Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791730 | XP_013462110.1 | 95.640 | 734 | 31 | 1 | 1 | 734 | 1 | 733 | 0.0 | 1238 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791730 | A0A072VD92 | 95.640 | 734 | 31 | 1 | 1 | 734 | 1 | 733 | 0.0 | 1238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018160 | Msa0791730 | 0.804538 | 2.059031e-49 | -8.615850e-47 |
| Msa0027280 | Msa0791730 | 0.824192 | 9.222360e-54 | -8.615850e-47 |
| Msa0035140 | Msa0791730 | 0.806884 | 6.622054e-50 | -8.615850e-47 |
| Msa0036870 | Msa0791730 | 0.832960 | 7.016272e-56 | -8.615850e-47 |
| Msa0052260 | Msa0791730 | 0.813081 | 3.065291e-51 | -8.615850e-47 |
| Msa0091360 | Msa0791730 | 0.808917 | 2.446244e-50 | -8.615850e-47 |
| Msa0608330 | Msa0791730 | 0.803125 | 4.046853e-49 | -8.615850e-47 |
| Msa0761670 | Msa0791730 | 0.832607 | 8.585092e-56 | -8.615850e-47 |
| Msa0791730 | Msa1081390 | 0.825978 | 3.491249e-54 | -8.615850e-47 |
| Msa0791730 | Msa1116220 | 0.827051 | 1.936715e-54 | -8.615850e-47 |
| Msa0791730 | Msa1116660 | 0.813862 | 2.065040e-51 | -8.615850e-47 |
| Msa0791730 | Msa1116740 | 0.804645 | 1.955466e-49 | -8.615850e-47 |
| Msa0791730 | Msa1162590 | 0.804086 | 2.557717e-49 | -8.615850e-47 |
| Msa0791730 | Msa1268630 | 0.807353 | 5.268182e-50 | -8.615850e-47 |
| Msa0791730 | Msa1343170 | 0.821050 | 4.961766e-53 | -8.615850e-47 |
| Msa0791730 | Msa1343180 | 0.808920 | 2.443694e-50 | -8.615850e-47 |
| Msa0791730 | Msa1372040 | 0.824348 | 8.473709e-54 | -8.615850e-47 |
| Msa0791730 | Msa1454140 | 0.807105 | 5.947104e-50 | -8.615850e-47 |
| Msa0190570 | Msa0791730 | 0.810046 | 1.400628e-50 | -8.615850e-47 |
| Msa0200050 | Msa0791730 | 0.813647 | 2.302505e-51 | -8.615850e-47 |
| Msa0384300 | Msa0791730 | 0.943489 | 1.098263e-102 | -8.615850e-47 |
| Msa0419700 | Msa0791730 | 0.819866 | 9.275851e-53 | -8.615850e-47 |
| Msa0478680 | Msa0791730 | 0.955338 | 3.817561e-113 | -8.615850e-47 |
| Msa0242590 | Msa0791730 | 0.821401 | 4.116877e-53 | -8.615850e-47 |
| Msa0280790 | Msa0791730 | 0.820368 | 7.116873e-53 | -8.615850e-47 |
| Msa0298470 | Msa0791730 | 0.802831 | 4.653690e-49 | -8.615850e-47 |
| Msa0495550 | Msa0791730 | 0.807303 | 5.398679e-50 | -8.615850e-47 |
| Msa0511750 | Msa0791730 | 0.809479 | 1.854365e-50 | -8.615850e-47 |
| Msa0522760 | Msa0791730 | 0.914460 | 1.868397e-84 | -8.615850e-47 |
| Msa0557460 | Msa0791730 | 0.819974 | 8.761599e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791730 | MtrunA17_Chr3g0141461 | 95.640 | 734 | 31 | 1 | 1 | 734 | 1 | 733 | 0.0 | 1238 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791730 | AT1G75150.2 | 34.895 | 811 | 392 | 30 | 12 | 734 | 14 | 776 | 6.55e-68 | 239 |
| Msa0791730 | AT1G75150.1 | 34.944 | 807 | 389 | 30 | 12 | 730 | 14 | 772 | 1.79e-67 | 238 |
| Msa0791730 | AT1G75150.3 | 34.969 | 815 | 378 | 29 | 12 | 730 | 14 | 772 | 1.84e-67 | 238 |
Find 164 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGAGTGGATTATTTATT+AGG | 0.102842 | 5_3:-2794560 | Msa0791730:three_prime_UTR |
| TTGAACCGCAATTAAGTTTC+TGG | 0.119108 | 5_3:+2796366 | None:intergenic |
| CCACCCAAGCTTTCAATTTC+AGG | 0.163653 | 5_3:+2798632 | None:intergenic |
| GTCCGATCATCATATATATT+TGG | 0.169505 | 5_3:-2795386 | Msa0791730:CDS |
| CTGTGTATTTCTTTGGAATT+TGG | 0.196893 | 5_3:+2794933 | None:intergenic |
| ATTTGTTCTGTGTATTTCTT+TGG | 0.223685 | 5_3:+2794926 | None:intergenic |
| CGGTTGTATCTCAGATTATA+AGG | 0.256841 | 5_3:-2794984 | Msa0791730:intron |
| TCTGAATCCGAACAGAATTC+TGG | 0.266048 | 5_3:-2798683 | Msa0791730:CDS |
| TGCTAGTCTTTCCGTGCGTT+TGG | 0.280883 | 5_3:-2794657 | Msa0791730:three_prime_UTR |
| AAAGAGTGGATTATTTATTA+GGG | 0.285163 | 5_3:-2794559 | Msa0791730:three_prime_UTR |
| GATTCTTCTATTGTCTTCTC+TGG | 0.285609 | 5_3:+2798515 | None:intergenic |
| CTCTTATAAGCAGAAATCTT+TGG | 0.297379 | 5_3:+2794691 | None:intergenic |
| CATCACCTTCTTCATTATCT+TGG | 0.303254 | 5_3:+2796525 | None:intergenic |
| TTTGGGTGCGAAGAGGGTTT+TGG | 0.306380 | 5_3:-2798576 | Msa0791730:CDS |
| GTTCCTGATACCAAGATAAA+AGG | 0.307705 | 5_3:-2795869 | Msa0791730:CDS |
| CATTATCTTGGAAGCGTTGT+AGG | 0.308701 | 5_3:+2796537 | None:intergenic |
| TTGATGATTTAGTTATGTTT+TGG | 0.309038 | 5_3:+2795694 | None:intergenic |
| GAGAAGACAATAGAAGAATC+TGG | 0.335300 | 5_3:-2798512 | Msa0791730:CDS |
| CACAGTCGAGGAAAACGATT+TGG | 0.339867 | 5_3:-2798594 | Msa0791730:CDS |
| AAGTTCATTGAAAGCATAGA+TGG | 0.344830 | 5_3:+2797095 | None:intergenic |
| AGCTGGTGTTTCTTCGGATT+CGG | 0.359251 | 5_3:+2797785 | None:intergenic |
| GATGATCCCGCAGATGTTTA+CGG | 0.359304 | 5_3:-2796207 | Msa0791730:CDS |
| TCCGATCATCATATATATTT+GGG | 0.359571 | 5_3:-2795385 | Msa0791730:CDS |
| CTTAAGCTTTCGTTCGATGA+TGG | 0.368541 | 5_3:+2798769 | None:intergenic |
| GAAGCCGATTTCGTCTATAC+TGG | 0.369525 | 5_3:-2798040 | Msa0791730:CDS |
| TTAACCTTATCGAATTGAAA+TGG | 0.371697 | 5_3:+2798883 | None:intergenic |
| CGAATGATTTGCAGCATTGT+TGG | 0.374760 | 5_3:+2797716 | None:intergenic |
| GTCACTGTCATCTTCCTCTT+CGG | 0.375822 | 5_3:+2796565 | None:intergenic |
| GCTAGTCTTTCCGTGCGTTT+GGG | 0.379200 | 5_3:-2794656 | Msa0791730:three_prime_UTR |
| TTGACAGGGTCACCGCTTGC+AGG | 0.380630 | 5_3:+2796608 | None:intergenic |
| CACCCAAGCTTTCAATTTCA+GGG | 0.391601 | 5_3:+2798633 | None:intergenic |
