Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384300 | XP_013462110.1 | 95.640 | 734 | 31 | 1 | 1 | 734 | 1 | 733 | 0.0 | 1238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384300 | A0A072VD92 | 95.640 | 734 | 31 | 1 | 1 | 734 | 1 | 733 | 0.0 | 1238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384300 | Msa0478680 | 0.944436 | 1.956116e-103 | -8.615850e-47 |
| Msa0384300 | Msa0522760 | 0.888532 | 5.433376e-73 | -8.615850e-47 |
| Msa0384300 | Msa0791730 | 0.943489 | 1.098263e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384300 | MtrunA17_Chr3g0141461 | 95.640 | 734 | 31 | 1 | 1 | 734 | 1 | 733 | 0.0 | 1238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0384300 | AT1G75150.2 | 34.895 | 811 | 392 | 30 | 12 | 734 | 14 | 776 | 6.55e-68 | 239 |
| Msa0384300 | AT1G75150.1 | 34.944 | 807 | 389 | 30 | 12 | 730 | 14 | 772 | 1.79e-67 | 238 |
| Msa0384300 | AT1G75150.3 | 34.969 | 815 | 378 | 29 | 12 | 730 | 14 | 772 | 1.84e-67 | 238 |
Find 163 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGAGTGGATTATTTATT+AGG | 0.102842 | 3_1:+87343798 | Msa0384300:three_prime_UTR |
| TTGAACCGCAATTAAGTTTC+TGG | 0.119108 | 3_1:-87341992 | None:intergenic |
| CCACCCAAGCTTTCAATTTC+AGG | 0.163653 | 3_1:-87339726 | None:intergenic |
| GTCCGATCATCATATATATT+TGG | 0.169505 | 3_1:+87342972 | Msa0384300:CDS |
| CTGTGTATTTCTTTGGAATT+TGG | 0.196893 | 3_1:-87343425 | None:intergenic |
| ATTTGTTCTGTGTATTTCTT+TGG | 0.223685 | 3_1:-87343432 | None:intergenic |
| CGGTTGTATCTCAGATTATA+AGG | 0.256841 | 3_1:+87343374 | Msa0384300:intron |
| TCTGAATCCGAACAGAATTC+TGG | 0.266048 | 3_1:+87339675 | Msa0384300:CDS |
| TGCTAGTCTTTCCGTGCGTT+TGG | 0.280883 | 3_1:+87343701 | Msa0384300:three_prime_UTR |
| AAAGAGTGGATTATTTATTA+GGG | 0.285163 | 3_1:+87343799 | Msa0384300:three_prime_UTR |
| GATTCTTCTATTGTCTTCTC+TGG | 0.285609 | 3_1:-87339843 | None:intergenic |
| CTCTTATAAGCAGAAATCTT+TGG | 0.297379 | 3_1:-87343667 | None:intergenic |
| CATCACCTTCTTCATTATCT+TGG | 0.303254 | 3_1:-87341833 | None:intergenic |
| TTTGGGTGCGAAGAGGGTTT+TGG | 0.306380 | 3_1:+87339782 | Msa0384300:CDS |
| GTTCCTGATACCAAGATAAA+AGG | 0.307705 | 3_1:+87342489 | Msa0384300:CDS |
| CATTATCTTGGAAGCGTTGT+AGG | 0.308701 | 3_1:-87341821 | None:intergenic |
| TTGATGATTTAGTTATGTTT+TGG | 0.309038 | 3_1:-87342664 | None:intergenic |
| GAGAAGACAATAGAAGAATC+TGG | 0.335300 | 3_1:+87339846 | Msa0384300:CDS |
| CACAGTCGAGGAAAACGATT+TGG | 0.339867 | 3_1:+87339764 | Msa0384300:CDS |
| AAGTTCATTGAAAGCATAGA+TGG | 0.344830 | 3_1:-87341263 | None:intergenic |
| AGCTGGTGTTTCTTCGGATT+CGG | 0.359251 | 3_1:-87340573 | None:intergenic |
| GATGATCCCGCAGATGTTTA+CGG | 0.359304 | 3_1:+87342151 | Msa0384300:CDS |
| TCCGATCATCATATATATTT+GGG | 0.359571 | 3_1:+87342973 | Msa0384300:CDS |
| CTTAAGCTTTCGTTCGATGA+TGG | 0.368541 | 3_1:-87339589 | None:intergenic |
| GAAGCCGATTTCGTCTATAC+TGG | 0.369525 | 3_1:+87340318 | Msa0384300:CDS |
| TTAACCTTATCGAATTGAAA+TGG | 0.371697 | 3_1:-87339475 | None:intergenic |
| CGAATGATTTGCAGCATTGT+TGG | 0.374760 | 3_1:-87340642 | None:intergenic |
| GTCACTGTCATCTTCCTCTT+CGG | 0.375822 | 3_1:-87341793 | None:intergenic |
| GCTAGTCTTTCCGTGCGTTT+GGG | 0.379200 | 3_1:+87343702 | Msa0384300:three_prime_UTR |
| TTGACAGGGTCACCGCTTGC+AGG | 0.380630 | 3_1:-87341750 | None:intergenic |
| CACCCAAGCTTTCAATTTCA+GGG | 0.391601 | 3_1:-87339725 | None:intergenic |
| TTAAGCACACCGCATATTGA+TGG | 0.391706 | 3_1:+87340617 | Msa0384300:CDS |
| TCGGATTCAGAGAATTTGAT+TGG | 0.402079 | 3_1:-87339663 | None:intergenic |
| TCTATAAGAGAGGGACTGTT+TGG | 0.404011 | 3_1:-87342225 | None:intergenic |
| CTTGAGCAGCAGGATACAAC+TGG | 0.406510 | 3_1:+87341954 | Msa0384300:CDS |
| GGCTTCTGAACCAGAGGAAC+AGG | 0.406665 | 3_1:-87340301 | None:intergenic |
| GCATGTAGCTGGTGTTTCTT+CGG | 0.408069 | 3_1:-87340579 | None:intergenic |
| CGGATTCAGAGAATTTGATT+GGG | 0.410649 | 3_1:-87339662 | None:intergenic |
| CTTAATGATATGATAGCAAC+TGG | 0.412906 | 3_1:+87341876 | Msa0384300:CDS |
| GAAGAAGTTTCAGAGAAGAA+AGG | 0.421975 | 3_1:+87339933 | Msa0384300:CDS |
| TGCGTTTAAACCTGTTCCTC+TGG | 0.431252 | 3_1:+87340291 | Msa0384300:CDS |
| CGATCCATTTCAATTCGATA+AGG | 0.434556 | 3_1:+87339471 | Msa0384300:five_prime_UTR |
| TCAGCAATGGCTTGAGCAGC+AGG | 0.435184 | 3_1:+87341944 | Msa0384300:CDS |
| AAGAAGTTTCAGAGAAGAAA+GGG | 0.443719 | 3_1:+87339934 | Msa0384300:CDS |
| TTGTTGGCCAGTTCCCTTTG+TGG | 0.444676 | 3_1:+87343727 | Msa0384300:three_prime_UTR |
| TCTGGCTTGGAGGAGTCAAT+TGG | 0.447780 | 3_1:+87339693 | Msa0384300:CDS |
| TTAAGCTTTCGTTCGATGAT+GGG | 0.448047 | 3_1:-87339588 | None:intergenic |
| CTTATTCAACTTCCCATTGA+GGG | 0.450679 | 3_1:-87341219 | None:intergenic |
| TGTCCCTGAAATTGAAAGCT+TGG | 0.451837 | 3_1:+87339722 | Msa0384300:CDS |
| GAATTTGGCAGAAACAACTT+TGG | 0.454646 | 3_1:-87343410 | None:intergenic |
| TTCTCTGCAGGGCATGTAGC+TGG | 0.454937 | 3_1:-87340590 | None:intergenic |
| TTATCCAGTATAGACGAAAT+CGG | 0.455844 | 3_1:-87340322 | None:intergenic |
| ACAACGCTTTGTATGATTTG+AGG | 0.457574 | 3_1:-87343518 | None:intergenic |
| GTGCTTAAATCATTCTCTGC+AGG | 0.458300 | 3_1:-87340602 | None:intergenic |
