AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154320


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154320 MtrunA17_Chr7g0245261 97.458 354 8 1 4 357 1 353 0.0 687
Msa1154320 MtrunA17_Chr7g0245291 76.540 341 67 5 2 341 17 345 1.46e-165 466
Msa1154320 MtrunA17_Chr7g0240091 34.934 229 129 8 111 322 223 448 6.29e-30 119
Msa1154320 MtrunA17_Chr4g0020011 33.333 243 142 6 96 322 139 377 2.32e-28 114
Msa1154320 MtrunA17_Chr2g0320711 31.739 230 135 8 111 322 210 435 9.69e-24 101
Msa1154320 MtrunA17_Chr4g0039291 30.568 229 142 4 109 322 162 388 2.66e-23 99.8
Msa1154320 MtrunA17_Chr3g0090071 29.825 228 143 6 109 322 163 387 5.69e-22 95.9
Msa1154320 MtrunA17_Chr3g0114241 29.661 236 145 6 107 322 482 716 7.81e-21 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154320 AT3G08640.1 67.578 256 73 2 92 345 90 337 6.46e-124 360
Msa1154320 AT3G08630.1 72.581 248 63 3 100 345 95 339 5.15e-123 358
Msa1154320 AT2G37860.3 34.959 246 137 10 97 322 190 432 4.54e-30 119
Msa1154320 AT2G37860.4 34.959 246 137 10 97 322 190 432 4.54e-30 119
Msa1154320 AT5G12470.1 33.913 230 137 5 109 324 157 385 1.88e-27 111
Msa1154320 AT5G22790.1 34.498 229 131 7 111 322 207 433 1.49e-26 109
Msa1154320 AT3G56140.2 27.839 273 169 8 107 352 255 526 6.07e-21 94.4
Msa1154320 AT3G56140.1 27.839 273 169 8 107 352 474 745 1.21e-20 94.0
Msa1154320 AT3G56140.3 27.839 273 169 8 107 352 474 745 1.21e-20 94.0
Msa1154320 AT2G40400.2 28.270 237 149 6 107 323 465 700 2.04e-19 90.1
Msa1154320 AT2G40400.1 28.270 237 149 6 107 323 465 700 2.04e-19 90.1
Msa1154320 AT2G40400.3 27.273 187 118 4 107 276 465 650 3.66e-14 74.3
Msa1154320 AT2G37860.2 33.544 158 89 7 98 240 191 347 5.42e-14 72.8
Msa1154320 AT2G37860.1 33.544 158 89 7 98 240 191 347 5.42e-14 72.8

Find 119 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGGCCATGTATTGGATTT+TGG 0.160598 7_4:-41732534 Msa1154320:three_prime_UTR
AAATCAAAAGATTCGTCTTT+TGG 0.178684 7_4:-41733532 Msa1154320:CDS
GGATATTTGGTACAAAATTT+TGG 0.195386 7_4:-41732615 Msa1154320:three_prime_UTR
TCTCACTTGGGCTGCTCATA+TGG 0.219592 7_4:-41733035 Msa1154320:CDS
GGTGTTACTGCTTGTGTCTT+AGG 0.224033 7_4:-41733421 Msa1154320:CDS
GTAGATTGAGATGGGATATT+TGG 0.235033 7_4:-41732628 Msa1154320:three_prime_UTR
TGCTTGTGTCTTAGGTGATA+TGG 0.238811 7_4:-41733413 Msa1154320:CDS
ATTGTGCAACATCAATAATT+TGG 0.249725 7_4:-41732328 Msa1154320:three_prime_UTR
ATGGCTTCAAGGCCTAATTT+TGG 0.265088 7_4:-41733394 Msa1154320:CDS
AGGAGTGGTGGAGGTGGTGG+TGG 0.265858 7_4:-41733601 Msa1154320:CDS
CTTAGGTACCAAACACTAAA+TGG 0.273009 7_4:-41732998 Msa1154320:CDS
AGTTCATTCAAACCAAAATT+AGG 0.283658 7_4:+41733382 None:intergenic
CTACTCAAATGAAAATGTTT+TGG 0.284586 7_4:-41732500 Msa1154320:three_prime_UTR
GGGTTTGGTGCTGGTCTTGC+TGG 0.288595 7_4:-41733151 Msa1154320:CDS
AAGGGAAAGGGAGGAGGCTT+TGG 0.288917 7_4:-41732792 Msa1154320:CDS
TGATCCACAGTTTCCTTTCA+AGG 0.295775 7_4:-41733464 Msa1154320:CDS
GTGGTGGTGGAAGTGAAAAT+TGG 0.309300 7_4:-41733585 Msa1154320:CDS
GATTAAGATGAGGAAGAAAA+TGG 0.310266 7_4:-41733107 Msa1154320:CDS
TTCACTTTGTTGATGTTGTT+TGG 0.316535 7_4:+41732759 None:intergenic
TTGTTTGGTGTCTCAAAGTT+TGG 0.325183 7_4:+41733082 None:intergenic
AGTCCTCGGTGTTGGTGCTT+AGG 0.330475 7_4:-41732931 Msa1154320:CDS
TTTCACACTTATGTATCTAT+TGG 0.333696 7_4:-41733317 Msa1154320:CDS
AATTTGTCACCTTATTGTTC+AGG 0.334409 7_4:+41732559 None:intergenic
CTTTACTCAATTCTCTCACT+TGG 0.338283 7_4:-41733048 Msa1154320:CDS
CTCACTTGGGCTGCTCATAT+GGG 0.340036 7_4:-41733034 Msa1154320:CDS
AGTGGTGGAGGTGGTGGTGG+TGG 0.340666 7_4:-41733598 Msa1154320:CDS
AAAGTATCACATATCTAGTT+TGG 0.346528 7_4:-41732393 Msa1154320:three_prime_UTR
AGGGTTGTGAACAATGTTCT+TGG 0.363107 7_4:-41732911 Msa1154320:CDS
GGCTCAAACATGTGACTCTT+AGG 0.367133 7_4:+41733241 None:intergenic
GTCCTCGGTGTTGGTGCTTA+GGG 0.370179 7_4:-41732930 Msa1154320:CDS
TATCTATTGGCACCAACATT+AGG 0.370401 7_4:-41733304 Msa1154320:CDS
TTAGGTACTTTGGTGTATAA+AGG 0.371386 7_4:-41733193 Msa1154320:CDS
TGGTGGTGGAAGTGAAAATT+GGG 0.371524 7_4:-41733584 Msa1154320:CDS
GGTAGGAGTGGTGGAGGTGG+TGG 0.373035 7_4:-41733604 Msa1154320:CDS
GCTGCTGTTGGGTTTGGTGC+TGG 0.378702 7_4:-41733160 Msa1154320:CDS
TGGGTTTCAGCAGTAATCTT+AGG 0.384948 7_4:-41733015 Msa1154320:CDS
AAATTAGTATGGCCATGTAT+TGG 0.386332 7_4:-41732541 Msa1154320:three_prime_UTR
AAATTACGACCTGAACAATA+AGG 0.386891 7_4:-41732568 Msa1154320:three_prime_UTR
ATTGGATAGGTTAGGTACTT+TGG 0.391020 7_4:-41733203 Msa1154320:CDS
ACTCAGCACCATTTAGTGTT+TGG 0.392898 7_4:+41732990 None:intergenic
TTGACAGGGTCACAGAGTTC+TGG 0.398819 7_4:-41732860 Msa1154320:CDS
ACTCACCTATCCAACAATAT+TGG 0.399312 7_4:+41732700 None:intergenic
ATAGCTTTGACCAATATTGT+TGG 0.399803 7_4:-41732710 Msa1154320:three_prime_UTR
AATAAGGTGACAAATTAGTA+TGG 0.405338 7_4:-41732552 Msa1154320:three_prime_UTR