| TTAAGCACACCGCATATTGA+TGG | 0.391706 | 5_3:-2797741 | Msa0791730:CDS |
| TCGGATTCAGAGAATTTGAT+TGG | 0.402079 | 5_3:+2798695 | None:intergenic |
| TCTATAAGAGAGGGACTGTT+TGG | 0.404011 | 5_3:+2796133 | None:intergenic |
| CTTGAGCAGCAGGATACAAC+TGG | 0.406510 | 5_3:-2796404 | Msa0791730:CDS |
| GGCTTCTGAACCAGAGGAAC+AGG | 0.406665 | 5_3:+2798057 | None:intergenic |
| GCATGTAGCTGGTGTTTCTT+CGG | 0.408069 | 5_3:+2797779 | None:intergenic |
| CGGATTCAGAGAATTTGATT+GGG | 0.410649 | 5_3:+2798696 | None:intergenic |
| CTTAATGATATGATAGCAAC+TGG | 0.412906 | 5_3:-2796482 | Msa0791730:CDS |
| GAAGAAGTTTCAGAGAAGAA+AGG | 0.421975 | 5_3:-2798425 | Msa0791730:CDS |
| TGCGTTTAAACCTGTTCCTC+TGG | 0.431252 | 5_3:-2798067 | Msa0791730:CDS |
| CGATCCATTTCAATTCGATA+AGG | 0.434556 | 5_3:-2798887 | Msa0791730:five_prime_UTR |
| TCAGCAATGGCTTGAGCAGC+AGG | 0.435184 | 5_3:-2796414 | Msa0791730:CDS |
| AAGAAGTTTCAGAGAAGAAA+GGG | 0.443719 | 5_3:-2798424 | Msa0791730:CDS |
| TTGTTGGCCAGTTCCCTTTG+TGG | 0.444676 | 5_3:-2794631 | Msa0791730:three_prime_UTR |
| TCTGGCTTGGAGGAGTCAAT+TGG | 0.447780 | 5_3:-2798665 | Msa0791730:CDS |
| TTAAGCTTTCGTTCGATGAT+GGG | 0.448047 | 5_3:+2798770 | None:intergenic |
| CTTATTCAACTTCCCATTGA+GGG | 0.450679 | 5_3:+2797139 | None:intergenic |
| TGTCCCTGAAATTGAAAGCT+TGG | 0.451837 | 5_3:-2798636 | Msa0791730:CDS |
| GAATTTGGCAGAAACAACTT+TGG | 0.454646 | 5_3:+2794948 | None:intergenic |
| TTCTCTGCAGGGCATGTAGC+TGG | 0.454937 | 5_3:+2797768 | None:intergenic |
| TTATCCAGTATAGACGAAAT+CGG | 0.455844 | 5_3:+2798036 | None:intergenic |
| ACAACGCTTTGTATGATTTG+AGG | 0.457574 | 5_3:+2794840 | None:intergenic |
| GTGCTTAAATCATTCTCTGC+AGG | 0.458300 | 5_3:+2797756 | None:intergenic |
| ATTGGGGACGAAGAGGGGAG+AGG | 0.460416 | 5_3:+2798713 | None:intergenic |
| CTGGTATCCACAAAGGGAAC+TGG | 0.464311 | 5_3:+2794624 | None:intergenic |
| TCATCGACAAAAGCCTTGAC+AGG | 0.469980 | 5_3:+2796593 | None:intergenic |
| CGGCTGAAGATGAAAGCAGC+AGG | 0.472410 | 5_3:-2795925 | Msa0791730:CDS |
| TGAAAACATTCCTTCTCCTA+TGG | 0.473423 | 5_3:-2797688 | Msa0791730:intron |
| AATTTGGCAGAAACAACTTT+GGG | 0.476283 | 5_3:+2794949 | None:intergenic |
| CTGCTGCTTTCATCTTCAGC+CGG | 0.477500 | 5_3:+2795926 | None:intergenic |
| ACTTACACATCATCATCAAC+AGG | 0.478005 | 5_3:+2797056 | None:intergenic |
| AATGTGTGGCATATCAAATA+TGG | 0.478119 | 5_3:+2795719 | None:intergenic |
| TATTGTCTTCTCTGGAACCC+TGG | 0.480622 | 5_3:+2798523 | None:intergenic |
| GCTGCTCAAGCCATTGCTGA+TGG | 0.482598 | 5_3:+2796417 | None:intergenic |
| AATACCTGGGTATCATCAAC+AGG | 0.482930 | 5_3:+2797284 | None:intergenic |
| AGAAGACAATAGAAGAATCT+GGG | 0.485094 | 5_3:-2798511 | Msa0791730:CDS |
| ATTAAAGAAGAGGCCCTCAA+TGG | 0.488027 | 5_3:-2797152 | Msa0791730:CDS |
| CTCCAAGCCAGAATTCTGTT+CGG | 0.488135 | 5_3:+2798676 | None:intergenic |
| GTCCCTGAAATTGAAAGCTT+GGG | 0.492026 | 5_3:-2798635 | Msa0791730:CDS |
| CTGTTTGGCTAGCCTCTCCT+CGG | 0.493016 | 5_3:+2796148 | None:intergenic |
| CGTTCGATGATGGGAGAAGA+AGG | 0.495851 | 5_3:+2798779 | None:intergenic |
| AATTTGATTGGGGACGAAGA+GGG | 0.495924 | 5_3:+2798707 | None:intergenic |
| AGATGGGGCAAACACTTCTT+CGG | 0.497175 | 5_3:+2797112 | None:intergenic |
| AAAGCTTAAGCGTTTGAAGA+AGG | 0.498790 | 5_3:-2798756 | Msa0791730:CDS |
| ATTTGATTGGGGACGAAGAG+GGG | 0.499284 | 5_3:+2798708 | None:intergenic |
| ACGAAGAAGTCAATTAAGAC+AGG | 0.499928 | 5_3:-2794763 | Msa0791730:CDS |
| CAATAAAAGAAAAGCCGAAA+AGG | 0.503415 | 5_3:-2798324 | Msa0791730:intron |
| ATGCCTTCTTCTCAAAAGCA+TGG | 0.508089 | 5_3:-2795419 | Msa0791730:CDS |
| ACAGTCGAGGAAAACGATTT+GGG | 0.508680 | 5_3:-2798593 | Msa0791730:CDS |
| TTAAAGAAGAGGCCCTCAAT+GGG | 0.508936 | 5_3:-2797151 | Msa0791730:CDS |
| GCGTTTGAAGAAGGCATCTA+GGG | 0.510976 | 5_3:-2798747 | Msa0791730:CDS |
| CTTGTCATTGTCCTCGTCAT+CGG | 0.511285 | 5_3:+2796676 | None:intergenic |
| TTATTGTTGCTGCATTACTC+TGG | 0.511413 | 5_3:+2794605 | None:intergenic |
| TAGTTATCTCTTCACTAGGA+TGG | 0.511460 | 5_3:+2797823 | None:intergenic |
| GAAATCATCGTCGCTATCCA+TGG | 0.514126 | 5_3:+2798811 | None:intergenic |
| CGAACAGAATTCTGGCTTGG+AGG | 0.514744 | 5_3:-2798675 | Msa0791730:CDS |
| ATCCGAACAGAATTCTGGCT+TGG | 0.521666 | 5_3:-2798678 | Msa0791730:CDS |
| CTTTATCCGTAAACATCTGC+GGG | 0.523224 | 5_3:+2796201 | None:intergenic |
| GGCTTGGAGGAGTCAATTGG+AGG | 0.523443 | 5_3:-2798662 | Msa0791730:CDS |
| AAACGATTTGGGTGCGAAGA+GGG | 0.525559 | 5_3:-2798582 | Msa0791730:CDS |
| TTGAGATTTAGAAGTTGAAG+TGG | 0.527991 | 5_3:+2794900 | None:intergenic |
| TCTGAAACTTCTTCTACACT+AGG | 0.528815 | 5_3:+2798455 | None:intergenic |
| ATCTGACGATGAAGTTGAAG+AGG | 0.529423 | 5_3:-2796333 | Msa0791730:CDS |
| CGCTTCCAAGATAATGAAGA+AGG | 0.530519 | 5_3:-2796530 | Msa0791730:CDS |
| GTCAGAGGATTCTTCAGATA+CGG | 0.530551 | 5_3:-2795327 | Msa0791730:intron |
| AGAGTCAAATGTATCACTGA+TGG | 0.535371 | 5_3:-2794878 | Msa0791730:CDS |
| TTATTAGTTATCTCTTCACT+AGG | 0.535949 | 5_3:+2797819 | None:intergenic |
| GCTTATTCAACTTCCCATTG+AGG | 0.539326 | 5_3:+2797138 | None:intergenic |
| GGTTGTATCTCAGATTATAA+GGG | 0.541946 | 5_3:-2794983 | Msa0791730:intron |
| TGGACGATGAACTTGACGCC+AGG | 0.542343 | 5_3:-2798541 | Msa0791730:CDS |
| AGCGTTTGAAGAAGGCATCT+AGG | 0.544573 | 5_3:-2798748 | Msa0791730:CDS |
