Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383640 | XP_003603610.1 | 95.929 | 565 | 23 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1138 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383640 | sp|Q8LIY8|CCD8B_ORYSJ | 78.261 | 483 | 105 | 0 | 83 | 565 | 83 | 565 | 0.0 | 831 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383640 | G7J3F4 | 95.929 | 565 | 23 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1138 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0383640 | Msa0434010 | 0.924354 | 7.884243e-90 | -8.615850e-47 |
| Msa0383640 | Msa0521870 | 0.901812 | 1.834882e-78 | -8.615850e-47 |
| Msa0383640 | Msa1154320 | 0.818492 | 1.905389e-52 | -8.615850e-47 |
| Msa0383640 | Msa1454190 | 0.915620 | 4.739335e-85 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383640 | MtrunA17_Chr3g0140171 | 95.929 | 565 | 23 | 0 | 1 | 565 | 1 | 565 | 0.0 | 1138 |
| Msa0383640 | MtrunA17_Chr7g0239811 | 96.943 | 458 | 14 | 0 | 108 | 565 | 3 | 460 | 0.0 | 931 |
| Msa0383640 | MtrunA17_Chr7g0239801 | 83.178 | 107 | 18 | 0 | 1 | 107 | 1 | 107 | 3.86e-59 | 193 |
| Msa0383640 | MtrunA17_Chr5g0407931 | 26.253 | 499 | 286 | 23 | 97 | 562 | 160 | 609 | 2.40e-26 | 113 |
| Msa0383640 | MtrunA17_Chr5g0407941 | 26.347 | 501 | 281 | 25 | 98 | 562 | 120 | 568 | 5.95e-26 | 112 |
| Msa0383640 | MtrunA17_Chr5g0407951 | 25.000 | 488 | 305 | 19 | 98 | 562 | 121 | 570 | 5.18e-24 | 106 |
| Msa0383640 | MtrunA17_Chr8g0352261 | 23.715 | 506 | 306 | 21 | 96 | 562 | 100 | 564 | 5.87e-21 | 96.7 |
| Msa0383640 | MtrunA17_Chr2g0312951 | 24.440 | 491 | 306 | 22 | 97 | 562 | 151 | 601 | 8.17e-21 | 96.3 |
| Msa0383640 | MtrunA17_Chr8g0352321 | 24.314 | 510 | 306 | 22 | 96 | 565 | 63 | 532 | 1.06e-19 | 92.8 |
| Msa0383640 | MtrunA17_Chr8g0352301 | 23.622 | 508 | 304 | 22 | 96 | 562 | 100 | 564 | 2.30e-19 | 91.7 |
| Msa0383640 | MtrunA17_Chr8g0376401 | 25.104 | 482 | 310 | 24 | 97 | 562 | 151 | 597 | 1.40e-18 | 89.4 |
| Msa0383640 | MtrunA17_Chr8g0352311 | 23.969 | 509 | 301 | 23 | 96 | 562 | 101 | 565 | 3.90e-17 | 84.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0383640 | AT4G32810.1 | 69.094 | 508 | 149 | 5 | 64 | 564 | 63 | 569 | 0.0 | 756 |
| Msa0383640 | AT4G32810.2 | 65.730 | 534 | 149 | 6 | 64 | 564 | 63 | 595 | 0.0 | 741 |
| Msa0383640 | AT1G30100.1 | 26.550 | 516 | 319 | 22 | 71 | 562 | 101 | 580 | 3.71e-27 | 116 |
| Msa0383640 | AT3G24220.1 | 26.499 | 517 | 319 | 24 | 66 | 562 | 92 | 567 | 7.77e-24 | 105 |
| Msa0383640 | AT3G63520.1 | 25.977 | 512 | 292 | 26 | 96 | 565 | 64 | 530 | 4.07e-22 | 100 |
| Msa0383640 | AT3G14440.1 | 23.413 | 504 | 345 | 19 | 73 | 562 | 113 | 589 | 1.01e-18 | 90.1 |
| Msa0383640 | AT4G18350.1 | 23.938 | 518 | 327 | 24 | 73 | 562 | 96 | 574 | 6.71e-16 | 81.3 |
Find 179 sgRNAs with CRISPR-Local
Find 447 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAACCTTCGCTCATTTAA+TGG | 0.163091 | 3_1:+86642293 | Msa0383640:CDS |
| TACTTCAACCCTAGATAATT+AGG | 0.195998 | 3_1:-86642557 | None:intergenic |
| CCCCATTTCAAAGCAAAATA+TGG | 0.236830 | 3_1:+86638567 | Msa0383640:CDS |
| CAATACCTCAATGGCATTTC+AGG | 0.243692 | 3_1:-86641920 | None:intergenic |
| ATTTGAGTACAGTGATTCTT+TGG | 0.245117 | 3_1:+86641691 | Msa0383640:CDS |
| ATGTAAAATTAGCGATTATA+TGG | 0.248887 | 3_1:+86643302 | Msa0383640:three_prime_UTR |
| ATGCCTTTCCCATGTTCATT+TGG | 0.256695 | 3_1:-86642515 | None:intergenic |
| TGCCTTTCCCATGTTCATTT+GGG | 0.293559 | 3_1:-86642514 | None:intergenic |
| GCCAGAGCTAAGTTCCCTTA+TGG | 0.303157 | 3_1:+86642994 | Msa0383640:CDS |
| CTTCATATGCATTTATGAAA+TGG | 0.332304 | 3_1:-86642181 | None:intergenic |
| TCCCCTATGTTCCACATACC+TGG | 0.339270 | 3_1:-86641329 | None:intergenic |
| CGAAACAAGGGCATCTATAA+AGG | 0.339727 | 3_1:+86638637 | Msa0383640:CDS |
| CCAATTGTCTCCAATGTGTC+GGG | 0.341840 | 3_1:-86641665 | None:intergenic |
| ACTTCAACCCTAGATAATTA+GGG | 0.351152 | 3_1:-86642556 | None:intergenic |
| TCTAATGAGAGGAAGGTTAT+TGG | 0.352894 | 3_1:+86641821 | Msa0383640:CDS |
| GACTGTTGTCATTATCGTAT+TGG | 0.353383 | 3_1:+86643073 | Msa0383640:three_prime_UTR |
| AAGACCTTGGTAAGGGTGTT+GGG | 0.358257 | 3_1:-86642623 | None:intergenic |
| CATATGGATTGCATGGATGC+TGG | 0.364734 | 3_1:+86643022 | Msa0383640:CDS |
| TGTCTGACGGAGACACAAAA+AGG | 0.364914 | 3_1:+86641626 | Msa0383640:CDS |
| CTAGTATCTCTCAAGAGAAA+TGG | 0.369443 | 3_1:+86638788 | Msa0383640:CDS |
| TTCCCTTATGGACTTCCATA+TGG | 0.378303 | 3_1:+86643006 | Msa0383640:CDS |
| ATGGGGTTTCGTATTATAGA+TGG | 0.382685 | 3_1:-86638550 | None:intergenic |
| ACATGCTTGATAACACTTGT+AGG | 0.384774 | 3_1:+86638599 | Msa0383640:CDS |
| TTATTGGACGGGTCGATTGT+AGG | 0.384903 | 3_1:+86641837 | Msa0383640:CDS |
| TATTGGACGGGTCGATTGTA+GGG | 0.385865 | 3_1:+86641838 | Msa0383640:CDS |
| AGCATAAACCCTAATTATCT+AGG | 0.402596 | 3_1:+86642548 | Msa0383640:CDS |
| TAATTTATCATATTCCGTTA+TGG | 0.406589 | 3_1:-86643212 | None:intergenic |
| CACGCCTGTGTTGGCATTGT+CGG | 0.410914 | 3_1:-86641576 | None:intergenic |
| TTTGAGTACAGTGATTCTTT+GGG | 0.419607 | 3_1:+86641692 | Msa0383640:CDS |
| CATAACATGCATAAAAGCTT+TGG | 0.420483 | 3_1:-86642005 | None:intergenic |
| AAATGGAGAAGGATATGCTT+TGG | 0.421784 | 3_1:+86642942 | Msa0383640:CDS |
| CCCGACACATTGGAGACAAT+TGG | 0.425582 | 3_1:+86641665 | Msa0383640:CDS |
| GCTGCTTCTAATGTTCCATA+TGG | 0.430345 | 3_1:-86642485 | None:intergenic |
| GGGCGGTACATCACCCGGTT+GGG | 0.432763 | 3_1:+86641859 | Msa0383640:CDS |
| GTCGGCCTTCACTTCGAGGA+CGG | 0.433069 | 3_1:+86641392 | Msa0383640:CDS |
| TAGTATCTCTCAAGAGAAAT+GGG | 0.438986 | 3_1:+86638789 | Msa0383640:CDS |
| AACTTCAGGCATCTCTTTGA+CGG | 0.439182 | 3_1:+86641356 | Msa0383640:CDS |
| TCCTCTGTTGCTCCTGGTCG+AGG | 0.440338 | 3_1:-86642800 | None:intergenic |
| ATAACATAGTGTTCAGTAAC+GGG | 0.440855 | 3_1:-86641893 | None:intergenic |
| TATGAAGAGGAAGATGAAGA+TGG | 0.442587 | 3_1:+86642197 | Msa0383640:CDS |
| CCACTGGATGGAAGTCCATA+TGG | 0.442857 | 3_1:+86642470 | Msa0383640:CDS |
| TCGGCCTTCACTTCGAGGAC+GGG | 0.453191 | 3_1:+86641393 | Msa0383640:CDS |
| TGTGTCGGGGTCTATCACTA+TGG | 0.455071 | 3_1:-86641651 | None:intergenic |
| TCCAATTGTCTCCAATGTGT+CGG | 0.457857 | 3_1:-86641666 | None:intergenic |
| CTTGGTCGGCCTTCACTTCG+AGG | 0.458257 | 3_1:+86641388 | Msa0383640:CDS |
| AATCCATATGGAAGTCCATA+AGG | 0.458996 | 3_1:-86643009 | None:intergenic |
| ACATAGGGGACTACAACTTC+AGG | 0.459853 | 3_1:+86641342 | Msa0383640:CDS |
| TCATCTTCCTCTGTTGCTCC+TGG | 0.464373 | 3_1:-86642806 | None:intergenic |
| TGGTGAAGCTCGGCGATGGG+AGG | 0.464890 | 3_1:+86641597 | Msa0383640:CDS |
| GCCCAGGTATGTGGAACATA+GGG | 0.467857 | 3_1:+86641327 | Msa0383640:CDS |
| TCCATGCAACATGGTGTTGA+TGG | 0.469071 | 3_1:-86638765 | None:intergenic |
| AATCAGAAAGGGCTAAGAAC+TGG | 0.469124 | 3_1:+86642738 | Msa0383640:CDS |
| TTCGTGGCGAGGATGGAAAC+TGG | 0.475221 | 3_1:+86641797 | Msa0383640:CDS |
| TGAAATTTGTACAATGGAGT+TGG | 0.476527 | 3_1:-86641968 | None:intergenic |
| CAGCATCCATGCAATCCATA+TGG | 0.477535 | 3_1:-86643021 | None:intergenic |
| ATGAAGAGGAAGATGAAGAT+GGG | 0.478254 | 3_1:+86642198 | Msa0383640:CDS |
| GACGGGTACGCCACCTTGGT+CGG | 0.481643 | 3_1:+86641374 | Msa0383640:CDS |
| TGCAGAAAGGAACGTACATA+AGG | 0.482926 | 3_1:+86641300 | Msa0383640:intron |
| AACTCGCTATCCGTGACAAT+GGG | 0.483621 | 3_1:-86641737 | None:intergenic |