ACATATCTAGTTTGGAGTAT+TGG 0.405801 7_4:-41732385 Msa1154320:three_prime_UTR
GCTGGTACAGCACTTTCAAA+TGG 0.406836 7_4:-41733133 Msa1154320:CDS
TTTCAACCTTTGAGGCAAAT+GGG 0.407646 7_4:+41733669 None:intergenic
AAAGTAGGTGGAGCTTTGTT+TGG 0.417477 7_4:+41733067 None:intergenic
TTCATTTGAGTAGGTGGTGG+GGG 0.430102 7_4:+41732510 None:intergenic
TTCTGAATGGATGGAGATCA+AGG 0.437567 7_4:-41733495 Msa1154320:CDS
AGTGGTAGGAGTGGTGGAGG+TGG 0.438626 7_4:-41733607 Msa1154320:CDS
GGACAAGATGCAAAGATTGC+AGG 0.441836 7_4:+41733262 None:intergenic
GGTTGAAAGGGAAAGGGAGG+AGG 0.442157 7_4:-41732798 Msa1154320:CDS
TTGAGAAGGTTGAAAGGGAA+AGG 0.445930 7_4:-41732805 Msa1154320:CDS
TCTTAGGTGATATGGCTTCA+AGG 0.452850 7_4:-41733405 Msa1154320:CDS
AGGCAAATGGGGTGATGGGT+TGG 0.454846 7_4:+41733681 None:intergenic
TTTAGTTTATTGGATAGGTT+AGG 0.459730 7_4:-41733211 Msa1154320:CDS
GTGAGAGAATTGAGTAAAGT+AGG 0.460473 7_4:+41733052 None:intergenic
TTTGACCAATATTGTTGGAT+AGG 0.460487 7_4:-41732705 Msa1154320:three_prime_UTR
CTGGTACAGCACTTTCAAAT+GGG 0.460536 7_4:-41733132 Msa1154320:CDS
GGTAGTGGTAGGAGTGGTGG+AGG 0.463979 7_4:-41733610 Msa1154320:CDS
TCCTTTAGCATTCAAGTCCT+CGG 0.468351 7_4:-41732945 Msa1154320:CDS
TGGTGAGAAGCCATCACAAT+TGG 0.468522 7_4:-41732840 Msa1154320:CDS
TGAGAAGGTTGAAAGGGAAA+GGG 0.469805 7_4:-41732804 Msa1154320:CDS
GGTGGTAGTGGTAGGAGTGG+TGG 0.474122 7_4:-41733613 Msa1154320:CDS
GGTGTTGGAAGTGGTGGTAG+TGG 0.474532 7_4:-41733625 Msa1154320:CDS
CATCACCCCATTTGCCTCAA+AGG 0.475084 7_4:-41733675 Msa1154320:CDS
ATTTCATTCGTCGGAGGTGA+TGG 0.478948 7_4:-41733646 Msa1154320:CDS
CTTTGAGGCAAATGGGGTGA+TGG 0.480889 7_4:+41733676 None:intergenic
AGTATTGGCTAAATAAAATC+AGG 0.483719 7_4:-41732370 Msa1154320:three_prime_UTR
GCTAATAATGATAATGATGA+TGG 0.498198 7_4:-41733556 Msa1154320:CDS
TTGGAAGTGGTGGTAGTGGT+AGG 0.501072 7_4:-41733621 Msa1154320:CDS
GCAGCAACAAATAAGAATGA+AGG 0.501919 7_4:-41732651 Msa1154320:three_prime_UTR
TTTACTCAATTCTCTCACTT+GGG 0.504007 7_4:-41733047 Msa1154320:CDS
GATTAGTTGAGAAGGTTGAA+AGG 0.504478 7_4:-41732811 Msa1154320:CDS
AGCATTCAAGTCCTCGGTGT+TGG 0.506923 7_4:-41732939 Msa1154320:CDS
AGATAATAATGGTCTAGAAA+AGG 0.508402 7_4:+41732421 None:intergenic
TCTTCCATCAAAACCTTGAA+AGG 0.510674 7_4:+41733451 None:intergenic
GGAGGTGATGGTGTTGGAAG+TGG 0.511084 7_4:-41733634 Msa1154320:CDS
GAATGAAGGGTAGATTGAGA+TGG 0.517733 7_4:-41732637 Msa1154320:three_prime_UTR
TTTCATTTGAGTAGGTGGTG+GGG 0.520107 7_4:+41732509 None:intergenic
AATGAAGGGTAGATTGAGAT+GGG 0.520611 7_4:-41732636 Msa1154320:three_prime_UTR
TTCGTCGGAGGTGATGGTGT+TGG 0.521987 7_4:-41733640 Msa1154320:CDS
GGAGGATGGATTAGTTGAGA+AGG 0.522393 7_4:-41732819 Msa1154320:CDS
CGGTTATTTAACTGTGGAGG+TGG 0.526642 7_4:+41733721 None:intergenic
TGGGTCTGTTTCTGAATGGA+TGG 0.532651 7_4:-41733504 Msa1154320:CDS
AAGAGTCACATGTTTGAGCC+TGG 0.535287 7_4:-41733238 Msa1154320:CDS
ACCGAGGACTTGAATGCTAA+AGG 0.535657 7_4:+41732944 None:intergenic
TGAGAAGCCATCACAATTGG+AGG 0.536920 7_4:-41732837 Msa1154320:CDS
AGGTTGAAAATTTCATTCGT+CGG 0.538429 7_4:-41733655 Msa1154320:CDS
ATTAGTTGAGAAGGTTGAAA+GGG 0.539886 7_4:-41732810 Msa1154320:CDS
GAAGGTTGAAAGGGAAAGGG+AGG 0.545788 7_4:-41732801 Msa1154320:CDS
GCAGAAGAAGCTCCTAATGT+TGG 0.549484 7_4:+41733292 None:intergenic
TTTAACTGTGGAGGTGGTGA+TGG 0.550712 7_4:+41733727 None:intergenic
GGTGGTGATGGTAATGATGA+TGG 0.550866 7_4:+41733739 None:intergenic
TGGTGAGATATATAGAAGTA+CGG 0.554630 7_4:+41733701 None:intergenic
TTTGAGGCAAATGGGGTGAT+GGG 0.555890 7_4:+41733677 None:intergenic
GGTGATGGTGTTGGAAGTGG+TGG 0.556383 7_4:-41733631 Msa1154320:CDS
AGAGAATTGAGTAAAGTAGG+TGG 0.556420 7_4:+41733055 None:intergenic
GTTGTGAACAATGTTCTTGG+AGG 0.557461 7_4:-41732908 Msa1154320:CDS
TCCAATAAACTAAAAGCACC+AGG 0.562983 7_4:+41733220 None:intergenic
CAGCAACAAATAAGAATGAA+GGG 0.573555 7_4:-41732650 Msa1154320:three_prime_UTR
AGTGGTGGTAGTGGTAGGAG+TGG 0.574745 7_4:-41733616 Msa1154320:CDS
TTCAACCTTTGAGGCAAATG+GGG 0.575584 7_4:+41733670 None:intergenic
AAATGGTGCTGAGTTTGTGT+TGG 0.577853 7_4:-41732981 Msa1154320:CDS
GCACGGCTTTGACCAGATGA+AGG 0.588877 7_4:+41733772 None:intergenic
GGGGTCCAAAATCCAATACA+TGG 0.592012 7_4:+41732529 None:intergenic
AATCCATCCTCCAATTGTGA+TGG 0.593843 7_4:+41732830 None:intergenic
CAAATGGGTTGATTAAGATG+AGG 0.597867 7_4:-41733117 Msa1154320:CDS
TTGAAAATTTCATTCGTCGG+AGG 0.599565 7_4:-41733652 Msa1154320:CDS
AAGCCATCACAATTGGAGGA+TGG 0.611487 7_4:-41732833 Msa1154320:CDS
GAAGTACGGTTATTTAACTG+TGG 0.640467 7_4:+41733715 None:intergenic
GTACGGTTATTTAACTGTGG+AGG 0.641560 7_4:+41733718 None:intergenic
AAAACCTTGAAAGGAAACTG+TGG 0.648612 7_4:+41733460 None:intergenic
GGTGGAAGTGAAAATTGGGG+TGG 0.659226 7_4:-41733580 Msa1154320:CDS
ATGATGGAAATGAAAGTGCA+CGG 0.675516 7_4:+41733755 None:intergenic
TCTGAATGGATGGAGATCAA+GGG 0.679128 7_4:-41733494 Msa1154320:CDS