| AAGCGTTGTGTCAAGAATGC+CGG | 0.549269 | 5_3:-2794826 | Msa0791730:CDS |
| AATAAATGATATTAAAGAAG+AGG | 0.553156 | 5_3:-2797162 | Msa0791730:CDS |
| TCCCAAATATATATGATGAT+CGG | 0.554179 | 5_3:+2795384 | None:intergenic |
| TACTGGATAAAATTCGAAAG+AGG | 0.561886 | 5_3:-2798023 | Msa0791730:CDS |
| TTGATCTTCACAGCATCAGA+TGG | 0.562695 | 5_3:+2796248 | None:intergenic |
| CACTGATGGAGATATTAAGC+AGG | 0.563186 | 5_3:-2794864 | Msa0791730:CDS |
| AGTTCATTGAAAGCATAGAT+GGG | 0.567377 | 5_3:+2797096 | None:intergenic |
| CGAAGAAGTCAATTAAGACA+GGG | 0.568898 | 5_3:-2794762 | Msa0791730:CDS |
| ATTACTCTGGTATCCACAAA+GGG | 0.570256 | 5_3:+2794618 | None:intergenic |
| TTCCAGGTCTTCCGATGACG+AGG | 0.572092 | 5_3:-2796687 | Msa0791730:intron |
| GCCAACAAAACCCAAACGCA+CGG | 0.575823 | 5_3:+2794646 | None:intergenic |
| ATCTCTTCACTAGGATGGCG+AGG | 0.576933 | 5_3:+2797828 | None:intergenic |
| CAAGCCATTGCTGATGGAGT+TGG | 0.580859 | 5_3:+2796423 | None:intergenic |
| AACACAGTGCCACACTCACA+TGG | 0.587089 | 5_3:-2796650 | Msa0791730:CDS |
| TGATGTATGATGTGAAATGA+TGG | 0.587888 | 5_3:-2794730 | Msa0791730:three_prime_UTR |
| AAACATAACTAAATCATCAA+AGG | 0.587995 | 5_3:-2795691 | Msa0791730:intron |
| TGCAAGCGGTGACCCTGTCA+AGG | 0.589300 | 5_3:-2796606 | Msa0791730:CDS |
| TCCTCTGACATCAACACTGA+AGG | 0.589871 | 5_3:+2795341 | None:intergenic |
| TGCTTAAATCATTCTCTGCA+GGG | 0.590079 | 5_3:+2797757 | None:intergenic |
| AACTCACAACTCTATAAGAG+AGG | 0.593686 | 5_3:+2796123 | None:intergenic |
| CATTACTCTGGTATCCACAA+AGG | 0.594086 | 5_3:+2794617 | None:intergenic |
| GACTTGTCTTTACCTGCAAG+CGG | 0.597345 | 5_3:-2796620 | Msa0791730:CDS |
| TGTGAAGATCAATCTGAAGA+AGG | 0.597643 | 5_3:-2796237 | Msa0791730:CDS |
| TGTCGATGAAGAAGCCGAAG+AGG | 0.600579 | 5_3:-2796579 | Msa0791730:CDS |
| ATATTTGATATGCCACACAT+TGG | 0.602377 | 5_3:-2795717 | Msa0791730:CDS |
| TATTGACTAACCATAGGAGA+AGG | 0.604545 | 5_3:+2797678 | None:intergenic |
| ACCTTCAGTGTTGATGTCAG+AGG | 0.605071 | 5_3:-2795342 | Msa0791730:CDS |
| GCAGCAGGATACAACTGGGA+TGG | 0.605675 | 5_3:-2796399 | Msa0791730:CDS |
| GAATTTGATTGGGGACGAAG+AGG | 0.606741 | 5_3:+2798706 | None:intergenic |
| GGATTCAGAGAATTTGATTG+GGG | 0.608596 | 5_3:+2798697 | None:intergenic |
| GATGATGGGAGAAGAAGGTA+AGG | 0.611648 | 5_3:+2798784 | None:intergenic |
| AGCTCCTGTTGATGATACCC+AGG | 0.611990 | 5_3:-2797288 | Msa0791730:intron |
| AAGAGCAGTGACGACAGTAA+CGG | 0.614383 | 5_3:-2798377 | Msa0791730:CDS |
| GGACGATGAACTTGACGCCA+GGG | 0.623312 | 5_3:-2798540 | Msa0791730:CDS |
| TCAAAAGCATGGATCAAGCA+AGG | 0.624049 | 5_3:-2795408 | Msa0791730:CDS |
| GAAGACAATAGAAGAATCTG+GGG | 0.628399 | 5_3:-2798510 | Msa0791730:CDS |
| AAAACGATTTGGGTGCGAAG+AGG | 0.629285 | 5_3:-2798583 | Msa0791730:CDS |
| ACTCACAACTCTATAAGAGA+GGG | 0.630084 | 5_3:+2796124 | None:intergenic |
| GCGAAGAAGTCTCTGAGACT+CGG | 0.630403 | 5_3:+2798190 | None:intergenic |
| TCTTTATCCGTAAACATCTG+CGG | 0.632377 | 5_3:+2796200 | None:intergenic |
| GGCTGAAGATGAAAGCAGCA+GGG | 0.633689 | 5_3:-2795924 | Msa0791730:CDS |
| CGATGACGAGGACAATGACA+AGG | 0.636882 | 5_3:-2796675 | Msa0791730:CDS |
| GTGACCAACTCCATCAGCAA+TGG | 0.642435 | 5_3:-2796427 | Msa0791730:CDS |
| GAGTCTCAGAGACTTCTTCG+CGG | 0.647421 | 5_3:-2798188 | Msa0791730:intron |
| CCTGAAATTGAAAGCTTGGG+TGG | 0.651371 | 5_3:-2798632 | Msa0791730:CDS |
| CTACTCCAGAAACTTAATTG+CGG | 0.654037 | 5_3:-2796371 | Msa0791730:CDS |
| CATCGACAAAAGCCTTGACA+GGG | 0.655621 | 5_3:+2796594 | None:intergenic |
| CTGATGAGGAAACCGAGGAG+AGG | 0.656184 | 5_3:-2796160 | Msa0791730:CDS |
| GCTGAAGATGAAAGCAGCAG+GGG | 0.663173 | 5_3:-2795923 | Msa0791730:CDS |
| AAATGTTACTGACACAGTCG+AGG | 0.668281 | 5_3:-2798606 | Msa0791730:CDS |
| TCAGCTGATCCATGTGAGTG+TGG | 0.671330 | 5_3:+2796641 | None:intergenic |
| GTTCATTGAAAGCATAGATG+GGG | 0.673358 | 5_3:+2797097 | None:intergenic |
| GAAATCGGCTTCTGAACCAG+AGG | 0.680025 | 5_3:+2798051 | None:intergenic |
| ATCATCTGATGAGGAAACCG+AGG | 0.680788 | 5_3:-2796165 | Msa0791730:CDS |
| TTGAGCAGCAGGATACAACT+GGG | 0.682128 | 5_3:-2796403 | Msa0791730:CDS |
| TCAGATCTCAGAATCAACCA+TGG | 0.682198 | 5_3:-2798828 | Msa0791730:exon |
| TGCATATGTATCATCTGATG+AGG | 0.684397 | 5_3:-2796174 | Msa0791730:CDS |
| GAAGAAGTCAATTAAGACAG+GGG | 0.696735 | 5_3:-2794761 | Msa0791730:CDS |
| TGAAGTTGAAGAGGAAGACG+AGG | 0.701412 | 5_3:-2796324 | Msa0791730:CDS |
| GCTCAGAATCAATATCCACA+TGG | 0.713481 | 5_3:+2797850 | None:intergenic |
| TGACAATGATGGCTTCCATG+TGG | 0.715727 | 5_3:-2797865 | Msa0791730:CDS |
| TTGTTGGAACCATCAATATG+CGG | 0.716098 | 5_3:+2797732 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGTTAAATAAAATTGT+AGG | - | chr5_3:2797844-2797863 | Msa0791730:CDS | 10.0% |
| !!! | ATTTGTTAAATAAAATTGTA+GGG | - | chr5_3:2797845-2797864 | Msa0791730:CDS | 10.0% |
| !! | ATTTAAATAGCATTTAAAAA+AGG | + | chr5_3:2798384-2798403 | None:intergenic | 10.0% |
| !! | ATTGTATAAAAATAATTCAC+TGG | + | chr5_3:2795164-2795183 | None:intergenic | 15.0% |
| !!! | TTTGTGTTAGTTTATTAAAT+GGG | - | chr5_3:2796044-2796063 | Msa0791730:intron | 15.0% |
| !! | AATAAATGATATTAAAGAAG+AGG | - | chr5_3:2796286-2796305 | Msa0791730:CDS | 15.0% |
| !! | TAAAATTAATAGATCTTACA+TGG | + | chr5_3:2797612-2797631 | None:intergenic | 15.0% |
| !!! | TTTTATTTAACAAATTTGCT+GGG | + | chr5_3:2797840-2797859 | None:intergenic | 15.0% |