| GAAGGAGAACTGCTTGTTCA+AGG | 0.484767 | 3_1:+86638811 | Msa0383640:CDS |
| GGGGCGGTACATCACCCGGT+TGG | 0.485866 | 3_1:+86641858 | Msa0383640:CDS |
| CCATCGGCAAGTTGAATCTC+AGG | 0.486110 | 3_1:+86641430 | Msa0383640:CDS |
| ATTGTGCTCAGAATTTGCTC+AGG | 0.486746 | 3_1:+86641939 | Msa0383640:CDS |
| CAAAATACCTACCTAGCATC+TGG | 0.489402 | 3_1:-86642329 | None:intergenic |
| TGCATAAAAGCTTTGGACTC+AGG | 0.491550 | 3_1:-86641998 | None:intergenic |
| GGGAAAGGAATGGACCCAAC+CGG | 0.491902 | 3_1:-86641873 | None:intergenic |
| AACACAGGCGTGGTGAAGCT+CGG | 0.493828 | 3_1:+86641587 | Msa0383640:CDS |
| TCCATAAGGGAACTTAGCTC+TGG | 0.495616 | 3_1:-86642995 | None:intergenic |
| GGCGTGGTGAAGCTCGGCGA+TGG | 0.496361 | 3_1:+86641593 | Msa0383640:CDS |
| ATATGGATTGCATGGATGCT+GGG | 0.496428 | 3_1:+86643023 | Msa0383640:CDS |
| AAAGACCTTGGTAAGGGTGT+TGG | 0.504729 | 3_1:-86642624 | None:intergenic |
| GGTGAAGCTCGGCGATGGGA+GGG | 0.506441 | 3_1:+86641598 | Msa0383640:CDS |
| ACCATCAACACCATGTTGCA+TGG | 0.507173 | 3_1:+86638764 | Msa0383640:CDS |
| GGACTTCCATATGGATTGCA+TGG | 0.509757 | 3_1:+86643015 | Msa0383640:CDS |
| GGCGGTTAGTAGCCGGCCAT+CGG | 0.511442 | 3_1:+86641414 | Msa0383640:CDS |
| TAAGGAATGGCCCAGGTATG+TGG | 0.512064 | 3_1:+86641318 | Msa0383640:CDS |
| ATCCATATGGAAGTCCATAA+GGG | 0.514145 | 3_1:-86643008 | None:intergenic |
| TGGTCGGTTTAGAATACCAC+TGG | 0.515307 | 3_1:+86642454 | Msa0383640:CDS |
| GCGCTGTGCTCCACAAGCAT+AGG | 0.517620 | 3_1:-86642588 | None:intergenic |
| ACTTCAGGCATCTCTTTGAC+GGG | 0.518526 | 3_1:+86641357 | Msa0383640:CDS |
| AAAATTTCTTAGCCTACGTA+GGG | 0.521712 | 3_1:+86641519 | Msa0383640:CDS |
| AGATTCAACTTGCCGATGGC+CGG | 0.528502 | 3_1:-86641426 | None:intergenic |
| TACAGATATGCCTATGCTTG+TGG | 0.531718 | 3_1:+86642578 | Msa0383640:CDS |
| GACATACAAAGACCTTGGTA+AGG | 0.533022 | 3_1:-86642631 | None:intergenic |
| GAGCTTCACCACGCCTGTGT+TGG | 0.535944 | 3_1:-86641585 | None:intergenic |
| AAACTCGCTATCCGTGACAA+TGG | 0.539476 | 3_1:-86641738 | None:intergenic |
| TAAGTGAGGAACCAGAGAAA+AGG | 0.541857 | 3_1:-86641553 | None:intergenic |
| TTCTGAGCACAATACCTCAA+TGG | 0.542740 | 3_1:-86641929 | None:intergenic |
| GAAGCTCGGCGATGGGAGGG+TGG | 0.544082 | 3_1:+86641601 | Msa0383640:CDS |
| CTTTGACGGGTACGCCACCT+TGG | 0.546670 | 3_1:+86641370 | Msa0383640:CDS |
| AGAGGAAGATGAAGATGGGA+GGG | 0.552579 | 3_1:+86642202 | Msa0383640:CDS |
| AGATCGATCTACAATCAGAA+AGG | 0.553319 | 3_1:+86642726 | Msa0383640:intron |
| GCGTGGTGAAGCTCGGCGAT+GGG | 0.553336 | 3_1:+86641594 | Msa0383640:CDS |
| GTAACGGTCAAGTGATCTTG+AGG | 0.554054 | 3_1:-86638670 | None:intergenic |
| AGGACATATTCCACTCTGGC+TGG | 0.554078 | 3_1:+86638831 | Msa0383640:CDS |
| ATCCCCGACCTTATAAAACC+AGG | 0.554782 | 3_1:+86641770 | Msa0383640:CDS |
| TGAGAGGAAGGTTATTGGAC+GGG | 0.555588 | 3_1:+86641826 | Msa0383640:CDS |
| GGCCCAGGTATGTGGAACAT+AGG | 0.555855 | 3_1:+86641326 | Msa0383640:CDS |
| TGGGAGGGTGGTTTGTCTGA+CGG | 0.556766 | 3_1:+86641613 | Msa0383640:CDS |
| GAGTACAGTGATTCTTTGGG+AGG | 0.556860 | 3_1:+86641695 | Msa0383640:CDS |
| GAGGACGGGCGGTTAGTAGC+CGG | 0.562327 | 3_1:+86641407 | Msa0383640:CDS |
| GATCGATCTACAATCAGAAA+GGG | 0.563093 | 3_1:+86642727 | Msa0383640:intron |
| GCATTAGACCCAAATGAACA+TGG | 0.563212 | 3_1:+86642506 | Msa0383640:CDS |
| AGGGTGTTGGGGAAGTTACA+AGG | 0.564187 | 3_1:-86642611 | None:intergenic |
| TTCAAGGACATATTCCACTC+TGG | 0.567527 | 3_1:+86638827 | Msa0383640:CDS |
| TTTCATAAATGCATATGAAG+AGG | 0.569019 | 3_1:+86642184 | Msa0383640:CDS |
| GTTCAGTAACGGGAAAGGAA+TGG | 0.569137 | 3_1:-86641883 | None:intergenic |
| AACTGGCTCTAATGAGAGGA+AGG | 0.569553 | 3_1:+86641814 | Msa0383640:CDS |
| ACCGCCCGTCCTCGAAGTGA+AGG | 0.571723 | 3_1:-86641397 | None:intergenic |
| ATTGAAATAATAGGGTTGGT+CGG | 0.571946 | 3_1:+86642438 | Msa0383640:intron |
| TCTGGCAATCTCTTCAAAAG+TGG | 0.572064 | 3_1:-86642977 | None:intergenic |
| ATCCTCGCCACGAAGTACCC+TGG | 0.574487 | 3_1:-86641788 | None:intergenic |
| ATTGGACGGGTCGATTGTAG+GGG | 0.575382 | 3_1:+86641839 | Msa0383640:CDS |
| GATTGCTCCACCTCCACCAC+CGG | 0.575723 | 3_1:+86638717 | Msa0383640:CDS |
| TATAAAACCAGGGTACTTCG+TGG | 0.578214 | 3_1:+86641781 | Msa0383640:CDS |
| AAGAGGAAGATGAAGATGGG+AGG | 0.578297 | 3_1:+86642201 | Msa0383640:CDS |
| AGGGTACTTCGTGGCGAGGA+TGG | 0.579122 | 3_1:+86641790 | Msa0383640:CDS |
| TTGTGCTCAGAATTTGCTCA+GGG | 0.579588 | 3_1:+86641940 | Msa0383640:CDS |
| GCATAAACCCTAATTATCTA+GGG | 0.582367 | 3_1:+86642549 | Msa0383640:CDS |
| AGTATATGCGAACAACCACT+AGG | 0.584432 | 3_1:-86643329 | None:intergenic |
| AAGATGTTCTACCAGATGCT+AGG | 0.584562 | 3_1:+86642318 | Msa0383640:CDS |
| GCTAAGAACTGGTATGAAGA+AGG | 0.585069 | 3_1:+86642749 | Msa0383640:CDS |
| CGATTATATGGATTCCCTAG+TGG | 0.585472 | 3_1:+86643314 | Msa0383640:three_prime_UTR |
| GAAAATTTCTTAGCCTACGT+AGG | 0.586815 | 3_1:+86641518 | Msa0383640:CDS |
| CCCCTATGTTCCACATACCT+GGG | 0.587485 | 3_1:-86641328 | None:intergenic |
| ATCTCTCAAGAGAAATGGGA+AGG | 0.587980 | 3_1:+86638793 | Msa0383640:CDS |
| CTCCATTGTACAAATTTCAG+TGG | 0.589016 | 3_1:+86641972 | Msa0383640:CDS |
| AGTGATAGACCCCGACACAT+TGG | 0.593877 | 3_1:+86641655 | Msa0383640:CDS |
| AAAGGAACGTACATAAGGAA+TGG | 0.595708 | 3_1:+86641305 | Msa0383640:CDS |
| CTCGAAGTGAAGGCCGACCA+AGG | 0.599301 | 3_1:-86641387 | None:intergenic |
| AGACCTTGGTAAGGGTGTTG+GGG | 0.601982 | 3_1:-86642622 | None:intergenic |
| CTCTGCACATCCCATTGTCA+CGG | 0.602091 | 3_1:+86641727 | Msa0383640:CDS |
| GGAAAGGAATGGACCCAACC+GGG | 0.602396 | 3_1:-86641872 | None:intergenic |
| ATAGTGTTCAGTAACGGGAA+AGG | 0.603605 | 3_1:-86641888 | None:intergenic |
| GCCTTCACTTCGAGGACGGG+CGG | 0.605814 | 3_1:+86641396 | Msa0383640:CDS |
| TGTAGGGGCGGTACATCACC+CGG | 0.606513 | 3_1:+86641854 | Msa0383640:CDS |
| CGGTTTAGAATACCACTGGA+TGG | 0.607749 | 3_1:+86642458 | Msa0383640:CDS |
| CTTTGCCATTAAATGAGCGA+AGG | 0.609125 | 3_1:-86642298 | None:intergenic |
| AATAACATAGTGTTCAGTAA+CGG | 0.609373 | 3_1:-86641894 | None:intergenic |
| CATGTTATGTGCAAGACTAG+TGG | 0.609567 | 3_1:+86642019 | Msa0383640:CDS |
| GACCCAAATGAACATGGGAA+AGG | 0.610952 | 3_1:+86642512 | Msa0383640:CDS |
| TTGTGCCTGAAATGCCATTG+AGG | 0.611330 | 3_1:+86641915 | Msa0383640:CDS |
| AAATGAACATGGGAAAGGCA+TGG | 0.612023 | 3_1:+86642517 | Msa0383640:CDS |
| GTTTCGTATTATAGATGGTG+AGG | 0.614377 | 3_1:-86638545 | None:intergenic |
| GGAGCAACAGAGGAAGATGA+TGG | 0.616543 | 3_1:+86642809 | Msa0383640:CDS |
| ATGAGAGGAAGGTTATTGGA+CGG | 0.618133 | 3_1:+86641825 | Msa0383640:CDS |
| TGCCACTGAAATTTGTACAA+TGG | 0.622547 | 3_1:-86641974 | None:intergenic |
| GAGGGTGACTGCTGTTATTG+CGG | 0.628329 | 3_1:+86642220 | Msa0383640:CDS |
| AACATGGTGTTGATGGTCGC+CGG | 0.628701 | 3_1:-86638758 | None:intergenic |
| AAGCTGATAGCAATCCATAA+CGG | 0.629383 | 3_1:+86643198 | Msa0383640:three_prime_UTR |
| ACGTACATAAGGAATGGCCC+AGG | 0.629963 | 3_1:+86641311 | Msa0383640:CDS |
| GCCTCGACCAGGAGCAACAG+AGG | 0.630798 | 3_1:+86642799 | Msa0383640:CDS |
| TGGAAACTGGCTCTAATGAG+AGG | 0.631356 | 3_1:+86641810 | Msa0383640:CDS |
| CAATTGTCTCCAATGTGTCG+GGG | 0.633425 | 3_1:-86641664 | None:intergenic |
| AACCAGGGTACTTCGTGGCG+AGG | 0.633536 | 3_1:+86641786 | Msa0383640:CDS |
| TCCCCGACCTTATAAAACCA+GGG | 0.638042 | 3_1:+86641771 | Msa0383640:CDS |
| CCATATGGACTTCCATCCAG+TGG | 0.639234 | 3_1:-86642470 | None:intergenic |