| ATTGGGGACGAAGAGGGGAG+AGG | 0.460416 | 3_1:-87339645 | None:intergenic |
| CTGGTATCCACAAAGGGAAC+TGG | 0.464311 | 3_1:-87343734 | None:intergenic |
| TCATCGACAAAAGCCTTGAC+AGG | 0.469980 | 3_1:-87341765 | None:intergenic |
| CGGCTGAAGATGAAAGCAGC+AGG | 0.472410 | 3_1:+87342433 | Msa0384300:CDS |
| TGAAAACATTCCTTCTCCTA+TGG | 0.473423 | 3_1:+87340670 | Msa0384300:CDS |
| AATTTGGCAGAAACAACTTT+GGG | 0.476283 | 3_1:-87343409 | None:intergenic |
| CTGCTGCTTTCATCTTCAGC+CGG | 0.477500 | 3_1:-87342432 | None:intergenic |
| ACTTACACATCATCATCAAC+AGG | 0.478005 | 3_1:-87341302 | None:intergenic |
| AATGTGTGGCATATCAAATA+TGG | 0.478119 | 3_1:-87342639 | None:intergenic |
| TATTGTCTTCTCTGGAACCC+TGG | 0.480622 | 3_1:-87339835 | None:intergenic |
| GCTGCTCAAGCCATTGCTGA+TGG | 0.482598 | 3_1:-87341941 | None:intergenic |
| AATACCTGGGTATCATCAAC+AGG | 0.482930 | 3_1:-87341074 | None:intergenic |
| AGAAGACAATAGAAGAATCT+GGG | 0.485094 | 3_1:+87339847 | Msa0384300:CDS |
| ATTAAAGAAGAGGCCCTCAA+TGG | 0.488027 | 3_1:+87341206 | Msa0384300:CDS |
| CTCCAAGCCAGAATTCTGTT+CGG | 0.488135 | 3_1:-87339682 | None:intergenic |
| GTCCCTGAAATTGAAAGCTT+GGG | 0.492026 | 3_1:+87339723 | Msa0384300:CDS |
| CGTTCGATGATGGGAGAAGA+AGG | 0.495851 | 3_1:-87339579 | None:intergenic |
| AATTTGATTGGGGACGAAGA+GGG | 0.495924 | 3_1:-87339651 | None:intergenic |
| AGATGGGGCAAACACTTCTT+CGG | 0.497175 | 3_1:-87341246 | None:intergenic |
| AAAGCTTAAGCGTTTGAAGA+AGG | 0.498790 | 3_1:+87339602 | Msa0384300:CDS |
| ATTTGATTGGGGACGAAGAG+GGG | 0.499284 | 3_1:-87339650 | None:intergenic |
| ACGAAGAAGTCAATTAAGAC+AGG | 0.499928 | 3_1:+87343595 | Msa0384300:CDS |
| CAATAAAAGAAAAGCCGAAA+AGG | 0.503415 | 3_1:+87340034 | Msa0384300:CDS |
| ATGCCTTCTTCTCAAAAGCA+TGG | 0.508089 | 3_1:+87342939 | Msa0384300:CDS |
| ACAGTCGAGGAAAACGATTT+GGG | 0.508680 | 3_1:+87339765 | Msa0384300:CDS |
| TTAAAGAAGAGGCCCTCAAT+GGG | 0.508936 | 3_1:+87341207 | Msa0384300:CDS |
| GCGTTTGAAGAAGGCATCTA+GGG | 0.510976 | 3_1:+87339611 | Msa0384300:CDS |
| CTTGTCATTGTCCTCGTCAT+CGG | 0.511285 | 3_1:-87341682 | None:intergenic |
| TTATTGTTGCTGCATTACTC+TGG | 0.511413 | 3_1:-87343753 | None:intergenic |
| TAGTTATCTCTTCACTAGGA+TGG | 0.511460 | 3_1:-87340535 | None:intergenic |
| GAAATCATCGTCGCTATCCA+TGG | 0.514126 | 3_1:-87339547 | None:intergenic |
| CGAACAGAATTCTGGCTTGG+AGG | 0.514744 | 3_1:+87339683 | Msa0384300:CDS |
| ATCCGAACAGAATTCTGGCT+TGG | 0.521666 | 3_1:+87339680 | Msa0384300:CDS |
| CTTTATCCGTAAACATCTGC+GGG | 0.523224 | 3_1:-87342157 | None:intergenic |
| GGCTTGGAGGAGTCAATTGG+AGG | 0.523443 | 3_1:+87339696 | Msa0384300:CDS |
| AAACGATTTGGGTGCGAAGA+GGG | 0.525559 | 3_1:+87339776 | Msa0384300:CDS |
| TTGAGATTTAGAAGTTGAAG+TGG | 0.527991 | 3_1:-87343458 | None:intergenic |
| TCTGAAACTTCTTCTACACT+AGG | 0.528815 | 3_1:-87339903 | None:intergenic |
| ATCTGACGATGAAGTTGAAG+AGG | 0.529423 | 3_1:+87342025 | Msa0384300:CDS |
| CGCTTCCAAGATAATGAAGA+AGG | 0.530519 | 3_1:+87341828 | Msa0384300:CDS |
| GTCAGAGGATTCTTCAGATA+CGG | 0.530551 | 3_1:+87343031 | Msa0384300:CDS |
| AGAGTCAAATGTATCACTGA+TGG | 0.535371 | 3_1:+87343480 | Msa0384300:CDS |
| TTATTAGTTATCTCTTCACT+AGG | 0.535949 | 3_1:-87340539 | None:intergenic |
| GCTTATTCAACTTCCCATTG+AGG | 0.539326 | 3_1:-87341220 | None:intergenic |
| GGTTGTATCTCAGATTATAA+GGG | 0.541946 | 3_1:+87343375 | Msa0384300:intron |
| TGGACGATGAACTTGACGCC+AGG | 0.542343 | 3_1:+87339817 | Msa0384300:CDS |
| AGCGTTTGAAGAAGGCATCT+AGG | 0.544573 | 3_1:+87339610 | Msa0384300:CDS |
| AAGCGTTGTGTCAAGAATGC+CGG | 0.549269 | 3_1:+87343532 | Msa0384300:CDS |
| AATAAATGATATTAAAGAAG+AGG | 0.553156 | 3_1:+87341196 | Msa0384300:CDS |
| TCCCAAATATATATGATGAT+CGG | 0.554179 | 3_1:-87342974 | None:intergenic |
| TACTGGATAAAATTCGAAAG+AGG | 0.561886 | 3_1:+87340335 | Msa0384300:CDS |
| TTGATCTTCACAGCATCAGA+TGG | 0.562695 | 3_1:-87342110 | None:intergenic |
| CACTGATGGAGATATTAAGC+AGG | 0.563186 | 3_1:+87343494 | Msa0384300:CDS |
| AGTTCATTGAAAGCATAGAT+GGG | 0.567377 | 3_1:-87341262 | None:intergenic |
| CGAAGAAGTCAATTAAGACA+GGG | 0.568898 | 3_1:+87343596 | Msa0384300:CDS |
| ATTACTCTGGTATCCACAAA+GGG | 0.570256 | 3_1:-87343740 | None:intergenic |
| TTCCAGGTCTTCCGATGACG+AGG | 0.572092 | 3_1:+87341671 | Msa0384300:intron |
| GCCAACAAAACCCAAACGCA+CGG | 0.575823 | 3_1:-87343712 | None:intergenic |
| ATCTCTTCACTAGGATGGCG+AGG | 0.576933 | 3_1:-87340530 | None:intergenic |
| CAAGCCATTGCTGATGGAGT+TGG | 0.580859 | 3_1:-87341935 | None:intergenic |
| AACACAGTGCCACACTCACA+TGG | 0.587089 | 3_1:+87341708 | Msa0384300:CDS |
| TGATGTATGATGTGAAATGA+TGG | 0.587888 | 3_1:+87343628 | Msa0384300:exon |
| AAACATAACTAAATCATCAA+AGG | 0.587995 | 3_1:+87342667 | Msa0384300:CDS |
| TGCAAGCGGTGACCCTGTCA+AGG | 0.589300 | 3_1:+87341752 | Msa0384300:CDS |
| TCCTCTGACATCAACACTGA+AGG | 0.589871 | 3_1:-87343017 | None:intergenic |
| TGCTTAAATCATTCTCTGCA+GGG | 0.590079 | 3_1:-87340601 | None:intergenic |
| AACTCACAACTCTATAAGAG+AGG | 0.593686 | 3_1:-87342235 | None:intergenic |
| CATTACTCTGGTATCCACAA+AGG | 0.594086 | 3_1:-87343741 | None:intergenic |
