Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348780 | XP_013462014.1 | 96.919 | 357 | 11 | 0 | 1 | 357 | 1 | 357 | 0.0 | 720 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348780 | sp|Q07469|BSPA_POPDE | 29.643 | 280 | 165 | 7 | 70 | 347 | 52 | 301 | 7.98e-35 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348780 | A0A072V1Y8 | 96.919 | 357 | 11 | 0 | 1 | 357 | 1 | 357 | 0.0 | 720 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1348730 | Msa1348780 | 0.977874 | 1.163810e-144 | -8.615850e-47 |
| Msa0383540 | Msa1348780 | 0.826779 | 2.249386e-54 | -8.615850e-47 |
| Msa0387090 | Msa1348780 | 0.933334 | 2.199667e-95 | -8.615850e-47 |
| Msa0387110 | Msa1348780 | 0.978310 | 1.474582e-145 | -8.615850e-47 |
| Msa0433880 | Msa1348780 | 0.843998 | 9.925612e-59 | -8.615850e-47 |
| Msa0477790 | Msa1348780 | 0.849588 | 2.935900e-60 | -8.615850e-47 |
| Msa0521810 | Msa1348780 | 0.820422 | 6.919025e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348780 | MtrunA17_Chr3g0140051 | 96.919 | 357 | 11 | 0 | 1 | 357 | 1 | 357 | 0.0 | 720 |
| Msa1348780 | MtrunA17_Chr3g0140061 | 96.601 | 353 | 12 | 0 | 1 | 353 | 1 | 353 | 0.0 | 709 |
| Msa1348780 | MtrunA17_Chr6g0486081 | 52.698 | 315 | 140 | 4 | 38 | 350 | 29 | 336 | 2.67e-122 | 355 |
| Msa1348780 | MtrunA17_Chr6g0486101 | 50.794 | 315 | 141 | 4 | 38 | 350 | 30 | 332 | 7.67e-117 | 342 |
| Msa1348780 | MtrunA17_Chr6g0486091 | 49.524 | 315 | 145 | 4 | 38 | 350 | 31 | 333 | 6.19e-112 | 329 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1348780 | AT4G28940.1 | 57.321 | 321 | 126 | 3 | 38 | 356 | 33 | 344 | 6.99e-139 | 399 |
| Msa1348780 | AT4G28940.2 | 58.621 | 261 | 99 | 2 | 96 | 356 | 1 | 252 | 3.67e-113 | 330 |
| Msa1348780 | AT4G24340.1 | 37.261 | 314 | 174 | 5 | 39 | 350 | 43 | 335 | 2.82e-66 | 213 |
| Msa1348780 | AT4G24350.1 | 36.306 | 314 | 180 | 6 | 39 | 350 | 38 | 333 | 7.98e-64 | 206 |
| Msa1348780 | AT4G24350.2 | 34.444 | 270 | 159 | 5 | 39 | 306 | 38 | 291 | 1.44e-50 | 171 |
| Msa1348780 | AT4G24350.3 | 36.667 | 240 | 134 | 5 | 111 | 350 | 1 | 222 | 2.18e-48 | 163 |
| Msa1348780 | AT4G24350.4 | 34.634 | 205 | 118 | 4 | 102 | 306 | 9 | 197 | 1.19e-37 | 134 |
Find 107 sgRNAs with CRISPR-Local
Find 271 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACGAAGAGGGTCCTTATT+TGG | 0.132523 | tig0010477:+18190 | Msa1348780:CDS |
| GACTAAATGATTAATATTTA+TGG | 0.136792 | tig0010477:+17896 | None:intergenic |
| CACAACTCACGAATGCATTT+TGG | 0.147904 | tig0010477:-18130 | Msa1348780:intergenic |
| ATGTTGCTATTCCACATTAT+TGG | 0.227186 | tig0010477:+18836 | Msa1348780:CDS |
| CTTCCTATATTGCGTGTGTC+TGG | 0.268657 | tig0010477:+18030 | Msa1348780:five_prime_UTR |
| GGATTCCCTTCATTGCTATC+AGG | 0.272090 | tig0010477:+22329 | Msa1348780:CDS |
| AACAAAGGCAACATGCTCTT+TGG | 0.272171 | tig0010477:+21128 | Msa1348780:CDS |
| TGTTGCTATTCCACATTATT+GGG | 0.272480 | tig0010477:+18837 | Msa1348780:CDS |
| GGTATGATTAAACCCAAATA+AGG | 0.283272 | tig0010477:-18203 | Msa1348780:intergenic |
| GGGTCAAGTTCAAAAGAATT+TGG | 0.317467 | tig0010477:-18224 | Msa1348780:intergenic |
| CTTTGTTCTGGTTGGTTGTC+CGG | 0.319062 | tig0010477:+22554 | Msa1348780:three_prime_UTR |
| TATCAGGGCTCTTTCTGATT+TGG | 0.324485 | tig0010477:+22345 | Msa1348780:CDS |
| CTCATTTGGCACTTTGGAGC+TGG | 0.328354 | tig0010477:+18860 | Msa1348780:CDS |
| TCCACATTATTGGGCTCATT+TGG | 0.331452 | tig0010477:+18846 | Msa1348780:CDS |
| TTGGGTATTAAACAACATAA+AGG | 0.346307 | tig0010477:-18111 | Msa1348780:intergenic |
| AGAGCATGTTGCCTTTGTTC+AGG | 0.348607 | tig0010477:-21124 | Msa1348780:intergenic |
| AACGAAGAGGGTCCTTATTT+GGG | 0.350130 | tig0010477:+18191 | Msa1348780:CDS |
| GCATATAATTGCACTAATTA+CGG | 0.358763 | tig0010477:-22518 | Msa1348780:intergenic |
| CATAGACAACAACTTTGTTC+TGG | 0.367043 | tig0010477:+22542 | Msa1348780:three_prime_UTR |
| GTTGTTCATTACGGGATTGC+TGG | 0.372697 | tig0010477:+18784 | Msa1348780:CDS |
| TAGATGGAGTTGTTCATTAC+GGG | 0.375885 | tig0010477:+18776 | Msa1348780:CDS |
| CCCGTCATGACTAGTATAAC+TGG | 0.382128 | tig0010477:-18594 | Msa1348780:intergenic |
| ACAAGAAATGAAGGACCTAA+TGG | 0.391757 | tig0010477:-18007 | Msa1348780:intergenic |
| CTTTCTACAAGCACAACCTT+TGG | 0.403773 | tig0010477:-22184 | Msa1348780:intergenic |
| CGGTAGTACTTGGAATCAAC+GGG | 0.404829 | tig0010477:-21154 | Msa1348780:intergenic |
| ATTGGGCTCATTTGGCACTT+TGG | 0.416383 | tig0010477:+18854 | Msa1348780:CDS |
| GTCAGCAGCACTTATGTTTG+AGG | 0.420611 | tig0010477:-21029 | Msa1348780:intergenic |
| AGGGCTCTTTCTGATTTGGC+TGG | 0.421164 | tig0010477:+22349 | Msa1348780:CDS |
| GTAGATGGAGTTGTTCATTA+CGG | 0.424060 | tig0010477:+18775 | Msa1348780:CDS |
| ATTTACGCTTTATTATATTC+CGG | 0.425732 | tig0010477:-22573 | Msa1348780:intergenic |