GGTGGTGGAAGTGAAAATTG+GGG 0.698233 7_4:-41733583 Msa1154320:CDS
AACCCTAAGCACCAACACCG+AGG 0.721627 7_4:+41732928 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTTCAAAAAAAGAT+CGG + chr7_4:41732467-41732486 None:intergenic 10.0%
!! AAAAAATTTCAAAAAAAGAT+CGG + chr7_4:41732467-41732486 None:intergenic 10.0%
!!! TGTTTTTTTCTTCTAATTTT+TGG - chr7_4:41732596-41732615 Msa1154320:three_prime_UTR 15.0%
!!! TACTTTTACAAAGATAATAA+TGG + chr7_4:41734206-41734225 None:intergenic 15.0%
!!! TGTTTTTTTCTTCTAATTTT+TGG - chr7_4:41732596-41732615 Msa1154320:three_prime_UTR 15.0%
!!! TACTTTTACAAAGATAATAA+TGG + chr7_4:41734206-41734225 None:intergenic 15.0%
!!! TTTAGTTTTTCTGAATTTTC+TGG - chr7_4:41733940-41733959 Msa1154320:intron 20.0%
!!! AAATGAAAATGTTTTGGTTT+TGG - chr7_4:41734119-41734138 Msa1154320:intron 20.0%
!!! TTTAGTTTTTCTGAATTTTC+TGG - chr7_4:41733940-41733959 Msa1154320:intron 20.0%
!!! AAATGAAAATGTTTTGGTTT+TGG - chr7_4:41734119-41734138 Msa1154320:intron 20.0%
!!! TGTTTTTCAGAGAAAGAATT+AGG + chr7_4:41732358-41732377 None:intergenic 25.0%
!! AATGAAATTTTCAACCTTTG+AGG + chr7_4:41732955-41732974 None:intergenic 25.0%
!! GCTAATAATGATAATGATGA+TGG - chr7_4:41733057-41733076 Msa1154320:CDS 25.0%
!! AAATCAAAAGATTCGTCTTT+TGG - chr7_4:41733081-41733100 Msa1154320:CDS 25.0%
!! AATCAAAAGATTCGTCTTTT+GGG - chr7_4:41733082-41733101 Msa1154320:CDS 25.0%
! AGTTCATTCAAACCAAAATT+AGG + chr7_4:41733234-41733253 None:intergenic 25.0%
! TTTCACACTTATGTATCTAT+TGG - chr7_4:41733296-41733315 Msa1154320:CDS 25.0%
!! TTTAGTTTATTGGATAGGTT+AGG - chr7_4:41733402-41733421 Msa1154320:CDS 25.0%
!! GGATATTTGGTACAAAATTT+TGG - chr7_4:41733998-41734017 Msa1154320:intron 25.0%
! AATAAGGTGACAAATTAGTA+TGG - chr7_4:41734061-41734080 Msa1154320:intron 25.0%
!! CAAAACATTTTCATTTGAGT+AGG + chr7_4:41734115-41734134 None:intergenic 25.0%
!! CTACTCAAATGAAAATGTTT+TGG - chr7_4:41734113-41734132 Msa1154320:intron 25.0%
!!! TTTGTTTCTTTTCTATCAGT+AGG - chr7_4:41734159-41734178 Msa1154320:intron 25.0%
! AGATAATAATGGTCTAGAAA+AGG + chr7_4:41734195-41734214 None:intergenic 25.0%
!! AAAGTATCACATATCTAGTT+TGG - chr7_4:41734220-41734239 Msa1154320:intron 25.0%
!!! AGTATTGGCTAAATAAAATC+AGG - chr7_4:41734243-41734262 Msa1154320:intron 25.0%
! ATTGTGCAACATCAATAATT+TGG - chr7_4:41734285-41734304 Msa1154320:intron 25.0%
!!! TGTTTTTCAGAGAAAGAATT+AGG + chr7_4:41732358-41732377 None:intergenic 25.0%
!! AATGAAATTTTCAACCTTTG+AGG + chr7_4:41732955-41732974 None:intergenic 25.0%
!! GCTAATAATGATAATGATGA+TGG - chr7_4:41733057-41733076 Msa1154320:CDS 25.0%
!! AAATCAAAAGATTCGTCTTT+TGG - chr7_4:41733081-41733100 Msa1154320:CDS 25.0%
!! AATCAAAAGATTCGTCTTTT+GGG - chr7_4:41733082-41733101 Msa1154320:CDS 25.0%
! AGTTCATTCAAACCAAAATT+AGG + chr7_4:41733234-41733253 None:intergenic 25.0%
! TTTCACACTTATGTATCTAT+TGG - chr7_4:41733296-41733315 Msa1154320:CDS 25.0%
!! TTTAGTTTATTGGATAGGTT+AGG - chr7_4:41733402-41733421 Msa1154320:CDS 25.0%
!! GGATATTTGGTACAAAATTT+TGG - chr7_4:41733998-41734017 Msa1154320:intron 25.0%
! AATAAGGTGACAAATTAGTA+TGG - chr7_4:41734061-41734080 Msa1154320:intron 25.0%
!! CAAAACATTTTCATTTGAGT+AGG + chr7_4:41734115-41734134 None:intergenic 25.0%
!! CTACTCAAATGAAAATGTTT+TGG - chr7_4:41734113-41734132 Msa1154320:intron 25.0%
!!! TTTGTTTCTTTTCTATCAGT+AGG - chr7_4:41734159-41734178 Msa1154320:intron 25.0%
! AGATAATAATGGTCTAGAAA+AGG + chr7_4:41734195-41734214 None:intergenic 25.0%
!! AAAGTATCACATATCTAGTT+TGG - chr7_4:41734220-41734239 Msa1154320:intron 25.0%
!!! AGTATTGGCTAAATAAAATC+AGG - chr7_4:41734243-41734262 Msa1154320:intron 25.0%
! ATTGTGCAACATCAATAATT+TGG - chr7_4:41734285-41734304 Msa1154320:intron 25.0%
TGGTGAGATATATAGAAGTA+CGG + chr7_4:41732915-41732934 None:intergenic 30.0%
AGGTTGAAAATTTCATTCGT+CGG - chr7_4:41732958-41732977 Msa1154320:CDS 30.0%
!!! GTGCTTTTAGTTTATTGGAT+AGG - chr7_4:41733397-41733416 Msa1154320:CDS 30.0%
! TTAGGTACTTTGGTGTATAA+AGG - chr7_4:41733420-41733439 Msa1154320:CDS 30.0%
GATTAAGATGAGGAAGAAAA+TGG - chr7_4:41733506-41733525 Msa1154320:CDS 30.0%
TTTACTCAATTCTCTCACTT+GGG - chr7_4:41733566-41733585 Msa1154320:CDS 30.0%
ATTAGTTGAGAAGGTTGAAA+GGG - chr7_4:41733803-41733822 Msa1154320:CDS 30.0%
TTCACTTTGTTGATGTTGTT+TGG + chr7_4:41733857-41733876 None:intergenic 30.0%
!! ATAGCTTTGACCAATATTGT+TGG - chr7_4:41733903-41733922 Msa1154320:intron 30.0%
TTTGACCAATATTGTTGGAT+AGG - chr7_4:41733908-41733927 Msa1154320:intron 30.0%
CAGCAACAAATAAGAATGAA+GGG - chr7_4:41733963-41733982 Msa1154320:intron 30.0%
!! ATTTGGTACAAAATTTTGGC+AGG - chr7_4:41734002-41734021 Msa1154320:intron 30.0%
!! AAAATTTTGGCAGGTTTTGA+TGG - chr7_4:41734011-41734030 Msa1154320:intron 30.0%
AAATTACGACCTGAACAATA+AGG - chr7_4:41734045-41734064 Msa1154320:intron 30.0%