| GACTTGTCTTTACCTGCAAG+CGG | 0.597345 | 3_1:+87341738 | Msa0384300:CDS |
| TGTGAAGATCAATCTGAAGA+AGG | 0.597643 | 3_1:+87342121 | Msa0384300:CDS |
| TGTCGATGAAGAAGCCGAAG+AGG | 0.600579 | 3_1:+87341779 | Msa0384300:CDS |
| ATATTTGATATGCCACACAT+TGG | 0.602377 | 3_1:+87342641 | Msa0384300:CDS |
| TATTGACTAACCATAGGAGA+AGG | 0.604545 | 3_1:-87340680 | None:intergenic |
| ACCTTCAGTGTTGATGTCAG+AGG | 0.605071 | 3_1:+87343016 | Msa0384300:CDS |
| GCAGCAGGATACAACTGGGA+TGG | 0.605675 | 3_1:+87341959 | Msa0384300:CDS |
| GAATTTGATTGGGGACGAAG+AGG | 0.606741 | 3_1:-87339652 | None:intergenic |
| GGATTCAGAGAATTTGATTG+GGG | 0.608596 | 3_1:-87339661 | None:intergenic |
| GATGATGGGAGAAGAAGGTA+AGG | 0.611648 | 3_1:-87339574 | None:intergenic |
| AGCTCCTGTTGATGATACCC+AGG | 0.611990 | 3_1:+87341070 | Msa0384300:CDS |
| AAGAGCAGTGACGACAGTAA+CGG | 0.614383 | 3_1:+87339981 | Msa0384300:CDS |
| GGACGATGAACTTGACGCCA+GGG | 0.623312 | 3_1:+87339818 | Msa0384300:CDS |
| TCAAAAGCATGGATCAAGCA+AGG | 0.624049 | 3_1:+87342950 | Msa0384300:CDS |
| GAAGACAATAGAAGAATCTG+GGG | 0.628399 | 3_1:+87339848 | Msa0384300:CDS |
| AAAACGATTTGGGTGCGAAG+AGG | 0.629285 | 3_1:+87339775 | Msa0384300:CDS |
| ACTCACAACTCTATAAGAGA+GGG | 0.630084 | 3_1:-87342234 | None:intergenic |
| GCGAAGAAGTCTCTGAGACT+CGG | 0.630403 | 3_1:-87340168 | None:intergenic |
| TCTTTATCCGTAAACATCTG+CGG | 0.632377 | 3_1:-87342158 | None:intergenic |
| GGCTGAAGATGAAAGCAGCA+GGG | 0.633689 | 3_1:+87342434 | Msa0384300:CDS |
| CGATGACGAGGACAATGACA+AGG | 0.636882 | 3_1:+87341683 | Msa0384300:CDS |
| GTGACCAACTCCATCAGCAA+TGG | 0.642435 | 3_1:+87341931 | Msa0384300:CDS |
| GAGTCTCAGAGACTTCTTCG+CGG | 0.647421 | 3_1:+87340170 | Msa0384300:CDS |
| CCTGAAATTGAAAGCTTGGG+TGG | 0.651371 | 3_1:+87339726 | Msa0384300:CDS |
| ATCATCTGATGAGGAAACTG+AGG | 0.653080 | 3_1:+87342193 | Msa0384300:CDS |
| CTACTCCAGAAACTTAATTG+CGG | 0.654037 | 3_1:+87341987 | Msa0384300:CDS |
| CATCGACAAAAGCCTTGACA+GGG | 0.655621 | 3_1:-87341764 | None:intergenic |
| GCTGAAGATGAAAGCAGCAG+GGG | 0.663173 | 3_1:+87342435 | Msa0384300:CDS |
| AAATGTTACTGACACAGTCG+AGG | 0.668281 | 3_1:+87339752 | Msa0384300:CDS |
| CTGATGAGGAAACTGAGGAG+AGG | 0.669168 | 3_1:+87342198 | Msa0384300:CDS |
| TCAGCTGATCCATGTGAGTG+TGG | 0.671330 | 3_1:-87341717 | None:intergenic |
| GTTCATTGAAAGCATAGATG+GGG | 0.673358 | 3_1:-87341261 | None:intergenic |
| GAAATCGGCTTCTGAACCAG+AGG | 0.680025 | 3_1:-87340307 | None:intergenic |
| TTGAGCAGCAGGATACAACT+GGG | 0.682128 | 3_1:+87341955 | Msa0384300:CDS |
| TCAGATCTCAGAATCAACCA+TGG | 0.682198 | 3_1:+87339530 | Msa0384300:exon |
| TGCATATGTATCATCTGATG+AGG | 0.684397 | 3_1:+87342184 | Msa0384300:CDS |
| GAAGAAGTCAATTAAGACAG+GGG | 0.696735 | 3_1:+87343597 | Msa0384300:CDS |
| TGAAGTTGAAGAGGAAGACG+AGG | 0.701412 | 3_1:+87342034 | Msa0384300:CDS |
| GCTCAGAATCAATATCCACA+TGG | 0.713481 | 3_1:-87340508 | None:intergenic |
| TGACAATGATGGTTTCCATG+TGG | 0.713917 | 3_1:+87340493 | Msa0384300:CDS |
| TTGTTGGAACCATCAATATG+CGG | 0.716098 | 3_1:-87340626 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGTTAAATAAAATTGT+AGG | + | chr3_1:87342754-87342773 | Msa0384300:intron | 10.0% |
| !!! | ATTTGTTAAATAAAATTGTA+GGG | + | chr3_1:87342755-87342774 | Msa0384300:intron | 10.0% |
| !! | ATTTAAATAGCATTTAAAAA+AGG | - | chr3_1:87343294-87343313 | None:intergenic | 10.0% |
| !! | ATTGTATAAAAATAATTCAC+TGG | - | chr3_1:87340074-87340093 | None:intergenic | 15.0% |
| !!! | TTTGTGTTAGTTTATTAAAT+GGG | + | chr3_1:87340954-87340973 | Msa0384300:intron | 15.0% |
| !! | AATAAATGATATTAAAGAAG+AGG | + | chr3_1:87341196-87341215 | Msa0384300:CDS | 15.0% |
| !! | TAAAATTAATAGATCTTACA+TGG | - | chr3_1:87342522-87342541 | None:intergenic | 15.0% |
| !!! | TTTTATTTAACAAATTTGCT+GGG | - | chr3_1:87342750-87342769 | None:intergenic | 15.0% |
| !!! | ATTTTATTTAACAAATTTGC+TGG | - | chr3_1:87342751-87342770 | None:intergenic | 15.0% |
| !! | TTTGTTAAATAAAATTGTAG+GGG | + | chr3_1:87342756-87342775 | Msa0384300:intron | 15.0% |
| !!! | TGTAGATTCATTGATTTTAT+AGG | + | chr3_1:87340115-87340134 | Msa0384300:intron | 20.0% |
| !!! | AGAATTTTTAAAGAAGTAAG+TGG | + | chr3_1:87340363-87340382 | Msa0384300:intron | 20.0% |
| !! | TTACTTTAGATAAACACTAA+TGG | + | chr3_1:87340432-87340451 | Msa0384300:intron | 20.0% |
| !!! | ATTGATTTTGAATATCTAAC+TGG | + | chr3_1:87340773-87340792 | Msa0384300:intron | 20.0% |
| !!! | TTGATTTTGAATATCTAACT+GGG | + | chr3_1:87340774-87340793 | Msa0384300:intron | 20.0% |
| !! | ATTCTATACTTTGTAACTTA+TGG | - | chr3_1:87340900-87340919 | None:intergenic | 20.0% |
| !!! | CTTTGTGTTAGTTTATTAAA+TGG | + | chr3_1:87340953-87340972 | Msa0384300:intron | 20.0% |
| !!! | TTTATTTGTCTTTGATTTCT+AGG | + | chr3_1:87341154-87341173 | Msa0384300:intron | 20.0% |
| !! | ATAAACTATAATCCTTACTT+TGG | + | chr3_1:87341438-87341457 | Msa0384300:intron | 20.0% |
| !! | TAAACTATAATCCTTACTTT+GGG | + | chr3_1:87341439-87341458 | Msa0384300:intron | 20.0% |
| !!! | ATTTTTAATTTCCAGAACAA+TGG | - | chr3_1:87341635-87341654 | None:intergenic | 20.0% |
| !!! | ATTTTAGTATTTCACGAAAT+TGG | + | chr3_1:87342536-87342555 | Msa0384300:intron | 20.0% |