| !!! | ATTTTATTTAACAAATTTGC+TGG | + | chr5_3:2797841-2797860 | None:intergenic | 15.0% |
| !! | TTTGTTAAATAAAATTGTAG+GGG | - | chr5_3:2797846-2797865 | Msa0791730:CDS | 15.0% |
| !!! | TGTTGATTCATTGATTTTAT+AGG | - | chr5_3:2795205-2795224 | Msa0791730:intron | 20.0% |
| !!! | AGAATTTTTAAAGAAGTAAG+TGG | - | chr5_3:2795453-2795472 | Msa0791730:CDS | 20.0% |
| !! | TTACTTTAGATAAACACTAA+TGG | - | chr5_3:2795522-2795541 | Msa0791730:intron | 20.0% |
| !!! | ATTGATTTTGAATATCTAAC+TGG | - | chr5_3:2795863-2795882 | Msa0791730:CDS | 20.0% |
| !!! | TTGATTTTGAATATCTAACT+GGG | - | chr5_3:2795864-2795883 | Msa0791730:CDS | 20.0% |
| !! | ATTCTATACTTTGTAACTTA+TGG | + | chr5_3:2795990-2796009 | None:intergenic | 20.0% |
| !!! | CTTTGTGTTAGTTTATTAAA+TGG | - | chr5_3:2796043-2796062 | Msa0791730:intron | 20.0% |
| !!! | TTTATTTGTCTTTGATTTCT+AGG | - | chr5_3:2796244-2796263 | Msa0791730:CDS | 20.0% |
| !! | ATAAACTATAATCCTTACTT+TGG | - | chr5_3:2796528-2796547 | Msa0791730:CDS | 20.0% |
| !! | TAAACTATAATCCTTACTTT+GGG | - | chr5_3:2796529-2796548 | Msa0791730:CDS | 20.0% |
| !!! | ATTTTTAATTTCCAGAACAA+TGG | + | chr5_3:2796725-2796744 | None:intergenic | 20.0% |
| !!! | ATTTTAGTATTTCACGAAAT+TGG | - | chr5_3:2797626-2797645 | Msa0791730:intron | 20.0% |
| !!! | TTGATGATTTAGTTATGTTT+TGG | + | chr5_3:2797757-2797776 | None:intergenic | 20.0% |
| !! | AAACATAACTAAATCATCAA+AGG | - | chr5_3:2797757-2797776 | Msa0791730:CDS | 20.0% |
| !! | TTGTTAAATAAAATTGTAGG+GGG | - | chr5_3:2797847-2797866 | Msa0791730:CDS | 20.0% |
| !!! | ATATTTCAGTCATCTTTTAT+CGG | - | chr5_3:2797987-2798006 | Msa0791730:intron | 20.0% |
| !! | TAGCATAATTCATAGAAAAA+TGG | + | chr5_3:2798203-2798222 | None:intergenic | 20.0% |
| !! | ATGCTAAACATAAATTTAGT+TGG | + | chr5_3:2798284-2798303 | None:intergenic | 20.0% |
| !!! | AATTTTCAATACAAAAAGAG+TGG | - | chr5_3:2798875-2798894 | Msa0791730:five_prime_UTR | 20.0% |
| !!! | AAAAGAGTGGATTATTTATT+AGG | - | chr5_3:2798888-2798907 | Msa0791730:five_prime_UTR | 20.0% |
| ! | TTAACCTTATCGAATTGAAA+TGG | + | chr5_3:2794568-2794587 | None:intergenic | 25.0% |
| !!! | TCTTGTTTCTAAACAAAACA+CGG | + | chr5_3:2795356-2795375 | None:intergenic | 25.0% |
| !! | ATAAACACTAATGGATACTT+GGG | - | chr5_3:2795531-2795550 | Msa0791730:intron | 25.0% |
| ! | TTATTAGTTATCTCTTCACT+AGG | + | chr5_3:2795632-2795651 | None:intergenic | 25.0% |
| ! | AATTGTATTGTATAACTAGC+TGG | + | chr5_3:2795798-2795817 | None:intergenic | 25.0% |
| ! | GCTAGTTATACAATACAATT+TGG | - | chr5_3:2795798-2795817 | Msa0791730:intron | 25.0% |
| !! | TGATTTTGAATATCTAACTG+GGG | - | chr5_3:2795865-2795884 | Msa0791730:CDS | 25.0% |
| ! | AACTAACACAAAGATTTCAA+GGG | + | chr5_3:2796036-2796055 | None:intergenic | 25.0% |
| ! | AAACTAACACAAAGATTTCA+AGG | + | chr5_3:2796037-2796056 | None:intergenic | 25.0% |
| !!! | AAGAAAGCATCTGAATAAAT+GGG | + | chr5_3:2796196-2796215 | None:intergenic | 25.0% |
| !!! | TAAGAAAGCATCTGAATAAA+TGG | + | chr5_3:2796197-2796216 | None:intergenic | 25.0% |
| ! | ACTAAATCTGAAGATAACAA+AGG | + | chr5_3:2796433-2796452 | None:intergenic | 25.0% |
| ! | ATAGACAATGAAACTTTATG+TGG | + | chr5_3:2796470-2796489 | None:intergenic | 25.0% |
| ! | TAGCTATATGGTTGTTAATT+TGG | - | chr5_3:2796559-2796578 | Msa0791730:CDS | 25.0% |
| !!! | GTTAATTTGGATTTTTACGT+TGG | - | chr5_3:2796572-2796591 | Msa0791730:CDS | 25.0% |
| !! | ATTTTTACGTTGGAAAATTC+TGG | - | chr5_3:2796582-2796601 | Msa0791730:CDS | 25.0% |
| ! | TATGATGAGAAAGTAAATGA+TGG | - | chr5_3:2796611-2796630 | Msa0791730:CDS | 25.0% |
| ! | GTTAAAGGAAAAAGATAAAC+AGG | + | chr5_3:2796651-2796670 | None:intergenic | 25.0% |
| ! | TACACTATGGAAGAATTAAA+AGG | + | chr5_3:2796683-2796702 | None:intergenic | 25.0% |
| !!! | TTTTAATTCTTCCATAGTGT+AGG | - | chr5_3:2796682-2796701 | Msa0791730:CDS | 25.0% |
| ! | TCAAAATTGTAATGTGTAAC+AGG | - | chr5_3:2797476-2797495 | Msa0791730:intron | 25.0% |
| ! | ATAACTAAATCATCAAAGGT+AGG | - | chr5_3:2797761-2797780 | Msa0791730:CDS | 25.0% |
| ! | TCCGATCATCATATATATTT+GGG | - | chr5_3:2798063-2798082 | Msa0791730:CDS | 25.0% |
| ! | TCCCAAATATATATGATGAT+CGG | + | chr5_3:2798067-2798086 | None:intergenic | 25.0% |
| ! | TTCATCAGTTGAAATTCATA+TGG | - | chr5_3:2798256-2798275 | Msa0791730:intron | 25.0% |
| ! | AATAGCATTTAAAAAAGGAG+AGG | + | chr5_3:2798379-2798398 | None:intergenic | 25.0% |
| ! | ATTTGTTCTGTGTATTTCTT+TGG | + | chr5_3:2798525-2798544 | None:intergenic | 25.0% |
| !!! | ACTTTTTGGTTTTTGGAAAC+AGG | + | chr5_3:2794595-2794614 | None:intergenic | 30.0% |
| AGAAGACAATAGAAGAATCT+GGG | - | chr5_3:2794937-2794956 | Msa0791730:CDS | 30.0% | |
| AAGAAGTTTCAGAGAAGAAA+GGG | - | chr5_3:2795003-2795022 | Msa0791730:intron | 30.0% | |
| ! | CTTTTCGGCTTTTCTTTTAT+TGG | + | chr5_3:2795126-2795145 | None:intergenic | 30.0% |
| CAATAAAAGAAAAGCCGAAA+AGG | - | chr5_3:2795124-2795143 | Msa0791730:intron | 30.0% | |
| ! | AAAACGCATACAAACCTTTT+CGG | + | chr5_3:2795141-2795160 | None:intergenic | 30.0% |
| CGGTAAACTAACTGAATAAT+TGG | + | chr5_3:2795336-2795355 | None:intergenic | 30.0% | |
| TTATCCAGTATAGACGAAAT+CGG | + | chr5_3:2795415-2795434 | None:intergenic | 30.0% | |
| TACTGGATAAAATTCGAAAG+AGG | - | chr5_3:2795425-2795444 | Msa0791730:CDS | 30.0% | |