| ACAAAGGCAACATGCTCTTT+GGG | 0.425980 | tig0010477:+21129 | Msa1348780:CDS |
| ACAATCATCTCAACAACCTT+TGG | 0.430065 | tig0010477:+21065 | Msa1348780:CDS |
| TTTGGCAATACGGTAGTACT+TGG | 0.430210 | tig0010477:-21164 | Msa1348780:intergenic |
| GAAGGAAGGAGATTTCGTTT+TGG | 0.431427 | tig0010477:+18555 | Msa1348780:intron |
| CTTTCTGATTTGGCTGGCGG+CGG | 0.432701 | tig0010477:+22355 | Msa1348780:CDS |
| CTCTTATATGCTTGCAACAA+AGG | 0.444049 | tig0010477:+22308 | Msa1348780:CDS |
| TTCCTATATTGCGTGTGTCT+GGG | 0.450123 | tig0010477:+18031 | Msa1348780:five_prime_UTR |
| CACCCAGACACACGCAATAT+AGG | 0.451282 | tig0010477:-18033 | Msa1348780:intergenic |
| GCAAACCCTTCCTTGCATAT+CGG | 0.458109 | tig0010477:+18811 | Msa1348780:CDS |
| TATTAATATATGCAGAGGTA+TGG | 0.462558 | tig0010477:+20923 | Msa1348780:intron |
| AACTAAGCACATCATACAAT+AGG | 0.463759 | tig0010477:+22655 | Msa1348780:three_prime_UTR |
| CAAGAAATGAAGGACCTAAT+GGG | 0.467759 | tig0010477:-18006 | Msa1348780:intergenic |
| GTTAAACTTATTGTAGATGA+AGG | 0.469473 | tig0010477:-22251 | Msa1348780:intergenic |
| GACAACAACTTTGTTCTGGT+TGG | 0.479422 | tig0010477:+22546 | Msa1348780:three_prime_UTR |
| TGTTCAGGAATACCATCAAC+GGG | 0.480731 | tig0010477:-21109 | Msa1348780:intergenic |
| TTTGGCACTTTGGAGCTGGC+AGG | 0.483139 | tig0010477:+18864 | Msa1348780:CDS |
| TCTCTTCTGGTTGGTACCAA+AGG | 0.484946 | tig0010477:-21081 | Msa1348780:intergenic |
| TGATTTGGCTGGCGGCGGCA+CGG | 0.487097 | tig0010477:+22360 | Msa1348780:CDS |
| AAGAGCCCTGATAGCAATGA+AGG | 0.499791 | tig0010477:-22335 | Msa1348780:intergenic |
| ATTAATATATGCAGAGGTAT+GGG | 0.510376 | tig0010477:+20924 | Msa1348780:intron |
| TATAACTGGTTTGTCGCCAA+TGG | 0.510741 | tig0010477:-18580 | Msa1348780:intergenic |
| GACCCTCTTCTTCAAAATCC+AGG | 0.523176 | tig0010477:+18242 | Msa1348780:CDS |
| CCCCTTGGCTTGGTCTGGCT+AGG | 0.523363 | tig0010477:-17950 | Msa1348780:intergenic |
| GTAGAAAGAGGAACAAGTGC+AGG | 0.528295 | tig0010477:+22199 | Msa1348780:CDS |
| GCCTAGCCAGACCAAGCCAA+GGG | 0.528804 | tig0010477:+17949 | Msa1348780:five_prime_UTR |
| TTTATAGAGAATAGAATGAA+GGG | 0.530161 | tig0010477:-17977 | Msa1348780:intergenic |
| GGCTGATACCTTCTCACCAC+TGG | 0.530809 | tig0010477:+22396 | Msa1348780:CDS |
| ATAATAATGGCAGCTACTCA+TGG | 0.532384 | tig0010477:+18059 | Msa1348780:exon |
| GCTTGGTCTGGCTAGGCCGT+AGG | 0.534557 | tig0010477:-17943 | Msa1348780:intergenic |
| TATAGGAAGACAAGAAATGA+AGG | 0.538101 | tig0010477:-18016 | Msa1348780:intergenic |
| ACAGAGTTGGTTGCGGCCAG+TGG | 0.543909 | tig0010477:-22412 | Msa1348780:intergenic |
| GATGCACTTTCCATGTCCAC+TGG | 0.544627 | tig0010477:-22280 | Msa1348780:intergenic |
| GATTCCCTTCATTGCTATCA+GGG | 0.551884 | tig0010477:+22330 | Msa1348780:CDS |
| TTGTCACTAGCAGTATAGCC+TGG | 0.553691 | tig0010477:-18260 | Msa1348780:intergenic |
| TAACGTGAGTCCAGTGGACA+TGG | 0.555563 | tig0010477:+22270 | Msa1348780:CDS |
| ACCAGTTATACTAGTCATGA+CGG | 0.559335 | tig0010477:+18593 | Msa1348780:CDS |
| GGCCTAGCCAGACCAAGCCA+AGG | 0.560772 | tig0010477:+17948 | Msa1348780:five_prime_UTR |
| ACGGTAGTACTTGGAATCAA+CGG | 0.561307 | tig0010477:-21155 | Msa1348780:intergenic |
| ACAGAAAATACTAACTCCTA+CGG | 0.561827 | tig0010477:+17927 | Msa1348780:five_prime_UTR |
| CGCAACCAACTCTGTTGCTG+TGG | 0.562029 | tig0010477:+22420 | Msa1348780:CDS |
| AAGGTTGTGCTTGTAGAAAG+AGG | 0.565517 | tig0010477:+22187 | Msa1348780:CDS |
| AAATGAAGGACCTAATGGGT+TGG | 0.575375 | tig0010477:-18002 | Msa1348780:intergenic |
| AAAACAATGGTGACTACACA+AGG | 0.576219 | tig0010477:+20975 | Msa1348780:CDS |
| GCCAAATGAGCCCAATAATG+TGG | 0.579248 | tig0010477:-18847 | Msa1348780:intergenic |
| ACATCTCCGATATGCAAGGA+AGG | 0.579860 | tig0010477:-18817 | Msa1348780:intergenic |
| TGAGAAGGTATCAGCCTCGT+TGG | 0.580666 | tig0010477:-22389 | Msa1348780:intergenic |
| GGTTGCGGCCAGTGGTGAGA+AGG | 0.583884 | tig0010477:-22404 | Msa1348780:intergenic |
| TAATAATGGCAGCTACTCAT+GGG | 0.584057 | tig0010477:+18060 | Msa1348780:exon |
| TTGTTCAGGAATACCATCAA+CGG | 0.585225 | tig0010477:-21110 | Msa1348780:intergenic |
| GGACATGGAAAGTGCATCAG+TGG | 0.586546 | tig0010477:+22285 | Msa1348780:CDS |
| TGTCTGGGTGTAGATAATAA+TGG | 0.587493 | tig0010477:+18046 | Msa1348780:exon |
| GTGACTACACAAGGGACGTA+GGG | 0.588370 | tig0010477:+20984 | Msa1348780:CDS |
| TCATAACATAGTTCACCACT+TGG | 0.603986 | tig0010477:-22479 | Msa1348780:intergenic |
| GCTCTTTCTGATTTGGCTGG+CGG | 0.606832 | tig0010477:+22352 | Msa1348780:CDS |
| CCAGTTATACTAGTCATGAC+GGG | 0.608599 | tig0010477:+18594 | Msa1348780:CDS |
| CACAGCAACAGAGTTGGTTG+CGG | 0.609393 | tig0010477:-22419 | Msa1348780:intergenic |
| ATTGCTAAAATCAACGAAGA+GGG | 0.614781 | tig0010477:+18179 | Msa1348780:CDS |