| !!! | TTGATGATTTAGTTATGTTT+TGG | - | chr3_1:87342667-87342686 | None:intergenic | 20.0% |
| !! | AAACATAACTAAATCATCAA+AGG | + | chr3_1:87342667-87342686 | Msa0384300:CDS | 20.0% |
| !! | TTGTTAAATAAAATTGTAGG+GGG | + | chr3_1:87342757-87342776 | Msa0384300:intron | 20.0% |
| !!! | ATATTTCAGTCATCTTTTAT+CGG | + | chr3_1:87342897-87342916 | Msa0384300:intron | 20.0% |
| !! | TAGCATAATTCATAGAAAAA+TGG | - | chr3_1:87343113-87343132 | None:intergenic | 20.0% |
| !! | ATGCTAAACATAAATTTAGT+TGG | - | chr3_1:87343194-87343213 | None:intergenic | 20.0% |
| !!! | AATTTTCAATACAAAAAGAG+TGG | + | chr3_1:87343785-87343804 | Msa0384300:three_prime_UTR | 20.0% |
| !!! | AAAAGAGTGGATTATTTATT+AGG | + | chr3_1:87343798-87343817 | Msa0384300:three_prime_UTR | 20.0% |
| ! | TTAACCTTATCGAATTGAAA+TGG | - | chr3_1:87339478-87339497 | None:intergenic | 25.0% |
| !!! | TCTTGTTTCTAAACAAAACA+CGG | - | chr3_1:87340266-87340285 | None:intergenic | 25.0% |
| ! | TTATTAGTTATCTCTTCACT+AGG | - | chr3_1:87340542-87340561 | None:intergenic | 25.0% |
| ! | AATTGTATTGTATAACTAGC+TGG | - | chr3_1:87340708-87340727 | None:intergenic | 25.0% |
| ! | GCTAGTTATACAATACAATT+TGG | + | chr3_1:87340708-87340727 | Msa0384300:intron | 25.0% |
| !! | TGATTTTGAATATCTAACTG+GGG | + | chr3_1:87340775-87340794 | Msa0384300:intron | 25.0% |
| ! | AACTAACACAAAGATTTCAA+GGG | - | chr3_1:87340946-87340965 | None:intergenic | 25.0% |
| ! | AAACTAACACAAAGATTTCA+AGG | - | chr3_1:87340947-87340966 | None:intergenic | 25.0% |
| !!! | AAGAAAGCATCTGAATAAAT+GGG | - | chr3_1:87341106-87341125 | None:intergenic | 25.0% |
| !!! | TAAGAAAGCATCTGAATAAA+TGG | - | chr3_1:87341107-87341126 | None:intergenic | 25.0% |
| ! | ACTAAATCTGAAGATAACAA+AGG | - | chr3_1:87341343-87341362 | None:intergenic | 25.0% |
| ! | ATAGACAATGAAACTTTATG+TGG | - | chr3_1:87341380-87341399 | None:intergenic | 25.0% |
| ! | TAGCTATATGGTTGTTAATT+TGG | + | chr3_1:87341469-87341488 | Msa0384300:intron | 25.0% |
| !!! | GTTAATTTGGATTTTTACGT+TGG | + | chr3_1:87341482-87341501 | Msa0384300:intron | 25.0% |
| !! | ATTTTTACGTTGGAAAATTC+TGG | + | chr3_1:87341492-87341511 | Msa0384300:intron | 25.0% |
| ! | TATGATGAGAAAGTAAATGA+TGG | + | chr3_1:87341521-87341540 | Msa0384300:intron | 25.0% |
| ! | GTTAAAGGAAAAAGATAAAC+AGG | - | chr3_1:87341561-87341580 | None:intergenic | 25.0% |
| ! | TACACTATGGAAGAATTAAA+AGG | - | chr3_1:87341593-87341612 | None:intergenic | 25.0% |
| !!! | TTTTAATTCTTCCATAGTGT+AGG | + | chr3_1:87341592-87341611 | Msa0384300:intron | 25.0% |
| ! | TCAAAATTGTAATGTGTAAC+AGG | + | chr3_1:87342386-87342405 | Msa0384300:intron | 25.0% |
| ! | ATAACTAAATCATCAAAGGT+AGG | + | chr3_1:87342671-87342690 | Msa0384300:intron | 25.0% |
| ! | TCCGATCATCATATATATTT+GGG | + | chr3_1:87342973-87342992 | Msa0384300:CDS | 25.0% |
| ! | TCCCAAATATATATGATGAT+CGG | - | chr3_1:87342977-87342996 | None:intergenic | 25.0% |
| ! | TTCATCAGTTGAAATTCATA+TGG | + | chr3_1:87343166-87343185 | Msa0384300:intron | 25.0% |
| ! | AATAGCATTTAAAAAAGGAG+AGG | - | chr3_1:87343289-87343308 | None:intergenic | 25.0% |
| ! | ATTTGTTCTGTGTATTTCTT+TGG | - | chr3_1:87343435-87343454 | None:intergenic | 25.0% |
| !!! | ACTTTTTGGTTTTTGGAAAC+AGG | - | chr3_1:87339505-87339524 | None:intergenic | 30.0% |
| AGAAGACAATAGAAGAATCT+GGG | + | chr3_1:87339847-87339866 | Msa0384300:CDS | 30.0% | |
| AAGAAGTTTCAGAGAAGAAA+GGG | + | chr3_1:87339913-87339932 | Msa0384300:CDS | 30.0% | |
| ! | CTTTTCGGCTTTTCTTTTAT+TGG | - | chr3_1:87340036-87340055 | None:intergenic | 30.0% |
| CAATAAAAGAAAAGCCGAAA+AGG | + | chr3_1:87340034-87340053 | Msa0384300:CDS | 30.0% | |
| ! | AAAACGCATACAAACCTTTT+CGG | - | chr3_1:87340051-87340070 | None:intergenic | 30.0% |
| !!! | TTCGCGGTATTGATTTTTTT+TGG | + | chr3_1:87340186-87340205 | Msa0384300:intron | 30.0% |
| CGGTAAACTAACTGAATAAT+TGG | - | chr3_1:87340246-87340265 | None:intergenic | 30.0% | |
| TTATCCAGTATAGACGAAAT+CGG | - | chr3_1:87340325-87340344 | None:intergenic | 30.0% | |
| TACTGGATAAAATTCGAAAG+AGG | + | chr3_1:87340335-87340354 | Msa0384300:CDS | 30.0% | |
| ! | ATAAACACTAATGGATACCT+GGG | + | chr3_1:87340441-87340460 | Msa0384300:intron | 30.0% |
| ! | GTTTCTTTTCATGACAATGA+TGG | + | chr3_1:87340482-87340501 | Msa0384300:CDS | 30.0% |
| GTTTATTAAATGGGAGATGT+TGG | + | chr3_1:87340963-87340982 | Msa0384300:intron | 30.0% | |
| ! | TCAAAGACAAATAAAGCACT+TGG | - | chr3_1:87341149-87341168 | None:intergenic | 30.0% |
| ! | AGTTCATTGAAAGCATAGAT+GGG | - | chr3_1:87341265-87341284 | None:intergenic | 30.0% |
| ! | AAGTTCATTGAAAGCATAGA+TGG | - | chr3_1:87341266-87341285 | None:intergenic | 30.0% |
| !! | AAAAGGTCAAGGTTTGTTAA+AGG | - | chr3_1:87341576-87341595 | None:intergenic | 30.0% |
| ATGGAAGAATTAAAAGGTCA+AGG | - | chr3_1:87341587-87341606 | None:intergenic | 30.0% | |
| CTTAATGATATGATAGCAAC+TGG | + | chr3_1:87341876-87341895 | Msa0384300:CDS | 30.0% | |
| !!! | TATTGCTGTCACTTTGATTT+TGG | + | chr3_1:87342285-87342304 | Msa0384300:intron | 30.0% |
| AATGTGTGGCATATCAAATA+TGG | - | chr3_1:87342642-87342661 | None:intergenic | 30.0% | |