AATTTGTCACCTTATTGTTC+AGG + chr7_4:41734057-41734076 None:intergenic 30.0%
AAATTAGTATGGCCATGTAT+TGG - chr7_4:41734072-41734091 Msa1154320:intron 30.0%
! AACATTTTCATTTGAGTAGG+TGG + chr7_4:41734112-41734131 None:intergenic 30.0%
! ACATATCTAGTTTGGAGTAT+TGG - chr7_4:41734228-41734247 Msa1154320:intron 30.0%
TGGTGAGATATATAGAAGTA+CGG + chr7_4:41732915-41732934 None:intergenic 30.0%
AGGTTGAAAATTTCATTCGT+CGG - chr7_4:41732958-41732977 Msa1154320:CDS 30.0%
!!! GTGCTTTTAGTTTATTGGAT+AGG - chr7_4:41733397-41733416 Msa1154320:CDS 30.0%
! TTAGGTACTTTGGTGTATAA+AGG - chr7_4:41733420-41733439 Msa1154320:CDS 30.0%
GATTAAGATGAGGAAGAAAA+TGG - chr7_4:41733506-41733525 Msa1154320:CDS 30.0%
TTTACTCAATTCTCTCACTT+GGG - chr7_4:41733566-41733585 Msa1154320:CDS 30.0%
ATTAGTTGAGAAGGTTGAAA+GGG - chr7_4:41733803-41733822 Msa1154320:CDS 30.0%
TTCACTTTGTTGATGTTGTT+TGG + chr7_4:41733857-41733876 None:intergenic 30.0%
!! ATAGCTTTGACCAATATTGT+TGG - chr7_4:41733903-41733922 Msa1154320:intron 30.0%
TTTGACCAATATTGTTGGAT+AGG - chr7_4:41733908-41733927 Msa1154320:intron 30.0%
CAGCAACAAATAAGAATGAA+GGG - chr7_4:41733963-41733982 Msa1154320:intron 30.0%
!! ATTTGGTACAAAATTTTGGC+AGG - chr7_4:41734002-41734021 Msa1154320:intron 30.0%
!! AAAATTTTGGCAGGTTTTGA+TGG - chr7_4:41734011-41734030 Msa1154320:intron 30.0%
AAATTACGACCTGAACAATA+AGG - chr7_4:41734045-41734064 Msa1154320:intron 30.0%
AATTTGTCACCTTATTGTTC+AGG + chr7_4:41734057-41734076 None:intergenic 30.0%
AAATTAGTATGGCCATGTAT+TGG - chr7_4:41734072-41734091 Msa1154320:intron 30.0%
! AACATTTTCATTTGAGTAGG+TGG + chr7_4:41734112-41734131 None:intergenic 30.0%
! ACATATCTAGTTTGGAGTAT+TGG - chr7_4:41734228-41734247 Msa1154320:intron 30.0%
AACCTCAAACTGTAATGTTG+CGG + chr7_4:41732388-41732407 None:intergenic 35.0%
! TTTTTGTGATTACCTGGATC+TGG + chr7_4:41732443-41732462 None:intergenic 35.0%
! ATCGGATTTTTGTGATTACC+TGG + chr7_4:41732449-41732468 None:intergenic 35.0%
! ATGATGGAAATGAAAGTGCA+CGG + chr7_4:41732861-41732880 None:intergenic 35.0%
GAAGTACGGTTATTTAACTG+TGG + chr7_4:41732901-41732920 None:intergenic 35.0%
!! TTTCAACCTTTGAGGCAAAT+GGG + chr7_4:41732947-41732966 None:intergenic 35.0%
!!! TTTTCAACCTTTGAGGCAAA+TGG + chr7_4:41732948-41732967 None:intergenic 35.0%
TTGAAAATTTCATTCGTCGG+AGG - chr7_4:41732961-41732980 Msa1154320:CDS 35.0%
!!! AGATTCGTCTTTTGGGATTT+TGG - chr7_4:41733089-41733108 Msa1154320:CDS 35.0%
!!! GATTCGTCTTTTGGGATTTT+GGG - chr7_4:41733090-41733109 Msa1154320:CDS 35.0%
!!! ATTTTGGGTCTGTTTCTGAA+TGG - chr7_4:41733105-41733124 Msa1154320:CDS 35.0%
AAAACCTTGAAAGGAAACTG+TGG + chr7_4:41733156-41733175 None:intergenic 35.0%
!! GTTTCCTTTCAAGGTTTTGA+TGG - chr7_4:41733158-41733177 Msa1154320:CDS 35.0%
TCTTCCATCAAAACCTTGAA+AGG + chr7_4:41733165-41733184 None:intergenic 35.0%
!! GTGTTTTCAACTCTTGTTGT+TGG - chr7_4:41733261-41733280 Msa1154320:CDS 35.0%
TATCTATTGGCACCAACATT+AGG - chr7_4:41733309-41733328 Msa1154320:CDS 35.0%
!! TCCAATAAACTAAAAGCACC+AGG + chr7_4:41733396-41733415 None:intergenic 35.0%
ATTGGATAGGTTAGGTACTT+TGG - chr7_4:41733410-41733429 Msa1154320:CDS 35.0%
!! CAAATGGGTTGATTAAGATG+AGG - chr7_4:41733496-41733515 Msa1154320:CDS 35.0%
!! TTGTTTGGTGTCTCAAAGTT+TGG + chr7_4:41733534-41733553 None:intergenic 35.0%
AGAGAATTGAGTAAAGTAGG+TGG + chr7_4:41733561-41733580 None:intergenic 35.0%
GTGAGAGAATTGAGTAAAGT+AGG + chr7_4:41733564-41733583 None:intergenic 35.0%
CTTTACTCAATTCTCTCACT+TGG - chr7_4:41733565-41733584 Msa1154320:CDS 35.0%
CTTAGGTACCAAACACTAAA+TGG - chr7_4:41733615-41733634 Msa1154320:CDS 35.0%
! AGGAATGTCTTTTGTGGTTT+TGG - chr7_4:41733725-41733744 Msa1154320:CDS 35.0%
! GATTAGTTGAGAAGGTTGAA+AGG - chr7_4:41733802-41733821 Msa1154320:CDS 35.0%
ACTCACCTATCCAACAATAT+TGG + chr7_4:41733916-41733935 None:intergenic 35.0%
GCAGCAACAAATAAGAATGA+AGG - chr7_4:41733962-41733981 Msa1154320:intron 35.0%
AATGAAGGGTAGATTGAGAT+GGG - chr7_4:41733977-41733996 Msa1154320:intron 35.0%
GTAGATTGAGATGGGATATT+TGG - chr7_4:41733985-41734004 Msa1154320:intron 35.0%
! TATGGCCATGTATTGGATTT+TGG - chr7_4:41734079-41734098 Msa1154320:intron 35.0%
! TTTTCATTTGAGTAGGTGGT+GGG + chr7_4:41734108-41734127 None:intergenic 35.0%
! ATTTTCATTTGAGTAGGTGG+TGG + chr7_4:41734109-41734128 None:intergenic 35.0%
AACCTCAAACTGTAATGTTG+CGG + chr7_4:41732388-41732407 None:intergenic 35.0%
! TTTTTGTGATTACCTGGATC+TGG + chr7_4:41732443-41732462 None:intergenic 35.0%
! ATCGGATTTTTGTGATTACC+TGG + chr7_4:41732449-41732468 None:intergenic 35.0%
! ATGATGGAAATGAAAGTGCA+CGG + chr7_4:41732861-41732880 None:intergenic 35.0%
GAAGTACGGTTATTTAACTG+TGG + chr7_4:41732901-41732920 None:intergenic 35.0%
!! TTTCAACCTTTGAGGCAAAT+GGG + chr7_4:41732947-41732966 None:intergenic 35.0%
!!! TTTTCAACCTTTGAGGCAAA+TGG + chr7_4:41732948-41732967 None:intergenic 35.0%
TTGAAAATTTCATTCGTCGG+AGG - chr7_4:41732961-41732980 Msa1154320:CDS 35.0%