| AGCAACATCTCCGATATGCA+AGG | 0.618530 | tig0010477:-18821 | Msa1348780:intergenic |
| AATGACCACAGCAACAGAGT+TGG | 0.629425 | tig0010477:-22425 | Msa1348780:intergenic |
| AATTGCTAAAATCAACGAAG+AGG | 0.634351 | tig0010477:+18178 | Msa1348780:CDS |
| ACATAGTTCACCACTTGGAG+TGG | 0.638822 | tig0010477:-22474 | Msa1348780:intergenic |
| ATGCTTGACAACGACACCAA+AGG | 0.644624 | tig0010477:+22168 | Msa1348780:CDS |
| AGAGCCCTGATAGCAATGAA+GGG | 0.645404 | tig0010477:-22334 | Msa1348780:intergenic |
| GGTGACTACACAAGGGACGT+AGG | 0.645883 | tig0010477:+20983 | Msa1348780:CDS |
| TTGATGGTATTCCTGAACAA+AGG | 0.648077 | tig0010477:+21113 | Msa1348780:CDS |
| CATCTCCGATATGCAAGGAA+GGG | 0.651532 | tig0010477:-18816 | Msa1348780:intergenic |
| TGTCATCACACCACTCCAAG+TGG | 0.653556 | tig0010477:+22464 | Msa1348780:CDS |
| TAAGTTTAACGTGAGTCCAG+TGG | 0.659074 | tig0010477:+22264 | Msa1348780:CDS |
| TAGAAAGAGGAACAAGTGCA+GGG | 0.668433 | tig0010477:+22200 | Msa1348780:CDS |
| AGTCATGACGGGATTGAGTG+TGG | 0.668616 | tig0010477:+18605 | Msa1348780:CDS |
| CCTAGCCAGACCAAGCCAAG+GGG | 0.681589 | tig0010477:+17950 | Msa1348780:five_prime_UTR |
| TATATGCAGAGGTATGGGCA+AGG | 0.693984 | tig0010477:+20929 | Msa1348780:intron |
| CTAGCCAGACCAAGCCAAGG+GGG | 0.709982 | tig0010477:+17951 | Msa1348780:five_prime_UTR |
| ACGTTACCACTAGAAAACAA+TGG | 0.714437 | tig0010477:+20962 | Msa1348780:CDS |
| AAACAATGGTGACTACACAA+GGG | 0.726560 | tig0010477:+20976 | Msa1348780:CDS |
| CGGCACGGCAGAGTCCAACG+AGG | 0.757623 | tig0010477:+22375 | Msa1348780:CDS |
| GGTAGTACTTGGAATCAACG+GGG | 0.827912 | tig0010477:-21153 | Msa1348770:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATATATAATTTTAATTA+TGG | - | tig0010477:20510-20529 | Msa1348780:intergenic | 0.0% |
| !! | ATATATTGTAATAGAAAAAA+AGG | - | tig0010477:19294-19313 | Msa1348780:intergenic | 10.0% |
| !!! | TATTACAATATATAACATTT+TGG | + | tig0010477:19301-19320 | Msa1348780:intron | 10.0% |
| !!! | TGTTTTAATAAAATTACTTT+TGG | - | tig0010477:19645-19664 | Msa1348780:intergenic | 10.0% |
| !! | TGTAATAAAGTATAAATTAT+AGG | - | tig0010477:19938-19957 | Msa1348780:intergenic | 10.0% |
| !!! | TAAAATTACTTTTCTTTTTA+AGG | - | tig0010477:20417-20436 | Msa1348780:intergenic | 10.0% |
| !!! | TATTGATAGTTTTTTTTTAA+GGG | - | tig0010477:20605-20624 | Msa1348780:intergenic | 10.0% |
| !!! | ATATTGATAGTTTTTTTTTA+AGG | - | tig0010477:20606-20625 | Msa1348780:intergenic | 10.0% |
| !!! | ACTTTTTTTTTATTCATTTT+TGG | + | tig0010477:20807-20826 | Msa1348780:intron | 10.0% |
| !! | TTTAAGTAAAATTTAATCAA+AGG | - | tig0010477:21347-21366 | Msa1348780:intergenic | 10.0% |
| !!! | TTTTTTTAATGAAAATTTGA+AGG | - | tig0010477:21538-21557 | Msa1348780:intergenic | 10.0% |
| !!! | GAGTTATTTATTTTATTTTT+TGG | + | tig0010477:21689-21708 | Msa1348780:intron | 10.0% |
| !! | AAAACAAAAATAAAATTACA+CGG | + | tig0010477:22080-22099 | Msa1348780:intron | 10.0% |
| !! | TCATATGTATAATTTAATCT+TGG | - | tig0010477:18340-18359 | Msa1348780:intergenic | 15.0% |
| !!! | TAATTTTCCTCTTTTTTTTA+TGG | + | tig0010477:18524-18543 | Msa1348780:intron | 15.0% |
| !! | TAAATAAATTAAAGTTGAGT+TGG | + | tig0010477:19144-19163 | Msa1348780:intron | 15.0% |
| !! | AAATAAATTAAAGTTGAGTT+GGG | + | tig0010477:19145-19164 | Msa1348780:intron | 15.0% |
| !! | AAATGTTATACTATTATCAA+TGG | + | tig0010477:19257-19276 | Msa1348780:intron | 15.0% |
| !!! | CATTTGGTAATATTAATTTA+AGG | - | tig0010477:19584-19603 | Msa1348780:intergenic | 15.0% |
| !! | TAACTCAATATAAAATGATA+TGG | + | tig0010477:19683-19702 | Msa1348780:intron | 15.0% |
| !! | TAAAAAAAAACTAGATATTC+AGG | + | tig0010477:19733-19752 | Msa1348780:intron | 15.0% |
| !!! | TAAAAAGAAAAGCTTTTTTA+TGG | - | tig0010477:20135-20154 | Msa1348780:intergenic | 15.0% |
| !!! | AAATCATGTAGTTTTTTTTT+AGG | + | tig0010477:20316-20335 | Msa1348780:intron | 15.0% |
| !!! | AATCATGTAGTTTTTTTTTA+GGG | + | tig0010477:20317-20336 | Msa1348780:intron | 15.0% |
| !!! | TTTTATAATTAGTAACAAAC+AGG | - | tig0010477:20377-20396 | Msa1348780:intergenic | 15.0% |
| !!! | ATTGATAGTTTTTTTTTAAG+GGG | - | tig0010477:20604-20623 | Msa1348780:intergenic | 15.0% |
| !! | AGTTAATTAATTAACTATGA+TGG | + | tig0010477:20776-20795 | Msa1348780:intron | 15.0% |
| !! | AATAATATTAATATATGCAG+AGG | + | tig0010477:20918-20937 | Msa1348780:intron | 15.0% |
| !!! | TCTTTGAATTTTTACATATA+TGG | - | tig0010477:21224-21243 | Msa1348780:intergenic | 15.0% |
| !!! | TCAATTTTTACGTATAATTA+AGG | - | tig0010477:21272-21291 | Msa1348780:intergenic | 15.0% |
| !!! | ATTTTACTTAAATTTGAGAT+CGG | + | tig0010477:21355-21374 | Msa1348780:intron | 15.0% |
| !!! | ACTAATATCGATTTTTATTA+TGG | - | tig0010477:21436-21455 | Msa1348780:intergenic | 15.0% |
