Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387090 | AFK43228.1 | 96.053 | 152 | 6 | 0 | 94 | 245 | 1 | 152 | 1.12e-101 | 302 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387090 | sp|Q07469|BSPA_POPDE | 33.945 | 109 | 67 | 3 | 142 | 246 | 29 | 136 | 8.78e-12 | 67.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387090 | I3SSI6 | 96.053 | 152 | 6 | 0 | 94 | 245 | 1 | 152 | 5.35e-102 | 302 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0383540 | Msa0387090 | 0.858824 | 6.316862e-63 | -8.615850e-47 |
| Msa0387090 | Msa0387110 | 0.909951 | 3.225012e-82 | -8.615850e-47 |
| Msa0387090 | Msa0433880 | 0.840474 | 8.507732e-58 | -8.615850e-47 |
| Msa0387090 | Msa0477790 | 0.830016 | 3.723752e-55 | -8.615850e-47 |
| Msa0387090 | Msa0521810 | 0.860346 | 2.202152e-63 | -8.615850e-47 |
| Msa0387090 | Msa0797350 | 0.804618 | 1.981450e-49 | -8.615850e-47 |
| Msa0387090 | Msa1348730 | 0.903531 | 3.150587e-79 | -8.615850e-47 |
| Msa0387090 | Msa1348780 | 0.933334 | 2.199667e-95 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387090 | MtrunA17_Chr3g0140061 | 96.078 | 153 | 6 | 0 | 94 | 246 | 1 | 153 | 3.47e-105 | 308 |
| Msa0387090 | MtrunA17_Chr3g0140061 | 82.759 | 87 | 13 | 1 | 7 | 91 | 153 | 239 | 3.93e-45 | 154 |
| Msa0387090 | MtrunA17_Chr3g0140051 | 96.078 | 153 | 6 | 0 | 94 | 246 | 1 | 153 | 7.86e-105 | 307 |
| Msa0387090 | MtrunA17_Chr3g0140051 | 81.609 | 87 | 14 | 1 | 7 | 91 | 153 | 239 | 2.11e-44 | 152 |
| Msa0387090 | MtrunA17_Chr6g0486081 | 55.932 | 118 | 50 | 1 | 131 | 246 | 29 | 146 | 9.97e-43 | 147 |
| Msa0387090 | MtrunA17_Chr6g0486081 | 49.412 | 85 | 39 | 1 | 7 | 91 | 146 | 226 | 3.74e-23 | 95.9 |
| Msa0387090 | MtrunA17_Chr6g0486101 | 54.237 | 118 | 52 | 1 | 131 | 246 | 30 | 147 | 3.95e-42 | 146 |
| Msa0387090 | MtrunA17_Chr6g0486101 | 47.059 | 85 | 36 | 1 | 7 | 91 | 147 | 222 | 7.71e-19 | 84.0 |
| Msa0387090 | MtrunA17_Chr6g0486091 | 50.847 | 118 | 56 | 1 | 131 | 246 | 31 | 148 | 2.01e-38 | 136 |
| Msa0387090 | MtrunA17_Chr6g0486091 | 44.706 | 85 | 38 | 1 | 7 | 91 | 148 | 223 | 2.45e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0387090 | AT4G28940.1 | 57.627 | 118 | 48 | 1 | 131 | 246 | 33 | 150 | 6.45e-46 | 156 |
| Msa0387090 | AT4G28940.1 | 57.647 | 85 | 30 | 1 | 7 | 91 | 150 | 228 | 2.99e-28 | 110 |
| Msa0387090 | AT4G28940.2 | 57.647 | 85 | 30 | 1 | 7 | 91 | 58 | 136 | 4.22e-29 | 110 |
| Msa0387090 | AT4G28940.2 | 63.793 | 58 | 21 | 0 | 189 | 246 | 1 | 58 | 3.97e-21 | 89.4 |
| Msa0387090 | AT4G24340.1 | 43.103 | 116 | 64 | 1 | 132 | 245 | 43 | 158 | 7.10e-25 | 100 |
| Msa0387090 | AT4G24350.2 | 40.517 | 116 | 67 | 1 | 132 | 245 | 38 | 153 | 4.16e-23 | 95.5 |
| Msa0387090 | AT4G24350.1 | 40.517 | 116 | 67 | 1 | 132 | 245 | 38 | 153 | 5.77e-23 | 95.9 |
Find 57 sgRNAs with CRISPR-Local
Find 268 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACGAAGAGGGTCCTTATT+TGG | 0.132523 | 3_1:-90935031 | Msa0387090:CDS |
| CACAACTCACGAATGCATTT+TGG | 0.147904 | 3_1:+90935091 | None:intergenic |
| ATGTTGCTATTCCACATTAT+TGG | 0.227186 | 3_1:-90934385 | Msa0387090:CDS |
| AACAAAGGCAACATGCTCTT+TGG | 0.272171 | 3_1:-90936131 | Msa0387090:CDS |
| TGTTGCTATTCCACATTATT+GGG | 0.272480 | 3_1:-90934384 | Msa0387090:CDS |
| GGTATGATTAAACCCAAATA+AGG | 0.283272 | 3_1:+90935018 | None:intergenic |
| GGGTCAAGTTCAAAAGAATT+TGG | 0.317467 | 3_1:+90934997 | None:intergenic |
| CTCATTTGGCACTTTGGAGC+TGG | 0.328354 | 3_1:-90934361 | Msa0387090:CDS |
| TCCACATTATTGGGCTCATT+TGG | 0.331452 | 3_1:-90934375 | Msa0387090:CDS |
| TTGGGTATTAAACAACATAA+AGG | 0.346307 | 3_1:+90935110 | None:intergenic |
| AGAGCATGTTGCCTTTGTTC+AGG | 0.348607 | 3_1:+90936135 | None:intergenic |
| AACGAAGAGGGTCCTTATTT+GGG | 0.350130 | 3_1:-90935030 | Msa0387090:CDS |
| ACAACCAACTCAACAATCTA+TGG | 0.372643 | 3_1:-90936194 | Msa0387090:CDS |
| GTTGTTCATTACGGGATTGC+TGG | 0.372697 | 3_1:-90934437 | Msa0387090:CDS |
| TAGATGGAGTTGTTCATTAC+GGG | 0.375885 | 3_1:-90934445 | Msa0387090:CDS |
| CCAACGGGGAAAATCTCTTC+TGG | 0.376793 | 3_1:+90936165 | None:intergenic |