| AAATGGAAAGTAACGAACAA+AGG | 0.641051 | 3_1:-86642164 | None:intergenic |
| AACCCACTCACCAGCCAGAG+TGG | 0.642994 | 3_1:-86638841 | None:intergenic |
| AGATACTAGTCCATGCAACA+TGG | 0.643055 | 3_1:-86638774 | None:intergenic |
| ACATACAAAGACCTTGGTAA+GGG | 0.643165 | 3_1:-86642630 | None:intergenic |
| CCTGAGATTCAACTTGCCGA+TGG | 0.643276 | 3_1:-86641430 | None:intergenic |
| GAGAAAAGTTTAGAGACCAC+CGG | 0.644252 | 3_1:+86638739 | Msa0383640:CDS |
| GGTGGAGCAATCACACGCGA+TGG | 0.648183 | 3_1:-86638706 | None:intergenic |
| CGACAATGCCAACACAGGCG+TGG | 0.649077 | 3_1:+86641577 | Msa0383640:CDS |
| TGGACTCACAACATTTGTAA+CGG | 0.649095 | 3_1:-86638686 | None:intergenic |
| GGGTGTTGGGGAAGTTACAA+GGG | 0.650549 | 3_1:-86642610 | None:intergenic |
| TGGTGAGGCTGTGAAAGCCA+TGG | 0.651294 | 3_1:-86638530 | None:intergenic |
| CATTAGACCCAAATGAACAT+GGG | 0.657991 | 3_1:+86642507 | Msa0383640:CDS |
| GTTGGCATTGTCGGTAAGTG+AGG | 0.658851 | 3_1:-86641567 | None:intergenic |
| CTTCCCCAACACCCTTACCA+AGG | 0.668332 | 3_1:+86642619 | Msa0383640:CDS |
| GTATATGCGAACAACCACTA+GGG | 0.671011 | 3_1:-86643328 | None:intergenic |
| GCTTGCTAGCTCCCCTACGT+AGG | 0.674811 | 3_1:-86641531 | None:intergenic |
| CTTACCGACAATGCCAACAC+AGG | 0.676631 | 3_1:+86641572 | Msa0383640:CDS |
| CCCAGGTATGTGGAACATAG+GGG | 0.677812 | 3_1:+86641328 | Msa0383640:CDS |
| ATGGTGTTGATGGTCGCCGG+TGG | 0.692693 | 3_1:-86638755 | None:intergenic |
| GGACGGGTCGATTGTAGGGG+CGG | 0.705064 | 3_1:+86641842 | Msa0383640:CDS |
| GAAGTGAAGGCCGACCAAGG+TGG | 0.710579 | 3_1:-86641384 | None:intergenic |
| AAATTTCTTAGCCTACGTAG+GGG | 0.750129 | 3_1:+86641520 | Msa0383640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATATTTTTAATAATATA+TGG | - | chr3_1:86639342-86639361 | None:intergenic | 0.0% |
| !! | AATAAATAAATAAAGATACA+TGG | + | chr3_1:86639149-86639168 | Msa0383640:intron | 10.0% |
| !!! | AATAATCAATTATACTTTTA+AGG | + | chr3_1:86639469-86639488 | Msa0383640:intron | 10.0% |
| !!! | ATAATCAATTATACTTTTAA+GGG | + | chr3_1:86639470-86639489 | Msa0383640:intron | 10.0% |
| !! | TAAAATTGGAAAAAAAAATA+GGG | + | chr3_1:86640899-86640918 | Msa0383640:intron | 10.0% |
| !! | TGATACTATAAATCTTTAAA+TGG | - | chr3_1:86639068-86639087 | None:intergenic | 15.0% |
| !!! | TAGTATGTTTTAAATTTTGT+TGG | - | chr3_1:86639273-86639292 | None:intergenic | 15.0% |
| !!! | AAAATTTAAAACATACTAAG+CGG | + | chr3_1:86639275-86639294 | Msa0383640:intron | 15.0% |
| !!! | AAATGTTTTTAGTTTTTTAG+TGG | - | chr3_1:86639774-86639793 | None:intergenic | 15.0% |
| !! | AAAATACTAATAATTCATTC+CGG | + | chr3_1:86640854-86640873 | Msa0383640:intron | 15.0% |
| !! | GTAAAATTGGAAAAAAAAAT+AGG | + | chr3_1:86640898-86640917 | Msa0383640:intron | 15.0% |
| !!! | ACATCTTAATTATTTTACAT+TGG | + | chr3_1:86642352-86642371 | Msa0383640:intron | 15.0% |
| !! | TCATTGTTTATTGAAATAAT+AGG | + | chr3_1:86642429-86642448 | Msa0383640:intron | 15.0% |
| !! | CATTGTTTATTGAAATAATA+GGG | + | chr3_1:86642430-86642449 | Msa0383640:intron | 15.0% |
| !! | CGGCAATAAAAATATAAAAT+TGG | - | chr3_1:86638914-86638933 | None:intergenic | 20.0% |
| !! | TAACATTTCTTAAAAGAAAG+AGG | + | chr3_1:86639012-86639031 | Msa0383640:intron | 20.0% |
| !!! | GGTATTTTTGAAAATATTAC+AGG | - | chr3_1:86639562-86639581 | None:intergenic | 20.0% |
| !! | ATTTATAGTAAGAACTTACA+TGG | + | chr3_1:86641145-86641164 | Msa0383640:intron | 20.0% |
| !!! | TATTAACTTGTGACATAAAA+AGG | + | chr3_1:86641222-86641241 | Msa0383640:intron | 20.0% |
| !! | TGACATAAAAAGGTTATTAT+TGG | + | chr3_1:86641232-86641251 | Msa0383640:intron | 20.0% |
| !! | TAATTTATCATATTCCGTTA+TGG | - | chr3_1:86643215-86643234 | None:intergenic | 20.0% |
| !! | ATGTAAAATTAGCGATTATA+TGG | + | chr3_1:86643302-86643321 | Msa0383640:three_prime_UTR | 20.0% |
| !!! | ACCATATTTTGCTTTGAAAT+GGG | - | chr3_1:86638571-86638590 | None:intergenic | 25.0% |
| !!! | AACCATATTTTGCTTTGAAA+TGG | - | chr3_1:86638572-86638591 | None:intergenic | 25.0% |
| !! | AAGTTTTCATTTCGAAACAA+GGG | + | chr3_1:86638625-86638644 | Msa0383640:CDS | 25.0% |
| ! | GATAAAAACTATGAGTGTTA+GGG | - | chr3_1:86638883-86638902 | None:intergenic | 25.0% |
| ! | TGATAAAAACTATGAGTGTT+AGG | - | chr3_1:86638884-86638903 | None:intergenic | 25.0% |
| ! | TAAATCTTTAAATGGAGTAG+TGG | - | chr3_1:86639060-86639079 | None:intergenic | 25.0% |
| !!! | TTATACTTTTAAGGGATCTA+CGG | + | chr3_1:86639478-86639497 | Msa0383640:intron | 25.0% |
| ! | AAATATCATGTACGAATCAA+TGG | - | chr3_1:86639508-86639527 | None:intergenic | 25.0% |
| ! | AGATTATATAATCCAGACTA+GGG | - | chr3_1:86639584-86639603 | None:intergenic | 25.0% |
| ! | GATTTCGGGAAAATTAAATT+CGG | + | chr3_1:86639620-86639639 | Msa0383640:intron | 25.0% |
| !!! | ATAGAGGTATTTATTGAAGA+TGG | + | chr3_1:86639827-86639846 | Msa0383640:intron | 25.0% |
| !! | ACTTGTTTAAGGCTATAAAT+AGG | - | chr3_1:86639856-86639875 | None:intergenic | 25.0% |
| ! | TAAATTCAGTCAAAAAAACG+TGG | - | chr3_1:86640183-86640202 | None:intergenic | 25.0% |
| ! | AGGAGATTAGAAATAGATTT+AGG | + | chr3_1:86640627-86640646 | Msa0383640:intron | 25.0% |
| !!! | TAGTATTTTTCAGATGATTC+CGG | - | chr3_1:86640843-86640862 | None:intergenic | 25.0% |
| ! | CCAAATTCAAAAAAACTAGT+GGG | - | chr3_1:86641046-86641065 | None:intergenic | 25.0% |
| ! | ACCAAATTCAAAAAAACTAG+TGG | - | chr3_1:86641047-86641066 | None:intergenic | 25.0% |
| ! | CCAAATTCAAAAAAACTAGT+GGG | - | chr3_1:86641046-86641065 | None:intergenic | 25.0% |
| ! | ACCAAATTCAAAAAAACTAG+TGG | - | chr3_1:86641047-86641066 | None:intergenic | 25.0% |
| !! | AATTATTTCTCCTCAAGAAA+AGG | - | chr3_1:86641200-86641219 | None:intergenic | 25.0% |
| ! | AATTGATAAATGCAAACCTA+AGG | + | chr3_1:86641258-86641277 | Msa0383640:intron | 25.0% |
| ! | AAAATTATCAACTCTTCCTT+AGG | - | chr3_1:86641277-86641296 | None:intergenic | 25.0% |
| !! | TGATAATTTTACATGCAGAA+AGG | + | chr3_1:86641287-86641306 | Msa0383640:intron | 25.0% |
| ! | AATAACATAGTGTTCAGTAA+CGG | - | chr3_1:86641897-86641916 | None:intergenic | 25.0% |
| !!! | ATTTTGGTATGTGATTTTGA+AGG | + | chr3_1:86642124-86642143 | Msa0383640:intron | 25.0% |
| ! | CTTCATATGCATTTATGAAA+TGG | - | chr3_1:86642184-86642203 | None:intergenic | 25.0% |
| ! | TTTCATAAATGCATATGAAG+AGG | + | chr3_1:86642184-86642203 | Msa0383640:CDS | 25.0% |
| ! | GTTTATTGAAATAATAGGGT+TGG | + | chr3_1:86642434-86642453 | Msa0383640:intron | 25.0% |
| ! | AAAAAAAGTTAGAACAAGGA+GGG | - | chr3_1:86642878-86642897 | None:intergenic | 25.0% |
| ! | AAAAAAAAGTTAGAACAAGG+AGG | - | chr3_1:86642879-86642898 | None:intergenic | 25.0% |
| ! | GGTAAAAAAAAGTTAGAACA+AGG | - | chr3_1:86642882-86642901 | None:intergenic | 25.0% |
| !!! | CCATATTTTGCTTTGAAATG+GGG | - | chr3_1:86638570-86638589 | None:intergenic | 30.0% |
| ! | CAAGTTTTCATTTCGAAACA+AGG | + | chr3_1:86638624-86638643 | Msa0383640:CDS | 30.0% |
| TAGTATCTCTCAAGAGAAAT+GGG | + | chr3_1:86638789-86638808 | Msa0383640:CDS | 30.0% | |
| TTAAAACATACTAAGCGGAA+AGG | + | chr3_1:86639280-86639299 | Msa0383640:intron | 30.0% | |
| !! | TATACTTTTAAGGGATCTAC+GGG | + | chr3_1:86639479-86639498 | Msa0383640:intron | 30.0% |
| GATTATATAATCCAGACTAG+GGG | - | chr3_1:86639583-86639602 | None:intergenic | 30.0% | |
| CAGATTATATAATCCAGACT+AGG | - | chr3_1:86639585-86639604 | None:intergenic | 30.0% | |
| CTAGTCTGGATTATATAATC+TGG | + | chr3_1:86639583-86639602 | Msa0383640:intron | 30.0% | |