!!! AGATTCGTCTTTTGGGATTT+TGG - chr7_4:41733089-41733108 Msa1154320:CDS 35.0%
!!! GATTCGTCTTTTGGGATTTT+GGG - chr7_4:41733090-41733109 Msa1154320:CDS 35.0%
!!! ATTTTGGGTCTGTTTCTGAA+TGG - chr7_4:41733105-41733124 Msa1154320:CDS 35.0%
AAAACCTTGAAAGGAAACTG+TGG + chr7_4:41733156-41733175 None:intergenic 35.0%
!! GTTTCCTTTCAAGGTTTTGA+TGG - chr7_4:41733158-41733177 Msa1154320:CDS 35.0%
TCTTCCATCAAAACCTTGAA+AGG + chr7_4:41733165-41733184 None:intergenic 35.0%
!! GTGTTTTCAACTCTTGTTGT+TGG - chr7_4:41733261-41733280 Msa1154320:CDS 35.0%
TATCTATTGGCACCAACATT+AGG - chr7_4:41733309-41733328 Msa1154320:CDS 35.0%
!! TCCAATAAACTAAAAGCACC+AGG + chr7_4:41733396-41733415 None:intergenic 35.0%
ATTGGATAGGTTAGGTACTT+TGG - chr7_4:41733410-41733429 Msa1154320:CDS 35.0%
!! CAAATGGGTTGATTAAGATG+AGG - chr7_4:41733496-41733515 Msa1154320:CDS 35.0%
!! TTGTTTGGTGTCTCAAAGTT+TGG + chr7_4:41733534-41733553 None:intergenic 35.0%
AGAGAATTGAGTAAAGTAGG+TGG + chr7_4:41733561-41733580 None:intergenic 35.0%
GTGAGAGAATTGAGTAAAGT+AGG + chr7_4:41733564-41733583 None:intergenic 35.0%
CTTTACTCAATTCTCTCACT+TGG - chr7_4:41733565-41733584 Msa1154320:CDS 35.0%
CTTAGGTACCAAACACTAAA+TGG - chr7_4:41733615-41733634 Msa1154320:CDS 35.0%
! AGGAATGTCTTTTGTGGTTT+TGG - chr7_4:41733725-41733744 Msa1154320:CDS 35.0%
! GATTAGTTGAGAAGGTTGAA+AGG - chr7_4:41733802-41733821 Msa1154320:CDS 35.0%
ACTCACCTATCCAACAATAT+TGG + chr7_4:41733916-41733935 None:intergenic 35.0%
GCAGCAACAAATAAGAATGA+AGG - chr7_4:41733962-41733981 Msa1154320:intron 35.0%
AATGAAGGGTAGATTGAGAT+GGG - chr7_4:41733977-41733996 Msa1154320:intron 35.0%
GTAGATTGAGATGGGATATT+TGG - chr7_4:41733985-41734004 Msa1154320:intron 35.0%
! TATGGCCATGTATTGGATTT+TGG - chr7_4:41734079-41734098 Msa1154320:intron 35.0%
! TTTTCATTTGAGTAGGTGGT+GGG + chr7_4:41734108-41734127 None:intergenic 35.0%
! ATTTTCATTTGAGTAGGTGG+TGG + chr7_4:41734109-41734128 None:intergenic 35.0%
GTACGGTTATTTAACTGTGG+AGG + chr7_4:41732898-41732917 None:intergenic 40.0%
!! TTCAACCTTTGAGGCAAATG+GGG + chr7_4:41732946-41732965 None:intergenic 40.0%
!! TGGTGGTGGAAGTGAAAATT+GGG - chr7_4:41733029-41733048 Msa1154320:CDS 40.0%
TTCTGAATGGATGGAGATCA+AGG - chr7_4:41733118-41733137 Msa1154320:CDS 40.0%
TCTGAATGGATGGAGATCAA+GGG - chr7_4:41733119-41733138 Msa1154320:CDS 40.0%
TGATCCACAGTTTCCTTTCA+AGG - chr7_4:41733149-41733168 Msa1154320:CDS 40.0%
!! CAAGGTTTTGATGGAAGAGT+TGG - chr7_4:41733167-41733186 Msa1154320:CDS 40.0%
!! GTTTTGATGGAAGAGTTGGT+TGG - chr7_4:41733171-41733190 Msa1154320:CDS 40.0%
TGCTTGTGTCTTAGGTGATA+TGG - chr7_4:41733200-41733219 Msa1154320:CDS 40.0%
TCTTAGGTGATATGGCTTCA+AGG - chr7_4:41733208-41733227 Msa1154320:CDS 40.0%
! ATGGCTTCAAGGCCTAATTT+TGG - chr7_4:41733219-41733238 Msa1154320:CDS 40.0%
!!! GCCTGGTGCTTTTAGTTTAT+TGG - chr7_4:41733392-41733411 Msa1154320:CDS 40.0%
!! GTACCATTTTTGCTGCTGTT+GGG - chr7_4:41733442-41733461 Msa1154320:CDS 40.0%
AAACCCAACAGCAGCAAAAA+TGG + chr7_4:41733448-41733467 None:intergenic 40.0%
! ATTTTTGCTGCTGTTGGGTT+TGG - chr7_4:41733447-41733466 Msa1154320:CDS 40.0%
CTGGTACAGCACTTTCAAAT+GGG - chr7_4:41733481-41733500 Msa1154320:CDS 40.0%
!! AAAGTAGGTGGAGCTTTGTT+TGG + chr7_4:41733549-41733568 None:intergenic 40.0%
TGGGTTTCAGCAGTAATCTT+AGG - chr7_4:41733598-41733617 Msa1154320:CDS 40.0%
ACTCAGCACCATTTAGTGTT+TGG + chr7_4:41733626-41733645 None:intergenic 40.0%
! AAATGGTGCTGAGTTTGTGT+TGG - chr7_4:41733632-41733651 Msa1154320:CDS 40.0%
TCCTTTAGCATTCAAGTCCT+CGG - chr7_4:41733668-41733687 Msa1154320:CDS 40.0%
AGGGTTGTGAACAATGTTCT+TGG - chr7_4:41733702-41733721 Msa1154320:CDS 40.0%
GTTGTGAACAATGTTCTTGG+AGG - chr7_4:41733705-41733724 Msa1154320:CDS 40.0%
! TCTTGGAGGAATGTCTTTTG+TGG - chr7_4:41733719-41733738 Msa1154320:CDS 40.0%
!!! TGTCTTTTGTGGTTTTGGCA+AGG - chr7_4:41733730-41733749 Msa1154320:CDS 40.0%
AATCCATCCTCCAATTGTGA+TGG + chr7_4:41733786-41733805 None:intergenic 40.0%
TTGAGAAGGTTGAAAGGGAA+AGG - chr7_4:41733808-41733827 Msa1154320:CDS 40.0%
TGAGAAGGTTGAAAGGGAAA+GGG - chr7_4:41733809-41733828 Msa1154320:CDS 40.0%
GAATGAAGGGTAGATTGAGA+TGG - chr7_4:41733976-41733995 Msa1154320:intron 40.0%
TTTCATTTGAGTAGGTGGTG+GGG + chr7_4:41734107-41734126 None:intergenic 40.0%
GTACGGTTATTTAACTGTGG+AGG + chr7_4:41732898-41732917 None:intergenic 40.0%
!! TTCAACCTTTGAGGCAAATG+GGG + chr7_4:41732946-41732965 None:intergenic 40.0%
!! TGGTGGTGGAAGTGAAAATT+GGG - chr7_4:41733029-41733048 Msa1154320:CDS 40.0%
TTCTGAATGGATGGAGATCA+AGG - chr7_4:41733118-41733137 Msa1154320:CDS 40.0%
TCTGAATGGATGGAGATCAA+GGG - chr7_4:41733119-41733138 Msa1154320:CDS 40.0%
TGATCCACAGTTTCCTTTCA+AGG - chr7_4:41733149-41733168 Msa1154320:CDS 40.0%
!! CAAGGTTTTGATGGAAGAGT+TGG - chr7_4:41733167-41733186 Msa1154320:CDS 40.0%