| CCCGTCATGACTAGTATAAC+TGG | 0.382128 | 3_1:+90934627 | None:intergenic |
| AGGTAGTACTTGGAATCAAC+GGG | 0.405005 | 3_1:+90936105 | None:intergenic |
| ATTGGGCTCATTTGGCACTT+TGG | 0.416383 | 3_1:-90934367 | Msa0387090:CDS |
| TGTTCAGGAATGCCACCAAC+GGG | 0.418889 | 3_1:+90936150 | None:intergenic |
| GTAGATGGAGTTGTTCATTA+CGG | 0.424060 | 3_1:-90934446 | Msa0387090:CDS |
| ACAAAGGCAACATGCTCTTT+GGG | 0.425980 | 3_1:-90936130 | Msa0387090:CDS |
| ATTGTATATGTGCAGAGGTA+TGG | 0.431241 | 3_1:-90936330 | Msa0387090:CDS |
| GAAGGAAGGAGATTTCGTTT+TGG | 0.431427 | 3_1:-90934666 | Msa0387090:intron |
| TTTGGCAATAAGGTAGTACT+TGG | 0.451990 | 3_1:+90936095 | None:intergenic |
| GCAAACCCTTCCTTGCATAT+CGG | 0.458109 | 3_1:-90934410 | Msa0387090:CDS |
| TCTAAGGGTAACGTGTCATC+AGG | 0.462269 | 3_1:+90936300 | None:intergenic |
| TTTGGCACTTTGGAGCTGGC+AGG | 0.483139 | 3_1:-90934357 | None:intergenic |
| GGTACCATAGATTGTTGAGT+TGG | 0.488750 | 3_1:+90936190 | None:intergenic |
| GGAGATTACACAAGGGAAGT+AGG | 0.493178 | 3_1:-90936270 | Msa0387090:CDS |
| TTGTATATGTGCAGAGGTAT+GGG | 0.494546 | 3_1:-90936329 | Msa0387090:CDS |
| TTTACATCAAACTTAAGTGC+TGG | 0.499968 | 3_1:-90936228 | Msa0387090:CDS |
| TATAACTGGTTTGTCGCCAA+TGG | 0.510741 | 3_1:+90934641 | None:intergenic |
| GACCCTCTTCTTCAAAATCC+AGG | 0.523176 | 3_1:-90934979 | Msa0387090:CDS |
| AAGGTAGTACTTGGAATCAA+CGG | 0.527662 | 3_1:+90936104 | None:intergenic |
| GAGATTACACAAGGGAAGTA+GGG | 0.535301 | 3_1:-90936269 | Msa0387090:CDS |
| TTGTCACTAGCAGTATAGCC+TGG | 0.553691 | 3_1:+90934961 | None:intergenic |
| ACCAGTTATACTAGTCATGA+CGG | 0.559335 | 3_1:-90934628 | Msa0387090:CDS |
| TTGTTCAGGAATGCCACCAA+CGG | 0.573621 | 3_1:+90936149 | None:intergenic |
| GCCAAATGAGCCCAATAATG+TGG | 0.579248 | 3_1:+90934374 | None:intergenic |
| ACATCTCCGATATGCAAGGA+AGG | 0.579860 | 3_1:+90934404 | None:intergenic |
| CGGGGAAAATCTCTTCTGGT+TGG | 0.595557 | 3_1:+90936169 | None:intergenic |
| CCAGTTATACTAGTCATGAC+GGG | 0.608599 | 3_1:-90934627 | Msa0387090:CDS |
| ATTGCTAAAATCAACGAAGA+GGG | 0.614781 | 3_1:-90935042 | Msa0387090:CDS |
| AGCAACATCTCCGATATGCA+AGG | 0.618530 | 3_1:+90934400 | None:intergenic |
| ATGTGCAGAGGTATGGGCAA+GGG | 0.632644 | 3_1:-90936323 | Msa0387090:CDS |
| AATTGCTAAAATCAACGAAG+AGG | 0.634351 | 3_1:-90935043 | Msa0387090:CDS |
| TATGTGCAGAGGTATGGGCA+AGG | 0.643104 | 3_1:-90936324 | Msa0387090:CDS |
| ACGTTACCCTTAGAAAACAA+TGG | 0.644025 | 3_1:-90936291 | Msa0387090:CDS |
| TTGGTGGCATTCCTGAACAA+AGG | 0.647085 | 3_1:-90936146 | Msa0387090:CDS |
| CATCTCCGATATGCAAGGAA+GGG | 0.651532 | 3_1:+90934405 | None:intergenic |
| TAACGATTGTATATGTGCAG+AGG | 0.653047 | 3_1:-90936335 | Msa0387090:CDS |
| AGTCATGACGGGATTGAGTG+TGG | 0.668616 | 3_1:-90934616 | Msa0387090:intron |
| AAAACAATGGAGATTACACA+AGG | 0.670651 | 3_1:-90936278 | Msa0387090:CDS |
| AAACAATGGAGATTACACAA+GGG | 0.709853 | 3_1:-90936277 | Msa0387090:CDS |
| GTTCAGGAATGCCACCAACG+GGG | 0.730088 | 3_1:+90936151 | None:intergenic |
| GGTAGTACTTGGAATCAACG+GGG | 0.836087 | 3_1:+90936106 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTTATTTTATTTTTTT+TGG | + | chr3_1:90934889-90934908 | None:intergenic | 0.0% |
| !!! | TTATTTTATTTTATTTTTTT+TGG | + | chr3_1:90934889-90934908 | None:intergenic | 0.0% |
| !!! | TTTCATTTAAGATATATTTA+TGG | + | chr3_1:90934671-90934690 | None:intergenic | 10.0% |
| !!! | TTTCATTTAAGATATATTTA+TGG | + | chr3_1:90934671-90934690 | None:intergenic | 10.0% |
| !! | AATATTATAGATTTGTGAAA+TGG | + | chr3_1:90934833-90934852 | None:intergenic | 15.0% |
| !! | AAATAGATAACTTTATATGA+GGG | + | chr3_1:90935152-90935171 | None:intergenic | 15.0% |
| !! | TAAATAGATAACTTTATATG+AGG | + | chr3_1:90935153-90935172 | None:intergenic | 15.0% |
| !! | GACTAAATGATTAATATTTA+TGG | - | chr3_1:90935369-90935388 | Msa0387090:intron | 15.0% |
| !! | TCATATGTATAATTTAATCT+TGG | + | chr3_1:90935813-90935832 | None:intergenic | 15.0% |
| !!! | TAATTTTCCTCTTTTTTTTA+TGG | - | chr3_1:90935997-90936016 | Msa0387090:intron | 15.0% |
| !! | AATATTATAGATTTGTGAAA+TGG | + | chr3_1:90934833-90934852 | None:intergenic | 15.0% |