| ATATTTGATATGCCACACAT+TGG | + | chr3_1:87342641-87342660 | Msa0384300:CDS | 30.0% | |
| !! | TAACAAATTTGCTGGGATAA+AGG | - | chr3_1:87342743-87342762 | None:intergenic | 30.0% |
| ! | TGCTGATAAAAACAGTTTTG+TGG | - | chr3_1:87342829-87342848 | None:intergenic | 30.0% |
| GTCCGATCATCATATATATT+TGG | + | chr3_1:87342972-87342991 | Msa0384300:CDS | 30.0% | |
| TAATACTACTAGAACTGTGA+TGG | + | chr3_1:87343238-87343257 | Msa0384300:intron | 30.0% | |
| GGTTGTATCTCAGATTATAA+GGG | + | chr3_1:87343375-87343394 | Msa0384300:intron | 30.0% | |
| AATTTGGCAGAAACAACTTT+GGG | - | chr3_1:87343412-87343431 | None:intergenic | 30.0% | |
| !! | CTGTGTATTTCTTTGGAATT+TGG | - | chr3_1:87343428-87343447 | None:intergenic | 30.0% |
| TTGAGATTTAGAAGTTGAAG+TGG | - | chr3_1:87343461-87343480 | None:intergenic | 30.0% | |
| TGATGTATGATGTGAAATGA+TGG | + | chr3_1:87343628-87343647 | Msa0384300:exon | 30.0% | |
| CTCTTATAAGCAGAAATCTT+TGG | - | chr3_1:87343670-87343689 | None:intergenic | 30.0% | |
| CGATCCATTTCAATTCGATA+AGG | + | chr3_1:87339471-87339490 | Msa0384300:five_prime_UTR | 35.0% | |
| !!! | GAACGACACTTTTTGGTTTT+TGG | - | chr3_1:87339512-87339531 | None:intergenic | 35.0% |
| TTAAGCTTTCGTTCGATGAT+GGG | - | chr3_1:87339591-87339610 | None:intergenic | 35.0% | |
| AAAGCTTAAGCGTTTGAAGA+AGG | + | chr3_1:87339602-87339621 | Msa0384300:CDS | 35.0% | |
| GGATTCAGAGAATTTGATTG+GGG | - | chr3_1:87339664-87339683 | None:intergenic | 35.0% | |
| CGGATTCAGAGAATTTGATT+GGG | - | chr3_1:87339665-87339684 | None:intergenic | 35.0% | |
| TCGGATTCAGAGAATTTGAT+TGG | - | chr3_1:87339666-87339685 | None:intergenic | 35.0% | |
| !!! | GGTTTTGGAGTTTGAATCTA+TGG | + | chr3_1:87339797-87339816 | Msa0384300:CDS | 35.0% |
| GATTCTTCTATTGTCTTCTC+TGG | - | chr3_1:87339846-87339865 | None:intergenic | 35.0% | |
| GAGAAGACAATAGAAGAATC+TGG | + | chr3_1:87339846-87339865 | Msa0384300:CDS | 35.0% | |
| GAAGACAATAGAAGAATCTG+GGG | + | chr3_1:87339848-87339867 | Msa0384300:CDS | 35.0% | |
| ! | TCTGAAACTTCTTCTACACT+AGG | - | chr3_1:87339906-87339925 | None:intergenic | 35.0% |
| GAAGAAGTTTCAGAGAAGAA+AGG | + | chr3_1:87339912-87339931 | Msa0384300:CDS | 35.0% | |
| TGTTTCAGCATGCACTTAAT+TGG | + | chr3_1:87340402-87340421 | Msa0384300:intron | 35.0% | |
| GTTTCAGCATGCACTTAATT+GGG | + | chr3_1:87340403-87340422 | Msa0384300:intron | 35.0% | |
| ! | GATAAACACTAATGGATACC+TGG | + | chr3_1:87340440-87340459 | Msa0384300:intron | 35.0% |
| TAGTTATCTCTTCACTAGGA+TGG | - | chr3_1:87340538-87340557 | None:intergenic | 35.0% | |
| TGCTTAAATCATTCTCTGCA+GGG | - | chr3_1:87340604-87340623 | None:intergenic | 35.0% | |
| TTGTTGGAACCATCAATATG+CGG | - | chr3_1:87340629-87340648 | None:intergenic | 35.0% | |
| ! | TAGGAGAAGGAATGTTTTCA+CGG | - | chr3_1:87340670-87340689 | None:intergenic | 35.0% |
| TGAAAACATTCCTTCTCCTA+TGG | + | chr3_1:87340670-87340689 | Msa0384300:CDS | 35.0% | |
| ! | TATTGACTAACCATAGGAGA+AGG | - | chr3_1:87340683-87340702 | None:intergenic | 35.0% |
| ! | CTGGAATATTGACTAACCAT+AGG | - | chr3_1:87340689-87340708 | None:intergenic | 35.0% |
| !! | CTGCTCTCACTATATTTTGA+TGG | + | chr3_1:87340825-87340844 | Msa0384300:intron | 35.0% |
| AAATGGGTGACATAATACCT+GGG | - | chr3_1:87341090-87341109 | None:intergenic | 35.0% | |
| TAAATGGGTGACATAATACC+TGG | - | chr3_1:87341091-87341110 | None:intergenic | 35.0% | |
| CTTATTCAACTTCCCATTGA+GGG | - | chr3_1:87341222-87341241 | None:intergenic | 35.0% | |
| ! | GTTCATTGAAAGCATAGATG+GGG | - | chr3_1:87341264-87341283 | None:intergenic | 35.0% |
| ACTTACACATCATCATCAAC+AGG | - | chr3_1:87341305-87341324 | None:intergenic | 35.0% | |
| ATCAGCAACGATGAAACAAA+TGG | - | chr3_1:87341412-87341431 | None:intergenic | 35.0% | |
| AATTGAAGAGTCCTACACTA+TGG | - | chr3_1:87341606-87341625 | None:intergenic | 35.0% | |
| ! | CAATTTGCTTTCCATTGTTC+TGG | + | chr3_1:87341621-87341640 | Msa0384300:intron | 35.0% |
| CATCACCTTCTTCATTATCT+TGG | - | chr3_1:87341836-87341855 | None:intergenic | 35.0% | |
| ! | TGATGATGATGATGATATCG+AGG | + | chr3_1:87341851-87341870 | Msa0384300:CDS | 35.0% |
| ! | TCACGCTTTTCTCTATCAAT+TGG | - | chr3_1:87341915-87341934 | None:intergenic | 35.0% |
| CTACTCCAGAAACTTAATTG+CGG | + | chr3_1:87341987-87342006 | Msa0384300:CDS | 35.0% | |
| TTGAACCGCAATTAAGTTTC+TGG | - | chr3_1:87341995-87342014 | None:intergenic | 35.0% | |
| TGTGAAGATCAATCTGAAGA+AGG | + | chr3_1:87342121-87342140 | Msa0384300:CDS | 35.0% | |
| TCTTTATCCGTAAACATCTG+CGG | - | chr3_1:87342161-87342180 | None:intergenic | 35.0% | |
| TGCATATGTATCATCTGATG+AGG | + | chr3_1:87342184-87342203 | Msa0384300:CDS | 35.0% | |
| ACTCACAACTCTATAAGAGA+GGG | - | chr3_1:87342237-87342256 | None:intergenic | 35.0% | |
| AACTCACAACTCTATAAGAG+AGG | - | chr3_1:87342238-87342257 | None:intergenic | 35.0% | |
| GTTCCTGATACCAAGATAAA+AGG | + | chr3_1:87342489-87342508 | Msa0384300:CDS | 35.0% | |
| ! | CTTCCTTTTATCTTGGTATC+AGG | - | chr3_1:87342495-87342514 | None:intergenic | 35.0% |
| ! | TGGAGTTCTTCCTTTTATCT+TGG | - | chr3_1:87342502-87342521 | None:intergenic | 35.0% |
| TCATAATCTTGAAGCCTGAT+TGG | - | chr3_1:87342582-87342601 | None:intergenic | 35.0% | |