| !!! | TATATTGCATTTTATATGTA+GGG | - | tig0010477:21787-21806 | Msa1348780:intergenic | 15.0% |
| !!! | TAGGAGTATATTAAATAATT+AGG | - | tig0010477:21986-22005 | Msa1348780:intergenic | 15.0% |
| !!! | AATATAAATCGTGTTTTTAT+TGG | + | tig0010477:22012-22031 | Msa1348780:intron | 15.0% |
| !! | GAGATAAAAAAAAAAAATGT+TGG | - | tig0010477:22057-22076 | Msa1348780:intergenic | 15.0% |
| !!! | TTTTCGAATATATATTTTTC+AGG | + | tig0010477:22111-22130 | Msa1348780:intron | 15.0% |
| !! | TTTATAGAGAATAGAATGAA+GGG | - | tig0010477:17980-17999 | Msa1348780:intergenic | 20.0% |
| !!! | TTTTATAGAGAATAGAATGA+AGG | - | tig0010477:17981-18000 | Msa1348780:intergenic | 20.0% |
| !! | TGAAATTAATTAACTTTGCA+AGG | + | tig0010477:18463-18482 | Msa1348780:intron | 20.0% |
| !! | TTATTAGCCATAAAAAAAAG+AGG | - | tig0010477:18534-18553 | Msa1348780:intergenic | 20.0% |
| !!! | TTTAATAGTTGAGATTTTGT+TGG | - | tig0010477:19109-19128 | Msa1348780:intergenic | 20.0% |
| !!! | AATAAATTAAAGTTGAGTTG+GGG | + | tig0010477:19146-19165 | Msa1348780:intron | 20.0% |
| !!! | GTATAACATTTTAATTCGAA+GGG | - | tig0010477:19248-19267 | Msa1348780:intergenic | 20.0% |
| !!! | AGTATAACATTTTAATTCGA+AGG | - | tig0010477:19249-19268 | Msa1348780:intergenic | 20.0% |
| !!! | TACAATATATAACATTTTGG+TGG | + | tig0010477:19304-19323 | Msa1348780:intron | 20.0% |
| !! | ATATTAATGTGATCGTATAT+TGG | + | tig0010477:19417-19436 | Msa1348780:intron | 20.0% |
| !! | TTATAATGCAAAATAATACG+TGG | + | tig0010477:19454-19473 | Msa1348780:intron | 20.0% |
| !!! | AAATTACTTTTGGTTTATTG+TGG | - | tig0010477:19635-19654 | Msa1348780:intergenic | 20.0% |
| !!! | ATTTTATTAAAACAGAAGTC+AGG | + | tig0010477:19651-19670 | Msa1348780:intron | 20.0% |
| !!! | GTTTTACTCTTACTTTAAAT+TGG | - | tig0010477:19811-19830 | Msa1348780:intergenic | 20.0% |
| !! | ATTTATAGTTACATGCATAT+TGG | + | tig0010477:19967-19986 | Msa1348780:intron | 20.0% |
| !! | TTTATAGTTACATGCATATT+GGG | + | tig0010477:19968-19987 | Msa1348780:intron | 20.0% |
| !!! | TATGTAATTGTAGAATTTTG+CGG | + | tig0010477:19991-20010 | Msa1348780:intron | 20.0% |
| !!! | TAGGTAAAGATTTTTTTAGA+TGG | + | tig0010477:20082-20101 | Msa1348780:intron | 20.0% |
| !!! | AATATGCAATTTCTTTTTCT+TGG | - | tig0010477:20159-20178 | Msa1348780:intergenic | 20.0% |
| !! | TATTTACAGGTAATTTGATT+AGG | - | tig0010477:20282-20301 | Msa1348780:intergenic | 20.0% |
| !!! | CATTTTTCTGTGTTTTTTTT+TGG | - | tig0010477:20640-20659 | Msa1348780:intergenic | 20.0% |
| !! | TATCATGATTAATATATACG+TGG | + | tig0010477:20742-20761 | Msa1348780:intron | 20.0% |
| !! | ATTAGCGAATTGTATATTAA+CGG | + | tig0010477:20869-20888 | Msa1348780:intron | 20.0% |
| !!! | AATTTTTACATATATGGTAC+TGG | - | tig0010477:21218-21237 | Msa1348780:intergenic | 20.0% |
| !!! | AATGTTTTTGTTCCAAATTT+TGG | + | tig0010477:21304-21323 | Msa1348780:intron | 20.0% |
| !!! | ATATTGCATTTTATATGTAG+GGG | - | tig0010477:21786-21805 | Msa1348780:intergenic | 20.0% |
| !!! | GTATATTGCATTTTATATGT+AGG | - | tig0010477:21788-21807 | Msa1348780:intergenic | 20.0% |
| !! | CATAAAATAATACAGCATAT+TGG | + | tig0010477:21853-21872 | Msa1348780:intron | 20.0% |
| !! | CACGATTTATATTTGTATAT+AGG | - | tig0010477:22005-22024 | Msa1348780:intergenic | 20.0% |
| !!! | ATTTACGCTTTATTATATTC+CGG | - | tig0010477:22576-22595 | Msa1348780:intergenic | 20.0% |
| ! | TTGGGTATTAAACAACATAA+AGG | - | tig0010477:18114-18133 | Msa1348780:intergenic | 25.0% |
| !! | TAATCTTGGTCCTTTTAAAT+GGG | - | tig0010477:18326-18345 | Msa1348780:intergenic | 25.0% |
| !! | TTAATCTTGGTCCTTTTAAA+TGG | - | tig0010477:18327-18346 | Msa1348780:intergenic | 25.0% |
| ! | GCTCTAGTTAAAATAAACTT+TGG | - | tig0010477:18368-18387 | Msa1348780:intergenic | 25.0% |
| ! | TCAGTGAAGATTTGTAAATT+AGG | - | tig0010477:18414-18433 | Msa1348780:intergenic | 25.0% |
| !!! | TCATTGTTATTTTCTGTTGA+TGG | - | tig0010477:18446-18465 | Msa1348780:intergenic | 25.0% |
| !!! | TTTTTTATGGCTAATAACGA+AGG | + | tig0010477:18537-18556 | Msa1348780:intron | 25.0% |
| !!! | TTAAGCTTTTTCAAAGTAGA+TGG | + | tig0010477:18760-18779 | Msa1348780:CDS | 25.0% |
| !! | TGTTTTATAACTATCTTCGA+AGG | + | tig0010477:19208-19227 | Msa1348780:intron | 25.0% |
| ! | ATTACCAAATGTGTGTTTAA+AGG | + | tig0010477:19593-19612 | Msa1348780:intron | 25.0% |
| ! | TTTATTGTGGAAAAATAGTG+GGG | - | tig0010477:19622-19641 | Msa1348780:intergenic | 25.0% |
| ! | GTTTATTGTGGAAAAATAGT+GGG | - | tig0010477:19623-19642 | Msa1348780:intergenic | 25.0% |
| ! | ATGAATTATCACATCCAAAT+TGG | + | tig0010477:19836-19855 | Msa1348780:intron | 25.0% |
| !! | AAGAGACATTTTATGTGTTA+GGG | - | tig0010477:20190-20209 | Msa1348780:intergenic | 25.0% |
| !! | AAAGAGACATTTTATGTGTT+AGG | - | tig0010477:20191-20210 | Msa1348780:intergenic | 25.0% |