| !! | AAATAGATAACTTTATATGA+GGG | + | chr3_1:90935152-90935171 | None:intergenic | 15.0% |
| !! | TAAATAGATAACTTTATATG+AGG | + | chr3_1:90935153-90935172 | None:intergenic | 15.0% |
| !! | GACTAAATGATTAATATTTA+TGG | - | chr3_1:90935369-90935388 | Msa0387090:intron | 15.0% |
| !! | TCATATGTATAATTTAATCT+TGG | + | chr3_1:90935813-90935832 | None:intergenic | 15.0% |
| !!! | TAATTTTCCTCTTTTTTTTA+TGG | - | chr3_1:90935997-90936016 | Msa0387090:intron | 15.0% |
| !!! | ATTTATCATCGCAATTTTAA+CGG | + | chr3_1:90934757-90934776 | None:intergenic | 20.0% |
| !! | AATGAATGTTGGAAAATTAA+AGG | + | chr3_1:90934928-90934947 | None:intergenic | 20.0% |
| !! | TTATCTTTCTTTAAATTGCA+AGG | + | chr3_1:90935094-90935113 | None:intergenic | 20.0% |
| !! | AATAGATAACTTTATATGAG+GGG | + | chr3_1:90935151-90935170 | None:intergenic | 20.0% |
| !! | TTTATAGAGAATAGAATGAA+GGG | + | chr3_1:90935453-90935472 | None:intergenic | 20.0% |
| !!! | TTTTATAGAGAATAGAATGA+AGG | + | chr3_1:90935454-90935473 | None:intergenic | 20.0% |
| !! | TGAAATTAATTAACTTTGCA+AGG | - | chr3_1:90935936-90935955 | Msa0387090:intron | 20.0% |
| !! | TTATTAGCCATAAAAAAAAG+AGG | + | chr3_1:90936007-90936026 | None:intergenic | 20.0% |
| !!! | ATTTATCATCGCAATTTTAA+CGG | + | chr3_1:90934757-90934776 | None:intergenic | 20.0% |
| !! | AATGAATGTTGGAAAATTAA+AGG | + | chr3_1:90934928-90934947 | None:intergenic | 20.0% |
| !! | TTATCTTTCTTTAAATTGCA+AGG | + | chr3_1:90935094-90935113 | None:intergenic | 20.0% |
| !! | AATAGATAACTTTATATGAG+GGG | + | chr3_1:90935151-90935170 | None:intergenic | 20.0% |
| !! | TTTATAGAGAATAGAATGAA+GGG | + | chr3_1:90935453-90935472 | None:intergenic | 20.0% |
| !!! | TTTTATAGAGAATAGAATGA+AGG | + | chr3_1:90935454-90935473 | None:intergenic | 20.0% |
| !! | TGAAATTAATTAACTTTGCA+AGG | - | chr3_1:90935936-90935955 | Msa0387090:intron | 20.0% |
| !! | TTATTAGCCATAAAAAAAAG+AGG | + | chr3_1:90936007-90936026 | None:intergenic | 20.0% |
| !! | TAATCTCCATTGTTTTCTAA+GGG | + | chr3_1:90934412-90934431 | None:intergenic | 25.0% |
| !!! | ATTACATACCTCTAGTTTTT+TGG | + | chr3_1:90934620-90934639 | None:intergenic | 25.0% |
| !! | CTAGAGGTATGTAATTAATT+AGG | - | chr3_1:90934625-90934644 | Msa0387090:CDS | 25.0% |
| !! | CTTTATTTCTTTCTCTCTTA+AGG | - | chr3_1:90935018-90935037 | Msa0387090:CDS | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | + | chr3_1:90935211-90935230 | None:intergenic | 25.0% |
| ! | TTGGGTATTAAACAACATAA+AGG | + | chr3_1:90935587-90935606 | None:intergenic | 25.0% |
| !! | TAATCTTGGTCCTTTTAAAT+GGG | + | chr3_1:90935799-90935818 | None:intergenic | 25.0% |
| !! | TTAATCTTGGTCCTTTTAAA+TGG | + | chr3_1:90935800-90935819 | None:intergenic | 25.0% |
| ! | GCTCTAGTTAAAATAAACTT+TGG | + | chr3_1:90935841-90935860 | None:intergenic | 25.0% |
| ! | TCAGTGAAGATTTGTAAATT+AGG | + | chr3_1:90935887-90935906 | None:intergenic | 25.0% |
| !!! | TCATTGTTATTTTCTGTTGA+TGG | + | chr3_1:90935919-90935938 | None:intergenic | 25.0% |
| !!! | TTTTTTATGGCTAATAACGA+AGG | - | chr3_1:90936010-90936029 | Msa0387090:intron | 25.0% |
| !!! | TTAAGCTTTTTCAAAGTAGA+TGG | - | chr3_1:90936233-90936252 | Msa0387090:CDS | 25.0% |
| !! | TAATCTCCATTGTTTTCTAA+GGG | + | chr3_1:90934412-90934431 | None:intergenic | 25.0% |
| !!! | ATTACATACCTCTAGTTTTT+TGG | + | chr3_1:90934620-90934639 | None:intergenic | 25.0% |
| !! | CTAGAGGTATGTAATTAATT+AGG | - | chr3_1:90934625-90934644 | Msa0387090:CDS | 25.0% |
| !! | CTTTATTTCTTTCTCTCTTA+AGG | - | chr3_1:90935018-90935037 | Msa0387090:CDS | 25.0% |
| ! | GATAATGCATAATATATGCA+AGG | + | chr3_1:90935211-90935230 | None:intergenic | 25.0% |
| ! | TTGGGTATTAAACAACATAA+AGG | + | chr3_1:90935587-90935606 | None:intergenic | 25.0% |
| !! | TAATCTTGGTCCTTTTAAAT+GGG | + | chr3_1:90935799-90935818 | None:intergenic | 25.0% |
| !! | TTAATCTTGGTCCTTTTAAA+TGG | + | chr3_1:90935800-90935819 | None:intergenic | 25.0% |
| ! | GCTCTAGTTAAAATAAACTT+TGG | + | chr3_1:90935841-90935860 | None:intergenic | 25.0% |
| ! | TCAGTGAAGATTTGTAAATT+AGG | + | chr3_1:90935887-90935906 | None:intergenic | 25.0% |