| GACCATATTGTTAGTGATTT+CGG | + | chr3_1:86639605-86639624 | Msa0383640:intron | 30.0% | |
| ACCATATTGTTAGTGATTTC+GGG | + | chr3_1:86639606-86639625 | Msa0383640:intron | 30.0% | |
| !!! | TTAGTTTTTTAGTGGTGTCA+TGG | - | chr3_1:86639766-86639785 | None:intergenic | 30.0% |
| ATTGACTGTATTAATGACCT+AGG | - | chr3_1:86639879-86639898 | None:intergenic | 30.0% | |
| AGTCAATGAAAATGTGTTAG+TGG | + | chr3_1:86639892-86639911 | Msa0383640:intron | 30.0% | |
| TGAAAGAGAGTCATTAATGT+GGG | - | chr3_1:86639933-86639952 | None:intergenic | 30.0% | |
| TTGAAAGAGAGTCATTAATG+TGG | - | chr3_1:86639934-86639953 | None:intergenic | 30.0% | |
| AATCCAATGCTGAATATTTC+CGG | + | chr3_1:86639957-86639976 | Msa0383640:intron | 30.0% | |
| ! | TATTTCCGGATTTTACATTC+CGG | + | chr3_1:86639971-86639990 | Msa0383640:intron | 30.0% |
| ! | TTAATCCGGAAAGTATAGTT+CGG | + | chr3_1:86640049-86640068 | Msa0383640:intron | 30.0% |
| !!! | ACTTTTAGGGTTTGTATGAA+CGG | + | chr3_1:86640360-86640379 | Msa0383640:intron | 30.0% |
| !!! | TGATTCCGGATTTTAAAATC+CGG | - | chr3_1:86640829-86640848 | None:intergenic | 30.0% |
| !!! | TTTTTTTCCAATTTTACCCC+TGG | - | chr3_1:86640895-86640914 | None:intergenic | 30.0% |
| ATCATGTCGTTAGCTATAAA+CGG | + | chr3_1:86640983-86641002 | Msa0383640:intron | 30.0% | |
| !!! | CCCACTAGTTTTTTTGAATT+TGG | + | chr3_1:86641043-86641062 | Msa0383640:intron | 30.0% |
| !!! | CCCACTAGTTTTTTTGAATT+TGG | + | chr3_1:86641043-86641062 | Msa0383640:intron | 30.0% |
| ! | CTAATAACTTCCTTTTCTTG+AGG | + | chr3_1:86641187-86641206 | Msa0383640:intron | 30.0% |
| ! | CTAAGAAATTTTCAGCCTTA+GGG | - | chr3_1:86641511-86641530 | None:intergenic | 30.0% |
| AAAATTTCTTAGCCTACGTA+GGG | + | chr3_1:86641519-86641538 | Msa0383640:CDS | 30.0% | |
| ATTTGAGTACAGTGATTCTT+TGG | + | chr3_1:86641691-86641710 | Msa0383640:CDS | 30.0% | |
| TTTGAGTACAGTGATTCTTT+GGG | + | chr3_1:86641692-86641711 | Msa0383640:CDS | 30.0% | |
| ATAACATAGTGTTCAGTAAC+GGG | - | chr3_1:86641896-86641915 | None:intergenic | 30.0% | |
| TGAAATTTGTACAATGGAGT+TGG | - | chr3_1:86641971-86641990 | None:intergenic | 30.0% | |
| CATAACATGCATAAAAGCTT+TGG | - | chr3_1:86642008-86642027 | None:intergenic | 30.0% | |
| AAATGGAAAGTAACGAACAA+AGG | - | chr3_1:86642167-86642186 | None:intergenic | 30.0% | |
| GTATTCAATTATGACCTTAC+AGG | - | chr3_1:86642383-86642402 | None:intergenic | 30.0% | |
| ! | ATTGAAATAATAGGGTTGGT+CGG | + | chr3_1:86642438-86642457 | Msa0383640:intron | 30.0% |
| AGCATAAACCCTAATTATCT+AGG | + | chr3_1:86642548-86642567 | Msa0383640:CDS | 30.0% | |
| GCATAAACCCTAATTATCTA+GGG | + | chr3_1:86642549-86642568 | Msa0383640:CDS | 30.0% | |
| ACTTCAACCCTAGATAATTA+GGG | - | chr3_1:86642559-86642578 | None:intergenic | 30.0% | |
| TACTTCAACCCTAGATAATT+AGG | - | chr3_1:86642560-86642579 | None:intergenic | 30.0% | |
| TCAACTAAATGTATGTTGGT+GGG | - | chr3_1:86642684-86642703 | None:intergenic | 30.0% | |
| TTCAACTAAATGTATGTTGG+TGG | - | chr3_1:86642685-86642704 | None:intergenic | 30.0% | |
| ACGTTCAACTAAATGTATGT+TGG | - | chr3_1:86642688-86642707 | None:intergenic | 30.0% | |
| AAAAAAGTTAGAACAAGGAG+GGG | - | chr3_1:86642877-86642896 | None:intergenic | 30.0% | |
| !!! | TTTTTTTACCCTCATATGAC+AGG | + | chr3_1:86642892-86642911 | Msa0383640:intron | 30.0% |
| ! | TAGTCACACTTTTACTGTTT+TGG | - | chr3_1:86643051-86643070 | None:intergenic | 30.0% |
| GTTTCGTATTATAGATGGTG+AGG | - | chr3_1:86638548-86638567 | None:intergenic | 35.0% | |
| ATGGGGTTTCGTATTATAGA+TGG | - | chr3_1:86638553-86638572 | None:intergenic | 35.0% | |
| CCCCATTTCAAAGCAAAATA+TGG | + | chr3_1:86638567-86638586 | Msa0383640:CDS | 35.0% | |
| ! | ACATGCTTGATAACACTTGT+AGG | + | chr3_1:86638599-86638618 | Msa0383640:CDS | 35.0% |
| TGGACTCACAACATTTGTAA+CGG | - | chr3_1:86638689-86638708 | None:intergenic | 35.0% | |
| CTAGTATCTCTCAAGAGAAA+TGG | + | chr3_1:86638788-86638807 | Msa0383640:CDS | 35.0% | |
| GTAACATTCACTTCAAGTAG+AGG | - | chr3_1:86639211-86639230 | None:intergenic | 35.0% | |
| CAAGTAGAACTCGACTATAA+TGG | - | chr3_1:86639236-86639255 | None:intergenic | 35.0% | |
| GACAAACCAATATTACGTGT+AGG | - | chr3_1:86639377-86639396 | None:intergenic | 35.0% | |
| !! | ATACTTTTAAGGGATCTACG+GGG | + | chr3_1:86639480-86639499 | Msa0383640:intron | 35.0% |
| TTTCAAAAATACCCCTAGTC+TGG | + | chr3_1:86639569-86639588 | Msa0383640:intron | 35.0% | |
| TCCCGAAATCACTAACAATA+TGG | - | chr3_1:86639610-86639629 | None:intergenic | 35.0% | |
| AATAGCATTTCAGCTTGTGT+GGG | - | chr3_1:86639714-86639733 | None:intergenic | 35.0% | |
| TATTGCAGGGTTCATATGAA+CGG | + | chr3_1:86639730-86639749 | Msa0383640:intron | 35.0% | |
| AGATGTGAAGTGAAGAATAG+AGG | + | chr3_1:86639811-86639830 | Msa0383640:intron | 35.0% | |
| ! | TATAGCCTTAAACAAGTCCT+AGG | + | chr3_1:86639859-86639878 | Msa0383640:intron | 35.0% |
| ! | AATGACCTAGGACTTGTTTA+AGG | - | chr3_1:86639867-86639886 | None:intergenic | 35.0% |
| AATCCGGAAATATTCAGCAT+TGG | - | chr3_1:86639963-86639982 | None:intergenic | 35.0% | |
| ACATTCCGGAATGTAAAATC+CGG | - | chr3_1:86639979-86639998 | None:intergenic | 35.0% | |
| TCACCATTATCGCATTAATC+CGG | + | chr3_1:86640035-86640054 | Msa0383640:intron | 35.0% | |
| TTTCCGGATTAATGCGATAA+TGG | - | chr3_1:86640041-86640060 | None:intergenic | 35.0% | |
| AAGTATAGTTCGGAAACCAA+AGG | + | chr3_1:86640059-86640078 | Msa0383640:intron | 35.0% | |
| GTATTCCGGATTGTATATTC+CGG | + | chr3_1:86640083-86640102 | Msa0383640:intron | 35.0% | |
| GGTTTGGAAGGCTATTTATA+GGG | - | chr3_1:86640236-86640255 | None:intergenic | 35.0% | |
| TGGAAAATCATGGTTGTAGA+AGG | - | chr3_1:86640305-86640324 | None:intergenic | 35.0% | |
| ! | GGTCTCGTTGAAAACTTTTA+GGG | + | chr3_1:86640347-86640366 | Msa0383640:intron | 35.0% |
| !! | ACATAGCAGTAGTTTGCTAT+TGG | - | chr3_1:86640557-86640576 | None:intergenic | 35.0% |
| GCTCTTAGGAGATTAGAATT+AGG | + | chr3_1:86640599-86640618 | Msa0383640:intron | 35.0% | |
| GAGATTAGAATTAGGCTCTT+AGG | + | chr3_1:86640607-86640626 | Msa0383640:intron | 35.0% | |
| GTTCTGCTAAAATACTGTTC+CGG | + | chr3_1:86640807-86640826 | Msa0383640:intron | 35.0% | |
| !!! | CTGTTCCGGATTTTAAAATC+CGG | + | chr3_1:86640821-86640840 | Msa0383640:intron | 35.0% |
| GGTGGAAAAAGTAATACTCT+TGG | + | chr3_1:86640941-86640960 | Msa0383640:intron | 35.0% | |
| GTTTATAGCTAACGACATGA+TGG | - | chr3_1:86640984-86641003 | None:intergenic | 35.0% | |
| AAAGGAACGTACATAAGGAA+TGG | + | chr3_1:86641305-86641324 | Msa0383640:CDS | 35.0% | |
| ! | GCTAAGAAATTTTCAGCCTT+AGG | - | chr3_1:86641512-86641531 | None:intergenic | 35.0% |
| GAAAATTTCTTAGCCTACGT+AGG | + | chr3_1:86641518-86641537 | Msa0383640:CDS | 35.0% | |
| AAATTTCTTAGCCTACGTAG+GGG | + | chr3_1:86641520-86641539 | Msa0383640:CDS | 35.0% | |
| TCTAATGAGAGGAAGGTTAT+TGG | + | chr3_1:86641821-86641840 | Msa0383640:CDS | 35.0% | |
| CTCCATTGTACAAATTTCAG+TGG | + | chr3_1:86641972-86641991 | Msa0383640:CDS | 35.0% | |
| TGCCACTGAAATTTGTACAA+TGG | - | chr3_1:86641977-86641996 | None:intergenic | 35.0% | |
| !! | TTGGTATGTGATTTTGAAGG+TGG | + | chr3_1:86642127-86642146 | Msa0383640:intron | 35.0% |
| TATGAAGAGGAAGATGAAGA+TGG | + | chr3_1:86642197-86642216 | Msa0383640:CDS | 35.0% | |
| ATGAAGAGGAAGATGAAGAT+GGG | + | chr3_1:86642198-86642217 | Msa0383640:CDS | 35.0% | |