!! GTTTTGATGGAAGAGTTGGT+TGG - chr7_4:41733171-41733190 Msa1154320:CDS 40.0%
TGCTTGTGTCTTAGGTGATA+TGG - chr7_4:41733200-41733219 Msa1154320:CDS 40.0%
TCTTAGGTGATATGGCTTCA+AGG - chr7_4:41733208-41733227 Msa1154320:CDS 40.0%
! ATGGCTTCAAGGCCTAATTT+TGG - chr7_4:41733219-41733238 Msa1154320:CDS 40.0%
!!! GCCTGGTGCTTTTAGTTTAT+TGG - chr7_4:41733392-41733411 Msa1154320:CDS 40.0%
!! GTACCATTTTTGCTGCTGTT+GGG - chr7_4:41733442-41733461 Msa1154320:CDS 40.0%
AAACCCAACAGCAGCAAAAA+TGG + chr7_4:41733448-41733467 None:intergenic 40.0%
! ATTTTTGCTGCTGTTGGGTT+TGG - chr7_4:41733447-41733466 Msa1154320:CDS 40.0%
CTGGTACAGCACTTTCAAAT+GGG - chr7_4:41733481-41733500 Msa1154320:CDS 40.0%
!! AAAGTAGGTGGAGCTTTGTT+TGG + chr7_4:41733549-41733568 None:intergenic 40.0%
TGGGTTTCAGCAGTAATCTT+AGG - chr7_4:41733598-41733617 Msa1154320:CDS 40.0%
ACTCAGCACCATTTAGTGTT+TGG + chr7_4:41733626-41733645 None:intergenic 40.0%
! AAATGGTGCTGAGTTTGTGT+TGG - chr7_4:41733632-41733651 Msa1154320:CDS 40.0%
TCCTTTAGCATTCAAGTCCT+CGG - chr7_4:41733668-41733687 Msa1154320:CDS 40.0%
AGGGTTGTGAACAATGTTCT+TGG - chr7_4:41733702-41733721 Msa1154320:CDS 40.0%
GTTGTGAACAATGTTCTTGG+AGG - chr7_4:41733705-41733724 Msa1154320:CDS 40.0%
! TCTTGGAGGAATGTCTTTTG+TGG - chr7_4:41733719-41733738 Msa1154320:CDS 40.0%
!!! TGTCTTTTGTGGTTTTGGCA+AGG - chr7_4:41733730-41733749 Msa1154320:CDS 40.0%
AATCCATCCTCCAATTGTGA+TGG + chr7_4:41733786-41733805 None:intergenic 40.0%
TTGAGAAGGTTGAAAGGGAA+AGG - chr7_4:41733808-41733827 Msa1154320:CDS 40.0%
TGAGAAGGTTGAAAGGGAAA+GGG - chr7_4:41733809-41733828 Msa1154320:CDS 40.0%
GAATGAAGGGTAGATTGAGA+TGG - chr7_4:41733976-41733995 Msa1154320:intron 40.0%
TTTCATTTGAGTAGGTGGTG+GGG + chr7_4:41734107-41734126 None:intergenic 40.0%
TAGGAGAGAAGAGAGTGAGT+TGG + chr7_4:41732339-41732358 None:intergenic 45.0%
TGCCGCAACATTACAGTTTG+AGG - chr7_4:41732383-41732402 Msa1154320:three_prime_UTR 45.0%
GCGTGAAAGATTCTCAGCAA+TGG + chr7_4:41732534-41732553 None:intergenic 45.0%
AAACACCGTGATTCACGTAC+CGG + chr7_4:41732581-41732600 None:intergenic 45.0%
! CTGCGTTTTACACCTTCATC+TGG - chr7_4:41732829-41732848 Msa1154320:CDS 45.0%
!! GGTGGTGATGGTAATGATGA+TGG + chr7_4:41732877-41732896 None:intergenic 45.0%
TTTAACTGTGGAGGTGGTGA+TGG + chr7_4:41732889-41732908 None:intergenic 45.0%
CGGTTATTTAACTGTGGAGG+TGG + chr7_4:41732895-41732914 None:intergenic 45.0%
! TTTGAGGCAAATGGGGTGAT+GGG + chr7_4:41732939-41732958 None:intergenic 45.0%
ATTTCATTCGTCGGAGGTGA+TGG - chr7_4:41732967-41732986 Msa1154320:CDS 45.0%
!! GTGGTGGTGGAAGTGAAAAT+TGG - chr7_4:41733028-41733047 Msa1154320:CDS 45.0%
!! GGTGGTGGAAGTGAAAATTG+GGG - chr7_4:41733030-41733049 Msa1154320:CDS 45.0%
!! TGGGTCTGTTTCTGAATGGA+TGG - chr7_4:41733109-41733128 Msa1154320:CDS 45.0%
!! GGTGTTACTGCTTGTGTCTT+AGG - chr7_4:41733192-41733211 Msa1154320:CDS 45.0%
GCAGAAGAAGCTCCTAATGT+TGG + chr7_4:41733324-41733343 None:intergenic 45.0%
GGACAAGATGCAAAGATTGC+AGG + chr7_4:41733354-41733373 None:intergenic 45.0%
GGCTCAAACATGTGACTCTT+AGG + chr7_4:41733375-41733394 None:intergenic 45.0%
AAGAGTCACATGTTTGAGCC+TGG - chr7_4:41733375-41733394 Msa1154320:CDS 45.0%
!! GGTACCATTTTTGCTGCTGT+TGG - chr7_4:41733441-41733460 Msa1154320:CDS 45.0%
GCTGGTACAGCACTTTCAAA+TGG - chr7_4:41733480-41733499 Msa1154320:CDS 45.0%
ACCGAGGACTTGAATGCTAA+AGG + chr7_4:41733672-41733691 None:intergenic 45.0%
!!! TGGTTTTGGCAAGGTTGACA+GGG - chr7_4:41733739-41733758 Msa1154320:CDS 45.0%
TGGTGAGAAGCCATCACAAT+TGG - chr7_4:41733773-41733792 Msa1154320:CDS 45.0%
TGAGAAGCCATCACAATTGG+AGG - chr7_4:41733776-41733795 Msa1154320:CDS 45.0%
AAGCCATCACAATTGGAGGA+TGG - chr7_4:41733780-41733799 Msa1154320:CDS 45.0%
!! GGAGGATGGATTAGTTGAGA+AGG - chr7_4:41733794-41733813 Msa1154320:CDS 45.0%
GGGGTCCAAAATCCAATACA+TGG + chr7_4:41734087-41734106 None:intergenic 45.0%
! TTCATTTGAGTAGGTGGTGG+GGG + chr7_4:41734106-41734125 None:intergenic 45.0%
TAGGAGAGAAGAGAGTGAGT+TGG + chr7_4:41732339-41732358 None:intergenic 45.0%
TGCCGCAACATTACAGTTTG+AGG - chr7_4:41732383-41732402 Msa1154320:three_prime_UTR 45.0%
GCGTGAAAGATTCTCAGCAA+TGG + chr7_4:41732534-41732553 None:intergenic 45.0%
AAACACCGTGATTCACGTAC+CGG + chr7_4:41732581-41732600 None:intergenic 45.0%
! CTGCGTTTTACACCTTCATC+TGG - chr7_4:41732829-41732848 Msa1154320:CDS 45.0%
!! GGTGGTGATGGTAATGATGA+TGG + chr7_4:41732877-41732896 None:intergenic 45.0%
TTTAACTGTGGAGGTGGTGA+TGG + chr7_4:41732889-41732908 None:intergenic 45.0%
CGGTTATTTAACTGTGGAGG+TGG + chr7_4:41732895-41732914 None:intergenic 45.0%
! TTTGAGGCAAATGGGGTGAT+GGG + chr7_4:41732939-41732958 None:intergenic 45.0%
ATTTCATTCGTCGGAGGTGA+TGG - chr7_4:41732967-41732986 Msa1154320:CDS 45.0%
!! GTGGTGGTGGAAGTGAAAAT+TGG - chr7_4:41733028-41733047 Msa1154320:CDS 45.0%
!! GGTGGTGGAAGTGAAAATTG+GGG - chr7_4:41733030-41733049 Msa1154320:CDS 45.0%