| CAAGATTATGACCATGCTAA+CGG | + | chr3_1:87342591-87342610 | Msa0384300:intron | 35.0% | |
| GTTTAGCATGCATGATTTAG+TGG | + | chr3_1:87343205-87343224 | Msa0384300:intron | 35.0% | |
| CGGTTGTATCTCAGATTATA+AGG | + | chr3_1:87343374-87343393 | Msa0384300:intron | 35.0% | |
| GAATTTGGCAGAAACAACTT+TGG | - | chr3_1:87343413-87343432 | None:intergenic | 35.0% | |
| AGAGTCAAATGTATCACTGA+TGG | + | chr3_1:87343480-87343499 | Msa0384300:CDS | 35.0% | |
| ACAACGCTTTGTATGATTTG+AGG | - | chr3_1:87343521-87343540 | None:intergenic | 35.0% | |
| ! | AGATTCATTTTGCTGAACTC+CGG | - | chr3_1:87343554-87343573 | None:intergenic | 35.0% |
| ACGAAGAAGTCAATTAAGAC+AGG | + | chr3_1:87343595-87343614 | Msa0384300:CDS | 35.0% | |
| CGAAGAAGTCAATTAAGACA+GGG | + | chr3_1:87343596-87343615 | Msa0384300:CDS | 35.0% | |
| GAAGAAGTCAATTAAGACAG+GGG | + | chr3_1:87343597-87343616 | Msa0384300:CDS | 35.0% | |
| ATTACTCTGGTATCCACAAA+GGG | - | chr3_1:87343743-87343762 | None:intergenic | 35.0% | |
| TTATTGTTGCTGCATTACTC+TGG | - | chr3_1:87343756-87343775 | None:intergenic | 35.0% | |
| ! | GAGATCTGAACGACACTTTT+TGG | - | chr3_1:87339519-87339538 | None:intergenic | 40.0% |
| TCAGATCTCAGAATCAACCA+TGG | + | chr3_1:87339530-87339549 | Msa0384300:exon | 40.0% | |
| CTTAAGCTTTCGTTCGATGA+TGG | - | chr3_1:87339592-87339611 | None:intergenic | 40.0% | |
| AATTTGATTGGGGACGAAGA+GGG | - | chr3_1:87339654-87339673 | None:intergenic | 40.0% | |
| TCTGAATCCGAACAGAATTC+TGG | + | chr3_1:87339675-87339694 | Msa0384300:CDS | 40.0% | |
| TGTCCCTGAAATTGAAAGCT+TGG | + | chr3_1:87339722-87339741 | Msa0384300:CDS | 40.0% | |
| GTCCCTGAAATTGAAAGCTT+GGG | + | chr3_1:87339723-87339742 | Msa0384300:CDS | 40.0% | |
| CACCCAAGCTTTCAATTTCA+GGG | - | chr3_1:87339728-87339747 | None:intergenic | 40.0% | |
| AAATGTTACTGACACAGTCG+AGG | + | chr3_1:87339752-87339771 | Msa0384300:CDS | 40.0% | |
| ACAGTCGAGGAAAACGATTT+GGG | + | chr3_1:87339765-87339784 | Msa0384300:CDS | 40.0% | |
| TGACAATGATGGTTTCCATG+TGG | + | chr3_1:87340493-87340512 | Msa0384300:CDS | 40.0% | |
| GCTCAGAATCAATATCCACA+TGG | - | chr3_1:87340511-87340530 | None:intergenic | 40.0% | |
| GTGCTTAAATCATTCTCTGC+AGG | - | chr3_1:87340605-87340624 | None:intergenic | 40.0% | |
| TTAAGCACACCGCATATTGA+TGG | + | chr3_1:87340617-87340636 | Msa0384300:CDS | 40.0% | |
| ! | CGAATGATTTGCAGCATTGT+TGG | - | chr3_1:87340645-87340664 | None:intergenic | 40.0% |
| AATACCTGGGTATCATCAAC+AGG | - | chr3_1:87341077-87341096 | None:intergenic | 40.0% | |
| ATTAAAGAAGAGGCCCTCAA+TGG | + | chr3_1:87341206-87341225 | Msa0384300:CDS | 40.0% | |
| TTAAAGAAGAGGCCCTCAAT+GGG | + | chr3_1:87341207-87341226 | Msa0384300:CDS | 40.0% | |
| GCTTATTCAACTTCCCATTG+AGG | - | chr3_1:87341223-87341242 | None:intergenic | 40.0% | |
| CTTCAGATTTAGTCACTCAC+TGG | + | chr3_1:87341350-87341369 | Msa0384300:intron | 40.0% | |
| TTGGGATGAGCTTAGCTATA+TGG | + | chr3_1:87341457-87341476 | Msa0384300:intron | 40.0% | |
| !!! | GACAACCAATCCTTTTTTCC+AGG | + | chr3_1:87341655-87341674 | Msa0384300:intron | 40.0% |
| GAAGACCTGGAAAAAAGGAT+TGG | - | chr3_1:87341663-87341682 | None:intergenic | 40.0% | |
| !! | CATTATCTTGGAAGCGTTGT+AGG | - | chr3_1:87341824-87341843 | None:intergenic | 40.0% |
| CGCTTCCAAGATAATGAAGA+AGG | + | chr3_1:87341828-87341847 | Msa0384300:CDS | 40.0% | |
| ATCTGACGATGAAGTTGAAG+AGG | + | chr3_1:87342025-87342044 | Msa0384300:CDS | 40.0% | |
| TTGATCTTCACAGCATCAGA+TGG | - | chr3_1:87342113-87342132 | None:intergenic | 40.0% | |
| CTTTATCCGTAAACATCTGC+GGG | - | chr3_1:87342160-87342179 | None:intergenic | 40.0% | |
| ATCATCTGATGAGGAAACTG+AGG | + | chr3_1:87342193-87342212 | Msa0384300:CDS | 40.0% | |
| TCTATAAGAGAGGGACTGTT+TGG | - | chr3_1:87342228-87342247 | None:intergenic | 40.0% | |
| TTCCATCTTTGCATGCACTA+AGG | + | chr3_1:87342324-87342343 | Msa0384300:intron | 40.0% | |
| TACCTTAGTGCATGCAAAGA+TGG | - | chr3_1:87342329-87342348 | None:intergenic | 40.0% | |
| ! | GAACGCTCAATTCTTTTCAC+CGG | + | chr3_1:87342413-87342432 | Msa0384300:CDS | 40.0% |
| CTGATTGGTGTACATTGCAT+AGG | - | chr3_1:87342567-87342586 | None:intergenic | 40.0% | |
| CTATGCAATGTACACCAATC+AGG | + | chr3_1:87342565-87342584 | Msa0384300:intron | 40.0% | |
| AATGGAACAAACCGTTAGCA+TGG | - | chr3_1:87342605-87342624 | None:intergenic | 40.0% | |
| ATGGCTGCAGCATACAATAA+TGG | - | chr3_1:87342623-87342642 | None:intergenic | 40.0% | |
| !!! | GTTATGTTTTGGCCAATGTG+TGG | - | chr3_1:87342656-87342675 | None:intergenic | 40.0% |
| ATGCCTTCTTCTCAAAAGCA+TGG | + | chr3_1:87342939-87342958 | Msa0384300:CDS | 40.0% | |
| !! | GATCCATGCTTTTGAGAAGA+AGG | - | chr3_1:87342945-87342964 | None:intergenic | 40.0% |
| ! | TCAAAAGCATGGATCAAGCA+AGG | + | chr3_1:87342950-87342969 | Msa0384300:CDS | 40.0% |
| GTCAGAGGATTCTTCAGATA+CGG | + | chr3_1:87343031-87343050 | Msa0384300:CDS | 40.0% | |
| GCATGATTTAGTGGAATCTG+TGG | + | chr3_1:87343214-87343233 | Msa0384300:intron | 40.0% | |
| CACTGATGGAGATATTAAGC+AGG | + | chr3_1:87343494-87343513 | Msa0384300:CDS | 40.0% | |
| CATTACTCTGGTATCCACAA+AGG | - | chr3_1:87343744-87343763 | None:intergenic | 40.0% | |