| CAATTATGACCTTACAGGAA+GGG | - | chr3_1:86642378-86642397 | None:intergenic | 35.0% | |
| TCAATTATGACCTTACAGGA+AGG | - | chr3_1:86642379-86642398 | None:intergenic | 35.0% | |
| CATTAGACCCAAATGAACAT+GGG | + | chr3_1:86642507-86642526 | Msa0383640:CDS | 35.0% | |
| ACATACAAAGACCTTGGTAA+GGG | - | chr3_1:86642633-86642652 | None:intergenic | 35.0% | |
| GAATTGACATACAAAGACCT+TGG | - | chr3_1:86642639-86642658 | None:intergenic | 35.0% | |
| AGATCGATCTACAATCAGAA+AGG | + | chr3_1:86642726-86642745 | Msa0383640:intron | 35.0% | |
| GATCGATCTACAATCAGAAA+GGG | + | chr3_1:86642727-86642746 | Msa0383640:intron | 35.0% | |
| TCCATCATCAGTGAGAAAAA+TGG | + | chr3_1:86642925-86642944 | Msa0383640:CDS | 35.0% | |
| !! | TCCATTTTTCTCACTGATGA+TGG | - | chr3_1:86642929-86642948 | None:intergenic | 35.0% |
| ATCAGTGAGAAAAATGGAGA+AGG | + | chr3_1:86642931-86642950 | Msa0383640:CDS | 35.0% | |
| AAATGGAGAAGGATATGCTT+TGG | + | chr3_1:86642942-86642961 | Msa0383640:CDS | 35.0% | |
| !!! | GGATATGCTTTGGTTTTAGA+TGG | + | chr3_1:86642952-86642971 | Msa0383640:CDS | 35.0% |
| ATCCATATGGAAGTCCATAA+GGG | - | chr3_1:86643011-86643030 | None:intergenic | 35.0% | |
| AATCCATATGGAAGTCCATA+AGG | - | chr3_1:86643012-86643031 | None:intergenic | 35.0% | |
| GACTGTTGTCATTATCGTAT+TGG | + | chr3_1:86643073-86643092 | Msa0383640:three_prime_UTR | 35.0% | |
| AAGCTGATAGCAATCCATAA+CGG | + | chr3_1:86643198-86643217 | Msa0383640:three_prime_UTR | 35.0% | |
| !! | CGAAACAAGGGCATCTATAA+AGG | + | chr3_1:86638637-86638656 | Msa0383640:CDS | 40.0% |
| ! | GTGGTCTCTAAACTTTTCTC+CGG | - | chr3_1:86638739-86638758 | None:intergenic | 40.0% |
| GAGAAAAGTTTAGAGACCAC+CGG | + | chr3_1:86638739-86638758 | Msa0383640:CDS | 40.0% | |
| AGATACTAGTCCATGCAACA+TGG | - | chr3_1:86638777-86638796 | None:intergenic | 40.0% | |
| ATCTCTCAAGAGAAATGGGA+AGG | + | chr3_1:86638793-86638812 | Msa0383640:CDS | 40.0% | |
| TTCAAGGACATATTCCACTC+TGG | + | chr3_1:86638827-86638846 | Msa0383640:CDS | 40.0% | |
| GTAGAACTCGACTATAATGG+TGG | - | chr3_1:86639233-86639252 | None:intergenic | 40.0% | |
| GCTGATCCTACACGTAATAT+TGG | + | chr3_1:86639368-86639387 | Msa0383640:intron | 40.0% | |
| ATTCCCGTAATATACCTGGT+GGG | - | chr3_1:86639424-86639443 | None:intergenic | 40.0% | |
| CTTGATTCCCGTAATATACC+TGG | - | chr3_1:86639428-86639447 | None:intergenic | 40.0% | |
| !!! | CAGATGTTGTGCGCTTTTTT+GGG | + | chr3_1:86639645-86639664 | Msa0383640:intron | 40.0% |
| TGGGTCTTTCTTTGATGTCA+TGG | + | chr3_1:86639664-86639683 | Msa0383640:intron | 40.0% | |
| GGGTCTTTCTTTGATGTCAT+GGG | + | chr3_1:86639665-86639684 | Msa0383640:intron | 40.0% | |
| CTTGTGTGGGGTTCATATAA+CGG | - | chr3_1:86639701-86639720 | None:intergenic | 40.0% | |
| ATAGCATTTCAGCTTGTGTG+GGG | - | chr3_1:86639713-86639732 | None:intergenic | 40.0% | |
| CAATAGCATTTCAGCTTGTG+TGG | - | chr3_1:86639715-86639734 | None:intergenic | 40.0% | |
| ACAAGCTGAAATGCTATTGC+AGG | + | chr3_1:86639716-86639735 | Msa0383640:intron | 40.0% | |
| CAAGCTGAAATGCTATTGCA+GGG | + | chr3_1:86639717-86639736 | Msa0383640:intron | 40.0% | |
| GTCATTAATGTGGGTTTGGA+CGG | - | chr3_1:86639924-86639943 | None:intergenic | 40.0% | |
| GAGAGTCATTAATGTGGGTT+TGG | - | chr3_1:86639928-86639947 | None:intergenic | 40.0% | |
| AAAAGTTGGCACTTCCTGTA+GGG | - | chr3_1:86640008-86640027 | None:intergenic | 40.0% | |
| ! | AATGCGATAATGGTGAACGA+GGG | - | chr3_1:86640031-86640050 | None:intergenic | 40.0% |
| ! | TAATGCGATAATGGTGAACG+AGG | - | chr3_1:86640032-86640051 | None:intergenic | 40.0% |
| GGTTTCCGAACTATACTTTC+CGG | - | chr3_1:86640057-86640076 | None:intergenic | 40.0% | |
| TACAATCCGGAATACACCTT+TGG | - | chr3_1:86640078-86640097 | None:intergenic | 40.0% | |
| GCATTCCGGAATATACAATC+CGG | - | chr3_1:86640091-86640110 | None:intergenic | 40.0% | |
| TGGAAGGCTATTTATAGGGA+GGG | - | chr3_1:86640232-86640251 | None:intergenic | 40.0% | |
| TTGGAAGGCTATTTATAGGG+AGG | - | chr3_1:86640233-86640252 | None:intergenic | 40.0% | |
| GGGTTTGGAAGGCTATTTAT+AGG | - | chr3_1:86640237-86640256 | None:intergenic | 40.0% | |
| ATGGTTGTAGAAGGAAGAAG+AGG | - | chr3_1:86640296-86640315 | None:intergenic | 40.0% | |
| ! | CAACCATGATTTTCCATCGT+TGG | + | chr3_1:86640309-86640328 | Msa0383640:intron | 40.0% |
| TATCTATGAAAGGCCAACGA+TGG | - | chr3_1:86640325-86640344 | None:intergenic | 40.0% | |
| !! | TCGTTGGCCTTTCATAGATA+AGG | + | chr3_1:86640325-86640344 | Msa0383640:intron | 40.0% |
| !! | CGTTGGCCTTTCATAGATAA+GGG | + | chr3_1:86640326-86640345 | Msa0383640:intron | 40.0% |
| ACGAGACCCTTATCTATGAA+AGG | - | chr3_1:86640335-86640354 | None:intergenic | 40.0% | |
| ! | GGGTCTCGTTGAAAACTTTT+AGG | + | chr3_1:86640346-86640365 | Msa0383640:intron | 40.0% |
| GTTTGTATGAACGGTCAATG+AGG | + | chr3_1:86640369-86640388 | Msa0383640:intron | 40.0% | |
| AGAAGAAACAAATGCCCTGA+GGG | - | chr3_1:86640498-86640517 | None:intergenic | 40.0% | |
| AAGAAGAAACAAATGCCCTG+AGG | - | chr3_1:86640499-86640518 | None:intergenic | 40.0% | |
| !! | TAGCAGTAGTTTGCTATTGG+AGG | - | chr3_1:86640554-86640573 | None:intergenic | 40.0% |
| TATGTCCTATCACATACCAG+TGG | + | chr3_1:86640572-86640591 | Msa0383640:intron | 40.0% | |
| TCATTCCGGAATACGAAATC+CGG | + | chr3_1:86640868-86640887 | Msa0383640:intron | 40.0% | |
| TGCAGAAAGGAACGTACATA+AGG | + | chr3_1:86641300-86641319 | Msa0383640:intron | 40.0% | |
| AACTTCAGGCATCTCTTTGA+CGG | + | chr3_1:86641356-86641375 | Msa0383640:CDS | 40.0% | |
| !!! | TGAGTTTTCTGAAGTCCCTA+AGG | + | chr3_1:86641493-86641512 | Msa0383640:CDS | 40.0% |
| TAAGTGAGGAACCAGAGAAA+AGG | - | chr3_1:86641556-86641575 | None:intergenic | 40.0% | |
| TCCAATTGTCTCCAATGTGT+CGG | - | chr3_1:86641669-86641688 | None:intergenic | 40.0% | |
| !!! | TACCCTGGTTTTATAAGGTC+GGG | - | chr3_1:86641776-86641795 | None:intergenic | 40.0% |
| !!! | GTACCCTGGTTTTATAAGGT+CGG | - | chr3_1:86641777-86641796 | None:intergenic | 40.0% |
| !!! | CGAAGTACCCTGGTTTTATA+AGG | - | chr3_1:86641781-86641800 | None:intergenic | 40.0% |
| ! | TATAAAACCAGGGTACTTCG+TGG | + | chr3_1:86641781-86641800 | Msa0383640:CDS | 40.0% |
| ATGAGAGGAAGGTTATTGGA+CGG | + | chr3_1:86641825-86641844 | Msa0383640:CDS | 40.0% | |
| ! | ATAGTGTTCAGTAACGGGAA+AGG | - | chr3_1:86641891-86641910 | None:intergenic | 40.0% |
| CAATACCTCAATGGCATTTC+AGG | - | chr3_1:86641923-86641942 | None:intergenic | 40.0% | |
| TTCTGAGCACAATACCTCAA+TGG | - | chr3_1:86641932-86641951 | None:intergenic | 40.0% | |
| ! | ATTGTGCTCAGAATTTGCTC+AGG | + | chr3_1:86641939-86641958 | Msa0383640:CDS | 40.0% |
| ! | TTGTGCTCAGAATTTGCTCA+GGG | + | chr3_1:86641940-86641959 | Msa0383640:CDS | 40.0% |
| !! | TGCATAAAAGCTTTGGACTC+AGG | - | chr3_1:86642001-86642020 | None:intergenic | 40.0% |
| CATGTTATGTGCAAGACTAG+TGG | + | chr3_1:86642019-86642038 | Msa0383640:CDS | 40.0% | |
| CAGAACCTTCGCTCATTTAA+TGG | + | chr3_1:86642293-86642312 | Msa0383640:CDS | 40.0% | |
| CTTTGCCATTAAATGAGCGA+AGG | - | chr3_1:86642301-86642320 | None:intergenic | 40.0% | |
| AAGATGTTCTACCAGATGCT+AGG | + | chr3_1:86642318-86642337 | Msa0383640:CDS | 40.0% | |
| CAAAATACCTACCTAGCATC+TGG | - | chr3_1:86642332-86642351 | None:intergenic | 40.0% | |
| GCTGCTTCTAATGTTCCATA+TGG | - | chr3_1:86642488-86642507 | None:intergenic | 40.0% | |
| GCATTAGACCCAAATGAACA+TGG | + | chr3_1:86642506-86642525 | Msa0383640:CDS | 40.0% | |