| !!! | TCATTGTTATTTTCTGTTGA+TGG | + | chr3_1:90935919-90935938 | None:intergenic | 25.0% |
| !!! | TTTTTTATGGCTAATAACGA+AGG | - | chr3_1:90936010-90936029 | Msa0387090:intron | 25.0% |
| !!! | TTAAGCTTTTTCAAAGTAGA+TGG | - | chr3_1:90936233-90936252 | Msa0387090:CDS | 25.0% |
| ! | GTAATCTCCATTGTTTTCTA+AGG | + | chr3_1:90934413-90934432 | None:intergenic | 30.0% |
| AAAACAATGGAGATTACACA+AGG | - | chr3_1:90934416-90934435 | Msa0387090:CDS | 30.0% | |
| AAACAATGGAGATTACACAA+GGG | - | chr3_1:90934417-90934436 | Msa0387090:CDS | 30.0% | |
| TTTACATCAAACTTAAGTGC+TGG | - | chr3_1:90934466-90934485 | Msa0387090:CDS | 30.0% | |
| ! | GCTTTTAAATCAAAGAACGT+AGG | + | chr3_1:90934803-90934822 | None:intergenic | 30.0% |
| TTTCTTTAAATTGCAAGGTG+GGG | + | chr3_1:90935089-90935108 | None:intergenic | 30.0% | |
| CTTTCTTTAAATTGCAAGGT+GGG | + | chr3_1:90935090-90935109 | None:intergenic | 30.0% | |
| TCTTTCTTTAAATTGCAAGG+TGG | + | chr3_1:90935091-90935110 | None:intergenic | 30.0% | |
| TATCAACTGAGTTAAGTTCA+CGG | - | chr3_1:90935233-90935252 | Msa0387090:intron | 30.0% | |
| ACAGAAAATACTAACTCCTA+CGG | - | chr3_1:90935400-90935419 | Msa0387090:intron | 30.0% | |
| TCTATAAAAACCAACCCATT+AGG | - | chr3_1:90935465-90935484 | Msa0387090:intron | 30.0% | |
| TATAGGAAGACAAGAAATGA+AGG | + | chr3_1:90935492-90935511 | None:intergenic | 30.0% | |
| AATTGCTAAAATCAACGAAG+AGG | - | chr3_1:90935651-90935670 | Msa0387090:intron | 30.0% | |
| ATTGCTAAAATCAACGAAGA+GGG | - | chr3_1:90935652-90935671 | Msa0387090:intron | 30.0% | |
| GGTATGATTAAACCCAAATA+AGG | + | chr3_1:90935679-90935698 | None:intergenic | 30.0% | |
| GTGAAGATTTGTAAATTAGG+TGG | + | chr3_1:90935884-90935903 | None:intergenic | 30.0% | |
| ! | ATGTTGCTATTCCACATTAT+TGG | - | chr3_1:90936309-90936328 | Msa0387090:CDS | 30.0% |
| ! | TGTTGCTATTCCACATTATT+GGG | - | chr3_1:90936310-90936329 | Msa0387090:CDS | 30.0% |
| ! | GTAATCTCCATTGTTTTCTA+AGG | + | chr3_1:90934413-90934432 | None:intergenic | 30.0% |
| AAAACAATGGAGATTACACA+AGG | - | chr3_1:90934416-90934435 | Msa0387090:CDS | 30.0% | |
| AAACAATGGAGATTACACAA+GGG | - | chr3_1:90934417-90934436 | Msa0387090:CDS | 30.0% | |
| TTTACATCAAACTTAAGTGC+TGG | - | chr3_1:90934466-90934485 | Msa0387090:CDS | 30.0% | |
| ! | GCTTTTAAATCAAAGAACGT+AGG | + | chr3_1:90934803-90934822 | None:intergenic | 30.0% |
| TTTCTTTAAATTGCAAGGTG+GGG | + | chr3_1:90935089-90935108 | None:intergenic | 30.0% | |
| CTTTCTTTAAATTGCAAGGT+GGG | + | chr3_1:90935090-90935109 | None:intergenic | 30.0% | |
| TCTTTCTTTAAATTGCAAGG+TGG | + | chr3_1:90935091-90935110 | None:intergenic | 30.0% | |
| TATCAACTGAGTTAAGTTCA+CGG | - | chr3_1:90935233-90935252 | Msa0387090:intron | 30.0% | |
| ACAGAAAATACTAACTCCTA+CGG | - | chr3_1:90935400-90935419 | Msa0387090:intron | 30.0% | |
| TCTATAAAAACCAACCCATT+AGG | - | chr3_1:90935465-90935484 | Msa0387090:intron | 30.0% | |
| TATAGGAAGACAAGAAATGA+AGG | + | chr3_1:90935492-90935511 | None:intergenic | 30.0% | |
| AATTGCTAAAATCAACGAAG+AGG | - | chr3_1:90935651-90935670 | Msa0387090:intron | 30.0% | |
| ATTGCTAAAATCAACGAAGA+GGG | - | chr3_1:90935652-90935671 | Msa0387090:intron | 30.0% | |
| GGTATGATTAAACCCAAATA+AGG | + | chr3_1:90935679-90935698 | None:intergenic | 30.0% | |
| GTGAAGATTTGTAAATTAGG+TGG | + | chr3_1:90935884-90935903 | None:intergenic | 30.0% | |
| ! | ATGTTGCTATTCCACATTAT+TGG | - | chr3_1:90936309-90936328 | Msa0387090:CDS | 30.0% |
| ! | TGTTGCTATTCCACATTATT+GGG | - | chr3_1:90936310-90936329 | Msa0387090:CDS | 30.0% |
| TAACGATTGTATATGTGCAG+AGG | - | chr3_1:90934359-90934378 | Msa0387090:CDS | 35.0% | |
| ATTGTATATGTGCAGAGGTA+TGG | - | chr3_1:90934364-90934383 | Msa0387090:CDS | 35.0% | |
| ! | TTGTATATGTGCAGAGGTAT+GGG | - | chr3_1:90934365-90934384 | Msa0387090:CDS | 35.0% |
| ACGTTACCCTTAGAAAACAA+TGG | - | chr3_1:90934403-90934422 | Msa0387090:CDS | 35.0% | |
| ACAACCAACTCAACAATCTA+TGG | - | chr3_1:90934500-90934519 | Msa0387090:intron | 35.0% | |
| AAGGTAGTACTTGGAATCAA+CGG | + | chr3_1:90934593-90934612 | None:intergenic | 35.0% | |