| GAAATCATCGTCGCTATCCA+TGG | - | chr3_1:87339550-87339569 | None:intergenic | 45.0% | |
| !! | GATGATGGGAGAAGAAGGTA+AGG | - | chr3_1:87339577-87339596 | None:intergenic | 45.0% |
| !! | AGCGTTTGAAGAAGGCATCT+AGG | + | chr3_1:87339610-87339629 | Msa0384300:CDS | 45.0% |
| !! | GCGTTTGAAGAAGGCATCTA+GGG | + | chr3_1:87339611-87339630 | Msa0384300:CDS | 45.0% |
| ATTTGATTGGGGACGAAGAG+GGG | - | chr3_1:87339653-87339672 | None:intergenic | 45.0% | |
| GAATTTGATTGGGGACGAAG+AGG | - | chr3_1:87339655-87339674 | None:intergenic | 45.0% | |
| ! | ATCCGAACAGAATTCTGGCT+TGG | + | chr3_1:87339680-87339699 | Msa0384300:CDS | 45.0% |
| CTCCAAGCCAGAATTCTGTT+CGG | - | chr3_1:87339685-87339704 | None:intergenic | 45.0% | |
| CCACCCAAGCTTTCAATTTC+AGG | - | chr3_1:87339729-87339748 | None:intergenic | 45.0% | |
| CCTGAAATTGAAAGCTTGGG+TGG | + | chr3_1:87339726-87339745 | Msa0384300:CDS | 45.0% | |
| CACAGTCGAGGAAAACGATT+TGG | + | chr3_1:87339764-87339783 | Msa0384300:CDS | 45.0% | |
| ! | AAAACGATTTGGGTGCGAAG+AGG | + | chr3_1:87339775-87339794 | Msa0384300:CDS | 45.0% |
| ! | AAACGATTTGGGTGCGAAGA+GGG | + | chr3_1:87339776-87339795 | Msa0384300:CDS | 45.0% |
| !! | TATTGTCTTCTCTGGAACCC+TGG | - | chr3_1:87339838-87339857 | None:intergenic | 45.0% |
| AAGAGCAGTGACGACAGTAA+CGG | + | chr3_1:87339981-87340000 | Msa0384300:CDS | 45.0% | |
| TGCGTTTAAACCTGTTCCTC+TGG | + | chr3_1:87340291-87340310 | Msa0384300:CDS | 45.0% | |
| ! | GAAGCCGATTTCGTCTATAC+TGG | + | chr3_1:87340318-87340337 | Msa0384300:CDS | 45.0% |
| ! | ACACTAATGGATACCTGGGT+TGG | + | chr3_1:87340445-87340464 | Msa0384300:intron | 45.0% |
| ! | CACTAATGGATACCTGGGTT+GGG | + | chr3_1:87340446-87340465 | Msa0384300:intron | 45.0% |
| ! | TTAGATCTGAAACCCAACCC+AGG | - | chr3_1:87340461-87340480 | None:intergenic | 45.0% |
| AGCTGGTGTTTCTTCGGATT+CGG | - | chr3_1:87340576-87340595 | None:intergenic | 45.0% | |
| GCATGTAGCTGGTGTTTCTT+CGG | - | chr3_1:87340582-87340601 | None:intergenic | 45.0% | |
| CATTGCTTACGCTGAGTTTC+AGG | + | chr3_1:87341016-87341035 | Msa0384300:intron | 45.0% | |
| TTACGCTGAGTTTCAGGATG+TGG | + | chr3_1:87341022-87341041 | Msa0384300:intron | 45.0% | |
| AGATGGGGCAAACACTTCTT+CGG | - | chr3_1:87341249-87341268 | None:intergenic | 45.0% | |
| GCTAAGCTCATCCCAAAGTA+AGG | - | chr3_1:87341453-87341472 | None:intergenic | 45.0% | |
| CATCGGAAGACCTGGAAAAA+AGG | - | chr3_1:87341668-87341687 | None:intergenic | 45.0% | |
| CTTGTCATTGTCCTCGTCAT+CGG | - | chr3_1:87341685-87341704 | None:intergenic | 45.0% | |
| GACTTGTCTTTACCTGCAAG+CGG | + | chr3_1:87341738-87341757 | Msa0384300:CDS | 45.0% | |
| CATCGACAAAAGCCTTGACA+GGG | - | chr3_1:87341767-87341786 | None:intergenic | 45.0% | |
| TCATCGACAAAAGCCTTGAC+AGG | - | chr3_1:87341768-87341787 | None:intergenic | 45.0% | |
| GTCACTGTCATCTTCCTCTT+CGG | - | chr3_1:87341796-87341815 | None:intergenic | 45.0% | |
| TTGAGCAGCAGGATACAACT+GGG | + | chr3_1:87341955-87341974 | Msa0384300:CDS | 45.0% | |
| TGAAGTTGAAGAGGAAGACG+AGG | + | chr3_1:87342034-87342053 | Msa0384300:CDS | 45.0% | |
| GATGATCCCGCAGATGTTTA+CGG | + | chr3_1:87342151-87342170 | Msa0384300:CDS | 45.0% | |
| !! | GGATAAAGGAGCACTTCATC+AGG | - | chr3_1:87342729-87342748 | None:intergenic | 45.0% |
| !! | ACCTTCAGTGTTGATGTCAG+AGG | + | chr3_1:87343016-87343035 | Msa0384300:CDS | 45.0% |
| TCCTCTGACATCAACACTGA+AGG | - | chr3_1:87343020-87343039 | None:intergenic | 45.0% | |
| TCTACTGTCATACTCACTCC+TGG | + | chr3_1:87343341-87343360 | Msa0384300:intron | 45.0% | |
| TCACTCCTGGTTTCTCTGTT+CGG | + | chr3_1:87343354-87343373 | Msa0384300:intron | 45.0% | |
| TACAACCGAACAGAGAAACC+AGG | - | chr3_1:87343362-87343381 | None:intergenic | 45.0% | |
| ! | AAGCGTTGTGTCAAGAATGC+CGG | + | chr3_1:87343532-87343551 | Msa0384300:CDS | 45.0% |
| !! | CGTTCGATGATGGGAGAAGA+AGG | - | chr3_1:87339582-87339601 | None:intergenic | 50.0% |
| !! | CGAACAGAATTCTGGCTTGG+AGG | + | chr3_1:87339683-87339702 | Msa0384300:CDS | 50.0% |
| !! | TCTGGCTTGGAGGAGTCAAT+TGG | + | chr3_1:87339693-87339712 | Msa0384300:CDS | 50.0% |
| ! | TTTGGGTGCGAAGAGGGTTT+TGG | + | chr3_1:87339782-87339801 | Msa0384300:CDS | 50.0% |
| !! | GCGAAGAAGTCTCTGAGACT+CGG | - | chr3_1:87340171-87340190 | None:intergenic | 50.0% |
| GAGTCTCAGAGACTTCTTCG+CGG | + | chr3_1:87340170-87340189 | Msa0384300:CDS | 50.0% | |
| ! | GAAATCGGCTTCTGAACCAG+AGG | - | chr3_1:87340310-87340329 | None:intergenic | 50.0% |
| ATCTCTTCACTAGGATGGCG+AGG | - | chr3_1:87340533-87340552 | None:intergenic | 50.0% | |
| !! | AGCTCCTGTTGATGATACCC+AGG | + | chr3_1:87341070-87341089 | Msa0384300:CDS | 50.0% |
| CGATGACGAGGACAATGACA+AGG | + | chr3_1:87341683-87341702 | Msa0384300:CDS | 50.0% | |
| AACACAGTGCCACACTCACA+TGG | + | chr3_1:87341708-87341727 | Msa0384300:CDS | 50.0% | |
| TCAGCTGATCCATGTGAGTG+TGG | - | chr3_1:87341720-87341739 | None:intergenic | 50.0% | |
| TGTCGATGAAGAAGCCGAAG+AGG | + | chr3_1:87341779-87341798 | Msa0384300:CDS | 50.0% | |
| GTGACCAACTCCATCAGCAA+TGG | + | chr3_1:87341931-87341950 | Msa0384300:CDS | 50.0% | |