| TGCCTTTCCCATGTTCATTT+GGG | - | chr3_1:86642517-86642536 | None:intergenic | 40.0% | |
| ATGCCTTTCCCATGTTCATT+TGG | - | chr3_1:86642518-86642537 | None:intergenic | 40.0% | |
| AAATGAACATGGGAAAGGCA+TGG | + | chr3_1:86642517-86642536 | Msa0383640:CDS | 40.0% | |
| TACAGATATGCCTATGCTTG+TGG | + | chr3_1:86642578-86642597 | Msa0383640:CDS | 40.0% | |
| GACATACAAAGACCTTGGTA+AGG | - | chr3_1:86642634-86642653 | None:intergenic | 40.0% | |
| AATCAGAAAGGGCTAAGAAC+TGG | + | chr3_1:86642738-86642757 | Msa0383640:CDS | 40.0% | |
| GCTAAGAACTGGTATGAAGA+AGG | + | chr3_1:86642749-86642768 | Msa0383640:CDS | 40.0% | |
| TCGAGGCACAAAAAATGGTT+CGG | - | chr3_1:86642786-86642805 | None:intergenic | 40.0% | |
| TTACCACACCTGTCATATGA+GGG | - | chr3_1:86642903-86642922 | None:intergenic | 40.0% | |
| ATTACCACACCTGTCATATG+AGG | - | chr3_1:86642904-86642923 | None:intergenic | 40.0% | |
| TCTGGCAATCTCTTCAAAAG+TGG | - | chr3_1:86642980-86642999 | None:intergenic | 40.0% | |
| TTCCCTTATGGACTTCCATA+TGG | + | chr3_1:86643006-86643025 | Msa0383640:CDS | 40.0% | |
| ! | ATATGGATTGCATGGATGCT+GGG | + | chr3_1:86643023-86643042 | Msa0383640:CDS | 40.0% |
| CGATTATATGGATTCCCTAG+TGG | + | chr3_1:86643314-86643333 | Msa0383640:three_prime_UTR | 40.0% | |
| GTATATGCGAACAACCACTA+GGG | - | chr3_1:86643331-86643350 | None:intergenic | 40.0% | |
| AGTATATGCGAACAACCACT+AGG | - | chr3_1:86643332-86643351 | None:intergenic | 40.0% | |
| GTAACGGTCAAGTGATCTTG+AGG | - | chr3_1:86638673-86638692 | None:intergenic | 45.0% | |
| ! | TCTAAACTTTTCTCCGGTGG+TGG | - | chr3_1:86638733-86638752 | None:intergenic | 45.0% |
| ! | GTCTCTAAACTTTTCTCCGG+TGG | - | chr3_1:86638736-86638755 | None:intergenic | 45.0% |
| ACCATCAACACCATGTTGCA+TGG | + | chr3_1:86638764-86638783 | Msa0383640:CDS | 45.0% | |
| ! | TCCATGCAACATGGTGTTGA+TGG | - | chr3_1:86638768-86638787 | None:intergenic | 45.0% |
| GAAGGAGAACTGCTTGTTCA+AGG | + | chr3_1:86638811-86638830 | Msa0383640:CDS | 45.0% | |
| TCCAGTAACGTGTCAGCAAA+TGG | + | chr3_1:86639395-86639414 | Msa0383640:intron | 45.0% | |
| CCAGTAACGTGTCAGCAAAT+GGG | + | chr3_1:86639396-86639415 | Msa0383640:intron | 45.0% | |
| GGTACCCACCAGGTATATTA+CGG | + | chr3_1:86639417-86639436 | Msa0383640:intron | 45.0% | |
| GTACCCACCAGGTATATTAC+GGG | + | chr3_1:86639418-86639437 | Msa0383640:intron | 45.0% | |
| GATTCCCGTAATATACCTGG+TGG | - | chr3_1:86639425-86639444 | None:intergenic | 45.0% | |
| ! | CCAAAAAAGCGCACAACATC+TGG | - | chr3_1:86639647-86639666 | None:intergenic | 45.0% |
| !!! | CCAGATGTTGTGCGCTTTTT+TGG | + | chr3_1:86639644-86639663 | Msa0383640:intron | 45.0% |
| GAAAAGTTGGCACTTCCTGT+AGG | - | chr3_1:86640009-86640028 | None:intergenic | 45.0% | |
| ATGGTGAACGAGGGAAAAGT+TGG | - | chr3_1:86640022-86640041 | None:intergenic | 45.0% | |
| ! | CGGAAACCAAAGGTGTATTC+CGG | + | chr3_1:86640069-86640088 | Msa0383640:intron | 45.0% |
| TGACCACTGACAAAAACGTG+TGG | - | chr3_1:86640140-86640159 | None:intergenic | 45.0% | |
| GGAAGGCTATTTATAGGGAG+GGG | - | chr3_1:86640231-86640250 | None:intergenic | 45.0% | |
| AGGATGGTGTGAGAAATGGT+GGG | - | chr3_1:86640258-86640277 | None:intergenic | 45.0% | |
| GTTGTAGAAGGAAGAAGAGG+AGG | - | chr3_1:86640293-86640312 | None:intergenic | 45.0% | |
| AGGCCAACGATGGAAAATCA+TGG | - | chr3_1:86640315-86640334 | None:intergenic | 45.0% | |
| GTATGAACGGTCAATGAGGA+TGG | + | chr3_1:86640373-86640392 | Msa0383640:intron | 45.0% | |
| TATTGGAGGAAAACCGAAGG+AGG | - | chr3_1:86640540-86640559 | None:intergenic | 45.0% | |
| TGCTATTGGAGGAAAACCGA+AGG | - | chr3_1:86640543-86640562 | None:intergenic | 45.0% | |
| CCTAACCACTGGTATGTGAT+AGG | - | chr3_1:86640580-86640599 | None:intergenic | 45.0% | |
| CCTATCACATACCAGTGGTT+AGG | + | chr3_1:86640577-86640596 | Msa0383640:intron | 45.0% | |
| ATACCAGTGGTTAGGCTCTT+AGG | + | chr3_1:86640585-86640604 | Msa0383640:intron | 45.0% | |
| ! | TTCCAATTTTACCCCTGGTC+CGG | - | chr3_1:86640890-86640909 | None:intergenic | 45.0% |
| AAAAAAAAATAGGGCGCGCG+AGG | + | chr3_1:86640908-86640927 | Msa0383640:intron | 45.0% | |
| ACATAGGGGACTACAACTTC+AGG | + | chr3_1:86641342-86641361 | Msa0383640:CDS | 45.0% | |
| ACTTCAGGCATCTCTTTGAC+GGG | + | chr3_1:86641357-86641376 | Msa0383640:CDS | 45.0% | |
| TGTCTGACGGAGACACAAAA+AGG | + | chr3_1:86641626-86641645 | Msa0383640:CDS | 45.0% | |
| GTCTGACGGAGACACAAAAA+GGG | + | chr3_1:86641627-86641646 | Msa0383640:CDS | 45.0% | |
| CAATTGTCTCCAATGTGTCG+GGG | - | chr3_1:86641667-86641686 | None:intergenic | 45.0% | |
| CCAATTGTCTCCAATGTGTC+GGG | - | chr3_1:86641668-86641687 | None:intergenic | 45.0% | |
| GAGTACAGTGATTCTTTGGG+AGG | + | chr3_1:86641695-86641714 | Msa0383640:CDS | 45.0% | |
| AACTCGCTATCCGTGACAAT+GGG | - | chr3_1:86641740-86641759 | None:intergenic | 45.0% | |
| AAACTCGCTATCCGTGACAA+TGG | - | chr3_1:86641741-86641760 | None:intergenic | 45.0% | |
| ATCCCCGACCTTATAAAACC+AGG | + | chr3_1:86641770-86641789 | Msa0383640:CDS | 45.0% | |
| TCCCCGACCTTATAAAACCA+GGG | + | chr3_1:86641771-86641790 | Msa0383640:CDS | 45.0% | |
| !!! | ACCCTGGTTTTATAAGGTCG+GGG | - | chr3_1:86641775-86641794 | None:intergenic | 45.0% |
| !! | TGGAAACTGGCTCTAATGAG+AGG | + | chr3_1:86641810-86641829 | Msa0383640:CDS | 45.0% |
| !! | AACTGGCTCTAATGAGAGGA+AGG | + | chr3_1:86641814-86641833 | Msa0383640:CDS | 45.0% |
| TGAGAGGAAGGTTATTGGAC+GGG | + | chr3_1:86641826-86641845 | Msa0383640:CDS | 45.0% | |
| TTATTGGACGGGTCGATTGT+AGG | + | chr3_1:86641837-86641856 | Msa0383640:CDS | 45.0% | |
| TATTGGACGGGTCGATTGTA+GGG | + | chr3_1:86641838-86641857 | Msa0383640:CDS | 45.0% | |
| ! | GTTCAGTAACGGGAAAGGAA+TGG | - | chr3_1:86641886-86641905 | None:intergenic | 45.0% |
| TTGTGCCTGAAATGCCATTG+AGG | + | chr3_1:86641915-86641934 | Msa0383640:CDS | 45.0% | |
| !! | GATTTTGAAGGTGGCAAGTG+TGG | + | chr3_1:86642136-86642155 | Msa0383640:intron | 45.0% |
| AAGAGGAAGATGAAGATGGG+AGG | + | chr3_1:86642201-86642220 | Msa0383640:CDS | 45.0% | |
| AGAGGAAGATGAAGATGGGA+GGG | + | chr3_1:86642202-86642221 | Msa0383640:CDS | 45.0% | |
| TGTTCTACCAGATGCTAGGT+AGG | + | chr3_1:86642322-86642341 | Msa0383640:intron | 45.0% | |
| TTACATTGGCCCTTCCTGTA+AGG | + | chr3_1:86642366-86642385 | Msa0383640:intron | 45.0% | |
| ! | TGGTCGGTTTAGAATACCAC+TGG | + | chr3_1:86642454-86642473 | Msa0383640:CDS | 45.0% |
| ! | CGGTTTAGAATACCACTGGA+TGG | + | chr3_1:86642458-86642477 | Msa0383640:CDS | 45.0% |
| GACCCAAATGAACATGGGAA+AGG | + | chr3_1:86642512-86642531 | Msa0383640:CDS | 45.0% | |
| !! | AAGACCTTGGTAAGGGTGTT+GGG | - | chr3_1:86642626-86642645 | None:intergenic | 45.0% |
| ! | AAAGACCTTGGTAAGGGTGT+TGG | - | chr3_1:86642627-86642646 | None:intergenic | 45.0% |
| ! | GGCACAAAAAATGGTTCGGA+GGG | - | chr3_1:86642782-86642801 | None:intergenic | 45.0% |
| ! | AGGCACAAAAAATGGTTCGG+AGG | - | chr3_1:86642783-86642802 | None:intergenic | 45.0% |
| TTACCCTCATATGACAGGTG+TGG | + | chr3_1:86642897-86642916 | Msa0383640:intron | 45.0% | |
| TCCATAAGGGAACTTAGCTC+TGG | - | chr3_1:86642998-86643017 | None:intergenic | 45.0% | |
| ! | GGACTTCCATATGGATTGCA+TGG | + | chr3_1:86643015-86643034 | Msa0383640:CDS | 45.0% |
| CAGCATCCATGCAATCCATA+TGG | - | chr3_1:86643024-86643043 | None:intergenic | 45.0% | |
| ! | CATATGGATTGCATGGATGC+TGG | + | chr3_1:86643022-86643041 | Msa0383640:CDS | 45.0% |
| !!! | AAATTAATAATGTATTTTTT+CGG | - | chr3_1:86638934-86638953 | None:intergenic | 5.0% |