| ! | TGTACTTAAAAGATACAAGA+TGG | + | tig0010477:20226-20245 | Msa1348780:intron | 25.0% |
| ! | TGGTTAATAGACACAAAATA+AGG | - | tig0010477:20490-20509 | Msa1348780:intergenic | 25.0% |
| ! | TATTAATATATGCAGAGGTA+TGG | + | tig0010477:20923-20942 | Msa1348780:intron | 25.0% |
| !! | ATTAATATATGCAGAGGTAT+GGG | + | tig0010477:20924-20943 | Msa1348780:intron | 25.0% |
| ! | GACATATTTAGTCCAAAATT+TGG | - | tig0010477:21319-21338 | Msa1348780:intergenic | 25.0% |
| ! | AATGAGTAATCTCGAAAATT+TGG | - | tig0010477:21651-21670 | Msa1348780:intergenic | 25.0% |
| ! | ATAAATAACTCTCATTCTCA+AGG | - | tig0010477:21680-21699 | Msa1348780:intergenic | 25.0% |
| ! | ACATAGAATGAAAGAGTTAT+TGG | + | tig0010477:21828-21847 | Msa1348780:intron | 25.0% |
| ! | AGTAAAAATATTTCGTTGAG+TGG | - | tig0010477:21882-21901 | Msa1348780:intergenic | 25.0% |
| ! | GTTAAACTTATTGTAGATGA+AGG | - | tig0010477:22254-22273 | Msa1348780:intergenic | 25.0% |
| ! | GCATATAATTGCACTAATTA+CGG | - | tig0010477:22521-22540 | Msa1348780:intergenic | 25.0% |
| ACAGAAAATACTAACTCCTA+CGG | + | tig0010477:17927-17946 | Msa1348780:five_prime_UTR | 30.0% | |
| TCTATAAAAACCAACCCATT+AGG | + | tig0010477:17992-18011 | Msa1348780:five_prime_UTR | 30.0% | |
| TATAGGAAGACAAGAAATGA+AGG | - | tig0010477:18019-18038 | Msa1348780:intergenic | 30.0% | |
| AATTGCTAAAATCAACGAAG+AGG | + | tig0010477:18178-18197 | Msa1348780:CDS | 30.0% | |
| ATTGCTAAAATCAACGAAGA+GGG | + | tig0010477:18179-18198 | Msa1348780:CDS | 30.0% | |
| GGTATGATTAAACCCAAATA+AGG | - | tig0010477:18206-18225 | Msa1348780:intergenic | 30.0% | |
| GTGAAGATTTGTAAATTAGG+TGG | - | tig0010477:18411-18430 | Msa1348780:intergenic | 30.0% | |
| ! | ATGTTGCTATTCCACATTAT+TGG | + | tig0010477:18836-18855 | Msa1348780:CDS | 30.0% |
| ! | TGTTGCTATTCCACATTATT+GGG | + | tig0010477:18837-18856 | Msa1348780:CDS | 30.0% |
| AGTAGAAAATACTGTATCCT+GGG | - | tig0010477:18910-18929 | Msa1348780:intergenic | 30.0% | |
| ACCTTGCATATATTATGCAT+TGG | + | tig0010477:19339-19358 | Msa1348780:intron | 30.0% | |
| ACCAATGCATAATATATGCA+AGG | - | tig0010477:19343-19362 | Msa1348780:intergenic | 30.0% | |
| ! | GTTAAACCTTTATTTGTTGC+TGG | - | tig0010477:19547-19566 | Msa1348780:intergenic | 30.0% |
| GTTTCCTTTAAACACACATT+TGG | - | tig0010477:19600-19619 | Msa1348780:intergenic | 30.0% | |
| GGTTTATTGTGGAAAAATAG+TGG | - | tig0010477:19624-19643 | Msa1348780:intergenic | 30.0% | |
| ACGTAATCAAACATTGAGAT+TGG | - | tig0010477:19783-19802 | Msa1348780:intergenic | 30.0% | |
| TTATCACATCCAAATTGGTA+AGG | + | tig0010477:19841-19860 | Msa1348780:intron | 30.0% | |
| TATCACATCCAAATTGGTAA+GGG | + | tig0010477:19842-19861 | Msa1348780:intron | 30.0% | |
| !! | TTTACATATATGGTACTGGT+TGG | - | tig0010477:21214-21233 | Msa1348780:intergenic | 30.0% |
| AATCTCGAAAATTTGGTTGA+CGG | - | tig0010477:21644-21663 | Msa1348780:intergenic | 30.0% | |
| ! | ACATTTTAAATGTGGAGAAG+TGG | + | tig0010477:21739-21758 | Msa1348780:intron | 30.0% |
| ! | CATTTTAAATGTGGAGAAGT+GGG | + | tig0010477:21740-21759 | Msa1348780:intron | 30.0% |
| ! | ATTTTAAATGTGGAGAAGTG+GGG | + | tig0010477:21741-21760 | Msa1348780:intron | 30.0% |
| !!! | AGATTGTGTTTTGACGTTTT+TGG | + | tig0010477:21955-21974 | Msa1348780:intron | 30.0% |
| AATGTTGGATTGTCTATTTG+TGG | - | tig0010477:22042-22061 | Msa1348780:intergenic | 30.0% | |
| AACTAAGCACATCATACAAT+AGG | + | tig0010477:22655-22674 | Msa1348780:three_prime_UTR | 30.0% | |
| CAAGAAATGAAGGACCTAAT+GGG | - | tig0010477:18009-18028 | Msa1348780:intergenic | 35.0% | |
| ACAAGAAATGAAGGACCTAA+TGG | - | tig0010477:18010-18029 | Msa1348780:intergenic | 35.0% | |
| TGTCTGGGTGTAGATAATAA+TGG | + | tig0010477:18046-18065 | Msa1348780:exon | 35.0% | |
| ATAATAATGGCAGCTACTCA+TGG | + | tig0010477:18059-18078 | Msa1348780:exon | 35.0% | |
| TAATAATGGCAGCTACTCAT+GGG | + | tig0010477:18060-18079 | Msa1348780:exon | 35.0% | |
| ! | ACAACTCACGAATGCATTTT+GGG | - | tig0010477:18132-18151 | Msa1348780:intergenic | 35.0% |
| GGGTCAAGTTCAAAAGAATT+TGG | - | tig0010477:18227-18246 | Msa1348780:intergenic | 35.0% | |
| ! | GACAACATCATAGATTTTGC+AGG | + | tig0010477:18278-18297 | Msa1348780:CDS | 35.0% |
| TTATGGCTAATAACGAAGGA+AGG | + | tig0010477:18541-18560 | Msa1348780:intron | 35.0% | |
| !! | AGATTTCGTTTTGGATCCAT+TGG | + | tig0010477:18564-18583 | Msa1348780:CDS | 35.0% |
| ACCAGTTATACTAGTCATGA+CGG | + | tig0010477:18593-18612 | Msa1348780:CDS | 35.0% | |
| GTAGATGGAGTTGTTCATTA+CGG | + | tig0010477:18775-18794 | Msa1348780:CDS | 35.0% | |
| TAGATGGAGTTGTTCATTAC+GGG | + | tig0010477:18776-18795 | Msa1348780:CDS | 35.0% | |
| CAGTAGAAAATACTGTATCC+TGG | - | tig0010477:18911-18930 | Msa1348780:intergenic | 35.0% | |
