergenic 40.0%
CATGTATCTGCACATGAGAA+TGG + chr3_4:74763155-74763174 Msa0521810:intron 40.0%
TGTGGCTGAAAAATAGGAAG+TGG - chr3_4:74763493-74763512 None:intergenic 40.0%
CTATTTGCCACAATTCAAGG+AGG - chr3_4:74763516-74763535 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG - chr3_4:74763519-74763538 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG + chr3_4:74763527-74763546 Msa0521810:intron 40.0%
GAGATTACACAAGGGAAGTA+GGG + chr3_4:74763805-74763824 Msa0521810:CDS 40.0%
GGTACCATAGATTGTTGAGT+TGG - chr3_4:74763887-74763906 None:intergenic 40.0%
AACAAAGGCAACATGCTCTT+TGG + chr3_4:74763943-74763962 Msa0521810:CDS 40.0%
ACAAAGGCAACATGCTCTTT+GGG + chr3_4:74763944-74763963 Msa0521810:CDS 40.0%
AGGTAGTACTTGGAATCAAC+GGG - chr3_4:74763972-74763991 None:intergenic 40.0%
! TTTTCAGCAAATGAAGCTGG+AGG + chr3_4:74764248-74764267 Msa0521810:intron 40.0%
TAAGTTTAACGTGAGTCCAG+TGG + chr3_4:74764386-74764405 Msa0521810:CDS 40.0%
GATTCCCTTCATTGCTATCA+GGG + chr3_4:74764452-74764471 Msa0521810:CDS 40.0%
TATCAGGGCTCTTTCTGATT+TGG + chr3_4:74764467-74764486 Msa0521810:CDS 40.0%
!! TTGTTCTTGGTTTGGTTGTC+TGG + chr3_4:74764681-74764700 Msa0521810:three_prime_UTR 40.0%
CTTCCTATATTGCGTGTGTC+TGG + chr3_4:74760649-74760668 Msa0521810:five_prime_UTR 45.0%
TTGTCACTAGCAGTATAGCC+TGG - chr3_4:74760882-74760901 None:intergenic 45.0%
AGAGCTGCACCTAGTAAACA+AGG + chr3_4:74760998-74761017 Msa0521810:intron 45.0%
GAGCTGCACCTAGTAAACAA+GGG + chr3_4:74760999-74761018 Msa0521810:intron 45.0%
! TAGGTGGTCCCTTGTTTACT+AGG - chr3_4:74761010-74761029 None:intergenic 45.0%
CCCGTCATGACTAGTATAAC+TGG - chr3_4:74761213-74761232 None:intergenic 45.0%
GTTGTTCATTACGGGATTGC+TGG + chr3_4:74761400-74761419 Msa0521810:CDS 45.0%
GCAAACCCTTCCTTGCATAT+CGG + chr3_4:74761427-74761446 Msa0521810:CDS 45.0%
CATCTCCGATATGCAAGGAA+GGG - chr3_4:74761435-74761454 None:intergenic 45.0%
ACATCTCCGATATGCAAGGA+AGG - chr3_4:74761436-74761455 None:intergenic 45.0%
AGCAACATCTCCGATATGCA+AGG - chr3_4:74761440-74761459 None:intergenic 45.0%
GCCAAATGAGCCCAATAATG+TGG - chr3_4:74761466-74761485 None:intergenic 45.0%
ATTGGGCTCATTTGGCACTT+TGG + chr3_4:74761470-74761489 Msa0521810:CDS 45.0%
!! CACCCTTTTCTCTGAAAGTC+AGG + chr3_4:74762407-74762426 Msa0521810:intron 45.0%
CCACCTGACTTTCAGAGAAA+AGG - chr3_4:74762413-74762432 None:intergenic 45.0%
!! CCTTTTCTCTGAAAGTCAGG+TGG + chr3_4:74762410-74762429 Msa0521810:intron 45.0%