| ! | GATAAACACTAATGGATACT+TGG | - | chr5_3:2795530-2795549 | Msa0791730:intron | 30.0% |
| ! | GTTTCTTTTCATGACAATGA+TGG | - | chr5_3:2795572-2795591 | Msa0791730:intron | 30.0% |
| GTTTATTAAATGGGAGATGT+TGG | - | chr5_3:2796053-2796072 | Msa0791730:intron | 30.0% | |
| ! | TCAAAGACAAATAAAGCACT+TGG | + | chr5_3:2796239-2796258 | None:intergenic | 30.0% |
| ! | AGTTCATTGAAAGCATAGAT+GGG | + | chr5_3:2796355-2796374 | None:intergenic | 30.0% |
| ! | AAGTTCATTGAAAGCATAGA+TGG | + | chr5_3:2796356-2796375 | None:intergenic | 30.0% |
| ! | CTTTTTCCTTTAACAAACCT+TGG | - | chr5_3:2796657-2796676 | Msa0791730:CDS | 30.0% |
| CTTAATGATATGATAGCAAC+TGG | - | chr5_3:2796966-2796985 | Msa0791730:intron | 30.0% | |
| !!! | TATTGCTGTCACTTTGATTT+TGG | - | chr5_3:2797375-2797394 | Msa0791730:intron | 30.0% |
| AATGTGTGGCATATCAAATA+TGG | + | chr5_3:2797732-2797751 | None:intergenic | 30.0% | |
| ATATTTGATATGCCACACAT+TGG | - | chr5_3:2797731-2797750 | Msa0791730:CDS | 30.0% | |
| !! | TAACAAATTTGCTGGGATAA+AGG | + | chr5_3:2797833-2797852 | None:intergenic | 30.0% |
| ! | TGCTGATAAAAACAGTTTTG+TGG | + | chr5_3:2797919-2797938 | None:intergenic | 30.0% |
| GTCCGATCATCATATATATT+TGG | - | chr5_3:2798062-2798081 | Msa0791730:CDS | 30.0% | |
| TAATACTACTAGAACTGTGA+TGG | - | chr5_3:2798328-2798347 | Msa0791730:CDS | 30.0% | |
| GGTTGTATCTCAGATTATAA+GGG | - | chr5_3:2798465-2798484 | Msa0791730:CDS | 30.0% | |
| AATTTGGCAGAAACAACTTT+GGG | + | chr5_3:2798502-2798521 | None:intergenic | 30.0% | |
| !! | CTGTGTATTTCTTTGGAATT+TGG | + | chr5_3:2798518-2798537 | None:intergenic | 30.0% |
| TTGAGATTTAGAAGTTGAAG+TGG | + | chr5_3:2798551-2798570 | None:intergenic | 30.0% | |
| TGATGTATGATGTGAAATGA+TGG | - | chr5_3:2798718-2798737 | Msa0791730:CDS | 30.0% | |
| CTCTTATAAGCAGAAATCTT+TGG | + | chr5_3:2798760-2798779 | None:intergenic | 30.0% | |
| CGATCCATTTCAATTCGATA+AGG | - | chr5_3:2794561-2794580 | Msa0791730:three_prime_UTR | 35.0% | |
| !!! | GAACGACACTTTTTGGTTTT+TGG | + | chr5_3:2794602-2794621 | None:intergenic | 35.0% |
| TTAAGCTTTCGTTCGATGAT+GGG | + | chr5_3:2794681-2794700 | None:intergenic | 35.0% | |
| AAAGCTTAAGCGTTTGAAGA+AGG | - | chr5_3:2794692-2794711 | Msa0791730:three_prime_UTR | 35.0% | |
| GGATTCAGAGAATTTGATTG+GGG | + | chr5_3:2794754-2794773 | None:intergenic | 35.0% | |
| CGGATTCAGAGAATTTGATT+GGG | + | chr5_3:2794755-2794774 | None:intergenic | 35.0% | |
| TCGGATTCAGAGAATTTGAT+TGG | + | chr5_3:2794756-2794775 | None:intergenic | 35.0% | |
| !!! | GGTTTTGGAGTTTGAATCTA+TGG | - | chr5_3:2794887-2794906 | Msa0791730:CDS | 35.0% |
| GATTCTTCTATTGTCTTCTC+TGG | + | chr5_3:2794936-2794955 | None:intergenic | 35.0% | |
| GAGAAGACAATAGAAGAATC+TGG | - | chr5_3:2794936-2794955 | Msa0791730:CDS | 35.0% | |
| GAAGACAATAGAAGAATCTG+GGG | - | chr5_3:2794938-2794957 | Msa0791730:CDS | 35.0% | |
| ! | TCTGAAACTTCTTCTACACT+AGG | + | chr5_3:2794996-2795015 | None:intergenic | 35.0% |
| GAAGAAGTTTCAGAGAAGAA+AGG | - | chr5_3:2795002-2795021 | Msa0791730:intron | 35.0% | |
| !!! | TTCGCGGTATGGATTTTTTT+TGG | - | chr5_3:2795276-2795295 | Msa0791730:intron | 35.0% |
| TGTTTCAGCATGCACTTAAT+TGG | - | chr5_3:2795492-2795511 | Msa0791730:intron | 35.0% | |
| GTTTCAGCATGCACTTAATT+GGG | - | chr5_3:2795493-2795512 | Msa0791730:intron | 35.0% | |
| TAGTTATCTCTTCACTAGGA+TGG | + | chr5_3:2795628-2795647 | None:intergenic | 35.0% | |
| TGCTTAAATCATTCTCTGCA+GGG | + | chr5_3:2795694-2795713 | None:intergenic | 35.0% | |
| TTGTTGGAACCATCAATATG+CGG | + | chr5_3:2795719-2795738 | None:intergenic | 35.0% | |
| ! | TAGGAGAAGGAATGTTTTCA+CGG | + | chr5_3:2795760-2795779 | None:intergenic | 35.0% |
| TGAAAACATTCCTTCTCCTA+TGG | - | chr5_3:2795760-2795779 | Msa0791730:intron | 35.0% | |
| ! | TATTGACTAACCATAGGAGA+AGG | + | chr5_3:2795773-2795792 | None:intergenic | 35.0% |
| ! | CTGGAATATTGACTAACCAT+AGG | + | chr5_3:2795779-2795798 | None:intergenic | 35.0% |
| !! | CTGCTCTCACTATATTTTGA+TGG | - | chr5_3:2795915-2795934 | Msa0791730:CDS | 35.0% |
| AAATGGGTGACATAATACCT+GGG | + | chr5_3:2796180-2796199 | None:intergenic | 35.0% | |
| TAAATGGGTGACATAATACC+TGG | + | chr5_3:2796181-2796200 | None:intergenic | 35.0% | |
| CTTATTCAACTTCCCATTGA+GGG | + | chr5_3:2796312-2796331 | None:intergenic | 35.0% | |
| ! | GTTCATTGAAAGCATAGATG+GGG | + | chr5_3:2796354-2796373 | None:intergenic | 35.0% |
| ACTTACACATCATCATCAAC+AGG | + | chr5_3:2796395-2796414 | None:intergenic | 35.0% | |
| ATCAGCAACGATGAAACAAA+TGG | + | chr5_3:2796502-2796521 | None:intergenic | 35.0% | |
| !! | AAAAGGCCAAGGTTTGTTAA+AGG | + | chr5_3:2796666-2796685 | None:intergenic | 35.0% |
| ATGGAAGAATTAAAAGGCCA+AGG | + | chr5_3:2796677-2796696 | None:intergenic | 35.0% | |
| AATTGAAGAGTCCTACACTA+TGG | + | chr5_3:2796696-2796715 | None:intergenic | 35.0% | |
| ! | CAATTTGCTTTCCATTGTTC+TGG | - | chr5_3:2796711-2796730 | Msa0791730:intron | 35.0% |
| CATCACCTTCTTCATTATCT+TGG | + | chr5_3:2796926-2796945 | None:intergenic | 35.0% | |
| ! | TGATGATGATGATGATATCG+AGG | - | chr5_3:2796941-2796960 | Msa0791730:intron | 35.0% |
| ! | TCACGCTTTTCTCTATCAAT+TGG | + | chr5_3:2797005-2797024 | None:intergenic | 35.0% |
| CTACTCCAGAAACTTAATTG+CGG | - | chr5_3:2797077-2797096 | Msa0791730:CDS | 35.0% | |
| TTGAACCGCAATTAAGTTTC+TGG | + | chr5_3:2797085-2797104 | None:intergenic | 35.0% | |