| !!! | CTATATCTCAAGCTAGCTTT+TGG | + | tig0010477:19069-19088 | Msa1348780:intron | 35.0% |
| TGCATAATATATGCAAGGTC+CGG | - | tig0010477:19338-19357 | Msa1348780:intergenic | 35.0% | |
| TAGACACCAGCAACAAATAA+AGG | + | tig0010477:19538-19557 | Msa1348780:intron | 35.0% | |
| ATTGAGAGAAACACACTTCA+CGG | + | tig0010477:19883-19902 | Msa1348780:intron | 35.0% | |
| AGAAAAATGACGTTAGTGCT+AGG | + | tig0010477:20651-20670 | Msa1348780:intron | 35.0% | |
| AGCGAATTGTATATTAACGG+TGG | + | tig0010477:20872-20891 | Msa1348780:intron | 35.0% | |
| GCGAATTGTATATTAACGGT+GGG | + | tig0010477:20873-20892 | Msa1348780:intron | 35.0% | |
| ACGTTACCACTAGAAAACAA+TGG | + | tig0010477:20962-20981 | Msa1348780:CDS | 35.0% | |
| ! | TAGTCACCATTGTTTTCTAG+TGG | - | tig0010477:20971-20990 | Msa1348780:intergenic | 35.0% |
| AAAACAATGGTGACTACACA+AGG | + | tig0010477:20975-20994 | Msa1348780:CDS | 35.0% | |
| AAACAATGGTGACTACACAA+GGG | + | tig0010477:20976-20995 | Msa1348780:CDS | 35.0% | |
| ACAATCATCTCAACAACCTT+TGG | + | tig0010477:21065-21084 | Msa1348780:CDS | 35.0% | |
| TTGTTCAGGAATACCATCAA+CGG | - | tig0010477:21113-21132 | Msa1348780:intergenic | 35.0% | |
| ! | TTGATGGTATTCCTGAACAA+AGG | + | tig0010477:21113-21132 | Msa1348780:CDS | 35.0% |
| ATCTCGAAAATTTGGTTGAC+GGG | - | tig0010477:21643-21662 | Msa1348780:intergenic | 35.0% | |
| ! | GACCTCACACATTTTAAATG+TGG | + | tig0010477:21731-21750 | Msa1348780:intron | 35.0% |
| ! | CTCCACATTTAAAATGTGTG+AGG | - | tig0010477:21736-21755 | Msa1348780:intergenic | 35.0% |
| ! | GCATTTTATATGTAGGGGTT+GGG | - | tig0010477:21781-21800 | Msa1348780:intergenic | 35.0% |
| ! | TGCATTTTATATGTAGGGGT+TGG | - | tig0010477:21782-21801 | Msa1348780:intergenic | 35.0% |
| TTGGATTGTCTATTTGTGGT+CGG | - | tig0010477:22038-22057 | Msa1348780:intergenic | 35.0% | |
| CTCTTATATGCTTGCAACAA+AGG | + | tig0010477:22308-22327 | Msa1348780:CDS | 35.0% | |
| TCATAACATAGTTCACCACT+TGG | - | tig0010477:22482-22501 | Msa1348780:intergenic | 35.0% | |
| CATAGACAACAACTTTGTTC+TGG | + | tig0010477:22542-22561 | Msa1348780:three_prime_UTR | 35.0% | |
| ! | AAATGAAGGACCTAATGGGT+TGG | - | tig0010477:18005-18024 | Msa1348780:intergenic | 40.0% |
| TTCCTATATTGCGTGTGTCT+GGG | + | tig0010477:18031-18050 | Msa1348780:five_prime_UTR | 40.0% | |
| ! | CACAACTCACGAATGCATTT+TGG | - | tig0010477:18133-18152 | Msa1348780:intergenic | 40.0% |
| ! | AACGAAGAGGGTCCTTATTT+GGG | + | tig0010477:18191-18210 | Msa1348780:CDS | 40.0% |
| !! | AGCCTGGATTTTGAAGAAGA+GGG | - | tig0010477:18247-18266 | Msa1348780:intergenic | 40.0% |
| !! | TAGCCTGGATTTTGAAGAAG+AGG | - | tig0010477:18248-18267 | Msa1348780:intergenic | 40.0% |
| TCTATTCCGGCCCATTTAAA+AGG | + | tig0010477:18313-18332 | Msa1348780:intron | 40.0% | |
| ! | GAAGGAAGGAGATTTCGTTT+TGG | + | tig0010477:18555-18574 | Msa1348780:intron | 40.0% |
| !! | TATAACTGGTTTGTCGCCAA+TGG | - | tig0010477:18583-18602 | Msa1348780:intergenic | 40.0% |
| CCAGTTATACTAGTCATGAC+GGG | + | tig0010477:18594-18613 | Msa1348780:CDS | 40.0% | |
| TCCACATTATTGGGCTCATT+TGG | + | tig0010477:18846-18865 | Msa1348780:CDS | 40.0% | |
| TACAGTCCACAATAATTCCC+AGG | + | tig0010477:18890-18909 | Msa1348780:intron | 40.0% | |
| CTGTATCCTGGGAATTATTG+TGG | - | tig0010477:18899-18918 | Msa1348780:intergenic | 40.0% | |
| !!! | CATTTTGGTGGTGTGAATTC+CGG | + | tig0010477:19316-19335 | Msa1348780:intron | 40.0% |
| GCTGGTGTCTATAATGACTA+GGG | - | tig0010477:19529-19548 | Msa1348780:intergenic | 40.0% | |
| TGCTGGTGTCTATAATGACT+AGG | - | tig0010477:19530-19549 | Msa1348780:intergenic | 40.0% | |
| GATTGGACTCTCGAATTGAT+CGG | - | tig0010477:19766-19785 | Msa1348780:intergenic | 40.0% | |
| CGATTTCTCCCTTACCAATT+TGG | - | tig0010477:19853-19872 | Msa1348780:intergenic | 40.0% | |
| ! | ACACACTTCACGGTTCTAAT+TGG | + | tig0010477:19893-19912 | Msa1348780:intron | 40.0% |
| ! | CACACTTCACGGTTCTAATT+GGG | + | tig0010477:19894-19913 | Msa1348780:intron | 40.0% |
| TTAGTGCTAGGACAAATGTC+TGG | + | tig0010477:20663-20682 | Msa1348780:intron | 40.0% | |
| TCAACGGGAAAAATCTCTTC+TGG | - | tig0010477:21097-21116 | Msa1348780:intergenic | 40.0% | |
| ! | GAAGAGATTTTTCCCGTTGA+TGG | + | tig0010477:21097-21116 | Msa1348780:CDS | 40.0% |
| TGTTCAGGAATACCATCAAC+GGG | - | tig0010477:21112-21131 | Msa1348780:intergenic | 40.0% | |
| AACAAAGGCAACATGCTCTT+TGG | + | tig0010477:21128-21147 | Msa1348780:CDS | 40.0% | |
| ACAAAGGCAACATGCTCTTT+GGG | + | tig0010477:21129-21148 | Msa1348780:CDS | 40.0% | |
| ACGGTAGTACTTGGAATCAA+CGG | - | tig0010477:21158-21177 | Msa1348780:intergenic | 40.0% | |
| TTTGGCAATACGGTAGTACT+TGG | - | tig0010477:21167-21186 | Msa1348780:intergenic | 40.0% | |
| !!! | CCTCGAGTTTTTTGGCAATA+CGG | - | tig0010477:21177-21196 | Msa1348780:intergenic | 40.0% |