AGTCAGGTGGTGAAGACAAA+AGG + chr3_4:74762423-74762442 Msa0521810:intron 45.0%
AGCAACTGAGAAGTCACTCA+TGG + chr3_4:74762974-74762993 Msa0521810:intron 45.0%
GTAAAACGACCACTCAGTTG+AGG - chr3_4:74763227-74763246 None:intergenic 45.0%
! AGGAGGTGTGGCTGAAAAAT+AGG - chr3_4:74763499-74763518 None:intergenic 45.0%
TCTAAGGGTAACGTGTCATC+AGG - chr3_4:74763777-74763796 None:intergenic 45.0%
GGAGATTACACAAGGGAAGT+AGG + chr3_4:74763804-74763823 Msa0521810:CDS 45.0%
TTGTTCAGGAATGCCACCAA+CGG - chr3_4:74763928-74763947 None:intergenic 45.0%
! TTGGTGGCATTCCTGAACAA+AGG + chr3_4:74763928-74763947 Msa0521810:CDS 45.0%
AGAGCATGTTGCCTTTGTTC+AGG - chr3_4:74763942-74763961 None:intergenic 45.0%
GGTAGTACTTGGAATCAACG+GGG - chr3_4:74763971-74763990 None:intergenic 45.0%
ATGCTTGACAACGACACCAA+AGG + chr3_4:74764290-74764309 Msa0521810:CDS 45.0%
CTGTCTACAAGCACAACCTT+TGG - chr3_4:74764309-74764328 None:intergenic 45.0%
AAGGTTGTGCTTGTAGACAG+AGG + chr3_4:74764309-74764328 Msa0521810:CDS 45.0%
TAGACAGAGGAACAAGTGCA+GGG + chr3_4:74764322-74764341 Msa0521810:CDS 45.0%
GGATTCCCTTCATTGCTATC+AGG + chr3_4:74764451-74764470 Msa0521810:CDS 45.0%
AGAGCCCTGATAGCAATGAA+GGG - chr3_4:74764459-74764478 None:intergenic 45.0%
AAGAGCCCTGATAGCAATGA+AGG - chr3_4:74764460-74764479 None:intergenic 45.0%
ACATAGTTCACCACTTGGAG+TGG - chr3_4:74764599-74764618 None:intergenic 45.0%
!! GATTATTTAATATTAATTAT+TGG + chr3_4:74761268-74761287 Msa0521810:intron 5.0%
!! TATATAAATAATAATTATTG+TGG - chr3_4:74761518-74761537 None:intergenic 5.0%
!!! ATTAAAAAATATTTTCATTA+TGG + chr3_4:74762579-74762598 Msa0521810:intron 5.0%
CACCCAGACACACGCAATAT+AGG - chr3_4:74760655-74760674 None:intergenic 50.0%
! AGTCATGACGGGATTGAGTG+TGG + chr3_4:74761221-74761240 Msa0521810:CDS 50.0%
GGGATTGAGTGTGGTACGTA+TGG + chr3_4:74761230-74761249 Msa0521810:intron 50.0%
!! CTCATTTGGCACTTTGGAGC+TGG + chr3_4:74761476-74761495 Msa0521810:CDS 50.0%
!!! GGTCCTTTTCGAAGGGTGTT+TGG + chr3_4:74761893-74761912 Msa0521810:intron 50.0%
GTTCAACTACGGGCTCTCAA+AGG - chr3_4:74762034-74762053 None:intergenic 50.0%
AGCCACACCTCCTTGAATTG+TGG + chr3_4:74763506-74763525 Msa0521810:intron 50.0%
TGCCACAATTCAAGGAGGTG+TGG - chr3_4:74763511-74763530 None:intergenic 50.0%
! TATGTGCAGAGGTATGGGCA+AGG + chr3_4:74763750-74763769 Msa0521810:intron 50.0%
! ATGTGCAGAGGTATGGGCAA+GGG + chr3_4:74763751-74763770 Msa0521810:intron 50.0%
CGGGGAAAATCTCTTCTGGT+TGG - chr3_4:74763908-74763927 None:intergenic 50.0%