| TGTGAAGATCAATCTGAAGA+AGG | - | chr5_3:2797211-2797230 | Msa0791730:intron | 35.0% | |
| TCTTTATCCGTAAACATCTG+CGG | + | chr5_3:2797251-2797270 | None:intergenic | 35.0% | |
| TGCATATGTATCATCTGATG+AGG | - | chr5_3:2797274-2797293 | Msa0791730:intron | 35.0% | |
| ACTCACAACTCTATAAGAGA+GGG | + | chr5_3:2797327-2797346 | None:intergenic | 35.0% | |
| AACTCACAACTCTATAAGAG+AGG | + | chr5_3:2797328-2797347 | None:intergenic | 35.0% | |
| GTTCCTGATACCAAGATAAA+AGG | - | chr5_3:2797579-2797598 | Msa0791730:intron | 35.0% | |
| ! | CTTCCTTTTATCTTGGTATC+AGG | + | chr5_3:2797585-2797604 | None:intergenic | 35.0% |
| ! | TGGAGTTCTTCCTTTTATCT+TGG | + | chr5_3:2797592-2797611 | None:intergenic | 35.0% |
| TCATAATCTTGAAGCCTGAT+TGG | + | chr5_3:2797672-2797691 | None:intergenic | 35.0% | |
| CAAGATTATGACCATGCTAA+CGG | - | chr5_3:2797681-2797700 | Msa0791730:intron | 35.0% | |
| GTTTAGCATGCATGATTTAG+TGG | - | chr5_3:2798295-2798314 | Msa0791730:intron | 35.0% | |
| CGGTTGTATCTCAGATTATA+AGG | - | chr5_3:2798464-2798483 | Msa0791730:CDS | 35.0% | |
| GAATTTGGCAGAAACAACTT+TGG | + | chr5_3:2798503-2798522 | None:intergenic | 35.0% | |
| AGAGTCAAATGTATCACTGA+TGG | - | chr5_3:2798570-2798589 | Msa0791730:CDS | 35.0% | |
| ACAACGCTTTGTATGATTTG+AGG | + | chr5_3:2798611-2798630 | None:intergenic | 35.0% | |
| ! | AGATTCATTTTGCTGAACTC+CGG | + | chr5_3:2798644-2798663 | None:intergenic | 35.0% |
| ACGAAGAAGTCAATTAAGAC+AGG | - | chr5_3:2798685-2798704 | Msa0791730:CDS | 35.0% | |
| CGAAGAAGTCAATTAAGACA+GGG | - | chr5_3:2798686-2798705 | Msa0791730:CDS | 35.0% | |
| GAAGAAGTCAATTAAGACAG+GGG | - | chr5_3:2798687-2798706 | Msa0791730:CDS | 35.0% | |
| ATTACTCTGGTATCCACAAA+GGG | + | chr5_3:2798833-2798852 | None:intergenic | 35.0% | |
| TTATTGTTGCTGCATTACTC+TGG | + | chr5_3:2798846-2798865 | None:intergenic | 35.0% | |
| ! | GAGATCTGAACGACACTTTT+TGG | + | chr5_3:2794609-2794628 | None:intergenic | 40.0% |
| TCAGATCTCAGAATCAACCA+TGG | - | chr5_3:2794620-2794639 | Msa0791730:three_prime_UTR | 40.0% | |
| CTTAAGCTTTCGTTCGATGA+TGG | + | chr5_3:2794682-2794701 | None:intergenic | 40.0% | |
| AATTTGATTGGGGACGAAGA+GGG | + | chr5_3:2794744-2794763 | None:intergenic | 40.0% | |
| TCTGAATCCGAACAGAATTC+TGG | - | chr5_3:2794765-2794784 | Msa0791730:CDS | 40.0% | |
| TGTCCCTGAAATTGAAAGCT+TGG | - | chr5_3:2794812-2794831 | Msa0791730:CDS | 40.0% | |
| GTCCCTGAAATTGAAAGCTT+GGG | - | chr5_3:2794813-2794832 | Msa0791730:CDS | 40.0% | |
| CACCCAAGCTTTCAATTTCA+GGG | + | chr5_3:2794818-2794837 | None:intergenic | 40.0% | |
| AAATGTTACTGACACAGTCG+AGG | - | chr5_3:2794842-2794861 | Msa0791730:CDS | 40.0% | |
| ACAGTCGAGGAAAACGATTT+GGG | - | chr5_3:2794855-2794874 | Msa0791730:CDS | 40.0% | |
| ! | ACACTAATGGATACTTGGGT+TGG | - | chr5_3:2795535-2795554 | Msa0791730:intron | 40.0% |
| ! | CACTAATGGATACTTGGGTT+GGG | - | chr5_3:2795536-2795555 | Msa0791730:intron | 40.0% |
| GCTCAGAATCAATATCCACA+TGG | + | chr5_3:2795601-2795620 | None:intergenic | 40.0% | |
| GTGCTTAAATCATTCTCTGC+AGG | + | chr5_3:2795695-2795714 | None:intergenic | 40.0% | |
| TTAAGCACACCGCATATTGA+TGG | - | chr5_3:2795707-2795726 | Msa0791730:CDS | 40.0% | |
| ! | CGAATGATTTGCAGCATTGT+TGG | + | chr5_3:2795735-2795754 | None:intergenic | 40.0% |
| AATACCTGGGTATCATCAAC+AGG | + | chr5_3:2796167-2796186 | None:intergenic | 40.0% | |
| ATTAAAGAAGAGGCCCTCAA+TGG | - | chr5_3:2796296-2796315 | Msa0791730:CDS | 40.0% | |
| TTAAAGAAGAGGCCCTCAAT+GGG | - | chr5_3:2796297-2796316 | Msa0791730:CDS | 40.0% | |
| GCTTATTCAACTTCCCATTG+AGG | + | chr5_3:2796313-2796332 | None:intergenic | 40.0% | |
| CTTCAGATTTAGTCACTCAC+TGG | - | chr5_3:2796440-2796459 | Msa0791730:CDS | 40.0% | |
| TTGGGATGAGCTTAGCTATA+TGG | - | chr5_3:2796547-2796566 | Msa0791730:CDS | 40.0% | |
| !!! | GACAACCAATCCTTTTTTCC+AGG | - | chr5_3:2796745-2796764 | Msa0791730:intron | 40.0% |
| GAAGACCTGGAAAAAAGGAT+TGG | + | chr5_3:2796753-2796772 | None:intergenic | 40.0% | |
| !! | CATTATCTTGGAAGCGTTGT+AGG | + | chr5_3:2796914-2796933 | None:intergenic | 40.0% |
| CGCTTCCAAGATAATGAAGA+AGG | - | chr5_3:2796918-2796937 | Msa0791730:intron | 40.0% | |
| ATCTGACGATGAAGTTGAAG+AGG | - | chr5_3:2797115-2797134 | Msa0791730:CDS | 40.0% | |
| TTGATCTTCACAGCATCAGA+TGG | + | chr5_3:2797203-2797222 | None:intergenic | 40.0% | |
| CTTTATCCGTAAACATCTGC+GGG | + | chr5_3:2797250-2797269 | None:intergenic | 40.0% | |
| TCTATAAGAGAGGGACTGTT+TGG | + | chr5_3:2797318-2797337 | None:intergenic | 40.0% | |
| TTCCATCTTTGCATGCACTA+AGG | - | chr5_3:2797414-2797433 | Msa0791730:intron | 40.0% | |
| TACCTTAGTGCATGCAAAGA+TGG | + | chr5_3:2797419-2797438 | None:intergenic | 40.0% | |
| ! | GAACGCTCAATTCTTTTCAC+CGG | - | chr5_3:2797503-2797522 | Msa0791730:intron | 40.0% |
| CTGATTGGTGTACATTGCAT+AGG | + | chr5_3:2797657-2797676 | None:intergenic | 40.0% | |
| CTATGCAATGTACACCAATC+AGG | - | chr5_3:2797655-2797674 | Msa0791730:intron | 40.0% | |
| AATGGAACAAACCGTTAGCA+TGG | + | chr5_3:2797695-2797714 | None:intergenic | 40.0% | |
| ATGGCTGCAGCATACAATAA+TGG | + | chr5_3:2797713-2797732 | None:intergenic | 40.0% | |
| !!! | GTTATGTTTTGGCCAATGTG+TGG | + | chr5_3:2797746-2797765 | None:intergenic | 40.0% |
| ATGCCTTCTTCTCAAAAGCA+TGG | - | chr5_3:2798029-2798048 | Msa0791730:CDS | 40.0% | |