| TTTGGCAATAAGGTAGTACT+TGG | + | chr3_1:90934602-90934621 | None:intergenic | 35.0% | |
| !!! | CCTCTAGTTTTTTGGCAATA+AGG | + | chr3_1:90934612-90934631 | None:intergenic | 35.0% |
| CCTTATTGCCAAAAAACTAG+AGG | - | chr3_1:90934609-90934628 | Msa0387090:intron | 35.0% | |
| GGTATGTAATTAATTAGGCC+TGG | - | chr3_1:90934630-90934649 | Msa0387090:CDS | 35.0% | |
| TGGTATAGTAGTTTGAATCC+AGG | + | chr3_1:90934651-90934670 | None:intergenic | 35.0% | |
| GTTGAGTGATGAATGAATGT+TGG | + | chr3_1:90934939-90934958 | None:intergenic | 35.0% | |
| TAACTAGAACAACGTTTACG+TGG | - | chr3_1:90935259-90935278 | Msa0387090:intron | 35.0% | |
| CAAGAAATGAAGGACCTAAT+GGG | + | chr3_1:90935482-90935501 | None:intergenic | 35.0% | |
| ACAAGAAATGAAGGACCTAA+TGG | + | chr3_1:90935483-90935502 | None:intergenic | 35.0% | |
| TGTCTGGGTGTAGATAAAAA+TGG | - | chr3_1:90935519-90935538 | Msa0387090:intron | 35.0% | |
| ATAAAAATGGCAGCTACTCA+TGG | - | chr3_1:90935532-90935551 | Msa0387090:intron | 35.0% | |
| TAAAAATGGCAGCTACTCAT+GGG | - | chr3_1:90935533-90935552 | Msa0387090:intron | 35.0% | |
| ! | ACAACTCACGAATGCATTTT+GGG | + | chr3_1:90935605-90935624 | None:intergenic | 35.0% |
| GGGTCAAGTTCAAAAGAATT+TGG | + | chr3_1:90935700-90935719 | None:intergenic | 35.0% | |
| ! | GACAACATCATAGATTTTGC+AGG | - | chr3_1:90935751-90935770 | Msa0387090:intron | 35.0% |
| TTATGGCTAATAACGAAGGA+AGG | - | chr3_1:90936014-90936033 | Msa0387090:intron | 35.0% | |
| !! | AGATTTCGTTTTGGATCCAT+TGG | - | chr3_1:90936037-90936056 | Msa0387090:intron | 35.0% |
| ACCAGTTATACTAGTCATGA+CGG | - | chr3_1:90936066-90936085 | Msa0387090:intron | 35.0% | |
| GTAGATGGAGTTGTTCATTA+CGG | - | chr3_1:90936248-90936267 | Msa0387090:CDS | 35.0% | |
| TAGATGGAGTTGTTCATTAC+GGG | - | chr3_1:90936249-90936268 | Msa0387090:CDS | 35.0% | |
| TAACGATTGTATATGTGCAG+AGG | - | chr3_1:90934359-90934378 | Msa0387090:CDS | 35.0% | |
| ATTGTATATGTGCAGAGGTA+TGG | - | chr3_1:90934364-90934383 | Msa0387090:CDS | 35.0% | |
| ! | TTGTATATGTGCAGAGGTAT+GGG | - | chr3_1:90934365-90934384 | Msa0387090:CDS | 35.0% |
| ACGTTACCCTTAGAAAACAA+TGG | - | chr3_1:90934403-90934422 | Msa0387090:CDS | 35.0% | |
| ACAACCAACTCAACAATCTA+TGG | - | chr3_1:90934500-90934519 | Msa0387090:intron | 35.0% | |
| AAGGTAGTACTTGGAATCAA+CGG | + | chr3_1:90934593-90934612 | None:intergenic | 35.0% | |
| TTTGGCAATAAGGTAGTACT+TGG | + | chr3_1:90934602-90934621 | None:intergenic | 35.0% | |
| !!! | CCTCTAGTTTTTTGGCAATA+AGG | + | chr3_1:90934612-90934631 | None:intergenic | 35.0% |
| CCTTATTGCCAAAAAACTAG+AGG | - | chr3_1:90934609-90934628 | Msa0387090:intron | 35.0% | |
| GGTATGTAATTAATTAGGCC+TGG | - | chr3_1:90934630-90934649 | Msa0387090:CDS | 35.0% | |
| TGGTATAGTAGTTTGAATCC+AGG | + | chr3_1:90934651-90934670 | None:intergenic | 35.0% | |
| GTTGAGTGATGAATGAATGT+TGG | + | chr3_1:90934939-90934958 | None:intergenic | 35.0% | |
| TAACTAGAACAACGTTTACG+TGG | - | chr3_1:90935259-90935278 | Msa0387090:intron | 35.0% | |
| CAAGAAATGAAGGACCTAAT+GGG | + | chr3_1:90935482-90935501 | None:intergenic | 35.0% | |
| ACAAGAAATGAAGGACCTAA+TGG | + | chr3_1:90935483-90935502 | None:intergenic | 35.0% | |
| TGTCTGGGTGTAGATAAAAA+TGG | - | chr3_1:90935519-90935538 | Msa0387090:intron | 35.0% | |
| ATAAAAATGGCAGCTACTCA+TGG | - | chr3_1:90935532-90935551 | Msa0387090:intron | 35.0% | |
| TAAAAATGGCAGCTACTCAT+GGG | - | chr3_1:90935533-90935552 | Msa0387090:intron | 35.0% | |
| ! | ACAACTCACGAATGCATTTT+GGG | + | chr3_1:90935605-90935624 | None:intergenic | 35.0% |
| GGGTCAAGTTCAAAAGAATT+TGG | + | chr3_1:90935700-90935719 | None:intergenic | 35.0% | |
| ! | GACAACATCATAGATTTTGC+AGG | - | chr3_1:90935751-90935770 | Msa0387090:intron | 35.0% |
| TTATGGCTAATAACGAAGGA+AGG | - | chr3_1:90936014-90936033 | Msa0387090:intron | 35.0% | |
| !! | AGATTTCGTTTTGGATCCAT+TGG | - | chr3_1:90936037-90936056 | Msa0387090:intron | 35.0% |
| ACCAGTTATACTAGTCATGA+CGG | - | chr3_1:90936066-90936085 | Msa0387090:intron | 35.0% | |
| GTAGATGGAGTTGTTCATTA+CGG | - | chr3_1:90936248-90936267 | Msa0387090:CDS | 35.0% | |
| TAGATGGAGTTGTTCATTAC+GGG | - | chr3_1:90936249-90936268 | Msa0387090:CDS | 35.0% | |