| TTGCCAAAAAACTCGAGGTA+TGG | + | tig0010477:21179-21198 | Msa1348780:intron | 40.0% | |
| !!! | AGACCATACCTCGAGTTTTT+TGG | - | tig0010477:21185-21204 | Msa1348780:intergenic | 40.0% |
| AAAAACTCGAGGTATGGTCT+AGG | + | tig0010477:21185-21204 | Msa1348780:intron | 40.0% | |
| CTTTCTACAAGCACAACCTT+TGG | - | tig0010477:22187-22206 | Msa1348780:intergenic | 40.0% | |
| AAGGTTGTGCTTGTAGAAAG+AGG | + | tig0010477:22187-22206 | Msa1348780:CDS | 40.0% | |
| TAGAAAGAGGAACAAGTGCA+GGG | + | tig0010477:22200-22219 | Msa1348780:CDS | 40.0% | |
| TAAGTTTAACGTGAGTCCAG+TGG | + | tig0010477:22264-22283 | Msa1348780:CDS | 40.0% | |
| GATTCCCTTCATTGCTATCA+GGG | + | tig0010477:22330-22349 | Msa1348780:CDS | 40.0% | |
| TATCAGGGCTCTTTCTGATT+TGG | + | tig0010477:22345-22364 | Msa1348780:CDS | 40.0% | |
| GACAACAACTTTGTTCTGGT+TGG | + | tig0010477:22546-22565 | Msa1348780:three_prime_UTR | 40.0% | |
| CTTCCTATATTGCGTGTGTC+TGG | + | tig0010477:18030-18049 | Msa1348780:five_prime_UTR | 45.0% | |
| CAACGAAGAGGGTCCTTATT+TGG | + | tig0010477:18190-18209 | Msa1348780:CDS | 45.0% | |
| GACCCTCTTCTTCAAAATCC+AGG | + | tig0010477:18242-18261 | Msa1348780:CDS | 45.0% | |
| TTGTCACTAGCAGTATAGCC+TGG | - | tig0010477:18263-18282 | Msa1348780:intergenic | 45.0% | |
| GTAAGTGCATGCGTCTATTC+CGG | + | tig0010477:18300-18319 | Msa1348780:intron | 45.0% | |
| ! | CTTGGTCCTTTTAAATGGGC+CGG | - | tig0010477:18322-18341 | Msa1348780:intergenic | 45.0% |
| AGAGCTGCACCTAGTAAACA+AGG | + | tig0010477:18383-18402 | Msa1348780:intron | 45.0% | |
| GAGCTGCACCTAGTAAACAA+GGG | + | tig0010477:18384-18403 | Msa1348780:intron | 45.0% | |
| ! | TAGGTGGTCCCTTGTTTACT+AGG | - | tig0010477:18395-18414 | Msa1348780:intergenic | 45.0% |
| CCCGTCATGACTAGTATAAC+TGG | - | tig0010477:18597-18616 | Msa1348780:intergenic | 45.0% | |
| GTTGTTCATTACGGGATTGC+TGG | + | tig0010477:18784-18803 | Msa1348780:CDS | 45.0% | |
| GCAAACCCTTCCTTGCATAT+CGG | + | tig0010477:18811-18830 | Msa1348780:CDS | 45.0% | |
| CATCTCCGATATGCAAGGAA+GGG | - | tig0010477:18819-18838 | Msa1348780:intergenic | 45.0% | |
| ACATCTCCGATATGCAAGGA+AGG | - | tig0010477:18820-18839 | Msa1348780:intergenic | 45.0% | |
| AGCAACATCTCCGATATGCA+AGG | - | tig0010477:18824-18843 | Msa1348780:intergenic | 45.0% | |
| GCCAAATGAGCCCAATAATG+TGG | - | tig0010477:18850-18869 | Msa1348780:intergenic | 45.0% | |
| ATTGGGCTCATTTGGCACTT+TGG | + | tig0010477:18854-18873 | Msa1348780:CDS | 45.0% | |
| CGTCTCATAACTTACCTCTC+AGG | + | tig0010477:20692-20711 | Msa1348780:intron | 45.0% | |
| ! | TATATGCAGAGGTATGGGCA+AGG | + | tig0010477:20929-20948 | Msa1348780:intron | 45.0% |
| GTCAGCAGCACTTATGTTTG+AGG | - | tig0010477:21032-21051 | Msa1348780:intergenic | 45.0% | |
| ! | TCTCTTCTGGTTGGTACCAA+AGG | - | tig0010477:21084-21103 | Msa1348780:intergenic | 45.0% |
| CGGGAAAAATCTCTTCTGGT+TGG | - | tig0010477:21093-21112 | Msa1348780:intergenic | 45.0% | |
| AGAGCATGTTGCCTTTGTTC+AGG | - | tig0010477:21127-21146 | Msa1348780:intergenic | 45.0% | |
| GGTAGTACTTGGAATCAACG+GGG | - | tig0010477:21156-21175 | Msa1348780:intergenic | 45.0% | |
| CGGTAGTACTTGGAATCAAC+GGG | - | tig0010477:21157-21176 | Msa1348780:intergenic | 45.0% | |
| CCGTATTGCCAAAAAACTCG+AGG | + | tig0010477:21174-21193 | Msa1348780:CDS | 45.0% | |
| GTCTGTGAGCTTAGCTCATT+TGG | - | tig0010477:21810-21829 | Msa1348780:intergenic | 45.0% | |
| ATGCTTGACAACGACACCAA+AGG | + | tig0010477:22168-22187 | Msa1348780:CDS | 45.0% | |
| GTAGAAAGAGGAACAAGTGC+AGG | + | tig0010477:22199-22218 | Msa1348780:CDS | 45.0% | |
| GGATTCCCTTCATTGCTATC+AGG | + | tig0010477:22329-22348 | Msa1348780:CDS | 45.0% | |
| AGAGCCCTGATAGCAATGAA+GGG | - | tig0010477:22337-22356 | Msa1348780:intergenic | 45.0% | |
| AAGAGCCCTGATAGCAATGA+AGG | - | tig0010477:22338-22357 | Msa1348780:intergenic | 45.0% | |
| AATGACCACAGCAACAGAGT+TGG | - | tig0010477:22428-22447 | Msa1348780:intergenic | 45.0% | |
| ACATAGTTCACCACTTGGAG+TGG | - | tig0010477:22477-22496 | Msa1348780:intergenic | 45.0% | |
| ! | CTTTGTTCTGGTTGGTTGTC+CGG | + | tig0010477:22554-22573 | Msa1348780:three_prime_UTR | 45.0% |
| !! | GATTATTTAATATTAATTAT+TGG | + | tig0010477:18652-18671 | Msa1348780:intron | 5.0% |
| !!! | ATCTTTAAAATTATAAATTT+AGG | + | tig0010477:20063-20082 | Msa1348780:intron | 5.0% |
| !! | TAAAAAAAAAAAATATTTAC+AGG | - | tig0010477:20295-20314 | Msa1348780:intergenic | 5.0% |
| !!! | ATAAAAAAAAATCATATTTT+TGG | - | tig0010477:21462-21481 | Msa1348780:intergenic | 5.0% |
| AGAATGAAGGGTAACCCCCT+TGG | - | tig0010477:17968-17987 | Msa1348780:intergenic | 50.0% | |
| CACCCAGACACACGCAATAT+AGG | - | tig0010477:18036-18055 | Msa1348780:intergenic | 50.0% | |
| ! | AGTCATGACGGGATTGAGTG+TGG | + | tig0010477:18605-18624 | Msa1348780:CDS | 50.0% |