| !! | GATCCATGCTTTTGAGAAGA+AGG | + | chr5_3:2798035-2798054 | None:intergenic | 40.0% |
| ! | TCAAAAGCATGGATCAAGCA+AGG | - | chr5_3:2798040-2798059 | Msa0791730:CDS | 40.0% |
| GTCAGAGGATTCTTCAGATA+CGG | - | chr5_3:2798121-2798140 | Msa0791730:intron | 40.0% | |
| GCATGATTTAGTGGAATCTG+TGG | - | chr5_3:2798304-2798323 | Msa0791730:intron | 40.0% | |
| CACTGATGGAGATATTAAGC+AGG | - | chr5_3:2798584-2798603 | Msa0791730:CDS | 40.0% | |
| CATTACTCTGGTATCCACAA+AGG | + | chr5_3:2798834-2798853 | None:intergenic | 40.0% | |
| GAAATCATCGTCGCTATCCA+TGG | + | chr5_3:2794640-2794659 | None:intergenic | 45.0% | |
| !! | GATGATGGGAGAAGAAGGTA+AGG | + | chr5_3:2794667-2794686 | None:intergenic | 45.0% |
| !! | AGCGTTTGAAGAAGGCATCT+AGG | - | chr5_3:2794700-2794719 | Msa0791730:three_prime_UTR | 45.0% |
| !! | GCGTTTGAAGAAGGCATCTA+GGG | - | chr5_3:2794701-2794720 | Msa0791730:three_prime_UTR | 45.0% |
| ATTTGATTGGGGACGAAGAG+GGG | + | chr5_3:2794743-2794762 | None:intergenic | 45.0% | |
| GAATTTGATTGGGGACGAAG+AGG | + | chr5_3:2794745-2794764 | None:intergenic | 45.0% | |
| ! | ATCCGAACAGAATTCTGGCT+TGG | - | chr5_3:2794770-2794789 | Msa0791730:CDS | 45.0% |
| CTCCAAGCCAGAATTCTGTT+CGG | + | chr5_3:2794775-2794794 | None:intergenic | 45.0% | |
| CCACCCAAGCTTTCAATTTC+AGG | + | chr5_3:2794819-2794838 | None:intergenic | 45.0% | |
| CCTGAAATTGAAAGCTTGGG+TGG | - | chr5_3:2794816-2794835 | Msa0791730:CDS | 45.0% | |
| CACAGTCGAGGAAAACGATT+TGG | - | chr5_3:2794854-2794873 | Msa0791730:CDS | 45.0% | |
| ! | AAAACGATTTGGGTGCGAAG+AGG | - | chr5_3:2794865-2794884 | Msa0791730:CDS | 45.0% |
| ! | AAACGATTTGGGTGCGAAGA+GGG | - | chr5_3:2794866-2794885 | Msa0791730:CDS | 45.0% |
| !! | TATTGTCTTCTCTGGAACCC+TGG | + | chr5_3:2794928-2794947 | None:intergenic | 45.0% |
| AAGAGCAGTGACGACAGTAA+CGG | - | chr5_3:2795071-2795090 | Msa0791730:intron | 45.0% | |
| TGCGTTTAAACCTGTTCCTC+TGG | - | chr5_3:2795381-2795400 | Msa0791730:CDS | 45.0% | |
| ! | GAAGCCGATTTCGTCTATAC+TGG | - | chr5_3:2795408-2795427 | Msa0791730:CDS | 45.0% |
| TGACAATGATGGCTTCCATG+TGG | - | chr5_3:2795583-2795602 | Msa0791730:intron | 45.0% | |
| AGCTGGTGTTTCTTCGGATT+CGG | + | chr5_3:2795666-2795685 | None:intergenic | 45.0% | |
| GCATGTAGCTGGTGTTTCTT+CGG | + | chr5_3:2795672-2795691 | None:intergenic | 45.0% | |
| CATTGCTTACGCTGAGTTTC+AGG | - | chr5_3:2796106-2796125 | Msa0791730:intron | 45.0% | |
| TTACGCTGAGTTTCAGGATG+TGG | - | chr5_3:2796112-2796131 | Msa0791730:intron | 45.0% | |
| AGATGGGGCAAACACTTCTT+CGG | + | chr5_3:2796339-2796358 | None:intergenic | 45.0% | |
| GCTAAGCTCATCCCAAAGTA+AGG | + | chr5_3:2796543-2796562 | None:intergenic | 45.0% | |
| CATCGGAAGACCTGGAAAAA+AGG | + | chr5_3:2796758-2796777 | None:intergenic | 45.0% | |
| CTTGTCATTGTCCTCGTCAT+CGG | + | chr5_3:2796775-2796794 | None:intergenic | 45.0% | |
| GACTTGTCTTTACCTGCAAG+CGG | - | chr5_3:2796828-2796847 | Msa0791730:intron | 45.0% | |
| CATCGACAAAAGCCTTGACA+GGG | + | chr5_3:2796857-2796876 | None:intergenic | 45.0% | |
| TCATCGACAAAAGCCTTGAC+AGG | + | chr5_3:2796858-2796877 | None:intergenic | 45.0% | |
| GTCACTGTCATCTTCCTCTT+CGG | + | chr5_3:2796886-2796905 | None:intergenic | 45.0% | |
| TTGAGCAGCAGGATACAACT+GGG | - | chr5_3:2797045-2797064 | Msa0791730:intron | 45.0% | |
| TGAAGTTGAAGAGGAAGACG+AGG | - | chr5_3:2797124-2797143 | Msa0791730:CDS | 45.0% | |
| GATGATCCCGCAGATGTTTA+CGG | - | chr5_3:2797241-2797260 | Msa0791730:intron | 45.0% | |
| ATCATCTGATGAGGAAACCG+AGG | - | chr5_3:2797283-2797302 | Msa0791730:intron | 45.0% | |
| !! | GGATAAAGGAGCACTTCATC+AGG | + | chr5_3:2797819-2797838 | None:intergenic | 45.0% |
| !! | ACCTTCAGTGTTGATGTCAG+AGG | - | chr5_3:2798106-2798125 | Msa0791730:intron | 45.0% |
| TCCTCTGACATCAACACTGA+AGG | + | chr5_3:2798110-2798129 | None:intergenic | 45.0% | |
| TCTACTGTCATACTCACTCC+TGG | - | chr5_3:2798431-2798450 | Msa0791730:CDS | 45.0% | |
| TCACTCCTGGTTTCTCTGTT+CGG | - | chr5_3:2798444-2798463 | Msa0791730:CDS | 45.0% | |
| TACAACCGAACAGAGAAACC+AGG | + | chr5_3:2798452-2798471 | None:intergenic | 45.0% | |
| ! | AAGCGTTGTGTCAAGAATGC+CGG | - | chr5_3:2798622-2798641 | Msa0791730:CDS | 45.0% |
| !! | CGTTCGATGATGGGAGAAGA+AGG | + | chr5_3:2794672-2794691 | None:intergenic | 50.0% |
| !! | CGAACAGAATTCTGGCTTGG+AGG | - | chr5_3:2794773-2794792 | Msa0791730:CDS | 50.0% |
| !! | TCTGGCTTGGAGGAGTCAAT+TGG | - | chr5_3:2794783-2794802 | Msa0791730:CDS | 50.0% |
| ! | TTTGGGTGCGAAGAGGGTTT+TGG | - | chr5_3:2794872-2794891 | Msa0791730:CDS | 50.0% |
| !! | GCGAAGAAGTCTCTGAGACT+CGG | + | chr5_3:2795261-2795280 | None:intergenic | 50.0% |
| GAGTCTCAGAGACTTCTTCG+CGG | - | chr5_3:2795260-2795279 | Msa0791730:intron | 50.0% | |
| TCAGAGACTTCTTCGCGGTA+TGG | - | chr5_3:2795265-2795284 | Msa0791730:intron | 50.0% | |
| ! | GAAATCGGCTTCTGAACCAG+AGG | + | chr5_3:2795400-2795419 | None:intergenic | 50.0% |
| ATCTCTTCACTAGGATGGCG+AGG | + | chr5_3:2795623-2795642 | None:intergenic | 50.0% | |
| !! | AGCTCCTGTTGATGATACCC+AGG | - | chr5_3:2796160-2796179 | Msa0791730:CDS | 50.0% |
| CGATGACGAGGACAATGACA+AGG | - | chr5_3:2796773-2796792 | Msa0791730:intron | 50.0% | |
| AACACAGTGCCACACTCACA+TGG | - | chr5_3:2796798-2796817 | Msa0791730:intron | 50.0% | |