| GAGATTACACAAGGGAAGTA+GGG | - | chr3_1:90934425-90934444 | Msa0387090:CDS | 40.0% | |
| GGTACCATAGATTGTTGAGT+TGG | + | chr3_1:90934507-90934526 | None:intergenic | 40.0% | |
| AACAAAGGCAACATGCTCTT+TGG | - | chr3_1:90934563-90934582 | Msa0387090:intron | 40.0% | |
| ACAAAGGCAACATGCTCTTT+GGG | - | chr3_1:90934564-90934583 | Msa0387090:intron | 40.0% | |
| AGGTAGTACTTGGAATCAAC+GGG | + | chr3_1:90934592-90934611 | None:intergenic | 40.0% | |
| ! | AAATGAAGGACCTAATGGGT+TGG | + | chr3_1:90935478-90935497 | None:intergenic | 40.0% |
| TTCCTATATTGCGTGTGTCT+GGG | - | chr3_1:90935504-90935523 | Msa0387090:intron | 40.0% | |
| ! | CACAACTCACGAATGCATTT+TGG | + | chr3_1:90935606-90935625 | None:intergenic | 40.0% |
| ! | AACGAAGAGGGTCCTTATTT+GGG | - | chr3_1:90935664-90935683 | Msa0387090:intron | 40.0% |
| !! | AGCCTGGATTTTGAAGAAGA+GGG | + | chr3_1:90935720-90935739 | None:intergenic | 40.0% |
| !! | TAGCCTGGATTTTGAAGAAG+AGG | + | chr3_1:90935721-90935740 | None:intergenic | 40.0% |
| TCTATTCCGGCCCATTTAAA+AGG | - | chr3_1:90935786-90935805 | Msa0387090:intron | 40.0% | |
| ! | GAAGGAAGGAGATTTCGTTT+TGG | - | chr3_1:90936028-90936047 | Msa0387090:intron | 40.0% |
| !! | TATAACTGGTTTGTCGCCAA+TGG | + | chr3_1:90936056-90936075 | None:intergenic | 40.0% |
| CCAGTTATACTAGTCATGAC+GGG | - | chr3_1:90936067-90936086 | Msa0387090:intron | 40.0% | |
| TCCACATTATTGGGCTCATT+TGG | - | chr3_1:90936319-90936338 | Msa0387090:CDS | 40.0% | |
| GAGATTACACAAGGGAAGTA+GGG | - | chr3_1:90934425-90934444 | Msa0387090:CDS | 40.0% | |
| GGTACCATAGATTGTTGAGT+TGG | + | chr3_1:90934507-90934526 | None:intergenic | 40.0% | |
| AACAAAGGCAACATGCTCTT+TGG | - | chr3_1:90934563-90934582 | Msa0387090:intron | 40.0% | |
| ACAAAGGCAACATGCTCTTT+GGG | - | chr3_1:90934564-90934583 | Msa0387090:intron | 40.0% | |
| AGGTAGTACTTGGAATCAAC+GGG | + | chr3_1:90934592-90934611 | None:intergenic | 40.0% | |
| ! | AAATGAAGGACCTAATGGGT+TGG | + | chr3_1:90935478-90935497 | None:intergenic | 40.0% |
| TTCCTATATTGCGTGTGTCT+GGG | - | chr3_1:90935504-90935523 | Msa0387090:intron | 40.0% | |
| ! | CACAACTCACGAATGCATTT+TGG | + | chr3_1:90935606-90935625 | None:intergenic | 40.0% |
| ! | AACGAAGAGGGTCCTTATTT+GGG | - | chr3_1:90935664-90935683 | Msa0387090:intron | 40.0% |
| !! | AGCCTGGATTTTGAAGAAGA+GGG | + | chr3_1:90935720-90935739 | None:intergenic | 40.0% |
| !! | TAGCCTGGATTTTGAAGAAG+AGG | + | chr3_1:90935721-90935740 | None:intergenic | 40.0% |
| TCTATTCCGGCCCATTTAAA+AGG | - | chr3_1:90935786-90935805 | Msa0387090:intron | 40.0% | |
| ! | GAAGGAAGGAGATTTCGTTT+TGG | - | chr3_1:90936028-90936047 | Msa0387090:intron | 40.0% |
| !! | TATAACTGGTTTGTCGCCAA+TGG | + | chr3_1:90936056-90936075 | None:intergenic | 40.0% |
| CCAGTTATACTAGTCATGAC+GGG | - | chr3_1:90936067-90936086 | Msa0387090:intron | 40.0% | |
| TCCACATTATTGGGCTCATT+TGG | - | chr3_1:90936319-90936338 | Msa0387090:CDS | 40.0% | |
| TCTAAGGGTAACGTGTCATC+AGG | + | chr3_1:90934397-90934416 | None:intergenic | 45.0% | |
| GGAGATTACACAAGGGAAGT+AGG | - | chr3_1:90934424-90934443 | Msa0387090:CDS | 45.0% | |
| TTGTTCAGGAATGCCACCAA+CGG | + | chr3_1:90934548-90934567 | None:intergenic | 45.0% | |
| ! | TTGGTGGCATTCCTGAACAA+AGG | - | chr3_1:90934548-90934567 | Msa0387090:intron | 45.0% |
| AGAGCATGTTGCCTTTGTTC+AGG | + | chr3_1:90934562-90934581 | None:intergenic | 45.0% | |
| GGTAGTACTTGGAATCAACG+GGG | + | chr3_1:90934591-90934610 | None:intergenic | 45.0% | |
| CTTCCTATATTGCGTGTGTC+TGG | - | chr3_1:90935503-90935522 | Msa0387090:intron | 45.0% | |
| CAACGAAGAGGGTCCTTATT+TGG | - | chr3_1:90935663-90935682 | Msa0387090:intron | 45.0% | |
| GACCCTCTTCTTCAAAATCC+AGG | - | chr3_1:90935715-90935734 | Msa0387090:intron | 45.0% | |
| TTGTCACTAGCAGTATAGCC+TGG | + | chr3_1:90935736-90935755 | None:intergenic | 45.0% | |
| GTAAGTGCATGCGTCTATTC+CGG | - | chr3_1:90935773-90935792 | Msa0387090:intron | 45.0% | |
| ! | CTTGGTCCTTTTAAATGGGC+CGG | + | chr3_1:90935795-90935814 | None:intergenic | 45.0% |
| AGAGCTGCACCTAGTAAACA+AGG | - | chr3_1:90935856-90935875 | Msa0387090:intron | 45.0% | |