| !!! | TTATTTATTTATTTTTTGAA+AGG | - | chr3_1:86639134-86639153 | None:intergenic | 5.0% |
| !!! | ATTAATTTTGTTTTTAATTT+TGG | + | chr3_1:86642108-86642127 | Msa0383640:intron | 5.0% |
| !! | AAACTTTTCTCCGGTGGTGG+AGG | - | chr3_1:86638730-86638749 | None:intergenic | 50.0% |
| !! | AACATGGTGTTGATGGTCGC+CGG | - | chr3_1:86638761-86638780 | None:intergenic | 50.0% |
| AGGACATATTCCACTCTGGC+TGG | + | chr3_1:86638831-86638850 | Msa0383640:CDS | 50.0% | |
| ! | CCCATTTGCTGACACGTTAC+TGG | - | chr3_1:86639399-86639418 | None:intergenic | 50.0% |
| CTGTAGGGCTAAGGACATTC+CGG | - | chr3_1:86639993-86640012 | None:intergenic | 50.0% | |
| TCCGGAATGCATCAGTGTCA+TGG | + | chr3_1:86640101-86640120 | Msa0383640:intron | 50.0% | |
| GCCATGACACTGATGCATTC+CGG | - | chr3_1:86640105-86640124 | None:intergenic | 50.0% | |
| ! | GCACCACACGTTTTTGTCAG+TGG | + | chr3_1:86640134-86640153 | Msa0383640:intron | 50.0% |
| GTGGGTCAAAAATGGTTGGG+AGG | - | chr3_1:86640209-86640228 | None:intergenic | 50.0% | |
| GGGGTGGGTCAAAAATGGTT+GGG | - | chr3_1:86640212-86640231 | None:intergenic | 50.0% | |
| AGGGGTGGGTCAAAAATGGT+TGG | - | chr3_1:86640213-86640232 | None:intergenic | 50.0% | |
| GGCTATTTATAGGGAGGGGT+GGG | - | chr3_1:86640227-86640246 | None:intergenic | 50.0% | |
| AGGCTATTTATAGGGAGGGG+TGG | - | chr3_1:86640228-86640247 | None:intergenic | 50.0% | |
| ! | GAGAAATGGTGGGGTTTGGA+AGG | - | chr3_1:86640248-86640267 | None:intergenic | 50.0% |
| ! | GTGTGAGAAATGGTGGGGTT+TGG | - | chr3_1:86640252-86640271 | None:intergenic | 50.0% |
| GGATGGTGTGAGAAATGGTG+GGG | - | chr3_1:86640257-86640276 | None:intergenic | 50.0% | |
| GAGGATGGTGTGAGAAATGG+TGG | - | chr3_1:86640259-86640278 | None:intergenic | 50.0% | |
| GGAGAGGATGGTGTGAGAAA+TGG | - | chr3_1:86640262-86640281 | None:intergenic | 50.0% | |
| GAAGGAAGAAGAGGAGGAGA+GGG | - | chr3_1:86640287-86640306 | None:intergenic | 50.0% | |
| AGAAGGAAGAAGAGGAGGAG+AGG | - | chr3_1:86640288-86640307 | None:intergenic | 50.0% | |
| AACGAAGGACGGTTCATCTG+AGG | + | chr3_1:86640407-86640426 | Msa0383640:intron | 50.0% | |
| ACGAAGGACGGTTCATCTGA+GGG | + | chr3_1:86640408-86640427 | Msa0383640:intron | 50.0% | |
| GGTTCATCTGAGGGTCATGT+GGG | + | chr3_1:86640417-86640436 | Msa0383640:intron | 50.0% | |
| GTTCTTAGCTTCGCCTGTCT+GGG | + | chr3_1:86640448-86640467 | Msa0383640:intron | 50.0% | |
| AGAAACAAATGCCCTGAGGG+AGG | - | chr3_1:86640495-86640514 | None:intergenic | 50.0% | |
| TCTCCTAAGAGCCTAACCAC+TGG | - | chr3_1:86640591-86640610 | None:intergenic | 50.0% | |
| CTGGTCCGGATTTCGTATTC+CGG | - | chr3_1:86640876-86640895 | None:intergenic | 50.0% | |
| GGAATACGAAATCCGGACCA+GGG | + | chr3_1:86640875-86640894 | Msa0383640:intron | 50.0% | |
| GAATACGAAATCCGGACCAG+GGG | + | chr3_1:86640876-86640895 | Msa0383640:intron | 50.0% | |
| ATCCGGACCAGGGGTAAAAT+TGG | + | chr3_1:86640885-86640904 | Msa0383640:intron | 50.0% | |
| ACGTACATAAGGAATGGCCC+AGG | + | chr3_1:86641311-86641330 | Msa0383640:CDS | 50.0% | |
| TAAGGAATGGCCCAGGTATG+TGG | + | chr3_1:86641318-86641337 | Msa0383640:CDS | 50.0% | |
| GCCCAGGTATGTGGAACATA+GGG | + | chr3_1:86641327-86641346 | Msa0383640:CDS | 50.0% | |
| CCCCTATGTTCCACATACCT+GGG | - | chr3_1:86641331-86641350 | None:intergenic | 50.0% | |
| CCCAGGTATGTGGAACATAG+GGG | + | chr3_1:86641328-86641347 | Msa0383640:CDS | 50.0% | |
| TCCCCTATGTTCCACATACC+TGG | - | chr3_1:86641332-86641351 | None:intergenic | 50.0% | |
| AGATTCAACTTGCCGATGGC+CGG | - | chr3_1:86641429-86641448 | None:intergenic | 50.0% | |
| CCTGAGATTCAACTTGCCGA+TGG | - | chr3_1:86641433-86641452 | None:intergenic | 50.0% | |
| ! | CCATCGGCAAGTTGAATCTC+AGG | + | chr3_1:86641430-86641449 | Msa0383640:CDS | 50.0% |
| ! | GAGCTAGCAAGCCTTTTCTC+TGG | + | chr3_1:86641542-86641561 | Msa0383640:CDS | 50.0% |
| GTTGGCATTGTCGGTAAGTG+AGG | - | chr3_1:86641570-86641589 | None:intergenic | 50.0% | |
| CTTACCGACAATGCCAACAC+AGG | + | chr3_1:86641572-86641591 | Msa0383640:CDS | 50.0% | |
| TGTGTCGGGGTCTATCACTA+TGG | - | chr3_1:86641654-86641673 | None:intergenic | 50.0% | |
| AGTGATAGACCCCGACACAT+TGG | + | chr3_1:86641655-86641674 | Msa0383640:CDS | 50.0% | |
| CCCGACACATTGGAGACAAT+TGG | + | chr3_1:86641665-86641684 | Msa0383640:CDS | 50.0% | |
| CTCTGCACATCCCATTGTCA+CGG | + | chr3_1:86641727-86641746 | Msa0383640:CDS | 50.0% | |
| ATTGGACGGGTCGATTGTAG+GGG | + | chr3_1:86641839-86641858 | Msa0383640:CDS | 50.0% | |
| GAGGGTGACTGCTGTTATTG+CGG | + | chr3_1:86642220-86642239 | Msa0383640:CDS | 50.0% | |
| CCATATGGACTTCCATCCAG+TGG | - | chr3_1:86642473-86642492 | None:intergenic | 50.0% | |
| CCACTGGATGGAAGTCCATA+TGG | + | chr3_1:86642470-86642489 | Msa0383640:CDS | 50.0% | |
| !! | GGGTGTTGGGGAAGTTACAA+GGG | - | chr3_1:86642613-86642632 | None:intergenic | 50.0% |
| !! | AGGGTGTTGGGGAAGTTACA+AGG | - | chr3_1:86642614-86642633 | None:intergenic | 50.0% |
| !! | AGACCTTGGTAAGGGTGTTG+GGG | - | chr3_1:86642625-86642644 | None:intergenic | 50.0% |
| CCTGGTCGAGGCACAAAAAA+TGG | - | chr3_1:86642791-86642810 | None:intergenic | 50.0% | |
| !!! | CCATTTTTTGTGCCTCGACC+AGG | + | chr3_1:86642788-86642807 | Msa0383640:CDS | 50.0% |
| TCATCTTCCTCTGTTGCTCC+TGG | - | chr3_1:86642809-86642828 | None:intergenic | 50.0% | |
| GGAGCAACAGAGGAAGATGA+TGG | + | chr3_1:86642809-86642828 | Msa0383640:CDS | 50.0% | |
| GCCAGAGCTAAGTTCCCTTA+TGG | + | chr3_1:86642994-86643013 | Msa0383640:CDS | 50.0% | |
| ATTCCACTCTGGCTGGTGAG+TGG | + | chr3_1:86638838-86638857 | Msa0383640:intron | 55.0% | |
| TTCCACTCTGGCTGGTGAGT+GGG | + | chr3_1:86638839-86638858 | Msa0383640:intron | 55.0% | |
| TCAGCAAATGGGTACCCACC+AGG | + | chr3_1:86639407-86639426 | Msa0383640:intron | 55.0% | |
| CGGAATGTCCTTAGCCCTAC+AGG | + | chr3_1:86639991-86640010 | Msa0383640:intron | 55.0% | |
| TGGCACTTCCTGTAGGGCTA+AGG | - | chr3_1:86640002-86640021 | None:intergenic | 55.0% | |
| TGCATCAGTGTCATGGCCAG+TGG | + | chr3_1:86640108-86640127 | Msa0383640:intron | 55.0% | |
| AAACGTGTGGTGCAGACCAC+TGG | - | chr3_1:86640127-86640146 | None:intergenic | 55.0% | |
| AGGGAGGGGTGGGTCAAAAA+TGG | - | chr3_1:86640217-86640236 | None:intergenic | 55.0% | |
| GAAGAAGAGGAGGAGAGGGT+GGG | - | chr3_1:86640283-86640302 | None:intergenic | 55.0% | |
| CGGTTCATCTGAGGGTCATG+TGG | + | chr3_1:86640416-86640435 | Msa0383640:intron | 55.0% | |
| CATCTGAGGGTCATGTGGGT+CGG | + | chr3_1:86640421-86640440 | Msa0383640:intron | 55.0% | |
| GGTTCTTAGCTTCGCCTGTC+TGG | + | chr3_1:86640447-86640466 | Msa0383640:intron | 55.0% | |
| ACAAATGCCCTGAGGGAGGT+GGG | - | chr3_1:86640491-86640510 | None:intergenic | 55.0% | |
| AACAAATGCCCTGAGGGAGG+TGG | - | chr3_1:86640492-86640511 | None:intergenic | 55.0% | |
| AAACCGAAGGAGGAGGGAAG+AGG | - | chr3_1:86640530-86640549 | None:intergenic | 55.0% | |
| GGAGGAAAACCGAAGGAGGA+GGG | - | chr3_1:86640536-86640555 | None:intergenic | 55.0% | |
| TGGAGGAAAACCGAAGGAGG+AGG | - | chr3_1:86640537-86640556 | None:intergenic | 55.0% | |
| CGGAATACGAAATCCGGACC+AGG | + | chr3_1:86640874-86640893 | Msa0383640:intron | 55.0% | |
| GGCCCAGGTATGTGGAACAT+AGG | + | chr3_1:86641326-86641345 | Msa0383640:CDS | 55.0% | |
| ! | CACGCCTGTGTTGGCATTGT+CGG | - | chr3_1:86641579-86641598 | None:intergenic | 55.0% |
| AACACAGGCGTGGTGAAGCT+CGG | + | chr3_1:86641587-86641606 | Msa0383640:CDS | 55.0% | |