| TCAGCTGATCCATGTGAGTG+TGG | + | chr5_3:2796810-2796829 | None:intergenic | 50.0% | |
| TGTCGATGAAGAAGCCGAAG+AGG | - | chr5_3:2796869-2796888 | Msa0791730:intron | 50.0% | |
| GTGACCAACTCCATCAGCAA+TGG | - | chr5_3:2797021-2797040 | Msa0791730:intron | 50.0% | |
| CAAGCCATTGCTGATGGAGT+TGG | + | chr5_3:2797028-2797047 | None:intergenic | 50.0% | |
| CTTGAGCAGCAGGATACAAC+TGG | - | chr5_3:2797044-2797063 | Msa0791730:intron | 50.0% | |
| !! | CTGCTGCTTTCATCTTCAGC+CGG | + | chr5_3:2797525-2797544 | None:intergenic | 50.0% |
| GGCTGAAGATGAAAGCAGCA+GGG | - | chr5_3:2797524-2797543 | Msa0791730:intron | 50.0% | |
| GCTGAAGATGAAAGCAGCAG+GGG | - | chr5_3:2797525-2797544 | Msa0791730:intron | 50.0% | |
| !! | TGCTAGTCTTTCCGTGCGTT+TGG | - | chr5_3:2798791-2798810 | Msa0791730:CDS | 50.0% |
| !! | GCTAGTCTTTCCGTGCGTTT+GGG | - | chr5_3:2798792-2798811 | Msa0791730:CDS | 50.0% |
| !! | TCCGTGCGTTTGGGTTTTGT+TGG | - | chr5_3:2798801-2798820 | Msa0791730:CDS | 50.0% |
| GCCAACAAAACCCAAACGCA+CGG | + | chr5_3:2798805-2798824 | None:intergenic | 50.0% | |
| TTGTTGGCCAGTTCCCTTTG+TGG | - | chr5_3:2798817-2798836 | Msa0791730:exon | 50.0% | |
| CTGGTATCCACAAAGGGAAC+TGG | + | chr5_3:2798827-2798846 | None:intergenic | 50.0% | |
| GGCTTGGAGGAGTCAATTGG+AGG | - | chr5_3:2794786-2794805 | Msa0791730:CDS | 55.0% | |
| TGGACGATGAACTTGACGCC+AGG | - | chr5_3:2794907-2794926 | Msa0791730:CDS | 55.0% | |
| GGACGATGAACTTGACGCCA+GGG | - | chr5_3:2794908-2794927 | Msa0791730:CDS | 55.0% | |
| GGCTTCTGAACCAGAGGAAC+AGG | + | chr5_3:2795394-2795413 | None:intergenic | 55.0% | |
| TTCTCTGCAGGGCATGTAGC+TGG | + | chr5_3:2795683-2795702 | None:intergenic | 55.0% | |
| TTCCAGGTCTTCCGATGACG+AGG | - | chr5_3:2796761-2796780 | Msa0791730:intron | 55.0% | |
| GCTGCTCAAGCCATTGCTGA+TGG | + | chr5_3:2797034-2797053 | None:intergenic | 55.0% | |
| TCAGCAATGGCTTGAGCAGC+AGG | - | chr5_3:2797034-2797053 | Msa0791730:intron | 55.0% | |
| GCAGCAGGATACAACTGGGA+TGG | - | chr5_3:2797049-2797068 | Msa0791730:intron | 55.0% | |
| CTGATGAGGAAACCGAGGAG+AGG | - | chr5_3:2797288-2797307 | Msa0791730:intron | 55.0% | |
| !! | CTGTTTGGCTAGCCTCTCCT+CGG | + | chr5_3:2797303-2797322 | None:intergenic | 55.0% |
| CGGCTGAAGATGAAAGCAGC+AGG | - | chr5_3:2797523-2797542 | Msa0791730:intron | 55.0% | |
| ATTGGGGACGAAGAGGGGAG+AGG | + | chr5_3:2794738-2794757 | None:intergenic | 60.0% | |
| GTCCTCGTCATCGGAAGACC+TGG | + | chr5_3:2796766-2796785 | None:intergenic | 60.0% | |
| TTGACAGGGTCACCGCTTGC+AGG | + | chr5_3:2796843-2796862 | None:intergenic | 60.0% | |
| TGCAAGCGGTGACCCTGTCA+AGG | - | chr5_3:2796842-2796861 | Msa0791730:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 2794559 | 2798911 | 2794559 | ID=Msa0791730;Name=Msa0791730 |
| chr5_3 | mRNA | 2794559 | 2798911 | 2794559 | ID=Msa0791730-mRNA-1;Parent=Msa0791730;Name=Msa0791730-mRNA-1;_AED=0.09;_eAED=0.09;_QI=80|1|1|1|1|1|11|191|734 |
| chr5_3 | exon | 2794559 | 2794992 | 2794559 | ID=Msa0791730-mRNA-1:exon:1223;Parent=Msa0791730-mRNA-1 |
| chr5_3 | exon | 2795328 | 2795474 | 2795328 | ID=Msa0791730-mRNA-1:exon:1222;Parent=Msa0791730-mRNA-1 |
| chr5_3 | exon | 2795692 | 2795741 | 2795692 | ID=Msa0791730-mRNA-1:exon:1221;Parent=Msa0791730-mRNA-1 |
| chr5_3 | exon | 2795858 | 2795972 | 2795858 | ID=Msa0791730-mRNA-1:exon:1220;Parent=Msa0791730-mRNA-1 |
| chr5_3 | exon | 2796130 | 2796703 | 2796130 | ID=Msa0791730-mRNA-1:exon:1219;Parent=Msa0791730-mRNA-1 |
| chr5_3 | exon | 2797062 | 2797204 | 2797062 | ID=Msa0791730-mRNA-1:exon:1218;Parent=Msa0791730-mRNA-1 |
| chr5_3 | exon | 2797289 | 2797342 | 2797289 | ID=Msa0791730-mRNA-1:exon:1217;Parent=Msa0791730-mRNA-1 |
| chr5_3 | exon | 2797689 | 2797905 | 2797689 | ID=Msa0791730-mRNA-1:exon:1216;Parent=Msa0791730-mRNA-1 |
| chr5_3 | exon | 2798003 | 2798102 | 2798003 | ID=Msa0791730-mRNA-1:exon:1215;Parent=Msa0791730-mRNA-1 |
| chr5_3 | exon | 2798189 | 2798243 | 2798189 | ID=Msa0791730-mRNA-1:exon:1214;Parent=Msa0791730-mRNA-1 |
| chr5_3 | exon | 2798325 | 2798911 | 2798325 | ID=Msa0791730-mRNA-1:exon:1213;Parent=Msa0791730-mRNA-1 |
| chr5_3 | five_prime_UTR | 2798832 | 2798911 | 2798832 | ID=Msa0791730-mRNA-1:five_prime_utr;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2798325 | 2798831 | 2798325 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2798189 | 2798243 | 2798189 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2798003 | 2798102 | 2798003 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2797689 | 2797905 | 2797689 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2797289 | 2797342 | 2797289 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2797062 | 2797204 | 2797062 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2796130 | 2796703 | 2796130 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2795858 | 2795972 | 2795858 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2795692 | 2795741 | 2795692 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2795328 | 2795474 | 2795328 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | CDS | 2794750 | 2794992 | 2794750 | ID=Msa0791730-mRNA-1:cds;Parent=Msa0791730-mRNA-1 |
| chr5_3 | three_prime_UTR | 2794559 | 2794749 | 2794559 | ID=Msa0791730-mRNA-1:three_prime_utr;Parent=Msa0791730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