| GAGCTGCACCTAGTAAACAA+GGG | - | chr3_1:90935857-90935876 | Msa0387090:intron | 45.0% | |
| ! | TAGGTGGTCCCTTGTTTACT+AGG | + | chr3_1:90935868-90935887 | None:intergenic | 45.0% |
| CCCGTCATGACTAGTATAAC+TGG | + | chr3_1:90936070-90936089 | None:intergenic | 45.0% | |
| GTTGTTCATTACGGGATTGC+TGG | - | chr3_1:90936257-90936276 | Msa0387090:CDS | 45.0% | |
| GCAAACCCTTCCTTGCATAT+CGG | - | chr3_1:90936284-90936303 | Msa0387090:CDS | 45.0% | |
| CATCTCCGATATGCAAGGAA+GGG | + | chr3_1:90936292-90936311 | None:intergenic | 45.0% | |
| ACATCTCCGATATGCAAGGA+AGG | + | chr3_1:90936293-90936312 | None:intergenic | 45.0% | |
| AGCAACATCTCCGATATGCA+AGG | + | chr3_1:90936297-90936316 | None:intergenic | 45.0% | |
| GCCAAATGAGCCCAATAATG+TGG | + | chr3_1:90936323-90936342 | None:intergenic | 45.0% | |
| ATTGGGCTCATTTGGCACTT+TGG | - | chr3_1:90936327-90936346 | Msa0387090:CDS | 45.0% | |
| TCTAAGGGTAACGTGTCATC+AGG | + | chr3_1:90934397-90934416 | None:intergenic | 45.0% | |
| GGAGATTACACAAGGGAAGT+AGG | - | chr3_1:90934424-90934443 | Msa0387090:CDS | 45.0% | |
| TTGTTCAGGAATGCCACCAA+CGG | + | chr3_1:90934548-90934567 | None:intergenic | 45.0% | |
| ! | TTGGTGGCATTCCTGAACAA+AGG | - | chr3_1:90934548-90934567 | Msa0387090:intron | 45.0% |
| AGAGCATGTTGCCTTTGTTC+AGG | + | chr3_1:90934562-90934581 | None:intergenic | 45.0% | |
| GGTAGTACTTGGAATCAACG+GGG | + | chr3_1:90934591-90934610 | None:intergenic | 45.0% | |
| CTTCCTATATTGCGTGTGTC+TGG | - | chr3_1:90935503-90935522 | Msa0387090:intron | 45.0% | |
| CAACGAAGAGGGTCCTTATT+TGG | - | chr3_1:90935663-90935682 | Msa0387090:intron | 45.0% | |
| GACCCTCTTCTTCAAAATCC+AGG | - | chr3_1:90935715-90935734 | Msa0387090:intron | 45.0% | |
| TTGTCACTAGCAGTATAGCC+TGG | + | chr3_1:90935736-90935755 | None:intergenic | 45.0% | |
| GTAAGTGCATGCGTCTATTC+CGG | - | chr3_1:90935773-90935792 | Msa0387090:intron | 45.0% | |
| ! | CTTGGTCCTTTTAAATGGGC+CGG | + | chr3_1:90935795-90935814 | None:intergenic | 45.0% |
| AGAGCTGCACCTAGTAAACA+AGG | - | chr3_1:90935856-90935875 | Msa0387090:intron | 45.0% | |
| GAGCTGCACCTAGTAAACAA+GGG | - | chr3_1:90935857-90935876 | Msa0387090:intron | 45.0% | |
| ! | TAGGTGGTCCCTTGTTTACT+AGG | + | chr3_1:90935868-90935887 | None:intergenic | 45.0% |
| CCCGTCATGACTAGTATAAC+TGG | + | chr3_1:90936070-90936089 | None:intergenic | 45.0% | |
| GTTGTTCATTACGGGATTGC+TGG | - | chr3_1:90936257-90936276 | Msa0387090:CDS | 45.0% | |
| GCAAACCCTTCCTTGCATAT+CGG | - | chr3_1:90936284-90936303 | Msa0387090:CDS | 45.0% | |
| CATCTCCGATATGCAAGGAA+GGG | + | chr3_1:90936292-90936311 | None:intergenic | 45.0% | |
| ACATCTCCGATATGCAAGGA+AGG | + | chr3_1:90936293-90936312 | None:intergenic | 45.0% | |
| AGCAACATCTCCGATATGCA+AGG | + | chr3_1:90936297-90936316 | None:intergenic | 45.0% | |
| GCCAAATGAGCCCAATAATG+TGG | + | chr3_1:90936323-90936342 | None:intergenic | 45.0% | |
| ATTGGGCTCATTTGGCACTT+TGG | - | chr3_1:90936327-90936346 | Msa0387090:CDS | 45.0% | |
| !! | GATTATTTAATATTAATTAT+TGG | - | chr3_1:90936125-90936144 | Msa0387090:CDS | 5.0% |
| !! | GATTATTTAATATTAATTAT+TGG | - | chr3_1:90936125-90936144 | Msa0387090:CDS | 5.0% |
| ! | TATGTGCAGAGGTATGGGCA+AGG | - | chr3_1:90934370-90934389 | Msa0387090:CDS | 50.0% |
| ! | ATGTGCAGAGGTATGGGCAA+GGG | - | chr3_1:90934371-90934390 | Msa0387090:CDS | 50.0% |
| CGGGGAAAATCTCTTCTGGT+TGG | + | chr3_1:90934528-90934547 | None:intergenic | 50.0% | |
| CCAACGGGGAAAATCTCTTC+TGG | + | chr3_1:90934532-90934551 | None:intergenic | 50.0% | |
| ! | CCAGAAGAGATTTTCCCCGT+TGG | - | chr3_1:90934529-90934548 | Msa0387090:intron | 50.0% |
| ! | GAAGAGATTTTCCCCGTTGG+TGG | - | chr3_1:90934532-90934551 | Msa0387090:intron | 50.0% |
| TGTTCAGGAATGCCACCAAC+GGG | + | chr3_1:90934547-90934566 | None:intergenic | 50.0% | |
| AGAATGAAGGGTAACCCCCT+TGG | + | chr3_1:90935441-90935460 | None:intergenic | 50.0% | |
| CACCCAGACACACGCAATAT+AGG | + | chr3_1:90935509-90935528 | None:intergenic | 50.0% | |
| ! | AGTCATGACGGGATTGAGTG+TGG | - | chr3_1:90936078-90936097 | Msa0387090:intron | 50.0% |