| CAAGCCATTGCTGATGGAGT+TGG | - | chr3_1:87341938-87341957 | None:intergenic | 50.0% | |
| CTTGAGCAGCAGGATACAAC+TGG | + | chr3_1:87341954-87341973 | Msa0384300:CDS | 50.0% | |
| CTGATGAGGAAACTGAGGAG+AGG | + | chr3_1:87342198-87342217 | Msa0384300:CDS | 50.0% | |
| !! | CTGCTGCTTTCATCTTCAGC+CGG | - | chr3_1:87342435-87342454 | None:intergenic | 50.0% |
| GGCTGAAGATGAAAGCAGCA+GGG | + | chr3_1:87342434-87342453 | Msa0384300:CDS | 50.0% | |
| GCTGAAGATGAAAGCAGCAG+GGG | + | chr3_1:87342435-87342454 | Msa0384300:CDS | 50.0% | |
| !! | TGCTAGTCTTTCCGTGCGTT+TGG | + | chr3_1:87343701-87343720 | Msa0384300:three_prime_UTR | 50.0% |
| !! | GCTAGTCTTTCCGTGCGTTT+GGG | + | chr3_1:87343702-87343721 | Msa0384300:three_prime_UTR | 50.0% |
| !! | TCCGTGCGTTTGGGTTTTGT+TGG | + | chr3_1:87343711-87343730 | Msa0384300:three_prime_UTR | 50.0% |
| GCCAACAAAACCCAAACGCA+CGG | - | chr3_1:87343715-87343734 | None:intergenic | 50.0% | |
| TTGTTGGCCAGTTCCCTTTG+TGG | + | chr3_1:87343727-87343746 | Msa0384300:three_prime_UTR | 50.0% | |
| CTGGTATCCACAAAGGGAAC+TGG | - | chr3_1:87343737-87343756 | None:intergenic | 50.0% | |
| GGCTTGGAGGAGTCAATTGG+AGG | + | chr3_1:87339696-87339715 | Msa0384300:CDS | 55.0% | |
| TGGACGATGAACTTGACGCC+AGG | + | chr3_1:87339817-87339836 | Msa0384300:CDS | 55.0% | |
| GGACGATGAACTTGACGCCA+GGG | + | chr3_1:87339818-87339837 | Msa0384300:CDS | 55.0% | |
| GGCTTCTGAACCAGAGGAAC+AGG | - | chr3_1:87340304-87340323 | None:intergenic | 55.0% | |
| TTCTCTGCAGGGCATGTAGC+TGG | - | chr3_1:87340593-87340612 | None:intergenic | 55.0% | |
| TTCCAGGTCTTCCGATGACG+AGG | + | chr3_1:87341671-87341690 | Msa0384300:intron | 55.0% | |
| GCTGCTCAAGCCATTGCTGA+TGG | - | chr3_1:87341944-87341963 | None:intergenic | 55.0% | |
| TCAGCAATGGCTTGAGCAGC+AGG | + | chr3_1:87341944-87341963 | Msa0384300:CDS | 55.0% | |
| GCAGCAGGATACAACTGGGA+TGG | + | chr3_1:87341959-87341978 | Msa0384300:CDS | 55.0% | |
| CGGCTGAAGATGAAAGCAGC+AGG | + | chr3_1:87342433-87342452 | Msa0384300:CDS | 55.0% | |
| ATTGGGGACGAAGAGGGGAG+AGG | - | chr3_1:87339648-87339667 | None:intergenic | 60.0% | |
| GTCCTCGTCATCGGAAGACC+TGG | - | chr3_1:87341676-87341695 | None:intergenic | 60.0% | |
| TTGACAGGGTCACCGCTTGC+AGG | - | chr3_1:87341753-87341772 | None:intergenic | 60.0% | |
| TGCAAGCGGTGACCCTGTCA+AGG | + | chr3_1:87341752-87341771 | Msa0384300:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 87339469 | 87343821 | 87339469 | ID=Msa0384300;Name=Msa0384300 |
| chr3_1 | mRNA | 87339469 | 87343821 | 87339469 | ID=Msa0384300-mRNA-1;Parent=Msa0384300;Name=Msa0384300-mRNA-1;_AED=0.09;_eAED=0.09;_QI=80|1|1|1|1|1|11|191|734 |
| chr3_1 | exon | 87339469 | 87340055 | 87339469 | ID=Msa0384300-mRNA-1:exon:23326;Parent=Msa0384300-mRNA-1 |
| chr3_1 | exon | 87340137 | 87340191 | 87340137 | ID=Msa0384300-mRNA-1:exon:23327;Parent=Msa0384300-mRNA-1 |
| chr3_1 | exon | 87340278 | 87340377 | 87340278 | ID=Msa0384300-mRNA-1:exon:23328;Parent=Msa0384300-mRNA-1 |
| chr3_1 | exon | 87340475 | 87340691 | 87340475 | ID=Msa0384300-mRNA-1:exon:23329;Parent=Msa0384300-mRNA-1 |
| chr3_1 | exon | 87341038 | 87341091 | 87341038 | ID=Msa0384300-mRNA-1:exon:23330;Parent=Msa0384300-mRNA-1 |
| chr3_1 | exon | 87341176 | 87341318 | 87341176 | ID=Msa0384300-mRNA-1:exon:23331;Parent=Msa0384300-mRNA-1 |
| chr3_1 | exon | 87341677 | 87342250 | 87341677 | ID=Msa0384300-mRNA-1:exon:23332;Parent=Msa0384300-mRNA-1 |
| chr3_1 | exon | 87342408 | 87342522 | 87342408 | ID=Msa0384300-mRNA-1:exon:23333;Parent=Msa0384300-mRNA-1 |
| chr3_1 | exon | 87342639 | 87342688 | 87342639 | ID=Msa0384300-mRNA-1:exon:23334;Parent=Msa0384300-mRNA-1 |
| chr3_1 | exon | 87342906 | 87343052 | 87342906 | ID=Msa0384300-mRNA-1:exon:23335;Parent=Msa0384300-mRNA-1 |
| chr3_1 | exon | 87343388 | 87343821 | 87343388 | ID=Msa0384300-mRNA-1:exon:23336;Parent=Msa0384300-mRNA-1 |
| chr3_1 | five_prime_UTR | 87339469 | 87339548 | 87339469 | ID=Msa0384300-mRNA-1:five_prime_utr;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87339549 | 87340055 | 87339549 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87340137 | 87340191 | 87340137 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87340278 | 87340377 | 87340278 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87340475 | 87340691 | 87340475 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87341038 | 87341091 | 87341038 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87341176 | 87341318 | 87341176 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87341677 | 87342250 | 87341677 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87342408 | 87342522 | 87342408 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87342639 | 87342688 | 87342639 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87342906 | 87343052 | 87342906 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | CDS | 87343388 | 87343630 | 87343388 | ID=Msa0384300-mRNA-1:cds;Parent=Msa0384300-mRNA-1 |
| chr3_1 | three_prime_UTR | 87343631 | 87343821 | 87343631 | ID=Msa0384300-mRNA-1:three_prime_utr;Parent=Msa0384300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