!! TGGGTCTGTTTCTGAATGGA+TGG - chr7_4:41733109-41733128 Msa1154320:CDS 45.0%
!! GGTGTTACTGCTTGTGTCTT+AGG - chr7_4:41733192-41733211 Msa1154320:CDS 45.0%
GCAGAAGAAGCTCCTAATGT+TGG + chr7_4:41733324-41733343 None:intergenic 45.0%
GGACAAGATGCAAAGATTGC+AGG + chr7_4:41733354-41733373 None:intergenic 45.0%
GGCTCAAACATGTGACTCTT+AGG + chr7_4:41733375-41733394 None:intergenic 45.0%
AAGAGTCACATGTTTGAGCC+TGG - chr7_4:41733375-41733394 Msa1154320:CDS 45.0%
!! GGTACCATTTTTGCTGCTGT+TGG - chr7_4:41733441-41733460 Msa1154320:CDS 45.0%
GCTGGTACAGCACTTTCAAA+TGG - chr7_4:41733480-41733499 Msa1154320:CDS 45.0%
ACCGAGGACTTGAATGCTAA+AGG + chr7_4:41733672-41733691 None:intergenic 45.0%
!!! TGGTTTTGGCAAGGTTGACA+GGG - chr7_4:41733739-41733758 Msa1154320:CDS 45.0%
TGGTGAGAAGCCATCACAAT+TGG - chr7_4:41733773-41733792 Msa1154320:CDS 45.0%
TGAGAAGCCATCACAATTGG+AGG - chr7_4:41733776-41733795 Msa1154320:CDS 45.0%
AAGCCATCACAATTGGAGGA+TGG - chr7_4:41733780-41733799 Msa1154320:CDS 45.0%
!! GGAGGATGGATTAGTTGAGA+AGG - chr7_4:41733794-41733813 Msa1154320:CDS 45.0%
GGGGTCCAAAATCCAATACA+TGG + chr7_4:41734087-41734106 None:intergenic 45.0%
! TTCATTTGAGTAGGTGGTGG+GGG + chr7_4:41734106-41734125 None:intergenic 45.0%
! GAGAGAAGAGAGTGAGTTGG+TGG + chr7_4:41732336-41732355 None:intergenic 50.0%
!! CTTTGAGGCAAATGGGGTGA+TGG + chr7_4:41732940-41732959 None:intergenic 50.0%
CATCACCCCATTTGCCTCAA+AGG - chr7_4:41732938-41732957 Msa1154320:CDS 50.0%
!! TTGGAAGTGGTGGTAGTGGT+AGG - chr7_4:41732992-41733011 Msa1154320:CDS 50.0%
GGTGGAAGTGAAAATTGGGG+TGG - chr7_4:41733033-41733052 Msa1154320:CDS 50.0%
TCTCACTTGGGCTGCTCATA+TGG - chr7_4:41733578-41733597 Msa1154320:CDS 50.0%
CTCACTTGGGCTGCTCATAT+GGG - chr7_4:41733579-41733598 Msa1154320:CDS 50.0%
! AGCATTCAAGTCCTCGGTGT+TGG - chr7_4:41733674-41733693 Msa1154320:CDS 50.0%
!!! GTGGTTTTGGCAAGGTTGAC+AGG - chr7_4:41733738-41733757 Msa1154320:CDS 50.0%
TTGACAGGGTCACAGAGTTC+TGG - chr7_4:41733753-41733772 Msa1154320:CDS 50.0%
GAAGGTTGAAAGGGAAAGGG+AGG - chr7_4:41733812-41733831 Msa1154320:intron 50.0%
! GAGAGAAGAGAGTGAGTTGG+TGG + chr7_4:41732336-41732355 None:intergenic 50.0%
!! CTTTGAGGCAAATGGGGTGA+TGG + chr7_4:41732940-41732959 None:intergenic 50.0%
CATCACCCCATTTGCCTCAA+AGG - chr7_4:41732938-41732957 Msa1154320:CDS 50.0%
!! TTGGAAGTGGTGGTAGTGGT+AGG - chr7_4:41732992-41733011 Msa1154320:CDS 50.0%
GGTGGAAGTGAAAATTGGGG+TGG - chr7_4:41733033-41733052 Msa1154320:CDS 50.0%
TCTCACTTGGGCTGCTCATA+TGG - chr7_4:41733578-41733597 Msa1154320:CDS 50.0%
CTCACTTGGGCTGCTCATAT+GGG - chr7_4:41733579-41733598 Msa1154320:CDS 50.0%
! AGCATTCAAGTCCTCGGTGT+TGG - chr7_4:41733674-41733693 Msa1154320:CDS 50.0%
!!! GTGGTTTTGGCAAGGTTGAC+AGG - chr7_4:41733738-41733757 Msa1154320:CDS 50.0%
TTGACAGGGTCACAGAGTTC+TGG - chr7_4:41733753-41733772 Msa1154320:CDS 50.0%
GAAGGTTGAAAGGGAAAGGG+AGG - chr7_4:41733812-41733831 Msa1154320:intron 50.0%
ATCTGGTGTGAGAGAGCGGA+AGG + chr7_4:41732426-41732445 None:intergenic 55.0%
CTGGATCTGGTGTGAGAGAG+CGG + chr7_4:41732430-41732449 None:intergenic 55.0%
ACGCAACGCCGTCATGTATG+CGG - chr7_4:41732550-41732569 Msa1154320:three_prime_UTR 55.0%
! GCACGGCTTTGACCAGATGA+AGG + chr7_4:41732844-41732863 None:intergenic 55.0%
!! AGGCAAATGGGGTGATGGGT+TGG + chr7_4:41732935-41732954 None:intergenic 55.0%
! TTCGTCGGAGGTGATGGTGT+TGG - chr7_4:41732973-41732992 Msa1154320:CDS 55.0%
! GGAGGTGATGGTGTTGGAAG+TGG - chr7_4:41732979-41732998 Msa1154320:CDS 55.0%
! GGTGATGGTGTTGGAAGTGG+TGG - chr7_4:41732982-41733001 Msa1154320:CDS 55.0%
! GGTGTTGGAAGTGGTGGTAG+TGG - chr7_4:41732988-41733007 Msa1154320:CDS 55.0%
!! AGTGGTGGTAGTGGTAGGAG+TGG - chr7_4:41732997-41733016 Msa1154320:CDS 55.0%
!! AGTCCTCGGTGTTGGTGCTT+AGG - chr7_4:41733682-41733701 Msa1154320:CDS 55.0%
!! GTCCTCGGTGTTGGTGCTTA+GGG - chr7_4:41733683-41733702 Msa1154320:CDS 55.0%
AACCCTAAGCACCAACACCG+AGG + chr7_4:41733688-41733707 None:intergenic 55.0%
GGTTGAAAGGGAAAGGGAGG+AGG - chr7_4:41733815-41733834 Msa1154320:intron 55.0%
AAGGGAAAGGGAGGAGGCTT+TGG - chr7_4:41733821-41733840 Msa1154320:intron 55.0%
ATCTGGTGTGAGAGAGCGGA+AGG + chr7_4:41732426-41732445 None:intergenic 55.0%
CTGGATCTGGTGTGAGAGAG+CGG + chr7_4:41732430-41732449 None:intergenic 55.0%
ACGCAACGCCGTCATGTATG+CGG - chr7_4:41732550-41732569 Msa1154320:three_prime_UTR 55.0%
! GCACGGCTTTGACCAGATGA+AGG + chr7_4:41732844-41732863 None:intergenic 55.0%
!! AGGCAAATGGGGTGATGGGT+TGG + chr7_4:41732935-41732954 None:intergenic 55.0%
! TTCGTCGGAGGTGATGGTGT+TGG - chr7_4:41732973-41732992 Msa1154320:CDS 55.0%
! GGAGGTGATGGTGTTGGAAG+TGG - chr7_4:41732979-41732998 Msa1154320:CDS 55.0%
! GGTGATGGTGTTGGAAGTGG+TGG - chr7_4:41732982-41733001 Msa1154320:CDS 55.0%
! GGTGTTGGAAGTGGTGGTAG+TGG - chr7_4:41732988-41733007 Msa1154320:CDS 55.0%