| ! | TGGGAGGGTGGTTTGTCTGA+CGG | + | chr3_1:86641613-86641632 | Msa0383640:CDS | 55.0% |
| TTCGTGGCGAGGATGGAAAC+TGG | + | chr3_1:86641797-86641816 | Msa0383640:CDS | 55.0% | |
| GGAAAGGAATGGACCCAACC+GGG | - | chr3_1:86641875-86641894 | None:intergenic | 55.0% | |
| GGGAAAGGAATGGACCCAAC+CGG | - | chr3_1:86641876-86641895 | None:intergenic | 55.0% | |
| CTTCCCCAACACCCTTACCA+AGG | + | chr3_1:86642619-86642638 | Msa0383640:CDS | 55.0% | |
| GGTGGAGCAATCACACGCGA+TGG | - | chr3_1:86638709-86638728 | None:intergenic | 60.0% | |
| GATTGCTCCACCTCCACCAC+CGG | + | chr3_1:86638717-86638736 | Msa0383640:CDS | 60.0% | |
| !!! | CTTTTCTCCGGTGGTGGAGG+TGG | - | chr3_1:86638727-86638746 | None:intergenic | 60.0% |
| !! | ATGGTGTTGATGGTCGCCGG+TGG | - | chr3_1:86638758-86638777 | None:intergenic | 60.0% |
| AACCCACTCACCAGCCAGAG+TGG | - | chr3_1:86638844-86638863 | None:intergenic | 60.0% | |
| GGACGCGCGAGAAAGCAGTA+GGG | - | chr3_1:86639541-86639560 | None:intergenic | 60.0% | |
| AGGACGCGCGAGAAAGCAGT+AGG | - | chr3_1:86639542-86639561 | None:intergenic | 60.0% | |
| GGAAGAAGAGGAGGAGAGGG+TGG | - | chr3_1:86640284-86640303 | None:intergenic | 60.0% | |
| ATGGAACCGCGCTGCAACGA+AGG | + | chr3_1:86640392-86640411 | Msa0383640:intron | 60.0% | |
| AACCGCGCTGCAACGAAGGA+CGG | + | chr3_1:86640396-86640415 | Msa0383640:intron | 60.0% | |
| AACCGTCCTTCGTTGCAGCG+CGG | - | chr3_1:86640401-86640420 | None:intergenic | 60.0% | |
| GCTCAGACTTACGCCCAGAC+AGG | - | chr3_1:86640464-86640483 | None:intergenic | 60.0% | |
| AAATGCCCTGAGGGAGGTGG+GGG | - | chr3_1:86640489-86640508 | None:intergenic | 60.0% | |
| CAAATGCCCTGAGGGAGGTG+GGG | - | chr3_1:86640490-86640509 | None:intergenic | 60.0% | |
| CGAAGGAGGAGGGAAGAGGA+GGG | - | chr3_1:86640526-86640545 | None:intergenic | 60.0% | |
| CCTCCTCTTCCCTCCTCCTT+CGG | + | chr3_1:86640524-86640543 | Msa0383640:intron | 60.0% | |
| GGCGCGCGAGGAAATGCATA+GGG | + | chr3_1:86640920-86640939 | Msa0383640:intron | 60.0% | |
| GCGCGAGGAAATGCATAGGG+TGG | + | chr3_1:86640923-86640942 | Msa0383640:intron | 60.0% | |
| ! | CTTTGACGGGTACGCCACCT+TGG | + | chr3_1:86641370-86641389 | Msa0383640:CDS | 60.0% |
| GAAGTGAAGGCCGACCAAGG+TGG | - | chr3_1:86641387-86641406 | None:intergenic | 60.0% | |
| CTCGAAGTGAAGGCCGACCA+AGG | - | chr3_1:86641390-86641409 | None:intergenic | 60.0% | |
| CTTGGTCGGCCTTCACTTCG+AGG | + | chr3_1:86641388-86641407 | Msa0383640:CDS | 60.0% | |
| GTCGGCCTTCACTTCGAGGA+CGG | + | chr3_1:86641392-86641411 | Msa0383640:CDS | 60.0% | |
| TCGGCCTTCACTTCGAGGAC+GGG | + | chr3_1:86641393-86641412 | Msa0383640:CDS | 60.0% | |
| ! | GCTTGCTAGCTCCCCTACGT+AGG | - | chr3_1:86641534-86641553 | None:intergenic | 60.0% |
| CGACAATGCCAACACAGGCG+TGG | + | chr3_1:86641577-86641596 | Msa0383640:CDS | 60.0% | |
| GAGCTTCACCACGCCTGTGT+TGG | - | chr3_1:86641588-86641607 | None:intergenic | 60.0% | |
| ! | AACCAGGGTACTTCGTGGCG+AGG | + | chr3_1:86641786-86641805 | Msa0383640:CDS | 60.0% |
| ! | ATCCTCGCCACGAAGTACCC+TGG | - | chr3_1:86641791-86641810 | None:intergenic | 60.0% |
| ! | AGGGTACTTCGTGGCGAGGA+TGG | + | chr3_1:86641790-86641809 | Msa0383640:CDS | 60.0% |
| TGTAGGGGCGGTACATCACC+CGG | + | chr3_1:86641854-86641873 | Msa0383640:CDS | 60.0% | |
| GCGCTGTGCTCCACAAGCAT+AGG | - | chr3_1:86642591-86642610 | None:intergenic | 60.0% | |
| TCCTCTGTTGCTCCTGGTCG+AGG | - | chr3_1:86642803-86642822 | None:intergenic | 60.0% | |
| CGCGCGAGAAAGCAGTAGGG+TGG | - | chr3_1:86639538-86639557 | None:intergenic | 65.0% | |
| GAGGAGAGGGTGGGAGAGGA+TGG | - | chr3_1:86640274-86640293 | None:intergenic | 65.0% | |
| AGAGGAGGAGAGGGTGGGAG+AGG | - | chr3_1:86640278-86640297 | None:intergenic | 65.0% | |
| GAGGGTCATGTGGGTCGGTG+TGG | + | chr3_1:86640426-86640445 | Msa0383640:intron | 65.0% | |
| AATGCCCTGAGGGAGGTGGG+GGG | - | chr3_1:86640488-86640507 | None:intergenic | 65.0% | |
| CCGAAGGAGGAGGGAAGAGG+AGG | - | chr3_1:86640527-86640546 | None:intergenic | 65.0% | |
| GGGCGCGCGAGGAAATGCAT+AGG | + | chr3_1:86640919-86640938 | Msa0383640:intron | 65.0% | |
| GACGGGTACGCCACCTTGGT+CGG | + | chr3_1:86641374-86641393 | Msa0383640:CDS | 65.0% | |
| GCCTTCACTTCGAGGACGGG+CGG | + | chr3_1:86641396-86641415 | Msa0383640:CDS | 65.0% | |
| ACCGCCCGTCCTCGAAGTGA+AGG | - | chr3_1:86641400-86641419 | None:intergenic | 65.0% | |
| GAGGACGGGCGGTTAGTAGC+CGG | + | chr3_1:86641407-86641426 | Msa0383640:CDS | 65.0% | |
| GGCGGTTAGTAGCCGGCCAT+CGG | + | chr3_1:86641414-86641433 | Msa0383640:CDS | 65.0% | |
| GCGTGGTGAAGCTCGGCGAT+GGG | + | chr3_1:86641594-86641613 | Msa0383640:CDS | 65.0% | |
| TGGTGAAGCTCGGCGATGGG+AGG | + | chr3_1:86641597-86641616 | Msa0383640:CDS | 65.0% | |
| GGTGAAGCTCGGCGATGGGA+GGG | + | chr3_1:86641598-86641617 | Msa0383640:CDS | 65.0% | |
| GGACGGGTCGATTGTAGGGG+CGG | + | chr3_1:86641842-86641861 | Msa0383640:CDS | 65.0% | |
| GGGCGGTACATCACCCGGTT+GGG | + | chr3_1:86641859-86641878 | Msa0383640:CDS | 65.0% | |
| GCCTCGACCAGGAGCAACAG+AGG | + | chr3_1:86642799-86642818 | Msa0383640:CDS | 65.0% | |
| AGCACCCCCCACCTCCCTCA+GGG | + | chr3_1:86640481-86640500 | Msa0383640:intron | 70.0% | |
| GGAGGAGGGAAGAGGAGGGC+AGG | - | chr3_1:86640522-86640541 | None:intergenic | 70.0% | |
| GGCGTGGTGAAGCTCGGCGA+TGG | + | chr3_1:86641593-86641612 | Msa0383640:CDS | 70.0% | |
| GAAGCTCGGCGATGGGAGGG+TGG | + | chr3_1:86641601-86641620 | Msa0383640:CDS | 70.0% | |
| GGGGCGGTACATCACCCGGT+TGG | + | chr3_1:86641858-86641877 | Msa0383640:CDS | 70.0% | |
| GAGCACCCCCCACCTCCCTC+AGG | + | chr3_1:86640480-86640499 | Msa0383640:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 86638532 | 86643417 | 86638532 | ID=Msa0383640;Name=Msa0383640 |
| chr3_1 | mRNA | 86638532 | 86643417 | 86638532 | ID=Msa0383640-mRNA-1;Parent=Msa0383640;Name=Msa0383640-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.83|1|1|1|6|358|565 |
| chr3_1 | exon | 86638532 | 86638852 | 86638532 | ID=Msa0383640-mRNA-1:exon:22946;Parent=Msa0383640-mRNA-1 |
| chr3_1 | exon | 86641305 | 86642048 | 86641305 | ID=Msa0383640-mRNA-1:exon:22947;Parent=Msa0383640-mRNA-1 |
| chr3_1 | exon | 86642146 | 86642339 | 86642146 | ID=Msa0383640-mRNA-1:exon:22948;Parent=Msa0383640-mRNA-1 |
| chr3_1 | exon | 86642451 | 86642640 | 86642451 | ID=Msa0383640-mRNA-1:exon:22949;Parent=Msa0383640-mRNA-1 |
| chr3_1 | exon | 86642728 | 86642830 | 86642728 | ID=Msa0383640-mRNA-1:exon:22950;Parent=Msa0383640-mRNA-1 |
| chr3_1 | exon | 86642914 | 86643417 | 86642914 | ID=Msa0383640-mRNA-1:exon:22951;Parent=Msa0383640-mRNA-1 |
| chr3_1 | CDS | 86638532 | 86638852 | 86638532 | ID=Msa0383640-mRNA-1:cds;Parent=Msa0383640-mRNA-1 |
| chr3_1 | CDS | 86641305 | 86642048 | 86641305 | ID=Msa0383640-mRNA-1:cds;Parent=Msa0383640-mRNA-1 |
| chr3_1 | CDS | 86642146 | 86642339 | 86642146 | ID=Msa0383640-mRNA-1:cds;Parent=Msa0383640-mRNA-1 |
| chr3_1 | CDS | 86642451 | 86642640 | 86642451 | ID=Msa0383640-mRNA-1:cds;Parent=Msa0383640-mRNA-1 |
| chr3_1 | CDS | 86642728 | 86642830 | 86642728 | ID=Msa0383640-mRNA-1:cds;Parent=Msa0383640-mRNA-1 |
| chr3_1 | CDS | 86642914 | 86643059 | 86642914 | ID=Msa0383640-mRNA-1:cds;Parent=Msa0383640-mRNA-1 |
| chr3_1 | three_prime_UTR | 86643060 | 86643417 | 86643060 | ID=Msa0383640-mRNA-1:three_prime_utr;Parent=Msa0383640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