| GGGATTGAGTGTGGTACGTA+TGG | + | tig0010477:18614-18633 | Msa1348780:intron | 50.0% | |
| !! | CTCATTTGGCACTTTGGAGC+TGG | + | tig0010477:18860-18879 | Msa1348780:CDS | 50.0% |
| CTGCGTGAGCTTAACTCAGT+TGG | - | tig0010477:19370-19389 | Msa1348780:intergenic | 50.0% | |
| GAGTTAAGCTCACGCAGACT+TGG | + | tig0010477:19373-19392 | Msa1348780:intron | 50.0% | |
| GTGACTACACAAGGGACGTA+GGG | + | tig0010477:20984-21003 | Msa1348780:CDS | 50.0% | |
| TAACGTGAGTCCAGTGGACA+TGG | + | tig0010477:22270-22289 | Msa1348780:CDS | 50.0% | |
| GATGCACTTTCCATGTCCAC+TGG | - | tig0010477:22283-22302 | Msa1348780:intergenic | 50.0% | |
| ! | GGACATGGAAAGTGCATCAG+TGG | + | tig0010477:22285-22304 | Msa1348780:CDS | 50.0% |
| !! | AGGGCTCTTTCTGATTTGGC+TGG | + | tig0010477:22349-22368 | Msa1348780:CDS | 50.0% |
| !! | GCTCTTTCTGATTTGGCTGG+CGG | + | tig0010477:22352-22371 | Msa1348780:CDS | 50.0% |
| !! | TGAGAAGGTATCAGCCTCGT+TGG | - | tig0010477:22392-22411 | Msa1348780:intergenic | 50.0% |
| ! | CACAGCAACAGAGTTGGTTG+CGG | - | tig0010477:22422-22441 | Msa1348780:intergenic | 50.0% |
| TGTCATCACACCACTCCAAG+TGG | + | tig0010477:22464-22483 | Msa1348780:CDS | 50.0% | |
| !! | TTTGGCACTTTGGAGCTGGC+AGG | + | tig0010477:18864-18883 | Msa1348780:CDS | 55.0% |
| GCTCTCACGTCGTCATTGCT+AGG | + | tig0010477:20714-20733 | Msa1348780:intron | 55.0% | |
| GGTGACTACACAAGGGACGT+AGG | + | tig0010477:20983-21002 | Msa1348780:CDS | 55.0% | |
| ! | ATGTGGAGAAGTGGGGTGTC+AGG | + | tig0010477:21748-21767 | Msa1348780:intron | 55.0% |
| ! | TGTGGAGAAGTGGGGTGTCA+GGG | + | tig0010477:21749-21768 | Msa1348780:intron | 55.0% |
| !! | CTTTCTGATTTGGCTGGCGG+CGG | + | tig0010477:22355-22374 | Msa1348780:CDS | 55.0% |
| GGCTGATACCTTCTCACCAC+TGG | + | tig0010477:22396-22415 | Msa1348780:CDS | 55.0% | |
| CGCAACCAACTCTGTTGCTG+TGG | + | tig0010477:22420-22439 | Msa1348780:CDS | 55.0% | |
| GCCTAGCCAGACCAAGCCAA+GGG | + | tig0010477:17949-17968 | Msa1348780:five_prime_UTR | 60.0% | |
| CCTAGCCAGACCAAGCCAAG+GGG | + | tig0010477:17950-17969 | Msa1348780:five_prime_UTR | 60.0% | |
| CTAGCCAGACCAAGCCAAGG+GGG | + | tig0010477:17951-17970 | Msa1348780:five_prime_UTR | 60.0% | |
| !! | GTAACCCCCTTGGCTTGGTC+TGG | - | tig0010477:17958-17977 | Msa1348780:intergenic | 60.0% |
| GAAGGGTAACCCCCTTGGCT+TGG | - | tig0010477:17963-17982 | Msa1348780:intergenic | 60.0% | |
| TGACGACGTGAGAGCCTGAG+AGG | - | tig0010477:20709-20728 | Msa1348780:intergenic | 60.0% | |
| ! | ACAGAGTTGGTTGCGGCCAG+TGG | - | tig0010477:22415-22434 | Msa1348780:intergenic | 60.0% |
| GCTTGGTCTGGCTAGGCCGT+AGG | - | tig0010477:17946-17965 | Msa1348780:intergenic | 65.0% | |
| GGCCTAGCCAGACCAAGCCA+AGG | + | tig0010477:17948-17967 | Msa1348780:five_prime_UTR | 65.0% | |
| !! | CCCCTTGGCTTGGTCTGGCT+AGG | - | tig0010477:17953-17972 | Msa1348780:intergenic | 65.0% |
| ! | TGATTTGGCTGGCGGCGGCA+CGG | + | tig0010477:22360-22379 | Msa1348780:CDS | 65.0% |
| GGTTGCGGCCAGTGGTGAGA+AGG | - | tig0010477:22407-22426 | Msa1348780:intergenic | 65.0% | |
| CGGCACGGCAGAGTCCAACG+AGG | + | tig0010477:22375-22394 | Msa1348780:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0010477 | gene | 17908 | 22703 | 17908 | ID=Msa1348780;Name=Msa1348780 |
| tig0010477 | mRNA | 17908 | 22703 | 17908 | ID=Msa1348780-mRNA-1;Parent=Msa1348780;Name=Msa1348780-mRNA-1;_AED=0.05;_eAED=0.05;_QI=157|1|1|1|1|1|5|214|357 |
| tig0010477 | exon | 17908 | 18299 | 17908 | ID=Msa1348780-mRNA-1:exon:6576;Parent=Msa1348780-mRNA-1 |
| tig0010477 | exon | 18559 | 18626 | 18559 | ID=Msa1348780-mRNA-1:exon:6577;Parent=Msa1348780-mRNA-1 |
| tig0010477 | exon | 18730 | 18885 | 18730 | ID=Msa1348780-mRNA-1:exon:6578;Parent=Msa1348780-mRNA-1 |
| tig0010477 | exon | 20938 | 21195 | 20938 | ID=Msa1348780-mRNA-1:exon:6579;Parent=Msa1348780-mRNA-1 |
| tig0010477 | exon | 22133 | 22703 | 22133 | ID=Msa1348780-mRNA-1:exon:6580;Parent=Msa1348780-mRNA-1 |
| tig0010477 | five_prime_UTR | 17908 | 18064 | 17908 | ID=Msa1348780-mRNA-1:five_prime_utr;Parent=Msa1348780-mRNA-1 |
| tig0010477 | CDS | 18065 | 18299 | 18065 | ID=Msa1348780-mRNA-1:cds;Parent=Msa1348780-mRNA-1 |
| tig0010477 | CDS | 18559 | 18626 | 18559 | ID=Msa1348780-mRNA-1:cds;Parent=Msa1348780-mRNA-1 |
| tig0010477 | CDS | 18730 | 18885 | 18730 | ID=Msa1348780-mRNA-1:cds;Parent=Msa1348780-mRNA-1 |
| tig0010477 | CDS | 20938 | 21195 | 20938 | ID=Msa1348780-mRNA-1:cds;Parent=Msa1348780-mRNA-1 |
| tig0010477 | CDS | 22133 | 22489 | 22133 | ID=Msa1348780-mRNA-1:cds;Parent=Msa1348780-mRNA-1 |
| tig0010477 | three_prime_UTR | 22490 | 22703 | 22490 | ID=Msa1348780-mRNA-1:three_prime_utr;Parent=Msa1348780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