| GGGATTGAGTGTGGTACGTA+TGG | - | chr3_1:90936087-90936106 | Msa0387090:CDS | 50.0% | |
| !! | CTCATTTGGCACTTTGGAGC+TGG | - | chr3_1:90936333-90936352 | Msa0387090:CDS | 50.0% |
| ! | TATGTGCAGAGGTATGGGCA+AGG | - | chr3_1:90934370-90934389 | Msa0387090:CDS | 50.0% |
| ! | ATGTGCAGAGGTATGGGCAA+GGG | - | chr3_1:90934371-90934390 | Msa0387090:CDS | 50.0% |
| CGGGGAAAATCTCTTCTGGT+TGG | + | chr3_1:90934528-90934547 | None:intergenic | 50.0% | |
| CCAACGGGGAAAATCTCTTC+TGG | + | chr3_1:90934532-90934551 | None:intergenic | 50.0% | |
| ! | CCAGAAGAGATTTTCCCCGT+TGG | - | chr3_1:90934529-90934548 | Msa0387090:intron | 50.0% |
| ! | GAAGAGATTTTCCCCGTTGG+TGG | - | chr3_1:90934532-90934551 | Msa0387090:intron | 50.0% |
| TGTTCAGGAATGCCACCAAC+GGG | + | chr3_1:90934547-90934566 | None:intergenic | 50.0% | |
| AGAATGAAGGGTAACCCCCT+TGG | + | chr3_1:90935441-90935460 | None:intergenic | 50.0% | |
| CACCCAGACACACGCAATAT+AGG | + | chr3_1:90935509-90935528 | None:intergenic | 50.0% | |
| ! | AGTCATGACGGGATTGAGTG+TGG | - | chr3_1:90936078-90936097 | Msa0387090:intron | 50.0% |
| GGGATTGAGTGTGGTACGTA+TGG | - | chr3_1:90936087-90936106 | Msa0387090:CDS | 50.0% | |
| !! | CTCATTTGGCACTTTGGAGC+TGG | - | chr3_1:90936333-90936352 | Msa0387090:CDS | 50.0% |
| GTTCAGGAATGCCACCAACG+GGG | + | chr3_1:90934546-90934565 | None:intergenic | 55.0% | |
| GTTCAGGAATGCCACCAACG+GGG | + | chr3_1:90934546-90934565 | None:intergenic | 55.0% | |
| GCCTAGCCAGACCAAGCCAA+GGG | - | chr3_1:90935422-90935441 | Msa0387090:intron | 60.0% | |
| CCTAGCCAGACCAAGCCAAG+GGG | - | chr3_1:90935423-90935442 | Msa0387090:intron | 60.0% | |
| CTAGCCAGACCAAGCCAAGG+GGG | - | chr3_1:90935424-90935443 | Msa0387090:intron | 60.0% | |
| !! | GTAACCCCCTTGGCTTGGTC+TGG | + | chr3_1:90935431-90935450 | None:intergenic | 60.0% |
| GAAGGGTAACCCCCTTGGCT+TGG | + | chr3_1:90935436-90935455 | None:intergenic | 60.0% | |
| GCCTAGCCAGACCAAGCCAA+GGG | - | chr3_1:90935422-90935441 | Msa0387090:intron | 60.0% | |
| CCTAGCCAGACCAAGCCAAG+GGG | - | chr3_1:90935423-90935442 | Msa0387090:intron | 60.0% | |
| CTAGCCAGACCAAGCCAAGG+GGG | - | chr3_1:90935424-90935443 | Msa0387090:intron | 60.0% | |
| !! | GTAACCCCCTTGGCTTGGTC+TGG | + | chr3_1:90935431-90935450 | None:intergenic | 60.0% |
| GAAGGGTAACCCCCTTGGCT+TGG | + | chr3_1:90935436-90935455 | None:intergenic | 60.0% | |
| GCTTGGTCTGGCTAGGCCGT+AGG | + | chr3_1:90935419-90935438 | None:intergenic | 65.0% | |
| GGCCTAGCCAGACCAAGCCA+AGG | - | chr3_1:90935421-90935440 | Msa0387090:intron | 65.0% | |
| !! | CCCCTTGGCTTGGTCTGGCT+AGG | + | chr3_1:90935426-90935445 | None:intergenic | 65.0% |
| GCTTGGTCTGGCTAGGCCGT+AGG | + | chr3_1:90935419-90935438 | None:intergenic | 65.0% | |
| GGCCTAGCCAGACCAAGCCA+AGG | - | chr3_1:90935421-90935440 | Msa0387090:intron | 65.0% | |
| !! | CCCCTTGGCTTGGTCTGGCT+AGG | + | chr3_1:90935426-90935445 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 90934358 | 90936358 | 90934358 | ID=Msa0387090;Name=Msa0387090 |
| chr3_1 | mRNA | 90934358 | 90936358 | 90934358 | ID=Msa0387090-mRNA-1;Parent=Msa0387090;Name=Msa0387090-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.66|0.5|1|1|1|4|0|246 |
| chr3_1 | exon | 90936086 | 90936358 | 90936086 | ID=Msa0387090-mRNA-1:exon:25253;Parent=Msa0387090-mRNA-1 |
| chr3_1 | exon | 90934944 | 90935184 | 90934944 | ID=Msa0387090-mRNA-1:exon:25252;Parent=Msa0387090-mRNA-1 |
| chr3_1 | exon | 90934617 | 90934684 | 90934617 | ID=Msa0387090-mRNA-1:exon:25251;Parent=Msa0387090-mRNA-1 |
| chr3_1 | exon | 90934358 | 90934513 | 90934358 | ID=Msa0387090-mRNA-1:exon:25250;Parent=Msa0387090-mRNA-1 |
| chr3_1 | CDS | 90936086 | 90936358 | 90936086 | ID=Msa0387090-mRNA-1:cds;Parent=Msa0387090-mRNA-1 |
| chr3_1 | CDS | 90934944 | 90935184 | 90934944 | ID=Msa0387090-mRNA-1:cds;Parent=Msa0387090-mRNA-1 |
| chr3_1 | CDS | 90934617 | 90934684 | 90934617 | ID=Msa0387090-mRNA-1:cds;Parent=Msa0387090-mRNA-1 |
| chr3_1 | CDS | 90934358 | 90934513 | 90934358 | ID=Msa0387090-mRNA-1:cds;Parent=Msa0387090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