!! AGTGGTGGTAGTGGTAGGAG+TGG - chr7_4:41732997-41733016 Msa1154320:CDS 55.0%
!! AGTCCTCGGTGTTGGTGCTT+AGG - chr7_4:41733682-41733701 Msa1154320:CDS 55.0%
!! GTCCTCGGTGTTGGTGCTTA+GGG - chr7_4:41733683-41733702 Msa1154320:CDS 55.0%
AACCCTAAGCACCAACACCG+AGG + chr7_4:41733688-41733707 None:intergenic 55.0%
GGTTGAAAGGGAAAGGGAGG+AGG - chr7_4:41733815-41733834 Msa1154320:intron 55.0%
AAGGGAAAGGGAGGAGGCTT+TGG - chr7_4:41733821-41733840 Msa1154320:intron 55.0%
CGCTCTCTCACACCAGATCC+AGG - chr7_4:41732428-41732447 Msa1154320:three_prime_UTR 60.0%
CAACGCCGTCATGTATGCGG+CGG - chr7_4:41732553-41732572 Msa1154320:three_prime_UTR 60.0%
!! GGTGGTAGTGGTAGGAGTGG+TGG - chr7_4:41733000-41733019 Msa1154320:CDS 60.0%
! GGTAGTGGTAGGAGTGGTGG+AGG - chr7_4:41733003-41733022 Msa1154320:CDS 60.0%
! AGTGGTAGGAGTGGTGGAGG+TGG - chr7_4:41733006-41733025 Msa1154320:CDS 60.0%
!! GCTGCTGTTGGGTTTGGTGC+TGG - chr7_4:41733453-41733472 Msa1154320:CDS 60.0%
!! GGGTTTGGTGCTGGTCTTGC+TGG - chr7_4:41733462-41733481 Msa1154320:CDS 60.0%
CGCTCTCTCACACCAGATCC+AGG - chr7_4:41732428-41732447 Msa1154320:three_prime_UTR 60.0%
CAACGCCGTCATGTATGCGG+CGG - chr7_4:41732553-41732572 Msa1154320:three_prime_UTR 60.0%
!! GGTGGTAGTGGTAGGAGTGG+TGG - chr7_4:41733000-41733019 Msa1154320:CDS 60.0%
! GGTAGTGGTAGGAGTGGTGG+AGG - chr7_4:41733003-41733022 Msa1154320:CDS 60.0%
! AGTGGTAGGAGTGGTGGAGG+TGG - chr7_4:41733006-41733025 Msa1154320:CDS 60.0%
!! GCTGCTGTTGGGTTTGGTGC+TGG - chr7_4:41733453-41733472 Msa1154320:CDS 60.0%
!! GGGTTTGGTGCTGGTCTTGC+TGG - chr7_4:41733462-41733481 Msa1154320:CDS 60.0%
!! CGGCGCCGGTACGTGAATCA+CGG - chr7_4:41732573-41732592 Msa1154320:three_prime_UTR 65.0%
! GGTAGGAGTGGTGGAGGTGG+TGG - chr7_4:41733009-41733028 Msa1154320:CDS 65.0%
! AGGAGTGGTGGAGGTGGTGG+TGG - chr7_4:41733012-41733031 Msa1154320:CDS 65.0%
!! AGTGGTGGAGGTGGTGGTGG+TGG - chr7_4:41733015-41733034 Msa1154320:CDS 65.0%
!! CGGCGCCGGTACGTGAATCA+CGG - chr7_4:41732573-41732592 Msa1154320:three_prime_UTR 65.0%
! GGTAGGAGTGGTGGAGGTGG+TGG - chr7_4:41733009-41733028 Msa1154320:CDS 65.0%
! AGGAGTGGTGGAGGTGGTGG+TGG - chr7_4:41733012-41733031 Msa1154320:CDS 65.0%
!! AGTGGTGGAGGTGGTGGTGG+TGG - chr7_4:41733015-41733034 Msa1154320:CDS 65.0%
CGGCGCCGCCGCATACATGA+CGG + chr7_4:41732561-41732580 None:intergenic 70.0%
CGTCATGTATGCGGCGGCGC+CGG - chr7_4:41732559-41732578 Msa1154320:three_prime_UTR 70.0%
CGGCGCCGCCGCATACATGA+CGG + chr7_4:41732561-41732580 None:intergenic 70.0%
CGTCATGTATGCGGCGGCGC+CGG - chr7_4:41732559-41732578 Msa1154320:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 41732301 41734334 41732301 ID=Msa1154320;Name=Msa1154320
chr7_4 mRNA 41732301 41734334 41732301 ID=Msa1154320-mRNA-1;Parent=Msa1154320;Name=Msa1154320-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0|0.5|0.5|0|0.5|2|459|357
chr7_4 exon 41732301 41733829 41732301 ID=Msa1154320-mRNA-1:exon:10203;Parent=Msa1154320-mRNA-1
chr7_4 exon 41734331 41734334 41734331 ID=Msa1154320-mRNA-1:exon:10202;Parent=Msa1154320-mRNA-1
chr7_4 CDS 41734331 41734334 41734331 ID=Msa1154320-mRNA-1:cds;Parent=Msa1154320-mRNA-1
chr7_4 CDS 41732760 41733829 41732760 ID=Msa1154320-mRNA-1:cds;Parent=Msa1154320-mRNA-1
chr7_4 three_prime_UTR 41732301 41732759 41732301 ID=Msa1154320-mRNA-1:three_prime_utr;Parent=Msa1154320-mRNA-1
Gene Sequence

>Msa1154320

ATGAATCAAATGTCAACTATGACTCTTCTGCGTTTTACACCTTCATCTGGTCAAAGCCGTGCACTTTCATTTCCATCATCATTACCATCACCACCTCCACAGTTAAATAACCGTACTTCTATATATCTCACCAACCCATCACCCCATTTGCCTCAAAGGTTGAAAATTTCATTCGTCGGAGGTGATGGTGTTGGAAGTGGTGGTAGTGGTAGGAGTGGTGGAGGTGGTGGTGGTGGAAGTGAAAATTGGGGTGGTGCTAATAATGATAATGATGATGGAAAATCAAAAGATTCGTCTTTTGGGATTTTGGGTCTGTTTCTGAATGGATGGAGATCAAGGGTTGCTGCTGATCCACAGTTTCCTTTCAAGGTTTTGATGGAAGAGTTGGTTGGTGTTACTGCTTGTGTCTTAGGTGATATGGCTTCAAGGCCTAATTTTGGTTTGAATGAACTTGATTTTGTGTTTTCAACTCTTGTTGTTGGTGCTATTCTCAATTTCACACTTATGTATCTATTGGCACCAACATTAGGAGCTTCTTCTGCTAGTGTGCCTGCAATCTTTGCATCTTGTCCTAAGAGTCACATGTTTGAGCCTGGTGCTTTTAGTTTATTGGATAGGTTAGGTACTTTGGTGTATAAAGGTACCATTTTTGCTGCTGTTGGGTTTGGTGCTGGTCTTGCTGGTACAGCACTTTCAAATGGGTTGATTAAGATGAGGAAGAAAATGGATCCAAACTTTGAGACACCAAACAAAGCTCCACCTACTTTACTCAATTCTCTCACTTGGGCTGCTCATATGGGTTTCAGCAGTAATCTTAGGTACCAAACACTAAATGGTGCTGAGTTTGTGTTGGAGAAAGCGCTTAATCCTTTAGCATTCAAGTCCTCGGTGTTGGTGCTTAGGGTTGTGAACAATGTTCTTGGAGGAATGTCTTTTGTGGTTTTGGCAAGGTTGACAGGGTCACAGAGTTCTGGTGAGAAGCCATCACAATTGGAGGATGGATTAGTTGAGAAGGTTGAAAGGGAAAGGGAGGAGGCTTTGGAGAATAACAACCAAACAACATCAACAAAGTGA

Protein sequence

>Msa1154320

MNQMSTMTLLRFTPSSGQSRALSFPSSLPSPPPQLNNRTSIYLTNPSPHLPQRLKISFVGGDGVGSGGSGRSGGGGGGGSENWGGANNDNDDGKSKDSSFGILGLFLNGWRSRVAADPQFPFKVLMEELVGVTACVLGDMASRPNFGLNELDFVFSTLVVGAILNFTLMYLLAPTLGASSASVPAIFASCPKSHMFEPGAFSLLDRLGTLVYKGTIFAAVGFGAGLAGTALSNGLIKMRKKMDPNFETPNKAPPTLLNSLTWAAHMGFSSNLRYQTLNGAEFVLEKALNPLAFKSSVLVLRVVNNVLGGMSFVVLARLTGSQSSGEKPSQLEDGLVEKVEREREEALENNNQTTSTK*