CCAACGGGGAAAATCTCTTC+TGG - chr3_4:74763912-74763931 None:intergenic 50.0%
! CCAGAAGAGATTTTCCCCGT+TGG + chr3_4:74763909-74763928 Msa0521810:CDS 50.0%
! GAAGAGATTTTCCCCGTTGG+TGG + chr3_4:74763912-74763931 Msa0521810:CDS 50.0%
TGTTCAGGAATGCCACCAAC+GGG - chr3_4:74763927-74763946 None:intergenic 50.0%
GTAGACAGAGGAACAAGTGC+AGG + chr3_4:74764321-74764340 Msa0521810:CDS 50.0%
TAACGTGAGTCCAGTGGACA+TGG + chr3_4:74764392-74764411 Msa0521810:CDS 50.0%
GATGCACTTTCCATGTCCAC+TGG - chr3_4:74764405-74764424 None:intergenic 50.0%
! GGACATGGAAAGTGCATCAG+TGG + chr3_4:74764407-74764426 Msa0521810:CDS 50.0%
!! AGGGCTCTTTCTGATTTGGC+TGG + chr3_4:74764471-74764490 Msa0521810:CDS 50.0%
!! GCTCTTTCTGATTTGGCTGG+CGG + chr3_4:74764474-74764493 Msa0521810:CDS 50.0%
!! TGAGAAGGTATCAGCCTCGT+TGG - chr3_4:74764514-74764533 None:intergenic 50.0%
CACAGCAACAGAGTTAGTGG+CGG - chr3_4:74764544-74764563 None:intergenic 50.0%
GACCACAGCAACAGAGTTAG+TGG - chr3_4:74764547-74764566 None:intergenic 50.0%
TGTCATCACACCACTCCAAG+TGG + chr3_4:74764586-74764605 Msa0521810:CDS 50.0%
!! TTTGGCACTTTGGAGCTGGC+AGG + chr3_4:74761480-74761499 Msa0521810:CDS 55.0%
GTTCAGGAATGCCACCAACG+GGG - chr3_4:74763926-74763945 None:intergenic 55.0%
!! CTTTCTGATTTGGCTGGCGG+CGG + chr3_4:74764477-74764496 Msa0521810:CDS 55.0%
GGCTGATACCTTCTCACCAC+TGG + chr3_4:74764518-74764537 Msa0521810:CDS 55.0%
CGCCACTAACTCTGTTGCTG+TGG + chr3_4:74764542-74764561 Msa0521810:CDS 55.0%
ACAGAGTTAGTGGCGGCCAG+TGG - chr3_4:74764537-74764556 None:intergenic 60.0%
AGTGGCGGCCAGTGGTGAGA+AGG - chr3_4:74764529-74764548 None:intergenic 65.0%
TTTGGCTGGCGGCGGCACTG+CGG + chr3_4:74764485-74764504 Msa0521810:CDS 70.0%
CGGCACTGCGGAGTCCAACG+AGG + chr3_4:74764497-74764516 Msa0521810:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 74760581 74764809 74760581 ID=Msa0521810;Name=Msa0521810
chr3_4 mRNA 74760581 74764809 74760581 ID=Msa0521810-mRNA-1;Parent=Msa0521810;Name=Msa0521810-mRNA-1;_AED=0.04;_eAED=0.04;_QI=83|1|1|1|0.8|0.66|6|198|355
chr3_4 exon 74760581 74760612 74760581 ID=Msa0521810-mRNA-1:exon:21176;Parent=Msa0521810-mRNA-1
chr3_4 exon 74760633 74760918 74760633 ID=Msa0521810-mRNA-1:exon:21177;Parent=Msa0521810-mRNA-1
chr3_4 exon 74761175 74761242 74761175 ID=Msa0521810-mRNA-1:exon:21178;Parent=Msa0521810-mRNA-1
chr3_4 exon 74761346 74761501 74761346 ID=Msa0521810-mRNA-1:exon:21179;Parent=Msa0521810-mRNA-1
chr3_4 exon 74763759 74764010 74763759 ID=Msa0521810-mRNA-1:exon:21180;Parent=Msa0521810-mRNA-1
chr3_4 exon 74764255 74764809 74764255 ID=Msa0521810-mRNA-1:exon:21181;Parent=Msa0521810-mRNA-1
chr3_4 five_prime_UTR 74760581 74760612 74760581 ID=Msa0521810-mRNA-1:five_prime_utr;Parent=Msa0521810-mRNA-1
chr3_4 five_prime_UTR 74760633 74760683 74760633 ID=Msa0521810-mRNA-1:five_prime_utr;Parent=Msa0521810-mRNA-1
chr3_4 CDS 74760684 74760918 74760684 ID=Msa0521810-mRNA-1:cds;Parent=Msa0521810-mRNA-1
chr3_4 CDS 74761175 74761242 74761175 ID=Msa0521810-mRNA-1:cds;Parent=Msa0521810-mRNA-1
chr3_4 CDS 74761346 74761501 74761346 ID=Msa0521810-mRNA-1:cds;Parent=Msa0521810-mRNA-1
chr3_4 CDS 74763759 74764010 74763759 ID=Msa0521810-mRNA-1:cds;Parent=Msa0521810-mRNA-1
chr3_4 CDS 74764255 74764611 74764255 ID=Msa0521810-mRNA-1:cds;Parent=Msa0521810-mRNA-1
chr3_4 three_prime_UTR 74764612 74764809 74764612 ID=Msa0521810-mRNA-1:three_prime_utr;Parent=Msa0521810-mRNA-1
Gene Sequence

>Msa0521810

ATGGCAGCTACTCATGGGAAAATAGTCTTGTTCATGTTTCTTGTGGCATTTATGTGGTTTAATACCCAAAATGCATTCGTGAGTTGTGCTTTAACACCAAAATTACAAAGGAAAATTGCTAAAATCAACAAAGAGGGTCCTTATTTGGGTTTAATCATACCAAATTCTTTTGAACTTAACCCTCTTCTTCAAAATCCAGGCTATACTGCTAGTGACAACATCATAGATTTTGCAGGAAGGAGATTTCGTTTTGGATCCATTGGCGACAAACCAGTTATACTAGTCATGACGGGATTGAGTGTGATAAACGCAGCTATAACAACACAGCTTCTGTTAAGCTTTTTCAAAGTAGATGGAGTTGTTCATTACGGGATTGCTGGAAATGCAAACCCTTCCTTGCATATCGGAGATGTTGCTATTCCACATTATTGGGCTCATTTGGCACTTTGGAGCTGGCAGAGGTATGGGCAAGGGCCTGATGACACGTTACCCTTAGAAAACAATGGAGATTACACAAGGGAAGTAGGGTATTTAAAATTTGCAGATTTTACATCAAACTTAAGTGCTGGCAGTACATTTGACAACCAACTCAACAATCTATGGTACCAACCAGAAGAGATTTTCCCCGTTGGTGGCATTCCTGAACAAAGGCAACATGCTCTTTGGGTCCCCGTTGATTCCAAGTACTACCTTATTGCCAAAAAACTAGAGCAAATGAAGCTGGAGGCGTGTATAGACTCAGACACATGCTTGACAACGACACCAAAGGTTGTGCTTGTAGACAGAGGAACAAGTGCAGGGTTCTATCTAGACAATGCAGCATACAGAACCTTCATCTACAATAAGTTTAACGTGAGTCCAGTGGACATGGAAAGTGCATCAGTGGCTCTTATATGCTTGCAACAAAGGATTCCCTTCATTGCTATCAGGGCTCTTTCTGATTTGGCTGGCGGCGGCACTGCGGAGTCCAACGAGGCTGATACCTTCTCACCACTGGCCGCCACTAACTCTGTTGCTGTGGTCATTGAGTTTGTGAAGCTACTGTCATCACACCACTCCAAGTGGTGA

Protein sequence

>Msa0521810

MAATHGKIVLFMFLVAFMWFNTQNAFVSCALTPKLQRKIAKINKEGPYLGLIIPNSFELNPLLQNPGYTASDNIIDFAGRRFRFGSIGDKPVILVMTGLSVINAAITTQLLLSFFKVDGVVHYGIAGNANPSLHIGDVAIPHYWAHLALWSWQRYGQGPDDTLPLENNGDYTREVGYLKFADFTSNLSAGSTFDNQLNNLWYQPEEIFPVGGIPEQRQHALWVPVDSKYYLIAKKLEQMKLEACIDSDTCLTTTPKVVLVDRGTSAGFYLDNAAYRTFIYNKFNVSPVDMESASVALICLQQRIPFIAIRALSDLAGGGTAESNEADTFSPLAATNSVAVVIEFVKLLSSHHSKW*